Citrus Sinensis ID: 046506
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | 2.2.26 [Sep-21-2011] | |||||||
| P54771 | 523 | Tyrosine/DOPA decarboxyla | N/A | no | 0.983 | 0.583 | 0.704 | 1e-131 | |
| P54768 | 518 | Tyrosine/DOPA decarboxyla | N/A | no | 0.977 | 0.584 | 0.703 | 1e-129 | |
| P54769 | 531 | Tyrosine/DOPA decarboxyla | N/A | no | 0.970 | 0.566 | 0.646 | 1e-122 | |
| P54770 | 533 | Tyrosine/DOPA decarboxyla | N/A | no | 0.977 | 0.568 | 0.646 | 1e-121 | |
| Q06088 | 508 | Tyrosine decarboxylase 4 | N/A | no | 0.951 | 0.580 | 0.652 | 1e-114 | |
| Q06087 | 516 | Tyrosine decarboxylase 3 | N/A | no | 0.951 | 0.571 | 0.652 | 1e-114 | |
| Q06086 | 514 | Tyrosine decarboxylase 2 | N/A | no | 0.951 | 0.573 | 0.645 | 1e-112 | |
| Q8RY79 | 490 | Tyrosine decarboxylase 1 | yes | no | 0.938 | 0.593 | 0.557 | 7e-97 | |
| Q9M0G4 | 545 | Probable tyrosine decarbo | no | no | 0.922 | 0.524 | 0.536 | 1e-95 | |
| Q06085 | 432 | Tyrosine decarboxylase 1 | N/A | no | 0.806 | 0.578 | 0.653 | 2e-95 |
| >sp|P54771|TYDC5_PAPSO Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 215/305 (70%), Positives = 256/305 (83%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNFRAI T+K++ +GLSP +L++ I +D+E+GL+PLFLCAT+GTT+ TAV
Sbjct: 210 KAAQIAGINPKNFRAIATSKATDFGLSPQALLSTILADIESGLVPLFLCATVGTTSSTAV 269
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC+VAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 270 DPIGPLCEVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDC 329
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKD + LV +LST+PEYLKNKAT+SKQV+DYKDWQI LSRRFRS+KLW VLR+YGV
Sbjct: 330 CCLWVKDSNALVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGV 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR FLRSHV MAK F+ L+ DKRFE+V P FA+VCFR+ P+A+ + +
Sbjct: 390 ANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCFRLKPAAIFNGKLGENGVDYN 449
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
EE+ NE N +LLES+NASG YMTHAV+GG+Y IRFA GATLTEERHV +AW V+QEH
Sbjct: 450 CIEEKTNEINSKLLESVNASGSIYMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEH 509
Query: 301 LEALL 305
+A+L
Sbjct: 510 TDAIL 514
|
May play an important role in providing precursors for alkaloid synthesis in the roots and germinating seedlings. Papaver somniferum (taxid: 3469) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5 |
| >sp|P54768|TYDC1_PAPSO Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/307 (70%), Positives = 256/307 (83%), Gaps = 4/307 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNF AI T+K++++GLSP+SL + I +D+E+GL+PLFLCAT+GTT+ TAV
Sbjct: 210 KAAQIAGINPKNFLAIATSKATNFGLSPNSLQSTILADIESGLVPLFLCATVGTTSSTAV 269
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC VAK GIWVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 270 DPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNAHKWFFTTLDC 329
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKD LV +LST+PEYLKNKAT+SKQV+DYKDWQI LSRRFRS+KLW VLR+YG+
Sbjct: 330 CCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGI 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR FLRSHV MAK F+ L+G D RFE+V PR FA+VCFR+ P+A+ K K ++ +
Sbjct: 390 ANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRK-KIVEDDHI- 447
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
E + NE N +LLES+NASGK YMTHAV+GG+Y IRFA GATLTEERHV AW VVQEH
Sbjct: 448 --EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEH 505
Query: 301 LEALLSA 307
+A+L A
Sbjct: 506 TDAILGA 512
|
Marginally higher substrate specificity for L-DOPA over L-tyrosine. Papaver somniferum (taxid: 3469) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/320 (64%), Positives = 249/320 (77%), Gaps = 19/320 (5%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQ+ GI+ KNFRAIKT K +S+GLS +L I D+EAGLIPLF+C T+GTT+ TAV
Sbjct: 208 KAAQVAGINPKNFRAIKTFKENSFGLSAATLREVILEDIEAGLIPLFVCPTVGTTSSTAV 267
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + P+C+VAK++ +WVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 268 DPISPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDC 327
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDPS LV +LSTNPEYL+NKATES+QVVDYKDWQI LSRRFRSLKLW VLR+YGV
Sbjct: 328 CCLWVKDPSALVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRSLKLWMVLRSYGV 387
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMD----------- 229
NLR+FLRSHV MAK FE L+ D RFE+ PR FA+VCFR+ P +
Sbjct: 388 TNLRNFLRSHVKMAKTFEGLICMDGRFEITVPRTFAMVCFRLLPPKTIKVYDNGVHQNGN 447
Query: 230 ---KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTE 286
L+ + EN +L+ N+ N+ LE++NA+G YMTHAV+GG+Y IRFA G+TLTE
Sbjct: 448 GVVPLRDENENLVLA-----NKLNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLTE 502
Query: 287 ERHVMVAWTVVQEHLEALLS 306
ERHV+ AW ++QEH + +L
Sbjct: 503 ERHVIYAWKILQEHADLILG 522
|
Marginally higher substrate specificity for L-DOPA over L-tyrosine. Papaver somniferum (taxid: 3469) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P54770|TYDC3_PAPSO Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/320 (64%), Positives = 250/320 (78%), Gaps = 17/320 (5%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNFRA+KT K++S+GL+ +L I D+EAGLIPLF+C T+GTT+ TAV
Sbjct: 208 KAAQIAGINPKNFRAVKTFKANSFGLAASTLREVILEDIEAGLIPLFVCPTVGTTSSTAV 267
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + P+C+VAK++ +WVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 268 DPIGPICEVAKEYEMWVHIDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDC 327
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDPS LV +LSTNPEYL+NKATES+QVVDYKDWQI L RRFRS+KLW VLR+YGV
Sbjct: 328 CCLWVKDPSSLVKALSTNPEYLRNKATESRQVVDYKDWQIALIRRFRSMKLWMVLRSYGV 387
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS-- 238
NLR+FLRSHV MAK FE LVG+D+RFE+ PR FA+VCFR+ P +K EN
Sbjct: 388 TNLRNFLRSHVRMAKTFEGLVGADRRFEITVPRTFAMVCFRLLPPTT---VKVCGENGVH 444
Query: 239 ---------LLSEEERI---NEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTE 286
L +E E + N+ N+ L + A+G YMTHAV+GG+Y IRFA G+TLTE
Sbjct: 445 QNGNGVIAVLRNENEELVLANKLNQVYLRQVKATGSVYMTHAVVGGVYMIRFAVGSTLTE 504
Query: 287 ERHVMVAWTVVQEHLEALLS 306
ERHV+ AW V+QEH + +LS
Sbjct: 505 ERHVIHAWEVLQEHADLILS 524
|
Marginally higher substrate specificity for L-DOPA over L-tyrosine. Papaver somniferum (taxid: 3469) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06088|TYDC4_PETCR Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 242/305 (79%), Gaps = 10/305 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+I GID KNFRAI+TTKSS++ L P L + I D++ GLIPL+LCAT+GTT+ T V
Sbjct: 207 KAAKIAGIDPKNFRAIETTKSSNFKLCPKRLESAILYDLQNGLIPLYLCATVGTTSSTTV 266
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF TTLDC
Sbjct: 267 DPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDC 326
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWV+DPS L+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFVLR+YGV
Sbjct: 327 CCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGV 386
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
LR F+R HV MAK FE LVG DKRFEVV PR F++VCFR+ PSA++ K
Sbjct: 387 GQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAMIGK---------- 436
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
++E+ +NE NR+LLES+N SG+ Y++H VLGGIY IRFA G TLT+ HV AW V+Q+H
Sbjct: 437 NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDH 496
Query: 301 LEALL 305
+ALL
Sbjct: 497 ADALL 501
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06087|TYDC3_PETCR Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 241/305 (79%), Gaps = 10/305 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+I GID KNFRAI+TTKSS++ L P L + I D++ GLIPL+LCAT+GTT+ T V
Sbjct: 208 KAAKIAGIDPKNFRAIETTKSSNFKLCPKRLESAILYDLQNGLIPLYLCATVGTTSSTTV 267
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF TTLDC
Sbjct: 268 DPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDC 327
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWV+DPS L+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFVLR+YGV
Sbjct: 328 CCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGV 387
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
LR F+R HV MAK FE LVG DKRFEVV PR F++VCFR+ PSA++ K
Sbjct: 388 GQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAMIGK---------- 437
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
++E +NE NR+LLES+N SG+ Y++H VLGGIY IRFA G TLT+ HV AW V+Q+H
Sbjct: 438 NDENEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDH 497
Query: 301 LEALL 305
+ALL
Sbjct: 498 ADALL 502
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06086|TYDC2_PETCR Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 240/305 (78%), Gaps = 10/305 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+I GID KNFRAI+TTKSS++ L P L + I D++ GLIPL+LCAT+GTT+ T V
Sbjct: 206 KAAKIAGIDPKNFRAIETTKSSNFQLCPKRLESAILHDLQNGLIPLYLCATVGTTSSTTV 265
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF TTLDC
Sbjct: 266 DPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDC 325
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWV++PS L+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFVLR+YGV
Sbjct: 326 CCLWVRNPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGV 385
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
LR F+R HV MAK FE LV DKRFEVV PR F++VCFR+ PSA++ K
Sbjct: 386 GQLREFIRGHVGMAKYFEGLVNMDKRFEVVAPRLFSMVCFRIKPSAMIGK---------- 435
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
++E+ +NE NR+LLES+N SG+ Y++H VLGGIY IRFA G TLT+ HV AW V+Q+H
Sbjct: 436 NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDH 495
Query: 301 LEALL 305
ALL
Sbjct: 496 AGALL 500
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 170/305 (55%), Positives = 212/305 (69%), Gaps = 14/305 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA QI GI +N R + T S++Y L P+SL ++ D+EAGLIP FLCA +GTT+ TAV
Sbjct: 198 KACQIAGIHPENCRVLTTDSSTNYALRPESLQEAVSRDLEAGLIPFFLCANVGTTSSTAV 257
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +A GIW HVDAAYAGSACICPE+R +IDGVE ADSF++NAHKWF T DC
Sbjct: 258 DPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWFLTNFDC 317
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD L +LSTNPE+LKNKA+++ VVDYKDWQI L RRFRSLKLW VLR YG
Sbjct: 318 SLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVLRLYGS 377
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R+H+ +AK FE+LV D FE+V PR FA+VCFR+ P V D
Sbjct: 378 ETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVP--VKD----------- 424
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
EE++ N NRELL+++N+SGK +M+H L G +R A GA LTEE+HV AW ++QE
Sbjct: 425 -EEKKCNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEE 483
Query: 301 LEALL 305
LL
Sbjct: 484 ASYLL 488
|
Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9M0G4|TYDC2_ARATH Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 161/300 (53%), Positives = 215/300 (71%), Gaps = 14/300 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I GI +N R +KT S++YG+ P+SL I+ D+ G IP F+CAT+GTT+ AV
Sbjct: 250 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV 309
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L PL ++AK++GIW+HVDAAYAG+ACICPE+R FIDG+E ADSF++NAHKW F C
Sbjct: 310 DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 369
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD L+++L TNPEYL+ K ++ VV+YKDWQI+LSRRFRSLKLW VLR YG
Sbjct: 370 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGS 429
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NLR+F+R HVN+AK FE V D FEVV R+F++VCFR++P +
Sbjct: 430 ENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP--------------VD 475
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+E++ NE NRELL ++N++GK +++H L G + +RFA GA LTEE+HV AW ++Q+H
Sbjct: 476 GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 535
|
Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06085|TYDC1_PETCR Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum GN=TYRDC-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 207/260 (79%), Gaps = 10/260 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+I GID KNFRAI+T+KSS++ L P L + I D++ GLIPL+LCAT+GTT+ T V
Sbjct: 183 KAAKIAGIDPKNFRAIETSKSSNFKLCPKRLESAILYDLQNGLIPLYLCATVGTTSSTTV 242
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF TTLDC
Sbjct: 243 DPLPALTEVAKKYKLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDC 302
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWV+DPS L+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFVLR+YGV
Sbjct: 303 CCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGV 362
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
LR F+R HV MAK FE LVG D RFEVV PR F++VCFR+ PSA++ K
Sbjct: 363 GQLREFIRGHVGMAKYFEGLVGMDNRFEVVAPRLFSMVCFRIKPSAMIGK---------- 412
Query: 241 SEEERINEFNRELLESINAS 260
++E+ +NE NR+LLES+N S
Sbjct: 413 NDEDEVNEINRKLLESVNDS 432
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | ||||||
| 260060489 | 517 | tyrosine decarboxylase [Citrus reshni] g | 1.0 | 0.599 | 0.919 | 1e-167 | |
| 260060487 | 517 | tyrosine decarboxylase [Citrus reshni] | 1.0 | 0.599 | 0.906 | 1e-164 | |
| 1717828 | 523 | RecName: Full=Tyrosine/DOPA decarboxylas | 0.983 | 0.583 | 0.704 | 1e-129 | |
| 3282527 | 525 | tyrosine/dopa decarboxylase [Papaver som | 0.977 | 0.577 | 0.706 | 1e-128 | |
| 3282523 | 512 | tyrosine/dopa decarboxylase [Papaver som | 0.977 | 0.591 | 0.706 | 1e-128 | |
| 1717825 | 518 | RecName: Full=Tyrosine/DOPA decarboxylas | 0.977 | 0.584 | 0.703 | 1e-127 | |
| 12620328 | 518 | tyrosine/dopa decarboxylase [Thalictrum | 0.987 | 0.590 | 0.696 | 1e-126 | |
| 217038851 | 537 | tyrosine/DOPA decarboxylase [Argemone me | 0.987 | 0.569 | 0.666 | 1e-123 | |
| 45387431 | 409 | tyrosine decarboxylase [Aristolochia con | 0.964 | 0.731 | 0.681 | 1e-123 | |
| 115607203 | 516 | tyrosine decarboxylase [Aristolochia con | 0.964 | 0.579 | 0.675 | 1e-122 |
| >gi|260060489|gb|ACX29991.1| tyrosine decarboxylase [Citrus reshni] gi|260060491|gb|ACX29992.1| tyrosine decarboxylase [Citrus sinensis] gi|260060497|gb|ACX29995.1| tyrosine decarboxylase [Citrus aurantium] gi|260060499|gb|ACX29996.1| tyrosine decarboxylase [Citrus reticulata] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 286/311 (91%), Positives = 294/311 (94%), Gaps = 1/311 (0%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMA+INSDVE GLIPLFLCATIGTTAITAV
Sbjct: 207 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF TLDC
Sbjct: 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC 326
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDP LV+SLSTNPEYLKNKATES QVVDYKDWQITLSRRFRSLKLWFV+RNYGV
Sbjct: 327 CCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV 386
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAV-MDKLKTKYENSL 239
ANLRHFLRSHVNMAKLFERLV DKRFE+VFP HFAVVCFRVSPS V MDKLKTKY N L
Sbjct: 387 ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCL 446
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299
LSEEE+INEFNRELLESINASGKAYMTHAVLGGIYAIRFA GATLTE+RHV+VAWTVVQ+
Sbjct: 447 LSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQ 506
Query: 300 HLEALLSASKP 310
HLEA SA KP
Sbjct: 507 HLEAFQSAFKP 517
|
Source: Citrus reshni Species: Citrus reshni Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|260060487|gb|ACX29990.1| tyrosine decarboxylase [Citrus reshni] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/311 (90%), Positives = 291/311 (93%), Gaps = 1/311 (0%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMA+INSDVE GLIPLFLCATIGTTAITAV
Sbjct: 207 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF TLDC
Sbjct: 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC 326
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDP LV+SLSTNPEYLKNKATES VVDYKDWQITLSRR RSLKLWFV+RNYGV
Sbjct: 327 CCLWVKDPRALVSSLSTNPEYLKNKATESMHVVDYKDWQITLSRRSRSLKLWFVIRNYGV 386
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAV-MDKLKTKYENSL 239
ANLRHFLRSHVNMAKLFERLV DKRFE+VFP HFAVVCFRVSPS V MDKLKTKY N L
Sbjct: 387 ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCL 446
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299
LSE E+INEFNRELLESINASGKAYMTHAVLGGIYAIRFA GATLTE++HV+VAWTVVQ+
Sbjct: 447 LSEGEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKQHVVVAWTVVQQ 506
Query: 300 HLEALLSASKP 310
HLEA SA KP
Sbjct: 507 HLEAFQSAFKP 517
|
Source: Citrus reshni Species: Citrus reshni Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1717828|sp|P54771.1|TYDC5_PAPSO RecName: Full=Tyrosine/DOPA decarboxylase 5; Includes: RecName: Full=DOPA decarboxylase; Short=DDC; Includes: RecName: Full=Tyrosine decarboxylase gi|1049006|gb|AAA97535.1| tyrosine decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/305 (70%), Positives = 256/305 (83%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNFRAI T+K++ +GLSP +L++ I +D+E+GL+PLFLCAT+GTT+ TAV
Sbjct: 210 KAAQIAGINPKNFRAIATSKATDFGLSPQALLSTILADIESGLVPLFLCATVGTTSSTAV 269
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC+VAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 270 DPIGPLCEVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDC 329
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKD + LV +LST+PEYLKNKAT+SKQV+DYKDWQI LSRRFRS+KLW VLR+YGV
Sbjct: 330 CCLWVKDSNALVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGV 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR FLRSHV MAK F+ L+ DKRFE+V P FA+VCFR+ P+A+ + +
Sbjct: 390 ANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCFRLKPAAIFNGKLGENGVDYN 449
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
EE+ NE N +LLES+NASG YMTHAV+GG+Y IRFA GATLTEERHV +AW V+QEH
Sbjct: 450 CIEEKTNEINSKLLESVNASGSIYMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEH 509
Query: 301 LEALL 305
+A+L
Sbjct: 510 TDAIL 514
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3282527|gb|AAC61844.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/307 (70%), Positives = 257/307 (83%), Gaps = 4/307 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNFRAI T+K++++GLSP+SL + I +D+E+GL+PLFLCAT+GTT+ TAV
Sbjct: 210 KAAQIAGINPKNFRAIATSKATNFGLSPNSLQSTILADIESGLVPLFLCATVGTTSSTAV 269
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC VAK GIWVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 270 DPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNAHKWFFTTLDC 329
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKD LV +LST+PEYLKNKAT+SKQV+DYKDWQI LSRRFRS+KLW VLR+YG+
Sbjct: 330 CCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGI 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR FLRSHV MAK F+ L+G D RFE+V PR FA+VCFR+ P+A+ K K ++ +
Sbjct: 390 ANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRK-KIVEDDHI- 447
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
E + NE N +LLES+NASGK YMTHAV+GG+Y IRFA GATLTEERHV AW VVQEH
Sbjct: 448 --EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEH 505
Query: 301 LEALLSA 307
+A+L A
Sbjct: 506 TDAILGA 512
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3282523|gb|AAC61842.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/307 (70%), Positives = 257/307 (83%), Gaps = 4/307 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KN RAIKT+K++++GLSP+SL + I +D+E+GL+PLFLCAT+GTT+ TAV
Sbjct: 210 KAAQIAGINPKNVRAIKTSKATNFGLSPNSLQSAILADIESGLVPLFLCATVGTTSSTAV 269
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC VAK +GIWVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 270 DPIGPLCAVAKLYGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNAHKWFFTTLDC 329
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKD LV +LST+ EYLKNKATESKQV+DYKDWQI LSRRFRS+KLW VLR+YGV
Sbjct: 330 CCLWVKDSDSLVKALSTSAEYLKNKATESKQVIDYKDWQIALSRRFRSMKLWLVLRSYGV 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR FLRSHV MAK F+ L+G D RFE+V PR FA+VCFR+ P+A+ + +N +
Sbjct: 390 ANLRTFLRSHVKMAKHFQGLMGMDNRFEIVVPRTFAMVCFRLKPAAIFK--QKIVDNDYI 447
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
E++ NE N +LLES+NASGK YMTHAV+GG+Y IRFA GATLTEERHV AW VVQEH
Sbjct: 448 --EDQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEH 505
Query: 301 LEALLSA 307
+A+L A
Sbjct: 506 TDAILGA 512
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1717825|sp|P54768.1|TYDC1_PAPSO RecName: Full=Tyrosine/DOPA decarboxylase 1; Includes: RecName: Full=DOPA decarboxylase; Short=DDC; Includes: RecName: Full=Tyrosine decarboxylase gi|607745|gb|AAA62346.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/307 (70%), Positives = 256/307 (83%), Gaps = 4/307 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNF AI T+K++++GLSP+SL + I +D+E+GL+PLFLCAT+GTT+ TAV
Sbjct: 210 KAAQIAGINPKNFLAIATSKATNFGLSPNSLQSTILADIESGLVPLFLCATVGTTSSTAV 269
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC VAK GIWVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 270 DPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNAHKWFFTTLDC 329
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKD LV +LST+PEYLKNKAT+SKQV+DYKDWQI LSRRFRS+KLW VLR+YG+
Sbjct: 330 CCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGI 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR FLRSHV MAK F+ L+G D RFE+V PR FA+VCFR+ P+A+ K K ++ +
Sbjct: 390 ANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRK-KIVEDDHI- 447
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
E + NE N +LLES+NASGK YMTHAV+GG+Y IRFA GATLTEERHV AW VVQEH
Sbjct: 448 --EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEH 505
Query: 301 LEALLSA 307
+A+L A
Sbjct: 506 TDAILGA 512
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12620328|gb|AAG60665.1|AF314150_1 tyrosine/dopa decarboxylase [Thalictrum flavum subsp. glaucum] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/310 (69%), Positives = 252/310 (81%), Gaps = 4/310 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI NFRA+ TTK++ YGLS +L + I D+EAGL+PLFLCAT+GTT+ TAV
Sbjct: 207 KAAQIAGIHPNNFRAVPTTKANDYGLSASALRSTILEDIEAGLVPLFLCATVGTTSSTAV 266
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + PLC VA + IWVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 267 DPIGPLCKVASDYSIWVHVDAAYAGSACICPEFRHFIDGVENADSFSLNAHKWFFTTLDC 326
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVK+PS L+ +LSTNPEYL+NKATES QVVDYKDWQI LSRRFR++KLW VLR+YGV
Sbjct: 327 CCLWVKEPSALIKALSTNPEYLRNKATESHQVVDYKDWQIALSRRFRAMKLWLVLRSYGV 386
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK-YENS- 238
ANLR+FLRSHV MAK FE + DKRFE+V PR FA+VCFR+ P +KT Y+N
Sbjct: 387 ANLRNFLRSHVKMAKNFEGFIALDKRFEIVVPRTFAMVCFRLLPPRSPLIIKTNGYQNGN 446
Query: 239 --LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTV 296
+E R NE NR LLESINASG AYMTH+++GG+Y IRFA GA+LTEERHV++AW V
Sbjct: 447 GVYHKDESRANELNRRLLESINASGSAYMTHSMVGGVYMIRFAVGASLTEERHVILAWKV 506
Query: 297 VQEHLEALLS 306
VQEH +A+L+
Sbjct: 507 VQEHADAVLA 516
|
Source: Thalictrum flavum subsp. glaucum Species: Thalictrum flavum Genus: Thalictrum Family: Ranunculaceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217038851|gb|ACJ76782.1| tyrosine/DOPA decarboxylase [Argemone mexicana] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/321 (66%), Positives = 249/321 (77%), Gaps = 15/321 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GI+ KNFRA++T K+ S+GLS D+L I SDVEAGLIPLF+C T+GTT+ TAV
Sbjct: 208 KAAQIAGINPKNFRAVQTFKAHSFGLSADTLRKVIRSDVEAGLIPLFVCPTVGTTSSTAV 267
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + P+C+VAK++ +WVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 268 DPIGPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVENADSFSLNAHKWFFTTLDC 327
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDPS LV +LSTNPEYL+NKATESKQVVDYKDWQI LSRRFRS+KLW VLRNYGV
Sbjct: 328 CCLWVKDPSALVKALSTNPEYLRNKATESKQVVDYKDWQIALSRRFRSMKLWMVLRNYGV 387
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
ANLR+FLRSHV MAK FE L+ SD RFE+ PR FA+VCFR+ P + + E+ L
Sbjct: 388 ANLRNFLRSHVKMAKQFEGLIASDNRFEICVPRTFAMVCFRLLPPKSTRDNRVREEDGLF 447
Query: 241 -----SEEERINE----------FNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLT 285
E INE N+ LE +NA+G YMTHAV+GGIY IRFA G+TLT
Sbjct: 448 VSGVHDHENNINEDDHLLVVANKLNQIYLEKVNATGSLYMTHAVVGGIYMIRFAVGSTLT 507
Query: 286 EERHVMVAWTVVQEHLEALLS 306
EERH+ AW V+QEH + +L
Sbjct: 508 EERHITHAWKVLQEHADTILG 528
|
Source: Argemone mexicana Species: Argemone mexicana Genus: Argemone Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|45387431|gb|AAS60206.1| tyrosine decarboxylase [Aristolochia contorta] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/305 (68%), Positives = 248/305 (81%), Gaps = 6/305 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GID NFRA+KT +S ++G+S +L A + D GL+PLF+CAT+GTT+ TAV
Sbjct: 100 KAAQIAGIDPANFRAVKTARSDNFGMSAAALRAAVEEDTARGLVPLFVCATVGTTSSTAV 159
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L PLC+VA++ G+WVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFFTTLDC
Sbjct: 160 DPLGPLCEVAREHGMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDC 219
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDP LV +LSTNPEYL+NKATES+QVVDYKDWQI LSRRFR+LKLW VLR+YGV
Sbjct: 220 CCLWVKDPGSLVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRALKLWLVLRSYGV 279
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
+NLR+FLR+HV MAK FE L+ DKRFEVV PR FA+VCFR+ P+ +
Sbjct: 280 SNLRNFLRTHVKMAKTFEGLLAMDKRFEVVVPRTFAMVCFRLLPAGGGGGGDDE------ 333
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ +NE NR+LLESINASG+ YMTH+V+GG+Y IRFA GA+LTE+RHV +AW VVQ+H
Sbjct: 334 EGLDAVNELNRKLLESINASGRIYMTHSVVGGVYMIRFAVGASLTEDRHVNLAWKVVQDH 393
Query: 301 LEALL 305
+ALL
Sbjct: 394 ADALL 398
|
Source: Aristolochia contorta Species: Aristolochia contorta Genus: Aristolochia Family: Aristolochiaceae Order: Piperales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115607203|gb|ABJ16446.1| tyrosine decarboxylase [Aristolochia contorta] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/305 (67%), Positives = 246/305 (80%), Gaps = 6/305 (1%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQI GID NFRA+KT +S ++G+S +L A + D GL+PLF+CAT+GTT+ TAV
Sbjct: 207 KAAQIAGIDPANFRAVKTARSDNFGMSAAALRAAVEEDTARGLVPLFVCATVGTTSSTAV 266
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L PLC+VA++ G+WVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKW FT LDC
Sbjct: 267 DPLGPLCEVAREHGMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWLFTILDC 326
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
CCLWVKDP LV +LSTNPEYL+NKATES+QVVDYKDWQI LSRRFR+LKLW VLR+YGV
Sbjct: 327 CCLWVKDPGSLVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRALKLWLVLRSYGV 386
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
+NLR+FLR+HV MAK FE L+ DKRFEVV PR FA+VCFR+ P+ +
Sbjct: 387 SNLRNFLRTHVKMAKTFEGLLAMDKRFEVVVPRTFAMVCFRLLPAGGGGGGDDE------ 440
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ +NE NR+LLESINASG+ YMTH+V+GG+Y IRFA GA+LTE+RHV +AW VVQ+H
Sbjct: 441 EGLDAVNELNRKLLESINASGRIYMTHSVVGGVYMIRFAVGASLTEDRHVNLAWKVVQDH 500
Query: 301 LEALL 305
+ALL
Sbjct: 501 ADALL 505
|
Source: Aristolochia contorta Species: Aristolochia contorta Genus: Aristolochia Family: Aristolochiaceae Order: Piperales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | ||||||
| TAIR|locus:2038937 | 490 | AAS "AT2G20340" [Arabidopsis t | 0.938 | 0.593 | 0.557 | 1.4e-87 | |
| TAIR|locus:2139855 | 547 | TYRDC "L-tyrosine decarboxylas | 0.922 | 0.522 | 0.543 | 8.9e-86 | |
| ZFIN|ZDB-GENE-040426-2656 | 480 | ddc "dopa decarboxylase" [Dani | 0.693 | 0.447 | 0.459 | 9.9e-60 | |
| UNIPROTKB|E1BV90 | 485 | DDC "Uncharacterized protein" | 0.748 | 0.478 | 0.447 | 2e-59 | |
| UNIPROTKB|P27718 | 487 | DDC "Aromatic-L-amino-acid dec | 0.751 | 0.478 | 0.424 | 3.8e-58 | |
| MGI|MGI:94876 | 480 | Ddc "dopa decarboxylase" [Mus | 0.751 | 0.485 | 0.424 | 4.8e-58 | |
| RGD|2494 | 480 | Ddc "dopa decarboxylase (aroma | 0.751 | 0.485 | 0.420 | 2e-57 | |
| UNIPROTKB|F1PFV0 | 480 | DDC "Uncharacterized protein" | 0.709 | 0.458 | 0.431 | 2.6e-57 | |
| UNIPROTKB|E7EU95 | 402 | DDC "Aromatic-L-amino-acid dec | 0.751 | 0.579 | 0.428 | 2.9e-56 | |
| UNIPROTKB|H7BZF7 | 361 | DDC "Aromatic-L-amino-acid dec | 0.751 | 0.645 | 0.428 | 2.9e-56 |
| TAIR|locus:2038937 AAS "AT2G20340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 170/305 (55%), Positives = 212/305 (69%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA QI GI +N R + T S++Y L P+SL ++ D+EAGLIP FLCA +GTT+ TAV
Sbjct: 198 KACQIAGIHPENCRVLTTDSSTNYALRPESLQEAVSRDLEAGLIPFFLCANVGTTSSTAV 257
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +A GIW HVDAAYAGSACICPE+R +IDGVE ADSF++NAHKWF T DC
Sbjct: 258 DPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWFLTNFDC 317
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD L +LSTNPE+LKNKA+++ VVDYKDWQI L RRFRSLKLW VLR YG
Sbjct: 318 SLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVLRLYGS 377
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R+H+ +AK FE+LV D FE+V PR FA+VCFR+ P V D
Sbjct: 378 ETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVP--VKD----------- 424
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
EE++ N NRELL+++N+SGK +M+H L G +R A GA LTEE+HV AW ++QE
Sbjct: 425 -EEKKCNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEE 483
Query: 301 LEALL 305
LL
Sbjct: 484 ASYLL 488
|
|
| TAIR|locus:2139855 TYRDC "L-tyrosine decarboxylase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 164/302 (54%), Positives = 217/302 (71%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I GI +N R +KT S++YG+ P+SL I+ D+ G IP F+CAT+GTT+ AV
Sbjct: 250 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV 309
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L PL ++AK++GIW+HVDAAYAG+ACICPE+R FIDG+E ADSF++NAHKW F C
Sbjct: 310 DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 369
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQ--VVDYKDWQITLSRRFRSLKLWFVLRNY 178
LWVKD L+++L TNPEYL+ K SK+ VV+YKDWQI+LSRRFRSLKLW VLR Y
Sbjct: 370 SPLWVKDRYSLIDALKTNPEYLEFKVKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 429
Query: 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238
G NLR+F+R HVN+AK FE V D FEVV R+F++VCFR++P +D
Sbjct: 430 GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP---VD--------- 477
Query: 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298
+E++ NE NRELL ++N++GK +++H L G + +RFA GA LTEE+HV AW ++Q
Sbjct: 478 --GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQ 535
Query: 299 EH 300
+H
Sbjct: 536 KH 537
|
|
| ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 102/222 (45%), Positives = 137/222 (61%)
Query: 14 RAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVA 70
R K S + + D+L + D AGLIP F CAT+GTTA A D L P+C+
Sbjct: 205 RMKKIPTDSKFSVRGDALERILKEDKAAGLIPFFFCATLGTTASCAFDCITELGPICNAE 264
Query: 71 KQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD 130
K +W+H+DAAYAGSA ICPEFR ++G+E ADSF+ N HKW DC +WVK +D
Sbjct: 265 K---MWMHIDAAYAGSAFICPEFRPLLNGIEFADSFNFNPHKWLLINFDCSAMWVKKRAD 321
Query: 131 LVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSH 190
++ + P YLK+ ES V DY+ WQI L RRFRSLK+WFV R YG+ L+ ++R H
Sbjct: 322 IIGAFKMEPLYLKHDHQESGLVTDYRHWQIPLGRRFRSLKMWFVFRMYGLKALQAYIRKH 381
Query: 191 VNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS-PSAVMDKL 231
V +AK FE V +D+RFE+ +VCFR+ P+ + + L
Sbjct: 382 VGLAKEFEAFVRADQRFEISADVVMGLVCFRLKGPNELSENL 423
|
|
| UNIPROTKB|E1BV90 DDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 106/237 (44%), Positives = 143/237 (60%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+AA I G+ +K+ ++ + +L ++ D +GLIP F CAT+GTT +
Sbjct: 197 RAALISGVKMKS-----VPSDDTFAVHGSALKKILDEDKASGLIPFFFCATLGTTPCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L + + IW+H+DAAYAGSA ICPEFRHF++GVE ADSF+ N HKW DC
Sbjct: 252 DKLLELGPICNKENIWMHIDAAYAGSAFICPEFRHFLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK SDL+ + P YL++ ES + DY+ WQI L RRFRSLKLWFVLR YGV
Sbjct: 312 SAMWVKKRSDLIGAFKLEPLYLQHHHQESGLITDYRHWQIPLGRRFRSLKLWFVLRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237
L+ +R HV ++ FE LV D+RFE+ +VCFR+ S ++K K N
Sbjct: 372 TGLQEHIRKHVRLSHQFEHLVLQDERFEICAEVVLGLVCFRLKGSNELNKALLKSIN 428
|
|
| UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 101/238 (42%), Positives = 143/238 (60%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I G+ +K AI + + + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 KAGLIGGVRLK---AIPS--DGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + G+W+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICHEEGLWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YL++ +S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKKRTDLTGAFRLDPVYLRHSHQDSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S +++ + NS
Sbjct: 372 KGLQAYIRKHVQLSHAFEALVRQDTRFEICAEVILGLVCFRLKGSNKLNEALLESINS 429
|
|
| MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 101/238 (42%), Positives = 145/238 (60%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I GI +K A+ + ++ + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGIKLK---AVPS--DGNFSMRASALREALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + Q G+W+H+DAAYAGSA ICPEFR+ ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + + +P YLK+ +S + DY+ WQI L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKRRTDLTGAFNMDPVYLKHSHQDSGFITDYRHWQIPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S +++ + NS
Sbjct: 372 KGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNELNETLLQRINS 429
|
|
| RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 100/238 (42%), Positives = 144/238 (60%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + +Y + +L + D AGLIP F+ T+GTT+ +
Sbjct: 197 RAGLIGGVKIK---AIPS--DGNYSMRAAALREALERDKAAGLIPFFVVVTLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + Q G+W+H+DAAYAGSA ICPEFR+ ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + + +P YL++ +S + DY+ WQI L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKKRTDLTEAFNMDPVYLRHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S +++ + NS
Sbjct: 372 KGLQAYIRKHVKLSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNQLNETLLQRINS 429
|
|
| UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 97/225 (43%), Positives = 137/225 (60%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + + + +L + D GLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGVKLK---AIPS--DGKFAMRASALQEALERDKAEGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + +W+H+DAAYAGS+ ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICNKEDMWLHIDAAYAGSSFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL+ + +P YLK+ +S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKKRTDLIGAFKLDPLYLKHNHQDSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPS 225
L+ ++R HV +A FERLV D RFE+ +VCFR+ S
Sbjct: 372 KGLQAYIRKHVRLAHEFERLVQQDPRFEICTEVTLGLVCFRLKGS 416
|
|
| UNIPROTKB|E7EU95 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 102/238 (42%), Positives = 142/238 (59%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + ++ + +L + D AGLIP F+ AT+GTT +
Sbjct: 119 RAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSF 173
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 174 DNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 233
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ +S + DY+ WQI L RRFRSLK+WFV R YGV
Sbjct: 234 SAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGV 293
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S +++ + NS
Sbjct: 294 KGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINS 351
|
|
| UNIPROTKB|H7BZF7 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 102/238 (42%), Positives = 142/238 (59%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + ++ + +L + D AGLIP F+ AT+GTT +
Sbjct: 78 RAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSF 132
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 133 DNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 192
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ +S + DY+ WQI L RRFRSLK+WFV R YGV
Sbjct: 193 SAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGV 252
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S +++ + NS
Sbjct: 253 KGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINS 310
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 310 | |||
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 1e-138 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 1e-119 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 6e-97 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 6e-68 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 2e-38 | |
| TIGR03799 | 522 | TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend | 3e-18 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 5e-09 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 5e-08 | |
| PRK02769 | 380 | PRK02769, PRK02769, histidine decarboxylase; Provi | 9e-08 | |
| PRK13520 | 371 | PRK13520, PRK13520, L-tyrosine decarboxylase; Prov | 1e-06 | |
| PLN03032 | 374 | PLN03032, PLN03032, serine decarboxylase; Provisio | 7e-05 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-138
Identities = 174/309 (56%), Positives = 222/309 (71%), Gaps = 14/309 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA QI GI +N R +KT S++Y L+P+ L I++D+ +GLIP FLCAT+GTT+ TAV
Sbjct: 196 KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV 255
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +AK G+W HVDAAYAGSACICPE+RH+IDGVE ADSF++NAHKWF T DC
Sbjct: 256 DPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDC 315
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD + L+ SLSTNPE+LKNKA+++ VVDYKDWQI L RRFRSLKLW VLR YGV
Sbjct: 316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NL+ ++R+H+ +AK FE+LV D RFEVV PR F++VCFR+ P
Sbjct: 376 ENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK-------------- 421
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ E+ N+ N +LL+++N+SGK +++H VL G Y +RFA GA LTEERHV AW V+Q+
Sbjct: 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDE 481
Query: 301 LEALLSASK 309
LL S
Sbjct: 482 ASKLLGKSS 490
|
Length = 490 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-119
Identities = 161/300 (53%), Positives = 215/300 (71%), Gaps = 14/300 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I GI +N R +KT S++YG+ P+SL I+ D+ G IP F+CAT+GTT+ AV
Sbjct: 244 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV 303
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L PL ++AK++GIW+HVDAAYAG+ACICPE+R FIDG+E ADSF++NAHKW F C
Sbjct: 304 DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 363
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD L+++L TNPEYL+ K ++ VV+YKDWQI+LSRRFRSLKLW VLR YG
Sbjct: 364 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGS 423
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NLR+F+R HVN+AK FE V D FEVV R+F++VCFR++P +
Sbjct: 424 ENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP--------------VD 469
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+E++ NE NRELL ++N++GK +++H L G + +RFA GA LTEE+HV AW ++Q+H
Sbjct: 470 GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529
|
Length = 539 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 6e-97
Identities = 115/221 (52%), Positives = 142/221 (64%), Gaps = 5/221 (2%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA I G++ R I T ++ + L I D E GLIP F+CAT+GTT A
Sbjct: 156 KAALIAGVE---LREIPTDEN--GKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAF 210
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ L D+ ++ +W+HVDAAYAGSA ICPEFRH++ G+E ADSFS N HKW LDC
Sbjct: 211 DPLQELGDICNKYDLWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDC 270
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWV+D L +L NPEYL + +S VDY DWQI LSRRFR LKLWFVLR+YGV
Sbjct: 271 SALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGV 330
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR 221
L++ +R HV +AK FE LV D RFE+ R +VCFR
Sbjct: 331 EGLQNQIRRHVELAKYFEALVRKDSRFEICAERGLGLVCFR 371
|
Length = 373 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 6e-68
Identities = 79/300 (26%), Positives = 126/300 (42%), Gaps = 64/300 (21%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA + + V R + + + P++L A I+ D GL P+ + AT GTT A+
Sbjct: 110 KAAAYLDVKV---RLVPVDEDGR--MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI 164
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ + D+A+++ +W+HVDAAY G PE RH G+E DS S++ HK+ L C
Sbjct: 165 DPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGC 224
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+ V R+LKLW LR +G
Sbjct: 225 SAVLV-----------------------------------------RALKLWATLRRFGR 243
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
+ V++AK L+ +D FE++ + ++VCFR+ PS +D+L
Sbjct: 244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDEL--------- 294
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
N +L + +N G ++ LGG +RF LT ++
Sbjct: 295 ---------NYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIERA 345
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-38
Identities = 67/305 (21%), Positives = 128/305 (41%), Gaps = 27/305 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+ +G+ ++ + T Y + D+L I+ + G++ T GTT ++
Sbjct: 172 KAARYLGLGLRRVPTVPTD----YRIDVDALEEAIDENTIGGVV----VGTAGTTDTGSI 223
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVEGADSFSLNAHKWFFTTLD 119
D ++ L D+A+++GIW+HVDAA+ G E + G+EG DS +++ HK+ +
Sbjct: 224 DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIG 283
Query: 120 CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179
C + +D L L YL + ++ R ++L L+ LR G
Sbjct: 284 CGVVLFRDEEALRRILIFADYYL-----PGGGIPNFTILGSRPGR--QALALYANLRRLG 336
Query: 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239
R L + +A+ + FE+V +V FR+ E++L
Sbjct: 337 REGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDD----------EDTL 386
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299
ER++ ++ + G A + + G ++F L +R + +++E
Sbjct: 387 ADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDREESL-LALIEE 445
Query: 300 HLEAL 304
+
Sbjct: 446 PGREI 450
|
Length = 460 |
| >gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 14/269 (5%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA ++GI N AIKT ++ + D+L K E + PL + GTT +
Sbjct: 224 KAADVLGIGRDNLIAIKTDANNR--IDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI 281
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + D+A++ G HVDAA+ G+ + +RH + G+E ADS +++AHK + +
Sbjct: 282 DPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGA 341
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW-QITL--SRRFRSLKLWFVLRN 177
+ KDP+ L++++ + EY+ K + KD TL SR ++ ++ L
Sbjct: 342 GMVLFKDPA-LMSAIEHHAEYILRKGS--------KDLGSHTLEGSRPGMAMLVYAGLHI 392
Query: 178 YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237
G + + AK F L+ FE+V ++ +R P V L E
Sbjct: 393 IGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEE 452
Query: 238 SLLSEEERINEFNRELLESINASGKAYMT 266
E ++ + + + +GK++++
Sbjct: 453 QREKINELLDRLTKFIQKRQREAGKSFVS 481
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+++G+++ Y + + I D G++ GTT + +
Sbjct: 121 KAAEMLGLEL-----RYAPLDEDYTVDVKDVEDLI-DDNTIGIV-----GIAGTTELGQI 169
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGS----ACICPEFRHFIDGVEGADSFSLNAHKWFFT 116
D ++ L +A + GI++HVDAA+ G F + G S +++ HK +
Sbjct: 170 DDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLS 229
Query: 117 TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151
+ + + S L LS + YL T KQ
Sbjct: 230 PIPAGGILFRSKSYL-KYLSVDAPYL----TVKKQ 259
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 38 DVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI 97
+++A + T TT+ + LK + +AK++GI + VDAA AG A P
Sbjct: 86 ELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL--- 142
Query: 98 DGVEGADSFSLNAHKWF 114
GAD + + HK
Sbjct: 143 IPEGGADVVTFSLHKNL 159
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 33/183 (18%)
Query: 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGI---WVHVDAAYAG 85
D L++KI + P + A IGTT A+D +K + ++ K+ GI ++H DAA +G
Sbjct: 148 DDLISKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSG 204
Query: 86 SACICPEFRHFIDGV------EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNP 139
I P F++ +G DS +++ HK+ + + C + K V +S +
Sbjct: 205 M--ILP----FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAK--KKYVERISVDV 256
Query: 140 EYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAK-LF 197
+Y + +D I+ SR +L LW +R+ G LR ++ ++MA+
Sbjct: 257 DY-----------IGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAV 305
Query: 198 ERL 200
+RL
Sbjct: 306 DRL 308
|
Length = 380 |
| >gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA ++G+++ R Y + ++ I+ + G++ GTT + V
Sbjct: 119 KAADMLGVEL---RRAPLDDD--YRVDVKAVEDLIDDNT-IGIV-----GIAGTTELGQV 167
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---GVEGADSFSLNAHKWFFTT 117
D + L +A + GI++HVDAA+ G + P + + G DS +++ HK
Sbjct: 168 DPIPELSKIALENGIFLHVDAAFGG--FVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAP 225
Query: 118 LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152
+ + +D S L ++L+ + YL T KQ
Sbjct: 226 IPAGGILFRDESYL-DALAVDTPYL----TSKKQA 255
|
Length = 371 |
| >gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 28 PDSLMAKIN-SDVEAGLI-----PLFLCATIGTTAITAVDTLKPLCDVAKQFGI-----W 76
P +I+ D+E L P L IGTT AVD L + + K+ G +
Sbjct: 139 PTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFY 198
Query: 77 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS 136
+H D A G + + S S++ HK+ + C + V +LS
Sbjct: 199 IHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTR--KKHVKALS 256
Query: 137 TNPEYLKNKATESKQVVDYKDWQITLSRRFRS-LKLWFVLRNYGVANLR----------H 185
N EYL + +D I SR + L LW+ LR G ++ H
Sbjct: 257 QNVEYLNS-----------RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAH 305
Query: 186 FLRSHVNMAKLFERLVGSDKRFEVVFPR 213
+L+ + A L RL ++ VVF R
Sbjct: 306 YLKDRLTEAGLTCRL--NELSSTVVFER 331
|
Length = 374 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 100.0 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.97 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.95 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.95 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.95 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.95 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.95 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.95 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.95 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.94 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.94 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.94 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.94 | |
| PLN02651 | 364 | cysteine desulfurase | 99.93 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.93 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.92 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.92 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.92 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.92 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.92 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.91 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.91 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.91 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.9 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.9 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.9 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.9 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.9 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.9 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.89 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.89 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.89 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.89 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.89 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.88 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.88 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.87 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.86 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.86 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.86 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.85 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.85 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.85 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.84 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.84 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.83 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.83 | |
| PLN02721 | 353 | threonine aldolase | 99.82 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.81 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.81 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.8 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.79 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.79 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.79 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.79 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.78 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.78 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.78 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.77 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.77 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.76 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.76 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.76 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.76 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.75 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.75 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.75 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.75 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.74 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.73 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.72 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.72 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.71 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.71 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.71 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.69 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.69 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.69 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.69 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.68 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.68 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.68 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.68 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.68 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.67 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.66 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.66 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.66 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.66 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.66 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.66 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.66 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.66 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.65 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.65 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.65 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.64 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.64 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.64 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.64 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.64 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.63 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.63 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.63 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.62 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.62 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.62 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.62 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.62 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.61 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.61 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.61 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.61 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.61 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.61 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.61 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.61 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.61 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.6 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.6 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.59 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.59 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.59 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.59 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.59 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.58 | |
| PRK07324 | 373 | transaminase; Validated | 99.58 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.58 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.58 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.58 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.58 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.58 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.58 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.58 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.57 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.56 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.56 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.56 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.56 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.56 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.56 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.56 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.56 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.55 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.55 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.55 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.55 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.55 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.55 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.55 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.55 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.54 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.54 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.54 | |
| PLN02187 | 462 | rooty/superroot1 | 99.54 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.54 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.53 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.53 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.53 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.53 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.53 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.53 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.52 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.52 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.51 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.51 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.5 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.5 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.5 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.5 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.5 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.5 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.49 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.49 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.49 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.49 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.49 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.48 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.48 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.48 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.48 | |
| PLN02656 | 409 | tyrosine transaminase | 99.48 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.47 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.47 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.47 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.47 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.47 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.47 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.47 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.46 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.46 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.46 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.46 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.45 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.45 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.45 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.45 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.44 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.44 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.44 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.43 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.43 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.43 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.43 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.43 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.43 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.42 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.42 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.42 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.42 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.42 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.41 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.41 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.41 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.41 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.41 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.4 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.4 | |
| PLN02231 | 534 | alanine transaminase | 99.4 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.4 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.39 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.39 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.39 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.38 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.38 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.38 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.38 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.38 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.38 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.38 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.38 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.37 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.37 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.37 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.36 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.36 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.36 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.36 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.35 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.35 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.35 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.34 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.34 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.33 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.33 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.32 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.32 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.32 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.31 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.3 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.3 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.3 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.3 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.3 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.29 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.29 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.29 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.27 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.27 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.27 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.26 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.26 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.26 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.26 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.26 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.25 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.23 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.23 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.22 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.22 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.21 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.21 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.2 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.2 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.2 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.19 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.19 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.19 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.19 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.18 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.18 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.17 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.17 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.17 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.16 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.16 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.16 | |
| PLN02397 | 423 | aspartate transaminase | 99.15 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.14 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.13 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.12 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.12 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.12 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.12 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.12 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.12 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.11 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.11 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.11 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.11 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.11 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.11 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.1 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.1 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.1 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.1 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.1 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.09 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.08 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.08 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.08 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.08 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.08 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.08 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.07 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.07 | |
| PLN02368 | 407 | alanine transaminase | 99.07 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.07 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.07 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.06 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.05 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.05 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.04 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.04 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.03 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.01 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.01 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.99 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.98 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.98 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 98.97 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.97 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 98.97 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.97 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.96 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 98.94 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 98.93 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.92 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.91 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.89 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.88 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 98.88 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.88 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.87 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.87 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 98.86 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.82 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 98.8 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.77 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 98.76 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.67 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 98.65 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 98.56 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.54 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.54 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.51 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.25 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 98.24 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.23 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.2 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.04 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.97 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 97.88 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 97.46 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.42 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 97.37 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.79 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.3 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 95.28 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 93.7 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 93.66 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 82.33 |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=390.47 Aligned_cols=290 Identities=56% Similarity=1.023 Sum_probs=266.5
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|||+++|++..+++.||+|..+.+.||+++|+++|.+.++.+.+|++||.+.++|.+|++|||++|+++|++||+|+|||
T Consensus 244 KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVD 323 (539)
T PLN02590 244 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVD 323 (539)
T ss_pred HHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEe
Confidence 78999999999999999996445799999999999999888899999999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
||+|++++++++++.+..+++.+||+++++|||+++|++||+++++++..+.+.+...++|+..........+++.++++
T Consensus 324 aA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i 403 (539)
T PLN02590 324 AAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQI 403 (539)
T ss_pred cchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCC
Confidence 99999999999998888999999999999999999999999999999977778888889999654333334678999999
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
++|||++++++|++++.+|.+|+.++++++.+++++|.+.|++.|+|+++.+|..++|+|++.+..
T Consensus 404 ~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~-------------- 469 (539)
T PLN02590 404 SLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVD-------------- 469 (539)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+++..++++..+.++|.++|.++++++.+++..+||+++.++.|+++||+.+++.|.+.+.++
T Consensus 470 ~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 470 GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533 (539)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1234457889999999999999999999999999999999999999999999999999988765
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=379.33 Aligned_cols=294 Identities=59% Similarity=1.047 Sum_probs=265.8
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|||+++|++..+++.||+|+++++.||+++|+++|.+.++.+.+|++||.+.++|.+|.+|||++|+++|++||+|+|||
T Consensus 196 Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVD 275 (490)
T PLN02880 196 KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVD 275 (490)
T ss_pred HHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEe
Confidence 78999999999999999987556799999999999998888889999999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
||||++.+..+.++....+++.+||+++++|||+++|++||+++++++..+.+.+..+++|+........+.+++.++++
T Consensus 276 aA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i 355 (490)
T PLN02880 276 AAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQI 355 (490)
T ss_pred hhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCc
Confidence 99999998888888888888889999999999999999999999998866667777888898764332234568888999
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+.|||++++++|++++.+|.+++.++++++.++++++.+.|++.|+++++.++..++++|++.+..
T Consensus 356 ~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~-------------- 421 (490)
T PLN02880 356 PLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK-------------- 421 (490)
T ss_pred CCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSAS 308 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~~~ 308 (310)
.+.+..++++..+.++|.++|.++++++.+.+..++|+|+++|.|+++||+.+++.|.+++.++..++
T Consensus 422 ~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~~ 489 (490)
T PLN02880 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGKS 489 (490)
T ss_pred CChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345578889999999999999999999999999999999999999999999999999998875543
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=350.13 Aligned_cols=290 Identities=24% Similarity=0.392 Sum_probs=251.4
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|+|+++|++..+++.||+|++ +.||+++|+++|.+..+.+..|+.|+.++++|.+|.++||++|+++|+++|+|+|||
T Consensus 224 kaa~~lglg~~~v~~vp~d~~--g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVD 301 (522)
T TIGR03799 224 KAADVLGIGRDNLIAIKTDAN--NRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVD 301 (522)
T ss_pred HHHHHcCCCcccEEEEEeCCC--CcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEE
Confidence 678899998778999999975 599999999999887777777888999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|++++.++.++++....+++++|++++++|||+++|+|||+++++++..+ +.+...++|+...+ ..++.++++
T Consensus 302 aA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl~~~~-----~~d~~~~~l 375 (522)
T TIGR03799 302 AAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYILRKG-----SKDLGSHTL 375 (522)
T ss_pred chhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchhcCCC-----CCcccccee
Confidence 999999888888887788888899999999999999999999999998654 55666678875432 235667899
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
++||++.++++|++++.+|.+|++++.+++.++++++.+.|++.|+++++++|..++++|++.|......+..+..++..
T Consensus 376 egsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~ 455 (522)
T TIGR03799 376 EGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQRE 455 (522)
T ss_pred ecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999886654445445544444
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-------CEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLG-------GIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
...+..+.+++.+.+++.+.|..+++.+... +..++|++++||.||++||+.+++.-.
T Consensus 456 ~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~ 520 (522)
T TIGR03799 456 KINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQR 520 (522)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhh
Confidence 4445678899999999999999999987654 347899999999999999999887643
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=296.81 Aligned_cols=295 Identities=23% Similarity=0.372 Sum_probs=260.8
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|||.++|+|..+++.|++++.| +|++++||++|.+.++.+..|++|++++++|+.|+.|||..|+++|.+|++|+|||
T Consensus 212 kaAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvD 289 (510)
T KOG0629|consen 212 KAAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVD 289 (510)
T ss_pred HHHHHhccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEee
Confidence 6899999999999999999855 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|+|++.+.+..++.++.+++.+||++.++||++++|..|+.++++....+.++-+.++.|+++.+..++-..|.++..+
T Consensus 290 AAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~i 369 (510)
T KOG0629|consen 290 AAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAI 369 (510)
T ss_pred cccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchh
Confidence 99999999998899899999999999999999999999999999999988888889999999999988888889999999
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhhhhhccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
|+||+.+.+.+|..+++-|..|+++.++++.++|+|+.++|++-+++..+.. |+...++|++.|+.++. . +-
T Consensus 370 QCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~----~--~~ 443 (510)
T KOG0629|consen 370 QCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRG----W--QE 443 (510)
T ss_pred hcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhcc----C--cc
Confidence 9999999999999999999999999999999999999999999888876643 67778899999875422 1 11
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECC-EeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGG-IYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+.-...+.+.+..+..+|.++|..++..+..+. ...+|+.+.++..+++|+|.+++.|..+.+.
T Consensus 444 ~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 444 NPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred cchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 1233345566667777889999987777654433 4689999898889999999999999987654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=289.76 Aligned_cols=277 Identities=48% Similarity=0.882 Sum_probs=261.0
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|||.+.|+. ++.+++|. ++.|+.+.|+++|.++.+.|.+|+.++++.++|.+-..|+|.+|+.+|+++|+|||||
T Consensus 197 ka~~i~~Vk---lR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVD 271 (511)
T KOG0628|consen 197 KACLIAGVK---LRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVD 271 (511)
T ss_pred HhHhhccee---EEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEee
Confidence 678888887 99999997 5799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|+++.++.+++++.+..|++.+|++.+++|||+.+-..|+.+++++...+.+.+..+|-|+...... ..+|++.|.+
T Consensus 272 AAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~--~~~Dyrhwqi 349 (511)
T KOG0628|consen 272 AAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG--SAPDYRHWQI 349 (511)
T ss_pred hhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhc--cCCCcccccc
Confidence 99999999999999999999999999999999999999999999999977778888999999877643 3779999999
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+.|||++++.+|..++.+|.+++.+.+++..++++.+.+.+.+.+.|++.+++..+++||+..+.
T Consensus 350 pl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~--------------- 414 (511)
T KOG0628|consen 350 PLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGD--------------- 414 (511)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
++.|+.+.++++..|.+++.+....+.-+||+++.++.|+++||+...+.|.+.+..+.
T Consensus 415 ------N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 415 ------NEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELF 473 (511)
T ss_pred ------cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999887753
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=301.77 Aligned_cols=218 Identities=39% Similarity=0.708 Sum_probs=193.7
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|||+++|++ ++.||++++ +.||+++|+++|.+..+.+..|.+|+.+.++|.+|++|||++|+++|+++|+|+|||
T Consensus 156 Kaa~~lGlg---~~~I~~~~~--~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 156 KAARILGLG---VRKIPTDED--GRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp HHHHHTTSE---EEEE-BBTT--SSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEE
T ss_pred HhcceeeeE---EEEecCCcc--hhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeec
Confidence 789999999 999999984 599999999999999888888889999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
||+|+..+..+.++.+..+++.+||+++++|||+++|++||+++++++..+...+..+++|+.....+++...++.++++
T Consensus 231 aA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl 310 (373)
T PF00282_consen 231 AAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTL 310 (373)
T ss_dssp ETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSS
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccc
Confidence 99999888788888888899999999999999999999999999999988877787788999866544555667889999
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS 223 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~ 223 (310)
++||++.++++|.+++.+|.+|+.+++++..++++++++.|++.++++++.++..++|||++.
T Consensus 311 ~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 311 QGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp SSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred cccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999974
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=290.42 Aligned_cols=287 Identities=17% Similarity=0.275 Sum_probs=232.8
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHH---HHhCc--
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVA---KQFGI-- 75 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~---~~~g~-- 75 (310)
|||+++|++..+++.||+|++ ++||+++|++.|.+..+.+..|..||.+.++|.+|++|||++|+++| +++|+
T Consensus 237 KAa~ilGlG~~~vv~VpvD~~--~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~ 314 (608)
T TIGR03811 237 KAADIIGIGLDQVIPVPVDSN--YRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYF 314 (608)
T ss_pred HHHHHcCCCcccEEEeecCCC--CcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCce
Confidence 789999999999999999964 59999999999998877777788899999999999999999999999 67898
Q ss_pred EEEeeccccccc--ccC------------------------------hhhhhhhcCCCCCCeeeeecccccccccceEEE
Q 046506 76 WVHVDAAYAGSA--CIC------------------------------PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCL 123 (310)
Q Consensus 76 ~l~vD~a~~~~~--~~~------------------------------~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l 123 (310)
|+|||||+|+++ +.. ++++....+++.+||+++++|||++.|++||++
T Consensus 315 ~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~l 394 (608)
T TIGR03811 315 YLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGI 394 (608)
T ss_pred eEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEE
Confidence 699999998864 221 234455678889999999999999999999999
Q ss_pred EEeCchhHHhhhccCCcccccccccccccc-CCCCceeccCCC-cchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHH
Q 046506 124 WVKDPSDLVNSLSTNPEYLKNKATESKQVV-DYKDWQITLSRR-FRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFER 199 (310)
Q Consensus 124 ~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~ 199 (310)
++|++. +.+.+...++|++.... ..+ ....++++++|+ +.++++|++++.+ |.+|+.++++++.++++++.+
T Consensus 395 l~Rd~~-~~~~~~~~a~Yl~~~~~---~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~ 470 (608)
T TIGR03811 395 VIQDIR-MRDVISYFATYVFEKGA---DIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYD 470 (608)
T ss_pred EEeCHH-HHHHHhcCcchhccccc---cCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999996 45777788899976432 222 346678888886 6799999999998 999999999999999999999
Q ss_pred HHcC------CCCeEE--ecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh------cCcEEE
Q 046506 200 LVGS------DKRFEV--VFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA------SGKAYM 265 (310)
Q Consensus 200 ~L~~------~~~~~v--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~g~~~~ 265 (310)
.|++ .+.+++ +.+|+.++|+|++.+.+ ..+.+.++.+|+.+.+++.- ..-+.+
T Consensus 471 ~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g-------------~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~ 537 (608)
T TIGR03811 471 FLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKG-------------NDDLVKMNKLNHAFYDYASYVKGSIYNNEFIT 537 (608)
T ss_pred HHHhcccccCCCCeeEEecCCCCcceEEEEEecCC-------------CccHHHHHHHHHHHHHhhccccCCCCCcceEe
Confidence 9987 456776 67899999999998753 12446678999999998862 222444
Q ss_pred EEeEE--------------------------CCEeEEEEEccCCCCCH-HHHHHHHHHHHHHHHHHhh
Q 046506 266 THAVL--------------------------GGIYAIRFAAGATLTEE-RHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 266 ~~~~~--------------------------~~~~~iRis~~~~~~t~-edi~~li~~l~~~~~~~~~ 306 (310)
+.+.. ....++|.++++|+.++ +.++.+++.|++...+..+
T Consensus 538 s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~~~ 605 (608)
T TIGR03811 538 SHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEKLE 605 (608)
T ss_pred eecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHHHH
Confidence 43322 12469999999888555 7888888888887765544
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.20 Aligned_cols=265 Identities=16% Similarity=0.259 Sum_probs=217.4
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh------C
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF------G 74 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~------g 74 (310)
|+++++|+. ++.||+|++ .+.+|+++|+++|+++ +.+|++++++|++|+++||++|+++|+++ |
T Consensus 153 ka~~~lg~~---v~~i~~d~~-~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~ 222 (431)
T TIGR01788 153 KFARYFDVE---LREVPMDPG-RYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWD 222 (431)
T ss_pred HHHHHcCce---eEEEecCCC-ceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCC
Confidence 567788887 999999973 3589999999999876 46999999999999999999999999999 9
Q ss_pred cEEEeecccccccccCh--hhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccc
Q 046506 75 IWVHVDAAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 75 ~~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
+|+|||+||+++++++. ..+. ...+.++|++++|+|||+++|+|+|+++++++..+.+.+...++|+....
T Consensus 223 ~~~HvDaaq~g~~~p~~~~~~~~-~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~------ 295 (431)
T TIGR01788 223 IPIHVDAASGGFIAPFVYPDLEW-DFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDE------ 295 (431)
T ss_pred ceEEEecccHHHHHHHhCCCchh-hcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCC------
Confidence 99999999998876542 2221 11356799999999999999999999999987555455666677875421
Q ss_pred cCCCCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhh
Q 046506 153 VDYKDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~ 230 (310)
.+.+++++|++ .+++.|+.++.+|..|++++.+++.++++++.++|+++|+++++.+ +..++++|++.+.+
T Consensus 296 ---~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~---- 368 (431)
T TIGR01788 296 ---PTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDA---- 368 (431)
T ss_pred ---CCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCC----
Confidence 23578889986 7789999999999999999999999999999999999999999987 78999999998631
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcE---EEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKA---YMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
. .+..+.++.++|.++|.. +..|..+++...+|++++ ++++++.++.|++.|+++...+
T Consensus 369 -----------~---~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~-~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 369 -----------D---PGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVR-EGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred -----------C---CCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEec-CCCCHHHHHHHHHHHHHHHHhh
Confidence 0 011135788888888865 344555678889999976 6899999999999999987654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=271.07 Aligned_cols=245 Identities=18% Similarity=0.187 Sum_probs=200.5
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCc-----
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGI----- 75 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~----- 75 (310)
|||+++|++ ++.||++++ +.||+++|+++|.+++ .+|.+|+++.++|.+|++|||++|+++|+++|+
T Consensus 193 KAa~llgi~---~~~Vp~d~~--g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~i 264 (470)
T PLN02263 193 KAARMYRME---CVKVDTLVS--GEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRF 264 (470)
T ss_pred HHHHhcCCc---ceEeccCCC--CcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCe
Confidence 799999997 999999874 5999999999998754 258899999999999999999999999999997
Q ss_pred EEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 76 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 76 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|+|||||+|++.+++....+..+....+||+++++|||+++|++||+++++++. + +.+...+.|+....
T Consensus 265 wlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~d--------- 333 (470)
T PLN02263 265 YIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASRD--------- 333 (470)
T ss_pred eEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCCC---------
Confidence 999999999988866433322333445999999999999999999999999753 3 56667788887542
Q ss_pred CCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
.+++++|++ .++++|++++.+|.+|+.++++++.++++++.+.|++. ++.++.+|..++|+|..+..
T Consensus 334 --~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~~--------- 401 (470)
T PLN02263 334 --ATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPKD--------- 401 (470)
T ss_pred --CCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCch---------
Confidence 367899996 57999999999999999999999999999999999987 78777788888998864321
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+. ..+|. .++. ....+|++++ ++.+.+.+|.|++.|++..+.
T Consensus 402 -----------------~~----~~~gW-~L~~----~~~~~Hivvm-phv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 402 -----------------EE----FVRRW-QLAC----QGNIAHVVVM-PSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred -----------------HH----hhcce-EEcc----CCCcEEEEEc-CCCCHHHHHHHHHHHHHHHhh
Confidence 11 12332 3332 1246899988 788999999999999887753
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=272.94 Aligned_cols=274 Identities=25% Similarity=0.405 Sum_probs=213.4
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|+|+++|++ ++.+|.+++ .+.||+++|+++|++.+..+ .|+.+.++|.+|.+|||++|+++|+++++|+|||
T Consensus 172 Kaa~~lG~~---~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVD 243 (460)
T COG0076 172 KAARYLGLG---LRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVD 243 (460)
T ss_pred HHHHHhCCC---ceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEE
Confidence 789999999 888888875 57999999999999987633 5999999999999999999999999999999999
Q ss_pred cccccccccChhhhhh-hcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHF-IDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
+|.|++.+++.++... ..+++++||+++++|||+++|.|||++++++++.+.+.+....+|+.... ...++
T Consensus 244 AA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~--------~~~~t 315 (460)
T COG0076 244 AAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGG--------IPNFT 315 (460)
T ss_pred ccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCC--------cCcee
Confidence 9999999988777665 67888999999999999999999999999999767677666666766531 23456
Q ss_pred eccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
+.++|.. .++++|+.++.+|.+||.++.+++.++++++++.|++.+.++++++|..++|+|+.++.. + .
T Consensus 316 i~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~--------~--~ 385 (460)
T COG0076 316 ILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDE--------D--T 385 (460)
T ss_pred EeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcc--------c--c
Confidence 7777775 789999999999999999999999999999999999998899999999999999995521 0 0
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.....+..+..+..+......+|...+..+...++...++.+.+..++.++ +.+...+....
T Consensus 386 ~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 447 (460)
T COG0076 386 LADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE-ESLLALIEEPG 447 (460)
T ss_pred hhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeehhhcchhhhhhhh-HHHHHHhhhhh
Confidence 000111112222223333333444444445556677777776766666666 55555555433
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=263.90 Aligned_cols=241 Identities=20% Similarity=0.248 Sum_probs=194.7
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC-----c
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG-----I 75 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g-----~ 75 (310)
|+++++|++ ++.||+++++ .+|+++|+++|++++. .|.+|++++++|++|+++||++|+++|++|| +
T Consensus 126 kaa~~lg~~---~~~V~~d~~g--~id~~~L~~~i~~~~~---~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~ 197 (374)
T PLN03032 126 KAARMYRME---AVKVPTLPSG--EIDYDDLERALAKNRD---KPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRF 197 (374)
T ss_pred HHHHHcCCC---CeEeeeCCCC--cCcHHHHHHHHHHcCC---CCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCe
Confidence 678899998 8999999754 9999999999987531 4778999999999999999999999999996 5
Q ss_pred EEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 76 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 76 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|+|||+|++++.+++....+..+...++|++++|+|||+++|.|||+++++++. + +.+...++|+...
T Consensus 198 ~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~~~~~~~Yl~~~---------- 265 (374)
T PLN03032 198 YIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KALSQNVEYLNSR---------- 265 (374)
T ss_pred eEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh-h-HhhccCCcccCCC----------
Confidence 999999999988876332221222246999999999999999999999999763 3 4455667887643
Q ss_pred CCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
+.++++||+ +.++++|++++.+|.+|+.++.+++.++++++.+.|++. +++++.+|..++|+|..+..
T Consensus 266 -d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~~--------- 334 (374)
T PLN03032 266 -DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPMD--------- 334 (374)
T ss_pred -CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCCc---------
Confidence 347899997 678999999999999999999999999999999999986 88887788888888866542
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..+. +| ..++.. ...+|++++ ++++++.+|.|++.|++
T Consensus 335 ----------------~~~~-----~~-w~l~~~----~~~~hi~vm-~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 335 ----------------EAFI-----KK-WQLACE----GDIAHVVVM-PNVTVEKLDEFVEELVE 372 (374)
T ss_pred ----------------HhHh-----he-eeeccc----CCEEEEEEC-CCCCHHHHHHHHHHHhc
Confidence 1121 23 233321 237999988 78999999999998875
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=261.51 Aligned_cols=244 Identities=20% Similarity=0.299 Sum_probs=195.8
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC---cEE
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG---IWV 77 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g---~~l 77 (310)
|+++++|++ ++.||++++ +.+|+++|+++|+++ +.+|.+|++++++|++|.++|+++|+++|++|| +|+
T Consensus 125 ka~~~lg~~---~~~V~~~~~--g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~l 196 (380)
T PRK02769 125 KIARLLRIK---SRVITSLPN--GEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYI 196 (380)
T ss_pred HHHHHcCCC---CceeccCCC--CcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEE
Confidence 578889998 778898864 589999999999876 334779999999999999999999999999998 699
Q ss_pred EeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 78 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
||||||+++.+++.......+...++|++++|+|||+++|.|||+++++++. +.. +....+|+... +
T Consensus 197 HVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~~~-~~~~~~yl~~~-----------d 263 (380)
T PRK02769 197 HADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-VER-ISVDVDYIGSR-----------D 263 (380)
T ss_pred EEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-hhh-cccCccccCCC-----------C
Confidence 9999999998876443222222236999999999999999999999999763 333 33345555432 3
Q ss_pred ceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.+++++|+ +.++++|++++.+|.+|++++.+++.++++++.++|++. +++++.+|..++|+|..+.
T Consensus 264 ~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~------------ 330 (380)
T PRK02769 264 QTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPS------------ 330 (380)
T ss_pred CCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCC------------
Confidence 46788887 578999999999999999999999999999999999885 9999989999999996443
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.++. ++ ..+++. ...+|++++ +++++|.||.|++.|.+....
T Consensus 331 --------------~~~~-----~~-w~l~~~----~~~~hi~~~-~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 331 --------------ERIW-----KK-WHLATS----GNQAHIITM-PHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred --------------HHHH-----hC-eeEccc----CCEEEEEEC-CCCCHHHHHHHHHHHHHHHhc
Confidence 1222 23 233322 248999988 799999999999999887654
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=259.94 Aligned_cols=252 Identities=17% Similarity=0.165 Sum_probs=198.2
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++++|.+++ +.+++|+++++|++.| ++|++++.+|.+|++.|+++|+++||++|++++||+||+
T Consensus 134 ~~Ga~---v~~i~~~~~--g~~~~~~~~~~i~~~T------klvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~ 202 (405)
T COG0520 134 RTGAK---VRVIPLDDD--GLLDLDALEKLITPKT------KLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQA 202 (405)
T ss_pred hcCcE---EEEEecCCC--CCcCHHHHHHhcCCCc------eEEEEECccccccccchHHHHHHHHHHcCCEEEEECccc
Confidence 34666 999999854 5999999999988875 499999999999999999999999999999999999999
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccc-c-----cccccCCCCc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKAT-E-----SKQVVDYKDW 158 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~-~-----~~~~~~~~~~ 158 (310)
+++.+.+... .++|++++|+|||+++|.|+|++|++++. +.+. +++..+... + ....+....+
T Consensus 203 ~~h~~idv~~------l~~Df~afsgHKwl~gP~GiGvLy~r~~~-l~~l----~P~~~gg~~~~~~~~~~~~~~~~~p~ 271 (405)
T COG0520 203 AGHLPIDVQE------LGCDFLAFSGHKWLLGPTGIGVLYVRKEL-LEEL----EPFLGGGGMIEYVSRDEGVTLAELPL 271 (405)
T ss_pred cCccCCCchh------cCCCEEEEcccccccCCCceEEEEEchHH-Hhhc----CCcccCCCceeeecccccccccCcch
Confidence 9999887532 26999999999999999999999999773 3332 222222221 1 1122334556
Q ss_pred eeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhh
Q 046506 159 QITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 159 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~ 233 (310)
.++.|.+ ...+++.++++.+...+++++.++.+++++++.+.|+++|++++++++ +.++++|.+.+...
T Consensus 272 rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~------ 345 (405)
T COG0520 272 RFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHP------ 345 (405)
T ss_pred hhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCH------
Confidence 6676666 345777888998888899999999999999999999999999999875 68999999998531
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAV--------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.++...|.++|+....+.. .+-...+|+|+. +|||+||||+|+++|+++..
T Consensus 346 -----------------~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~-~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 346 -----------------HDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLH-LYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred -----------------HHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEe-ecCCHHHHHHHHHHHHHHhh
Confidence 5678888888833222211 111344999966 78999999999999998754
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=242.08 Aligned_cols=234 Identities=32% Similarity=0.589 Sum_probs=191.0
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..+|.. ++.+|+++++ .+|+++|+++|.+....+..+.++++++++|++|.++|+++|+++|+++|+|+|+|+
T Consensus 111 ~~~~~g~~---~~~v~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~ 185 (345)
T cd06450 111 AAAYLDVK---VRLVPVDEDG--RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA 185 (345)
T ss_pred HHHHHhcC---eEEeeeCCCC--CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec
Confidence 34556776 9999998754 899999999998755444456788889999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
||+.+..+.+........+.++|++++++|||+++|.|+|+++++
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------------------- 230 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------------------- 230 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------------
Confidence 999888766544433334457999999999999999999987654
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
++++|++++.++.+++++++++..++++++.+.|+++++++++.+++.++++|.+.+..
T Consensus 231 ------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~--------------- 289 (345)
T cd06450 231 ------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSV--------------- 289 (345)
T ss_pred ------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcc---------------
Confidence 34567888888899999999999999999999999999999887788899999987620
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..+..+.++.++|.++|.+++.+.......++|+|+++++||++||++++++|++
T Consensus 290 ---~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 290 ---KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred ---hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 0012235788888888777777665556789999988766899999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=222.12 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=180.8
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|++ |.++|++.+| .+|+++|+++|+++| .+|++.+.+|++|+++||++|+++|+++|+++|||++|+.
T Consensus 114 ~g~~---Vtyl~V~~~G--~v~~e~L~~al~~~T------~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~ 182 (386)
T COG1104 114 QGFE---VTYLPVDSNG--LVDLEQLEEALRPDT------ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAV 182 (386)
T ss_pred cCCe---EEEeCCCCCC--eEcHHHHHHhcCCCc------eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhc
Confidence 4887 9999999855 999999999999874 4999999999999999999999999999999999999999
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
|-++.+... .++|++++|+||+ ++|.|+|++|+++.-.+ .+.+.+++ .+.++|
T Consensus 183 Gkipi~~~~------~~vD~ls~SaHK~-~GpkGiGaLyv~~~~~~-------~p~i~GGg-------------QE~g~R 235 (386)
T COG1104 183 GKIPIDLEE------LGVDLLSFSAHKF-GGPKGIGALYVRPGVRL-------EPLIHGGG-------------QERGLR 235 (386)
T ss_pred Cceeccccc------cCcceEEeehhhc-cCCCceEEEEECCCCcc-------CceeccCc-------------CCCCCC
Confidence 999887432 1499999999995 78999999999665332 13333332 355555
Q ss_pred cch------HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC-CCeEEecCC---CceEEEEEEcCCcchhhhhhhh
Q 046506 166 FRS------LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD-KRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 166 ~~~------~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
... .++..+++ +..+.++....+...+.++|.+.|.+. |.+.+.+.+ -.++++|.+++..
T Consensus 236 sGTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~--------- 305 (386)
T COG1104 236 SGTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE--------- 305 (386)
T ss_pred CCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc---------
Confidence 432 33344444 346778888899999999999999975 888887653 3567888888742
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--------------------CCEeEEEEEccCCCCCHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL--------------------GGIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------------------~~~~~iRis~~~~~~t~edi~~li~ 295 (310)
.+.+.-.|...|+ +++.+.. ...+.||||+. .+||+||||++++
T Consensus 306 --------------gE~ll~~L~~~gI-~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g-~~tt~eei~~~~~ 369 (386)
T COG1104 306 --------------GESLLLALDLAGI-AVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLG-RFTTEEEIDAAAE 369 (386)
T ss_pred --------------HHHHHHhccccCe-EEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcC-CCCCHHHHHHHHH
Confidence 1233344444443 3332211 12589999977 6899999999999
Q ss_pred HHHHHHHHHhh
Q 046506 296 VVQEHLEALLS 306 (310)
Q Consensus 296 ~l~~~~~~~~~ 306 (310)
+++++.+++++
T Consensus 370 ~l~~~i~~lr~ 380 (386)
T COG1104 370 ALKEIIKRLRE 380 (386)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=219.55 Aligned_cols=249 Identities=20% Similarity=0.306 Sum_probs=184.4
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++.+|++ ++.||.+++ +.+|+++|+++|++. +..|++++++|.+|.+.|+++|+++|+++|+++|||+
T Consensus 120 ~~~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~ 188 (371)
T PRK13520 120 AADMLGVE---LRRAPLDDD--YRVDVKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDA 188 (371)
T ss_pred HHHHcCce---EEEecCCCC--CcCCHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEe
Confidence 45667887 999998864 489999999999765 3367777888999999999999999999999999999
Q ss_pred ccccccccChhhh-hhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFR-HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
||+++.++..... .......++|++++++|||+++|.++|+++++++..+ +.+....+|+.... .+..
T Consensus 189 a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~----------~~~~ 257 (371)
T PRK13520 189 AFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKK----------QATL 257 (371)
T ss_pred cchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHH-HhhcccCccccCCC----------Ccce
Confidence 9987765432111 0111234699999999999998999999998877544 33332334433221 1122
Q ss_pred ccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
.++++ ...++++++++.++.++++++.++..++++++.+.|+++ +++++.++..+++++.+.+.
T Consensus 258 ~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~~-------------- 322 (371)
T PRK13520 258 TGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPNP-------------- 322 (371)
T ss_pred EeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCCH--------------
Confidence 33443 345778889988888999999999999999999999987 88855466777888776532
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+++.+.|.++|. .+... ....++|+|++ +++|++||++++++|++++.
T Consensus 323 -----------~~v~~~L~~~gi-~v~~~--~~~~~iRis~~-~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 323 -----------DEVREKLRERGW-RVSVT--RCPEALRIVCM-PHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred -----------HHHHHHHHHCCc-eeccC--CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHhh
Confidence 467777777764 33322 23467999966 68999999999999988653
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=216.17 Aligned_cols=252 Identities=15% Similarity=0.138 Sum_probs=181.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ +.+|+++|+++|+++ +.+|++++.+|.+|.+.|+++|+++|+++|++++||++
T Consensus 134 ~~~~g~~---v~~v~~~~~--~~~d~~~l~~~i~~~------t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a 202 (406)
T PRK09295 134 CARVGAE---LRVIPLNPD--GTLQLETLPALFDER------TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGA 202 (406)
T ss_pred HHHcCcE---EEEEecCCC--CCCCHHHHHHhcCCC------cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcc
Confidence 3456776 999998864 479999999999764 45899999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccc-cc-----ccccCCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKAT-ES-----KQVVDYK 156 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~-~~-----~~~~~~~ 156 (310)
|+.+..+.+.. . .++|++++|+|| +++|.|+|+++++++ .++. + +++..+... .. ...+...
T Consensus 203 ~~~g~~~~~~~-----~-~~~D~~~~s~~K-~~gp~G~G~l~~~~~-~~~~-~---~~~~~g~~~~~~~~~~~~~~~~~~ 270 (406)
T PRK09295 203 QAVMHHPVDVQ-----A-LDCDFYVFSGHK-LYGPTGIGILYVKEA-LLQE-M---PPWEGGGSMIATVSLTEGTTWAKA 270 (406)
T ss_pred cccCccccCch-----h-cCCCEEEeehhh-ccCCCCcEEEEEchH-hHhh-C---CCcccCCceeeeeecCCccccCCc
Confidence 98887665421 1 258999999999 556889999999765 3322 1 223222211 00 0000111
Q ss_pred CceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhh
Q 046506 157 DWQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 157 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~ 233 (310)
...++.|++ ...+++.++++.+...+++++.++..++++++++.|.++++++++++. ..++++|.+....
T Consensus 271 ~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~------- 343 (406)
T PRK09295 271 PWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH------- 343 (406)
T ss_pred hhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcC-------
Confidence 223444444 234677888888766788999999999999999999999999998753 4678899876531
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAV---------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++...|.+.|+ .+.... .+..+.+|+|++ ++||++|||+++++|+++..
T Consensus 344 ----------------~~~~~~~L~~~gI-~v~~g~~c~~~~~~~~~~~~~iRiS~~-~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 344 ----------------AYDVGSFLDNYGI-AVRTGHHCAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred ----------------HHHHHHHHHhCCe-EEeccccchHHHHHHHCCCCEEEEEcc-CCCCHHHHHHHHHHHHHHHH
Confidence 1345566666654 333211 112357999955 78999999999999998754
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=213.74 Aligned_cols=251 Identities=12% Similarity=0.122 Sum_probs=179.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++.++.+++ +.+|+++|++++++. +.++++++++|++|.+.|+++|+++|+++|++++||+||
T Consensus 108 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~ 176 (376)
T TIGR01977 108 EQIGVE---ITIVKCDNE--GLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQ 176 (376)
T ss_pred HHcCcE---EEEEecCCC--CCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 344776 889998864 489999999999653 458889999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+..+.+... .++|++++++|||+++|.|+|+++++++..+.........+.... ..........++.+
T Consensus 177 ~~g~~~~~~~~------~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~ 246 (376)
T TIGR01977 177 TAGVIPIDMTE------LAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSAL----IDQPSELPDRFESG 246 (376)
T ss_pred ccCccCCCchh------cCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCcccccc----ccccccchhhccCC
Confidence 98887665321 269999999999999999999999988753222111100000000 00000001112223
Q ss_pred CC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----CceEEEEEEcCCcchhhhhhhhcc
Q 046506 164 RR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----HFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 164 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.+ ...+++.++++.+...|.+.+.+++.++++++++.|.++++++++.+. ..++++|.+.+.+
T Consensus 247 t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------- 315 (376)
T TIGR01977 247 TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGID----------- 315 (376)
T ss_pred CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCC-----------
Confidence 22 234666778888877889999999999999999999988999988642 3578888875432
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-----------CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVL-----------GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-----------~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..++.+.|.+..++++..... ...+.+|+|++ +++|++||++++++|++
T Consensus 316 ------------~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~-~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 316 ------------SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLG-YFNTEEEIEKLLEALSE 375 (376)
T ss_pred ------------HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecC-CCCCHHHHHHHHHHHhh
Confidence 135777777662344433211 12468999955 78999999999999976
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=212.37 Aligned_cols=246 Identities=21% Similarity=0.310 Sum_probs=179.6
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++..|+. ++.+|.+++ +.+|+++|++++.+.+ ..+++.+++|++|.++|+++|+++|+++|+++|||+
T Consensus 122 ~~~~~G~~---~~~v~~~~~--~~~d~~~l~~~l~~~~------~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~ 190 (373)
T TIGR03812 122 AAEMLGLE---LRYAPLDED--YTVDVKDVEDLIDDNT------IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDA 190 (373)
T ss_pred HHHHcCCe---EEEEeeCCC--CCcCHHHHHHHHhhCc------EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEc
Confidence 45667887 999999864 5899999999997653 245555678899999999999999999999999999
Q ss_pred ccccccccChhh----hhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 82 AYAGSACICPEF----RHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 82 a~~~~~~~~~~~----~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
||+++..+.... ........++|++++++|||+.+|.++|++++++++.+. .+....+|+.... .
T Consensus 191 a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~----------~ 259 (373)
T TIGR03812 191 AFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK-YLSVDAPYLTVKK----------Q 259 (373)
T ss_pred CchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh-hhcccCcccCCCC----------C
Confidence 998765432210 011111236899999999998889889988877776543 3322233433221 1
Q ss_pred ceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
...+++++ ...++++++++.++.++++++.+++.++++++++.|+++ +++.+.++..++++|.+.+.
T Consensus 260 ~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~~----------- 327 (373)
T TIGR03812 260 ATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDDP----------- 327 (373)
T ss_pred cceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCCH-----------
Confidence 22334554 346778888988889999999999999999999999988 55544456778888876542
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.++.+.|.++|. ++... ....++|+|++ +++|++|+++++++|++
T Consensus 328 --------------~~v~~~L~~~gi-~v~~~--~~~~~iRis~~-~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 328 --------------EEVRKKLRDRGW-YVSVT--RCPKALRIVVM-PHVTREHIEEFLEDLKE 372 (373)
T ss_pred --------------HHHHHHHHHCCc-eeccC--CCCCEEEEEEE-CCCCHHHHHHHHHHHhh
Confidence 357777877764 44332 23568999976 57999999999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=214.13 Aligned_cols=256 Identities=14% Similarity=0.122 Sum_probs=182.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|+++++ .+|++++++.|++. +.+|++++.+|.+|.+.|+++|+++|+++|++++||++
T Consensus 143 a~~~g~~---v~~v~~~~~~--~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a 211 (424)
T PLN02855 143 AQKTGAV---LKFVGLTPDE--VLDVEQLKELLSEK------TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDAC 211 (424)
T ss_pred HHHcCCE---EEEEecCCCC--CcCHHHHHHHhccC------ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhh
Confidence 3456776 9999998654 69999999999764 45899999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccc---cccCCC--C
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK---QVVDYK--D 157 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~---~~~~~~--~ 157 (310)
|+.+..+.+.. . .++|++++++||+ ++|.|+|++++++. .+.+. +++..+...... ....+. .
T Consensus 212 ~~~g~~~~~~~-----~-~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~p~~~g~~~~~~~~~~~~~~~~~~ 279 (424)
T PLN02855 212 QSVPHMPVDVQ-----T-LGADFLVASSHKM-CGPTGIGFLWGKSD-LLESM----PPFLGGGEMISDVFLDHSTYAPPP 279 (424)
T ss_pred hhcCCcCCCch-----h-cCCCEEEeecccc-cCCCccEEEEEchh-hhhcC----CCEecCCCceeeeecCccccCCCh
Confidence 98777655421 1 2489999999994 67989999999865 33221 222222111000 000111 1
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC------CceEEEEEEcCCcchh
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR------HFAVVCFRVSPSAVMD 229 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------~~~~v~~~~~~~~~~~ 229 (310)
..++.|.+ ...+++.++++.+...|++++.+++.++++++++.|+++++++++++. +.++++|.+.+..
T Consensus 280 ~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~--- 356 (424)
T PLN02855 280 SRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIH--- 356 (424)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcC---
Confidence 12333333 234667777877766799999999999999999999999999998642 3578888876421
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV---------LGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.|.++.++.+.... .+-.+.+|+|++ ++||++||++++++|+++
T Consensus 357 --------------------~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~-~ynt~~di~~l~~~l~~~ 415 (424)
T PLN02855 357 --------------------PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLY-FYNTKEEVDAFIHALKDT 415 (424)
T ss_pred --------------------HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEec-cCCCHHHHHHHHHHHHHH
Confidence 13566777666234433211 111357999955 789999999999999999
Q ss_pred HHHHh
Q 046506 301 LEALL 305 (310)
Q Consensus 301 ~~~~~ 305 (310)
++.++
T Consensus 416 ~~~~~ 420 (424)
T PLN02855 416 IAFFS 420 (424)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=212.22 Aligned_cols=255 Identities=15% Similarity=0.108 Sum_probs=183.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++++|.+++ +.+|+++++++|+++ +.+|++++++|.+|.+.|+++|+++|+++|++++||++
T Consensus 130 ~~~~g~~---v~~v~~~~~--~~~d~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a 198 (401)
T PRK10874 130 AQQTGAK---VVKLPLGAD--RLPDVDLLPELITPR------TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGA 198 (401)
T ss_pred HHHhCCE---EEEEecCCC--CcCCHHHHHHhcCcC------cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECC
Confidence 3456776 999999763 589999999999765 45899999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccc-cccc--c--cCCCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKAT-ESKQ--V--VDYKD 157 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~-~~~~--~--~~~~~ 157 (310)
|+.+..+.+. ... ++|++++|+||+ ++|.|+|+++++++ .++.. +++...... .... . .....
T Consensus 199 ~~~g~~~~~~-----~~~-~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 266 (401)
T PRK10874 199 QGAVHFPADV-----QAL-DIDFYAFSGHKL-YGPTGIGVLYGKSE-LLEAM----SPWQGGGKMLTEVSFDGFTPQSAP 266 (401)
T ss_pred cccccccCCc-----hhc-CCCEEEEecccc-cCCCccEEEEEchH-HHhcC----CCeecCCcceEeeccCccCCCCCh
Confidence 9877765432 122 499999999995 56889999998755 33322 112211110 0000 0 00012
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
+.++.|.+ ...+++.++++.+...+++++.+++.++++++.+.|+++|+++++.++..++++|.+.+..
T Consensus 267 ~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~--------- 337 (401)
T PRK10874 267 WRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVH--------- 337 (401)
T ss_pred hhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcC---------
Confidence 23333433 2456777788777667788889999999999999999999999887777788888875421
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL--------GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.|.++|.....+... +..+.+|+|++ ++||++||++++++|+++++.+
T Consensus 338 --------------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~-~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 338 --------------HSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFA-PYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred --------------HHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEec-ccCCHHHHHHHHHHHHHHHHHh
Confidence 135666777776543332211 22468999966 5799999999999999987654
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=211.45 Aligned_cols=254 Identities=15% Similarity=0.078 Sum_probs=181.9
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++++|++++ +.+|+++|+++|+++ +.+|++++.+|.+|.+.|+++|+++|+++|++++||++
T Consensus 127 ~~~~g~~---v~~v~~~~~--~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a 195 (398)
T TIGR03392 127 AQQTGAK---VVKLPIGAD--LLPDIRQLPELLTPR------TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGA 195 (398)
T ss_pred HHHcCcE---EEEEecCCC--CCcCHHHHHHHhccC------ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhh
Confidence 3456776 999999864 479999999999765 34888999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccc-cccc----ccCCCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKAT-ESKQ----VVDYKD 157 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~-~~~~----~~~~~~ 157 (310)
|+.+..+.+.. . .++|++++|+||+ ++|.|+|+++++++ .++.. +++..+... .... .+....
T Consensus 196 ~~~~~~~~~~~-----~-~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 263 (398)
T TIGR03392 196 QGVVHGPPDVQ-----A-LDIDFYAFSGHKL-YGPTGIGVLYGKTE-LLEAM----PPWQGGGKMLSHVSFDGFIPQAVP 263 (398)
T ss_pred hhcCCCCCChh-----h-cCCCEEEEecccc-cCCCceEEEEEcHH-HHhhC----CCeecCCceEeeccccccccCCCh
Confidence 98776654321 1 1489999999995 56889999987654 33222 122211110 0000 000112
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
..++.|++ ...+++.++++.+...+++++.++..++++++++.|.++|++++..++..++++|.+.+..
T Consensus 264 ~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~--------- 334 (398)
T TIGR03392 264 HRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVH--------- 334 (398)
T ss_pred hhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcC---------
Confidence 23444443 2446777888877666888899999999999999999999999886667778888876421
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE---------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL---------GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---------~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+++.+.|.++|. .+..... +..+.+|+|++ ++||++||++++++|+++++.+
T Consensus 335 --------------~~~l~~~L~~~gI-~v~~g~~~~~~~~~~~g~~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 335 --------------HSDLAALLAESGI-ALRAGQHCAQPLMAALGVSGTLRASFA-PYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred --------------HHHHHHHHHhCCE-EEecCccchHHHHHHhCCCCEEEEEee-ccCCHHHHHHHHHHHHHHHHHh
Confidence 1356667766664 4432211 12468999966 6899999999999999987654
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=210.52 Aligned_cols=247 Identities=12% Similarity=0.073 Sum_probs=171.3
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhh
Q 046506 14 RAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEF 93 (310)
Q Consensus 14 ~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~ 93 (310)
+.++.++ .+.+|++++++.+...+ ..+.+|++++.++.+|.+.|+++|+++||++|++++||++|+++..+.+..
T Consensus 146 ~~~~~~~--~g~~~~~~l~~~~~~~~---~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~ 220 (406)
T TIGR01814 146 VQIEPRE--EETLRLEDILDTIEKNG---DDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLH 220 (406)
T ss_pred EEeccCC--CCccCHHHHHHHHHhcC---CCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccc
Confidence 4666654 34789999999986431 125689999999999999999999999999999999999999998877532
Q ss_pred hhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccc-c--ccccCCCCceeccCCC--cch
Q 046506 94 RHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATE-S--KQVVDYKDWQITLSRR--FRS 168 (310)
Q Consensus 94 ~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~-~--~~~~~~~~~~~~~~~~--~~~ 168 (310)
. .++|++++++|||+++|.| |++++..+.. .+..+..+.+....... . .......+..++.|.+ ...
T Consensus 221 ~------~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~ 292 (406)
T TIGR01814 221 D------WGVDFACWCTYKYLNAGPG-AGAFVHEKHA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSV 292 (406)
T ss_pred c------CCCCEEEEcCccccCCCCC-eEEEEehhhh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHH
Confidence 1 2699999999999987778 7777766532 22211111111110000 0 0001111223333433 234
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC----CCeEEecCC----CceEEEEEEcCCcchhhhhhhhccccc
Q 046506 169 LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD----KRFEVVFPR----HFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+++.++++.+...+.+++.++..++++++++.|.++ ++++++++. +.++++|.++ .+
T Consensus 293 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~-------------- 357 (406)
T TIGR01814 293 AALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP-------------- 357 (406)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC--------------
Confidence 566678887767789999999999999999999875 468888652 2467888776 21
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.+++.+.|.++|. ++.. ...+.||+|+++++||++||++++++|++++
T Consensus 358 ---------~~~~~~~L~~~gi-~v~~---~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 358 ---------GKAVFQALIKRGV-IGDK---REPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ---------HHHHHHHHHHCCE-EEec---cCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 1356777777764 4432 2346899997567899999999999998754
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=209.54 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=175.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.+|.++++ .+|+++++++|+++ +.+|++++.+|.+|.+.|+++|+++||++|++++||++|+
T Consensus 111 ~~g~~---v~~i~~~~~~--~~~~~~~~~~l~~~------~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~ 179 (371)
T PF00266_consen 111 RKGAE---VRVIPADPGG--SLDLEDLEEALNPD------TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQS 179 (371)
T ss_dssp HTTEE---EEEEEEGTTS--SCSHHHHHHHHHTT------ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTT
T ss_pred cchhh---hccccccccc--hhhhhhhhhhhccc------cceEEeecccccccEEeeeceehhhhhccCCceeEechhc
Confidence 45666 9999998754 89999999999755 4599999999999999999999999999999999999999
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccc-cccccCCCCceeccC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATE-SKQVVDYKDWQITLS 163 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~ 163 (310)
++..+.+... .++|++++++|| |++|.|+|+++++++. +.+..+..+......... ....+....+.++.|
T Consensus 180 ~g~~~id~~~------~~~D~~~~s~~K-l~gp~G~g~l~v~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G 251 (371)
T PF00266_consen 180 AGCVPIDLDE------LGADFLVFSSHK-LGGPPGLGFLYVRPEA-IERLRPAKPGGGYLDFPSLQEYGLADDARRFEGG 251 (371)
T ss_dssp TTTSS--TTT------TTESEEEEESTS-TTSSSTEEEEEEEHHH-HHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSS
T ss_pred cccccccccc------cccceeeecccc-cCCCCchhhheehhhh-hhccccccccccccccccchhccccccccccccc
Confidence 9998876421 269999999999 8999999999999863 333322221111000000 000011122233444
Q ss_pred CC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC----CCceEEEEEEcCCcchhhhhhhhcc
Q 046506 164 RR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP----RHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 164 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~----~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.+ ...+++..+++.+...|.+++.++..++++++++.|.+++++.++++ ...++++|.+.+.+.
T Consensus 252 T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------- 321 (371)
T PF00266_consen 252 TPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDA---------- 321 (371)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSH----------
T ss_pred ceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCH----------
Confidence 33 23456677888887779999999999999999999999999999763 246789999966431
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC---------CEeEEEEEccCCCCCHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLG---------GIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---------~~~~iRis~~~~~~t~edi~~l 293 (310)
.++.+.|.++| +.+...... -.+.+|+|++ ++||+||||+|
T Consensus 322 -------------~~~~~~L~~~~-I~~~~G~~~~~~~~~~~~~~~~iRvS~~-~~nt~~dv~~l 371 (371)
T PF00266_consen 322 -------------DDVVKYLEERG-IAVSTGSACAGPSLDILGMGGVIRVSLH-YYNTEEDVDRL 371 (371)
T ss_dssp -------------HHHHHHHHHHT-EEEEESTTTCHHHHHHHHTTTEEEEE-G-TTSSHHHHHHH
T ss_pred -------------HHHHHHHhhcC-EEEeccCcccHHHHHHhCCCCEEEEecc-CCCCHHHHhhC
Confidence 46777787775 444431110 1279999955 78999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=207.95 Aligned_cols=254 Identities=14% Similarity=0.138 Sum_probs=179.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|++++ +.+|+++|++++++. +.++++++++|.+|.+.|+++|+++|++||++++||++
T Consensus 129 ~~~~g~~---~~~v~~~~~--~~~~~~~l~~~i~~~------~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a 197 (403)
T TIGR01979 129 AERTGAT---LKFIPLDDD--GTLDLDDLEKLLTEK------TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGA 197 (403)
T ss_pred HHhcCcE---EEEEecCCC--CCCCHHHHHHHhccC------CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEch
Confidence 3456776 999999864 489999999999764 45899999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccc-----ccCCCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ-----VVDYKD 157 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~-----~~~~~~ 157 (310)
|+.+..+.+.. .. ++|++++++||++ +|.|+|+++++++ .++.. +++..+....... ......
T Consensus 198 ~~~g~~~~~~~-----~~-~~d~~~~s~~K~~-gp~G~g~l~~~~~-~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~ 265 (403)
T TIGR01979 198 QAVPHMPVDVQ-----AL-DCDFYVFSGHKMY-GPTGIGVLYGKEE-LLEQM----PPFLGGGEMIAEVSFEETTYNEAP 265 (403)
T ss_pred hhcCccccCcc-----cc-CCCEEEEeccccc-CCCCceEEEEchH-HHhcC----CCeecCCCceeecccCccccCCCh
Confidence 98877654321 12 5899999999976 5889999998755 33221 1222111100000 000011
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----CceEEEEEEcCCcchhhh
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----HFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~~ 231 (310)
..++.|++ ...++++++++.+...+.+++.+++.++++++++.|.++++++++.++ +.++++|.+.+..
T Consensus 266 ~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~----- 340 (403)
T TIGR01979 266 HKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVH----- 340 (403)
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcC-----
Confidence 22333333 134666777777766678899999999999999999999999998653 3678888875421
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV---------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.|.+.|. .+.... +...+.+|+|++ ++||++||++++++|+++.+
T Consensus 341 ------------------~~~~~~~L~~~gI-~v~~g~~~~~~~~~~~~~~~~iRiS~~-~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 341 ------------------PHDVGTILDEEGI-AVRSGHHCAQPLMRRFGVPATCRASFY-IYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred ------------------HHHHHHHHhhCCE-EEcchhhhhHHHHHHhCCCCEEEEEec-cCCCHHHHHHHHHHHHHHHH
Confidence 1346666766664 333211 122468999966 78999999999999998776
Q ss_pred HH
Q 046506 303 AL 304 (310)
Q Consensus 303 ~~ 304 (310)
.+
T Consensus 401 ~~ 402 (403)
T TIGR01979 401 FF 402 (403)
T ss_pred Hh
Confidence 54
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=203.50 Aligned_cols=241 Identities=13% Similarity=0.081 Sum_probs=173.7
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. ++.+|.+++ +.+|+++++++|+++ +.++++++.+|.+|.+.|+++|+++|+++|+++|||++|+.
T Consensus 109 ~G~~---v~~v~~~~~--g~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~ 177 (379)
T TIGR03402 109 QGYK---VTYLPVDEE--GRLDLEELRAAITDD------TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAV 177 (379)
T ss_pred cCCE---EEEEccCCC--CcCCHHHHHHhcCCC------cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccc
Confidence 4666 899998764 479999999999764 45888999999999999999999999999999999999998
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+..+.+.. . .++|++++++|| +++|.|+|++++++... ..|.+..... ....+.+..
T Consensus 178 g~~~~~~~-----~-~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~------~~p~~~g~~~----------~~~~~~gt~ 234 (379)
T TIGR03402 178 GKIPIDLK-----E-MNIDMLSLSGHK-LHGPKGVGALYIRKGTR------FRPLLRGGHQ----------ERGRRAGTE 234 (379)
T ss_pred cccccCcc-----c-CCCCEEEEcHHH-cCCCCceEEEEECCCCC------CCCcccCCcc----------CCCcCCCCc
Confidence 87765432 1 259999999999 67899999999986531 1222211110 001122222
Q ss_pred --cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCC---ceEEEEEEcCCcchhhhhhhhcccc
Q 046506 166 --FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 166 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
...+++.++++.. .++++++.++..++.+++++.|++ ++++++.+++. .++++|++....
T Consensus 235 ~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 300 (379)
T TIGR03402 235 NVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE------------- 300 (379)
T ss_pred cHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC-------------
Confidence 1234555666554 457788889999999999999985 89999886532 357878776432
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--------------------CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVL--------------------GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------------------~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..++...|.+.|+ .+..... ...+.+|+|++ ++||++|||+++++|++
T Consensus 301 ----------~~~~~~~l~~~gI-~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~-~~~t~~di~~~~~~l~~ 368 (379)
T TIGR03402 301 ----------GEAILLLLDMEGI-CASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLS-RYNTEEDIDYVLEVLPP 368 (379)
T ss_pred ----------HHHHHHhhccCCE-EEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcC-CCCCHHHHHHHHHHHHH
Confidence 1356666666664 3332110 01368999965 78999999999999999
Q ss_pred HHHHHhh
Q 046506 300 HLEALLS 306 (310)
Q Consensus 300 ~~~~~~~ 306 (310)
++..+.+
T Consensus 369 ~~~~~~~ 375 (379)
T TIGR03402 369 IIARLRA 375 (379)
T ss_pred HHHHHHh
Confidence 8877653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=202.43 Aligned_cols=243 Identities=15% Similarity=0.179 Sum_probs=172.7
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.||++++ +.+|+++|+++|++. +.++++++++|.+|.+.|+++|+++|+++|+++|+|++|+
T Consensus 112 ~~G~~---v~~v~~~~~--g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~ 180 (382)
T TIGR03403 112 SLGVE---VTYLPINEQ--GTITAEQVREAITEK------TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQA 180 (382)
T ss_pred HCCCE---EEEEecCCC--CCCCHHHHHHhcccC------CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhh
Confidence 45776 999999864 489999999999764 3488899999999999999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC-
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS- 163 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~- 163 (310)
.+..+.+... .++|++++++||| ++|.|+|++++++...+ .| .+..... .. ..+.+
T Consensus 181 ~g~~~~~~~~------~~~D~~~~s~~K~-~gp~G~g~l~vr~~~~~------~p-~~~g~~~-----~~----~~~~gt 237 (382)
T TIGR03403 181 IGKIPVDVQK------AGVDFLSFSAHKF-HGPKGVGGLYIRKGVEL------TP-LFHGGEH-----MG----GRRSGT 237 (382)
T ss_pred cCCCccCccc------cCCCEEEEcchhh-CCCCceEEEEECCCCCC------CC-cccCCCC-----CC----CcccCC
Confidence 8776654211 2599999999998 56999999999876321 12 1111110 00 01111
Q ss_pred CCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--C-ceEEEEEEcCCcchhhhhhhhcccc
Q 046506 164 RRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--H-FAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 164 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
... ..+++..+++.. .+.++...++..++++++.+.|+++++++++++. + .+++.|.+.+..
T Consensus 238 ~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 303 (382)
T TIGR03403 238 LNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVE------------- 303 (382)
T ss_pred cChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCC-------------
Confidence 112 223555666544 3457888899999999999999999999998653 2 457778776421
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------------EC-----CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAV--------------LG-----GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------------~~-----~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.+.+...|.++|+....+.. .+ ..+.+|+|++ ++||++|||+++++|+++
T Consensus 304 ----------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~-~~~t~~did~~~~~l~~~ 372 (382)
T TIGR03403 304 ----------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLS-RFTTEEEIDYTIEVFKKA 372 (382)
T ss_pred ----------HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 13455556666543322110 00 1368999966 689999999999999999
Q ss_pred HHHHhh
Q 046506 301 LEALLS 306 (310)
Q Consensus 301 ~~~~~~ 306 (310)
++++++
T Consensus 373 ~~~~~~ 378 (382)
T TIGR03403 373 VQRLRA 378 (382)
T ss_pred HHHHHh
Confidence 887653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=201.80 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=140.8
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. ++.+|++++ +.+|+++|+++|+++ +.++++++.+|.+|.+.|+++|+++||++|+++|||++|++
T Consensus 111 ~g~~---v~~v~~~~~--~~~d~~~l~~~i~~~------t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~ 179 (364)
T PLN02651 111 EGFE---VTYLPVKSD--GLVDLDELAAAIRPD------TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAV 179 (364)
T ss_pred cCCE---EEEEccCCC--CcCCHHHHHHhcCCC------cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhh
Confidence 4665 889998864 489999999999765 34899999999999999999999999999999999999999
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+..+.+.. .. ++|++++++||| ++|.|+|+++++++.. .+ ..|.+.. ... +..++.|++
T Consensus 180 g~~~~~~~-----~~-~~D~~~~s~hK~-~gp~G~g~l~v~~~~~-~~---l~p~~~g-~~~---------~~~~~~GT~ 238 (364)
T PLN02651 180 GKIPVDVD-----DL-GVDLMSISGHKI-YGPKGVGALYVRRRPR-VR---LEPLMSG-GGQ---------ERGRRSGTE 238 (364)
T ss_pred CCcccCcc-----cC-CCCEEEechhhh-CCCCceEEEEEcCCCC-CC---CCccccC-CCc---------cCCccCCCc
Confidence 98877532 22 599999999998 7899999999997632 11 1222221 110 011223333
Q ss_pred --cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecC--CC---ceEEEEEEcC
Q 046506 166 --FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFP--RH---FAVVCFRVSP 224 (310)
Q Consensus 166 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~--~~---~~~v~~~~~~ 224 (310)
...+++.++++.+.. +.+++.++..++++++.+.|++ +|+++++++ +. .++++|.+.+
T Consensus 239 ~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~ 304 (364)
T PLN02651 239 NTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY 304 (364)
T ss_pred cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC
Confidence 234677778877743 5588899999999999999985 689999875 22 4588998865
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-25 Score=195.45 Aligned_cols=260 Identities=18% Similarity=0.228 Sum_probs=206.6
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH-hCcEEEe
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ-FGIWVHV 79 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~-~g~~l~v 79 (310)
|+|+.+++. ++.||.+++ .+.+|+..+.+.+++++ ++++...+++.+|.++|+++|+++.-+ +++++||
T Consensus 185 K~a~yf~v~---l~~V~~~~~-~~~~D~~k~~~~i~eNt------i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHv 254 (491)
T KOG1383|consen 185 KAARYFEVE---LREVPLDEG-DYRVDPGKVVRMIDENT------IMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHV 254 (491)
T ss_pred HHHhhEEEE---EEeeecccc-ceEecHHHHHHHhccce------EEEEEEcCCCCccchhhHHHHHHHHHHHhCCceee
Confidence 678999998 999999984 79999999999999985 489999999999999999999999999 9999999
Q ss_pred ecccccccccChhhh--hhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 80 DAAYAGSACICPEFR--HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~--~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
|++.|++..+.-.+. .+..+..++-+++.++||...+|.|+|.++.++++.+...+...+.|.++- +..
T Consensus 255 Da~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~---------y~s 325 (491)
T KOG1383|consen 255 DACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI---------YAS 325 (491)
T ss_pred cccCccccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc---------ccC
Confidence 999998887621111 223445679999999999999999999999999987666555556666543 345
Q ss_pred ceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.++.+||+ ...++.|+++-.+|.+||.+..++|.+.++.++++|++++++.++++|..+++.+.-..-+
T Consensus 326 ~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~---------- 395 (491)
T KOG1383|consen 326 PTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVN---------- 395 (491)
T ss_pred cccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccc----------
Confidence 68899988 4568899999999999999999999999999999999999999998876665554322211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. -++.+.|.+.|+..-..+.+. .+.++++--++.++-.|+|+.-|++++.++.
T Consensus 396 -----------i--~elsd~l~~~GW~lnalq~P~---a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~ 448 (491)
T KOG1383|consen 396 -----------I--FELSDLLRKKGWILNALQFPA---AIHICVTRVHAREDVADRFVADIRKVVEELK 448 (491)
T ss_pred -----------h--hhhhHHHHhcCcCccccCCCC---ceEEEEEeeeccHHHHHHHHHHHHHHHHHHH
Confidence 0 367788888887554444332 4455555434455557899999999888875
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=198.71 Aligned_cols=242 Identities=13% Similarity=0.117 Sum_probs=167.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.++.+++ .+.+|+++|+++|++. +.+|++++++|++|.+.|+++|+++|++||++++||++
T Consensus 125 ~~~~g~~---~~~~~~~~~-~~~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 125 AERAGAK---VKWARVDEA-TGELHPDDLASLLSPR------TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred HHhcCCE---EEEEecccc-CCCcCHHHHHHhcCCC------ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 3456776 899998863 3589999999999764 34899999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|+.+..+.+.. . .++|++++++|||++ |. +|+++++++ .+.........+..... ...++.
T Consensus 195 ~~~~~~~~~~~-----~-~~~d~~~~s~~K~~g-~~-~G~l~~~~~-~~~~l~~~~~~~~~~~~----------~~~~~~ 255 (397)
T TIGR01976 195 HYAPHGLIDVQ-----A-TGADFLTCSAYKFFG-PH-MGILWGRPE-LLMNLPPYKLTFSYDTG----------PERFEL 255 (397)
T ss_pred hhccccCCCHH-----H-cCCCEEEEechhhcC-Cc-eEEEEEcHH-HHhhCCCccccCccCCC----------cchhcC
Confidence 97665443321 1 258999999999985 53 788887655 33322221112211111 112333
Q ss_pred CCC-c-chHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC----CCceEEEEEE
Q 046506 163 SRR-F-RSLKLWFVLRNYGVA--------------NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP----RHFAVVCFRV 222 (310)
Q Consensus 163 ~~~-~-~~~~~~~~l~~~~~~--------------~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~----~~~~~v~~~~ 222 (310)
|.+ + ..+++.++++.+... .+++..++..++++++++.|.++++++++.+ ..++++.|.+
T Consensus 256 gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (397)
T TIGR01976 256 GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTV 335 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEe
Confidence 433 2 335566666655322 3677788899999999999999888998764 2577888876
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-----------ECCEeEEEEEccCCCCCHHHHH
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV-----------LGGIYAIRFAAGATLTEERHVM 291 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----------~~~~~~iRis~~~~~~t~edi~ 291 (310)
.+.+ ..++.++|.++|........ ....+++|+|++ +++|++||+
T Consensus 336 ~~~~-----------------------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~ 391 (397)
T TIGR01976 336 HGLP-----------------------PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLA-HYNTAEEVD 391 (397)
T ss_pred CCcC-----------------------HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEee-ccCCHHHHH
Confidence 5421 13577778777654332211 123468999966 689999999
Q ss_pred HHHHHH
Q 046506 292 VAWTVV 297 (310)
Q Consensus 292 ~li~~l 297 (310)
+++++|
T Consensus 392 ~l~~~l 397 (397)
T TIGR01976 392 RLLEAL 397 (397)
T ss_pred HHHHhC
Confidence 999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=196.56 Aligned_cols=246 Identities=13% Similarity=0.110 Sum_probs=172.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. +++|+.+++ +.+|+++|+++|.+. +.+|++++++|++|.+.|+++|.++|++||+++|+|++|
T Consensus 110 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 110 ERTGAK---LKVVPVDDD--GQLDLEALEKLLTER------TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred hhcCcE---EEEeecCCC--CCcCHHHHHHHhcCC------ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 355776 999999854 489999999999764 458889999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccc-----ccccCCCCc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATES-----KQVVDYKDW 158 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~-----~~~~~~~~~ 158 (310)
+.+..+.+.. . .++|++++++|||+++ .|+|+++++++ .++... .+..+..... ...+.....
T Consensus 179 ~~~~~~~~~~-----~-~~~d~~~~s~~K~~~~-~g~g~~~~~~~-~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~ 246 (373)
T cd06453 179 SAGHMPVDVQ-----D-LGCDFLAFSGHKMLGP-TGIGVLYGKEE-LLEEMP----PYGGGGEMIEEVSFEETTYADLPH 246 (373)
T ss_pred hcCceeeecc-----c-cCCCEEEeccccccCC-CCcEEEEEchH-HhhcCC----CeecCCCccccccccccccCCCcc
Confidence 8776654321 1 2589999999999887 78898887654 332221 1111110000 001111111
Q ss_pred eeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhh
Q 046506 159 QITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 159 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~ 234 (310)
.+..+.+ ...++++.+++.+...+++++.++..++++++++.|.++++++++.++ ..++++|.+...+
T Consensus 247 ~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 318 (373)
T cd06453 247 KFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIH-------- 318 (373)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcC--------
Confidence 2222222 235677888888877789999999999999999999999899987543 4667778765421
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---------ECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAV---------LGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
..++.+.|.+.|.. +.+.. .+..+.+|+|++ +++|++|+|+++++|
T Consensus 319 ---------------~~~i~~~l~~~gi~-i~~g~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~~~~~l 373 (373)
T cd06453 319 ---------------PHDVATILDQYGIA-VRAGHHCAQPLMRRLGVPGTVRASFG-LYNTEEEIDALVEAL 373 (373)
T ss_pred ---------------HHHHHHHHHHCCEE-eccCccchhHHHHHhCCCCeEEEEec-CCCCHHHHHHHHhhC
Confidence 13567777776643 33211 112468999966 689999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=199.17 Aligned_cols=250 Identities=10% Similarity=-0.059 Sum_probs=170.0
Q ss_pred eecCC-CCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 4 QIVGI-DVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 4 ~~~g~-~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+.+|+ . ++.++.++++ .+|+++++. + ..|+++|++|.+|.+.|+++|++ |++|++++||++
T Consensus 111 ~~~g~~~---v~~~~~~~g~--~~d~~~i~~-----~------~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~ 172 (378)
T PRK03080 111 KQLKLED---PRVLEADYGS--LPDLSAVDF-----D------RDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDAT 172 (378)
T ss_pred hhcCCCC---ceEeccCCCC--CCCHhhcCC-----C------CCEEEEecCCccceeccchhhcc--ccCCCeEEEecc
Confidence 44577 5 8888887644 778776432 1 25899999999999999999999 899999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCC-----ccccccccccccccCCCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNP-----EYLKNKATESKQVVDYKD 157 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~-----~y~~~~~~~~~~~~~~~~ 157 (310)
|+.++.+.+.. .+|++++++|||+++|.|+|+++++++. +.+..+... .|+.... ......
T Consensus 173 qs~G~~pidv~--------~iD~~~~s~~K~l~~P~G~g~l~v~~~~-~~~~~p~~~~~~~~~~~~~~~-----~~~~~~ 238 (378)
T PRK03080 173 SAAFALPLDWS--------KLDVYTFSWQKVLGGEGGHGMAILSPRA-VERLESYTPARPIPKFFRLTK-----GGKAIE 238 (378)
T ss_pred cccccCCCCHH--------HCcEEEEehhhhCCCCCceEEEEECHHH-HHhhhcccCCCCCchhheecc-----chHHhh
Confidence 99999988742 2799999999999999999999998763 333222111 1111000 000011
Q ss_pred ceeccCCC--c---chHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-C--Cc-eEEEEEEcCCcc
Q 046506 158 WQITLSRR--F---RSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-R--HF-AVVCFRVSPSAV 227 (310)
Q Consensus 158 ~~~~~~~~--~---~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~--~~-~~v~~~~~~~~~ 227 (310)
..++.+.+ . ...++.++++.+... |++++.+|+.++++++++.|+++++++++.+ + +. .+++|.+++.+
T Consensus 239 ~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~- 317 (378)
T PRK03080 239 NSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ- 317 (378)
T ss_pred hhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch-
Confidence 11222222 1 123446688888776 8999999999999999999999877777642 2 23 47778765410
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.....++...+.+++.+...+......+.+|+|++ .+++++||++++++|+++++.++.
T Consensus 318 -------------------~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~-~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 318 -------------------AAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCG-PTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred -------------------HHHHHHHHHHHHHcCCeeccccccCCCCcEEEecC-CCCCHHHHHHHHHHHHHHHHHHhh
Confidence 01112344455555543322221112468999955 689999999999999998877643
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=200.73 Aligned_cols=242 Identities=14% Similarity=0.158 Sum_probs=165.5
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. ++.||++++ +.+|+++|+++|.++ +.++++++.+|++|.+.|+++|+++|+++|+++|||++|+.
T Consensus 115 ~g~~---v~~v~~~~~--~~~d~~~l~~~l~~~------~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~ 183 (402)
T TIGR02006 115 EGFE---VTYLPPKSN--GLIDLEELKAAIRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSV 183 (402)
T ss_pred cCCE---EEEEccCCC--CcCCHHHHHHhcCCC------CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhc
Confidence 4666 999999864 489999999999654 35899999999999999999999999999999999999998
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+..+.+.. . .++|++++++||++ +|.|+|+++++++... .. .|. ...... ...++.+..
T Consensus 184 g~~~~~~~-----~-~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~-~~---~~~-~~g~~~---------~~~~~~gt~ 242 (402)
T TIGR02006 184 GKIPINVN-----E-LKVDLMSISGHKIY-GPKGIGALYVRRKPRV-RL---EAL-IHGGGH---------ERGMRSGTL 242 (402)
T ss_pred CCcccCcc-----c-cCCCEEEEehhhhc-CCCceEEEEEccCCCC-CC---Cce-ecCCCc---------cCCccCCCc
Confidence 87765432 1 25999999999965 6999999999976321 11 111 111100 001122222
Q ss_pred --cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--Cc-eEEEEEEcCCcchhhhhhhhccccc
Q 046506 166 --FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HF-AVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 166 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~-~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
...+++..+++.+ .++++++.++..++++++++.|++++++.+.+++ +. +++.+.+....
T Consensus 243 ~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~-------------- 307 (402)
T TIGR02006 243 PTHQIVGMGEAFRIA-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVE-------------- 307 (402)
T ss_pred cHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcC--------------
Confidence 2234555666655 3578888999999999999999999999887532 22 22233333211
Q ss_pred hhHHHHHHHHHHHHHHHH----hcCcEEEEEeEE--------------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESIN----ASGKAYMTHAVL--------------GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~~--------------~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. +++...+. +.|.. |.+... ...+++|+|++ ++||++|||+++++|+++.+
T Consensus 308 -~--------~~~~~~l~~i~v~~G~~-c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~-~~~t~edid~l~~~l~~~~~ 376 (402)
T TIGR02006 308 -G--------ESLIMALKDLAVSSGSA-CTSASLEPSYVLRALGINDELAHSSIRFTIG-RFTTEEEIDYAVKLVKSAID 376 (402)
T ss_pred -H--------HHHHHhcCCEEEechhh-cCCCCCCccHHHHHcCCChhhcCceEEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12222221 12222 221100 11479999966 68999999999999999987
Q ss_pred HHh
Q 046506 303 ALL 305 (310)
Q Consensus 303 ~~~ 305 (310)
.++
T Consensus 377 ~~~ 379 (402)
T TIGR02006 377 KLR 379 (402)
T ss_pred HHH
Confidence 764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=192.27 Aligned_cols=256 Identities=10% Similarity=0.022 Sum_probs=173.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|+++++ .+|+++++++|+++++ +.+++++++.|.+|.+.|+++|+++||+||++++||++
T Consensus 97 a~~~g~~---~~~v~~~~~~--~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 97 AEYLGIP---HHVVDTGEVE--PPDVVEVEAILAADPA----ITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred HHHcCCc---eEEEeCCCCC--CCCHHHHHHHHhhCCC----ccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 4556776 9999998644 7999999999986432 34688899999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|+.+..+.+.. .. ++|++++++|||+++|.|.|+++++++. +.+......++..... ..+..... ..+
T Consensus 168 ~~~g~~~~~~~-----~~-~~D~~~~s~~K~l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~-~~~ 235 (363)
T TIGR02326 168 SSFGGIPIDIA-----EL-HIDYLISSANKCIQGVPGFGFVIARQAE-LAACKGNARSLSLDLY----DQWRCMED-NHG 235 (363)
T ss_pred ccccCcccchh-----hc-CccEEEecCccccccCCcceEEEECHHH-HHHhhcCCCceeecHH----HHHHHHhc-cCC
Confidence 98877665421 12 5899999999999999999999987663 3332211111100000 00000000 001
Q ss_pred CCC-----cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceE-EEEEEcCCcchhhhhh
Q 046506 163 SRR-----FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAV-VCFRVSPSAVMDKLKT 233 (310)
Q Consensus 163 ~~~-----~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~-v~~~~~~~~~~~~~~~ 233 (310)
.++ +...++.++++.+..+ +++++.+++.+++.++++.|+++ |++++.++ +.++ ++|.+.+..
T Consensus 236 ~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------- 307 (363)
T TIGR02326 236 KWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDP------- 307 (363)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCC-------
Confidence 111 2335566677666555 58889999999999999999887 78876543 3444 456654320
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
......+.+.|.++|. .+.+........+|++++ .+++.+|+++++++|++++.
T Consensus 308 -------------~~~~~~v~~~L~~~gi-~v~~g~~~~~~~iRi~~~-~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 308 -------------DYRFADFYQRLKEQGF-VIYPGKVSQVDCFRIGNI-GEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred -------------CCCHHHHHHHHHHCCE-EEECCcCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHhC
Confidence 0001356677777764 444332223468999966 46899999999999988753
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=195.01 Aligned_cols=259 Identities=12% Similarity=0.053 Sum_probs=180.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHH--HHHhCcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDV--AKQFGIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l--~~~~g~~l~vD 80 (310)
++..|+. ++.++.++++ .+|+++++++|++.+. ..+.+|++++++|.+|.+.|+++|+++ ||++|++++||
T Consensus 103 ~~~~g~~---v~~v~~~~~~--~~~~~~l~~~l~~~~~--~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD 175 (401)
T PLN02409 103 MQRLNFD---VDVVESPWGQ--GADLDILKSKLRQDTN--HKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVD 175 (401)
T ss_pred HHHcCCc---eEEEECCCCC--CCCHHHHHHHHhhCcC--CCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEE
Confidence 4456776 9999998643 5899999999986320 025589999999999999999999999 99999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhcc--CCccccccccccccccCCCCc
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST--NPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~ 158 (310)
++|+.+..+.+... .++|++++++|||+++|.|+|+++++++ .+.+.... .+.|..... ..++...
T Consensus 176 ~v~s~g~~~id~~~------~~~D~~~~s~~K~l~~P~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 243 (401)
T PLN02409 176 GVSSIGALDFRMDE------WGVDVALTGSQKALSLPTGLGIVCASPK-ALEASKTAKSPRVFFDWAD-----YLKFYKL 243 (401)
T ss_pred cccccCCccccccc------cCccEEEEcCccccCcCCCcceeEECHH-HHHHHhcCCCCCeecCHHH-----HHHHHhc
Confidence 99998777654211 1599999999999999999999998766 33333221 111221100 0000000
Q ss_pred -eeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---Cc-eEEEEEEcCCcchhhh
Q 046506 159 -QITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HF-AVVCFRVSPSAVMDKL 231 (310)
Q Consensus 159 -~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~-~~v~~~~~~~~~~~~~ 231 (310)
......+ ...+++.++++.+...|++++.++..++++++++.|.++ |++++.+. .. .+++|.++.. .
T Consensus 244 g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~-~---- 317 (401)
T PLN02409 244 GTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEG-I---- 317 (401)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCC-C----
Confidence 0000111 123566677777777899999999999999999999887 89887642 23 3445655431 0
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.+.++.++.+.+.... ....+|++.+. +++++|+..++++|++.+.++
T Consensus 318 ----------~-------~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g-~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 318 ----------D-------SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLG-NVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred ----------C-------HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCC-CCCHHHHHHHHHHHHHHHHHc
Confidence 0 1346666655555666655433 35789999775 799999999999999988764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=190.62 Aligned_cols=253 Identities=13% Similarity=0.031 Sum_probs=171.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|.. ++++|.+++ +.+|++++++.|++. .+.+|++++++|.+|.+.|+++|+++|+++|+++++|++
T Consensus 93 ~~~~g~~---~~~v~~~~~--~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~ 162 (356)
T cd06451 93 AERYGAD---VDVVEKPWG--EAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAV 162 (356)
T ss_pred HHHhCCC---eEEeecCCC--CCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeee
Confidence 3456766 999999864 489999999999762 145788888899999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhc--cCCccccccccccccccCCCCce-
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS--TNPEYLKNKATESKQVVDYKDWQ- 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~--~~~~y~~~~~~~~~~~~~~~~~~- 159 (310)
|+.+..+.+.. . .++|+++.++||||++|.|+|+++++++ .+..... ....+...... ...+....
T Consensus 163 ~~~g~~~~~~~-----~-~~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 231 (356)
T cd06451 163 SSLGGEPFRMD-----E-WGVDVAYTGSQKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDLLL----LLKYWGEGY 231 (356)
T ss_pred hhccCcccccc-----c-cCccEEEecCchhccCCCCcceeEECHH-HHHHHHhcCCCCceeecHHH----HHhhhcccC
Confidence 98765543321 1 2589999999999999999999998765 3333321 11111110000 00000000
Q ss_pred eccCCC-c-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC--ceEEE-EEEcCCcchhhhhhh
Q 046506 160 ITLSRR-F-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH--FAVVC-FRVSPSAVMDKLKTK 234 (310)
Q Consensus 160 ~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~--~~~v~-~~~~~~~~~~~~~~~ 234 (310)
...+.. . ...++.++++.+...+++++.++..++++++++.|.+. ++++..++. .+++. +.+.+. .
T Consensus 232 ~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~------- 302 (356)
T cd06451 232 SYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEG-V------- 302 (356)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCC-C-------
Confidence 111111 1 13455677777777788999999999999999999987 888875432 44443 333321 0
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEe-EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINAS-GKAYMTHA-VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
...++.+.|.++ |+ ++.+. .....+++|+|++ +++|+|||++++++|++++
T Consensus 303 --------------~~~~~~~~L~~~~gI-~~~~g~~~~~~~~iRis~~-~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 303 --------------DGDEVVRRLMKRYNI-EIAGGLGPTAGKVFRIGHM-GEATREDVLGVLSALEEAL 355 (356)
T ss_pred --------------CHHHHHHHHHHhCCE-EEecccccccCCEEEEecC-CCCCHHHHHHHHHHHHHHh
Confidence 013567777777 64 44432 2123469999966 6799999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=204.85 Aligned_cols=261 Identities=15% Similarity=0.077 Sum_probs=174.6
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++++|+. +++||++++ +.+|+++|+++|+++. ..+..|+++.+++..+..+||++|+++||++|+++||||
T Consensus 606 sa~~~G~~---vv~v~~d~~--G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDg 677 (954)
T PRK05367 606 SAVMAGMK---VVVVACDEN--GNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDG 677 (954)
T ss_pred HHHHCCCE---EEEECCCCC--CCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEEC
Confidence 46778887 999999865 4899999999997641 125677788877764445899999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceE-----EEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCC-----CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g-----~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|++.+....... +..++|++++++||||++|.|+| +++++.. +.+.+ |....... ...+
T Consensus 678 A~~~al~~l~~p-----g~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~l---pg~~v~~~----~~~~-- 741 (954)
T PRK05367 678 ANMNAQVGLARP-----GDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFL---PGHPVQIA----GGET-- 741 (954)
T ss_pred cChhhccCCCCh-----hhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccC---CCCccCcC----CCCC--
Confidence 997665444321 12369999999999998887755 8888743 22222 12111000 0000
Q ss_pred CceeccCCCc----chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhh
Q 046506 157 DWQITLSRRF----RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 157 ~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~ 230 (310)
......+.++ .+...|+.++.+|.+|+.+..+++..+|+|++++|++...+...++ +..+-+.|.+.+...
T Consensus 742 ~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~--- 818 (954)
T PRK05367 742 GIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKE--- 818 (954)
T ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccc---
Confidence 0011111222 2345788889999999999999999999999999987433322222 223334444432100
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
..+..+.++.++|.+.|...... .+...+.+|++++ -.++++|+|+|+++|+.+..+..
T Consensus 819 --------------~~g~~~~di~krL~d~G~~~~t~-~~pv~~~l~i~pt-E~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 819 --------------STGITVDDIAKRLIDYGFHAPTM-SFPVAGTLMVEPT-ESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred --------------cCCCCHHHHHHHHHHCCCeEeec-CCccCCEEEEEee-ecCCHHHHHHHHHHHHHHHHHHH
Confidence 00112357889998887543332 2334668999977 57999999999999999987764
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=194.33 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=167.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc-CChHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-DTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..|+. ++.+|++++ +.+|+++|+++|++++ .+|++++++ .+|.+ +|+++|+++||++|++++||+
T Consensus 178 ~~~~G~~---vv~v~~~~~--~~~D~e~L~~~i~~~t------~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~ 245 (481)
T PRK04366 178 AAMAGFK---VVEIPSNED--GLVDLEALKAAVGEDT------AALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDG 245 (481)
T ss_pred HHHcCCE---EEEeecCCC--CCcCHHHHHhhcccCC------eEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEe
Confidence 4567776 999999753 5899999999997653 366666655 78987 589999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccce-----EEEEEeCchhHHhhhccCCccccccccccccccCC-
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC-----CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY- 155 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-----g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~- 155 (310)
|+..+.+.... . +-.++|++++++||||++|.|+ |+++++++ .. +.+ |+.+...... .....+
T Consensus 246 a~~~~~~g~~~----~-~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~-~~-~~l---p~~~v~~~g~-~~~l~~~ 314 (481)
T PRK04366 246 ANLNAILGKAR----P-GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE-LA-PFL---PVPVVEKDGD-RYRLDYD 314 (481)
T ss_pred cChhhhcccCC----c-cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh-hH-hhC---CCCeeeccCC-ceeeccc
Confidence 99755332111 1 1126999999999999988655 57888765 22 332 2111111100 000011
Q ss_pred CCceeccCCC-----cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcCCcchh
Q 046506 156 KDWQITLSRR-----FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPSAVMD 229 (310)
Q Consensus 156 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~~~~~~ 229 (310)
++..+...++ ..++.+|..+..+|.+|+.++.+++..++++++++|+++ +++.. .+..+.+.|.......
T Consensus 315 r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~-- 390 (481)
T PRK04366 315 RPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKE-- 390 (481)
T ss_pred ccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccc--
Confidence 1111111111 124677788888999999999999999999999999986 33322 2223333333211000
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. +....++.++|.+.|......... ...+.+|+|++ .++|++|||+++++|+++..+..
T Consensus 391 ------------~----g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~-e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 391 ------------T----GVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPT-ETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred ------------c----CCCHHHHHHHHHHCCccCCccccccccCCeEEEccc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 011256888888887542211111 12458999966 68999999999999999987764
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=187.53 Aligned_cols=240 Identities=13% Similarity=0.043 Sum_probs=165.2
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++..++++. .+.+|++++++.+.+.+ | .+++++.++. |...|+++|+++|++||++++||+||+.|.+....
T Consensus 195 ~~~y~vd~~-~g~iD~d~l~~~~~~~~-----p-lvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~ 266 (493)
T PRK13580 195 QRSYGVDPD-TGLLDYDEIAALAREFK-----P-LILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKV 266 (493)
T ss_pred eEecccCcc-cCccCHHHHHHHHhhcC-----C-EEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceecccc
Confidence 344555543 46899999999998864 3 6777788887 44779999999999999999999999999887544
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLW 172 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (310)
+........++|++++++||+|++|.| |++++++. .. +.+....+|+++... ....++..
T Consensus 267 ~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~-~~L~~a~P~i~gg~l-----------------~p~iAA~a 326 (493)
T PRK13580 267 FTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YA-DAVDKGCPLVLGGPL-----------------PHVMAAKA 326 (493)
T ss_pred chhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH-HH-HHHhhCCCcccCCCc-----------------cHHHHHHH
Confidence 321111234699999999999988985 77776644 33 322222244443321 11223333
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHH
Q 046506 173 FVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNR 251 (310)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
.++..+......++.++.++++++|++.|.+. |+.++. ..+++++.+.+.+.. .-..
T Consensus 327 vAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~---------------------~~g~ 384 (493)
T PRK13580 327 VALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFG---------------------LTGR 384 (493)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHH---------------------HHHH
Confidence 34444433445678999999999999999986 898864 356788888886531 1113
Q ss_pred HHHHHHHhcCcEEEE----EeEECC---EeEEEEEccCC---CCCHHHHHHHHHHHHHHHHH
Q 046506 252 ELLESINASGKAYMT----HAVLGG---IYAIRFAAGAT---LTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 252 ~l~~~l~~~g~~~~~----~~~~~~---~~~iRis~~~~---~~t~edi~~li~~l~~~~~~ 303 (310)
.+.+.|.+.|+ ++. |++..+ ...||++++.. ..+++||+.+.+.|.+++..
T Consensus 385 ~a~~~L~e~GI-~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 385 QAESALLDAGI-VTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred HHHHHHHHCCe-EEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 45567777774 433 445455 78899996532 23699999999999888764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=197.73 Aligned_cols=261 Identities=15% Similarity=0.131 Sum_probs=180.2
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC-hHHHHHHHHHhCcEEEee
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT-LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p-l~~I~~l~~~~g~~l~vD 80 (310)
+|++.|+. |+.||++++ |.+|+++|+++|++. +..+.+|++++++| .|.++| |++|+++||++|.+++||
T Consensus 594 sa~~~G~~---Vv~V~~d~~--G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VD 664 (939)
T TIGR00461 594 SAAMAGMQ---VVPVNCDQD--GNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLD 664 (939)
T ss_pred HHHHCCCE---EEEeccCCC--CCcCHHHHHHHHhhc---CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEE
Confidence 46678887 999999865 499999999999862 12366888999988 688877 999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccce-----EEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC-----CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-----g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
||+..+....... +..++|++++++||+|++|.|+ |++.+++. +.+.++... +... .+..+ ..
T Consensus 665 gAq~~al~~l~~P-----g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~~--v~~t-~d~~g--re 732 (939)
T TIGR00461 665 GANMNAQVGLTSP-----GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKHD--VVSM-ITGIG--GS 732 (939)
T ss_pred ecChhhCCCCCCc-----cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCCc--cccc-ccCCC--Cc
Confidence 9996644433211 2236999999999999965555 99999854 333332111 1110 00000 00
Q ss_pred CCceeccCCCcch----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC----CCceEEEEEEcCCcc
Q 046506 156 KDWQITLSRRFRS----LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP----RHFAVVCFRVSPSAV 227 (310)
Q Consensus 156 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~----~~~~~v~~~~~~~~~ 227 (310)
.......++.+.. +..|+.++.+|.+|+.+..+....+|.|++++|.+ +++++.+ +..+-+++++.+..
T Consensus 733 q~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~- 809 (939)
T TIGR00461 733 KSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLK- 809 (939)
T ss_pred cccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchh-
Confidence 1112223334443 78899999999999999999999999999999987 5666543 23455667776421
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
...+..+.++.++|.+.|......+. ..+.-.||. +- -++++|+|+|++++.++..+..
T Consensus 810 ----------------~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiep--TE-~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 810 ----------------AKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEP--TE-SESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred ----------------hhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEe--ec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 11123457899999999865433221 123334554 43 5899999999999999887764
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=182.10 Aligned_cols=260 Identities=16% Similarity=0.144 Sum_probs=169.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc-CCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA-GLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~-~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..|+. ++++|.+.+..+.+|+++++++|++..+. ...+.+|+++++++++|.+.|+++|+++||+||+++|||+
T Consensus 119 ~~~~G~~---~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~ 195 (387)
T PRK09331 119 AERAGLN---VREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNG 195 (387)
T ss_pred HHHcCCE---EEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEEC
Confidence 4556776 99999832224589999999999864221 1236689999999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
||+.+.++.+... .++|++++++|||+++|.|+|+++++++ .+........+|..... . .+.
T Consensus 196 a~~~g~~~~~~~~------~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~~----------~-~~~ 257 (387)
T PRK09331 196 AYTVGRMPVDGKK------LGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKEV----------E-LLG 257 (387)
T ss_pred CcccCCcCCCHHH------cCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccce----------e-eec
Confidence 9998877665321 1589999999999999999999887654 44333222222221100 0 011
Q ss_pred cCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhhhhhccc
Q 046506 162 LSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
++.+ ..++.+++++..+. ...+++++..++++++++.|.+++|++++.+ ...+++.+...... .
T Consensus 258 ~~~~~~~~~~~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~--~--------- 324 (387)
T PRK09331 258 CTLRGAPLVTLMASFPHVV--ERVKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFD--E--------- 324 (387)
T ss_pred eecCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchh--H---------
Confidence 1111 23344455554331 1224567778899999999999999999852 23555555543110 0
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..........++.+.|.++|..... ......+|+.. ...+++|+++++++|+++.+++
T Consensus 325 ---~~~~~~~~~~~~~~~L~~~gI~~~~---~~~~~i~ri~~--~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 325 ---IAKKHKRRGFFLYEELKKRGIHGIK---PGATKEFKLST--YGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred ---HhhhccccchhHHHHHHHcCceEEc---cCCceEEEEEe--ccCCHHHHHHHHHHHHHHHHhc
Confidence 0000011124577888778764221 12345667663 3478999999999999987654
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=185.47 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=172.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.||.+++ +.+|+++++++|++.++ ..++++++++|.+|.+.|+++|+++|+++|++++||++
T Consensus 99 ~~~~g~~---~~~i~~~~~--~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~ 169 (368)
T PRK13479 99 AEYLGIA---HVVLDTGED--EPPDAAEVEAALAADPR----ITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAM 169 (368)
T ss_pred HHHcCCc---EEEEECCCC--CCCCHHHHHHHHHhCCC----CcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcc
Confidence 4556776 999999864 37999999999975432 34788899999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|+.+..+.+. .. .++|++++++|||+++|.|+|+++++++ .+........++..................+
T Consensus 170 ~~~g~~~~~~-----~~-~~~d~~v~s~~K~l~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 240 (368)
T PRK13479 170 SSFGAIPIDI-----AE-LGIDALISSANKCIEGVPGFGFVIARRS-ELEACKGNSRSLSLDLYDQWAYMEKTGQWRF-- 240 (368)
T ss_pred cccCCccccc-----cc-cCceEEEecCccccccCCCceEEEECHH-HHHHhhcCCCCeeecHHHHHhhhcccCCCCC--
Confidence 8776544331 11 1589999999999999999999998765 3333222111211110000000000000001
Q ss_pred CCC-cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--Cc-eEEEEEEcCCcchhhhhhhhcc
Q 046506 163 SRR-FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HF-AVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 163 ~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~-~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
+.. ...+++.++++.+..+ ++++..++..++++++++.|+++ |++++.++ .. .+++|.+....
T Consensus 241 t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----------- 308 (368)
T PRK13479 241 TPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP----------- 308 (368)
T ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCC-----------
Confidence 111 1234556677666444 47888899999999999999987 88776442 22 24566654321
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.....++.+.|.++|.. +.+........+|++.+ .+++++|+++++++|++++.++
T Consensus 309 ---------~~~~~~l~~~L~~~gi~-v~~g~~~~~~~iRis~~-~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 309 ---------AYDFKEFYERLKEQGFV-IYPGKLTQVDTFRIGCI-GDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred ---------CcCHHHHHHHHHHCCEE-EecCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 00013677778788754 33322222457999955 4689999999999999988765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=199.57 Aligned_cols=264 Identities=13% Similarity=0.018 Sum_probs=177.8
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++++.|+. |++||+|++| .+|+++|+++|+++++ ...+|++++++|..|.++||++|+++||++|+.++|||
T Consensus 632 ~a~~~G~~---vv~v~~d~~G--~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDg 703 (993)
T PLN02414 632 SAAMCGMK---IVVVGTDAKG--NINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDG 703 (993)
T ss_pred HHHHCCCE---EEEeccCCCC--CcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEe
Confidence 35567887 9999998654 8999999999986432 14689999999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccc-----eEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-----CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-----~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
||..+....... .. .++|++++++||||++|.| +|++++++. +.+.+ |.+...... +..+..
T Consensus 704 Aq~~a~~~l~~p----~~-~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~--L~p~l---Pg~~v~~~~---~~~~r~ 770 (993)
T PLN02414 704 ANMNAQVGLTSP----GF-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVPTG---GIPRPE 770 (993)
T ss_pred cCHHhccCcCCc----cc-cCCCEEEecCCccCCcCcccCCCCeeeEEEchh--hcccC---CCCccccCC---Cccccc
Confidence 997766333211 11 2699999999999997765 889988754 22322 222111100 111100
Q ss_pred CceeccCCCc-------chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcc
Q 046506 157 DWQITLSRRF-------RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAV 227 (310)
Q Consensus 157 ~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~ 227 (310)
...-.|+++. .+...|..+..+|.+|+.+..++...++.|++++|.+..++...++ +-++-+.+.+.+..
T Consensus 771 ~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~- 849 (993)
T PLN02414 771 KTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFK- 849 (993)
T ss_pred CCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccc-
Confidence 0111233321 1245567778889999999999999999999999987444444333 22223333333210
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ .. ..-..++.++|.+.|..... ..+...+.+|++++ -+++++|+|+|+++|..+..+..
T Consensus 850 -------~-----~~----g~~~~di~krL~d~Gihapt-~~~pv~~~lmiepT-E~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 850 -------N-----TA----GIEPEDVAKRLMDYGFHAPT-MSWPVPGTLMIEPT-ESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred -------c-----cc----CCCHHHHHHHHHHcCcEEee-eccccCCEEEEEee-eeCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00115688888877753222 22345778999977 57999999999999999887654
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=186.26 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=166.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++.+|++++ +.+|+++|++++++. +.+|++++++|++|.+.|+++|+++|+++|+++|||++|
T Consensus 109 ~~~g~~---v~~v~~~~~--~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~ 177 (381)
T PRK02948 109 ESQGYT---VTEIPVDKS--GLIRLVDLERAITPD------TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177 (381)
T ss_pred HhCCCE---EEEEeeCCC--CCCCHHHHHHhcCCC------CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChh
Confidence 345666 899998864 489999999999654 458999999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+..+.+. .. .++|++++++||++ +|.|+|++++++...+... ...... ...++.+
T Consensus 178 ~~g~~~~~~-----~~-~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~-------~~~~~~---------~~~~~~~ 234 (381)
T PRK02948 178 TFGKLPIDV-----FE-MGIDSLSVSAHKIY-GPKGVGAVYINPQVRWKPV-------FPGTTH---------EKGFRPG 234 (381)
T ss_pred hccccccCc-----cc-CCCCEEEecHHhcC-CCCcEEEEEEcCCCCCCCc-------ccCCCC---------CCCcCCC
Confidence 877655432 11 25999999999975 5889999998765211110 000000 0011111
Q ss_pred CC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CC---CceEEEEEEcCCcchhhhhhhhc
Q 046506 164 RR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PR---HFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 164 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~---~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.. ...+++.++++.. .++.++..++..++++++.+.|+++ ++++.. .+ ...+++|.+.+..
T Consensus 235 t~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~---------- 302 (381)
T PRK02948 235 TVNVPGIAAFLTAAENI-LKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGIE---------- 302 (381)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCCC----------
Confidence 11 1234445555543 2567888999999999999999987 554431 11 1346667665421
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------------------ECCEeEEEEEccCCCCCHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV--------------------LGGIYAIRFAAGATLTEERHVMVAWTV 296 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------------------~~~~~~iRis~~~~~~t~edi~~li~~ 296 (310)
..++...|.++|+ ++.... ....+++|+|++ ++||++|+++++++
T Consensus 303 -------------~~~~~~~l~~~gI-~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~-~~~t~~di~~l~~~ 367 (381)
T PRK02948 303 -------------GQYTMLECNRRGI-AISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFG-QQTTKDQIDTTIHA 367 (381)
T ss_pred -------------HHHHHHhcccCCE-EEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcC-CCCCHHHHHHHHHH
Confidence 1345556656664 433211 012478999966 68999999999999
Q ss_pred HHHHHHHHhhcc
Q 046506 297 VQEHLEALLSAS 308 (310)
Q Consensus 297 l~~~~~~~~~~~ 308 (310)
|+++.+.+..+.
T Consensus 368 l~~~~~~~~~~~ 379 (381)
T PRK02948 368 LETIGNQFYRGV 379 (381)
T ss_pred HHHHHHHHhccc
Confidence 999988776543
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=186.91 Aligned_cols=237 Identities=11% Similarity=0.109 Sum_probs=158.1
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
+..++++++ +.+|+++|++++.+.+ |.++++. .+.+|.+.|+++|+++||++|+++|||+||++|.++.+.
T Consensus 158 ~~~~~~~~~--g~id~~~L~~~l~~~~-----~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~ 228 (452)
T PTZ00094 158 SLPYQVNEK--GLIDYDKLEELAKAFR-----PKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGV 228 (452)
T ss_pred eeecccCCC--CCcCHHHHHHHHHHhC-----CCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCC
Confidence 334556653 5899999999997532 3345443 346899999999999999999999999999999887653
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKL 171 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (310)
.. ..+.++|++++++||||++|.| |++++++.. .......-....+. .++++.. ...+++
T Consensus 229 ~~---~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~-~~~l~~~~~~~~~p--------------~~~G~~~~~~iaal 289 (452)
T PTZ00094 229 LP---SPFPYADVVTTTTHKSLRGPRS-GLIFYRKKV-KPDIENKINEAVFP--------------GLQGGPHNHQIAAI 289 (452)
T ss_pred CC---CCCCCCcEEEcCCccCCCCCCc-eEEEEeccc-chHHHHhhccccCC--------------CCCCCchHHHHHHH
Confidence 22 1123699999999999999997 777776542 11110000000100 1122222 245667
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhccccchhHHHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINE 248 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (310)
.++++.+...+.+++.++..+++++|++.|.+. |+++..+. ...++.|...+.+
T Consensus 290 ~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~---------------------- 346 (452)
T PTZ00094 290 AVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGIT---------------------- 346 (452)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCCC----------------------
Confidence 777877766778889999999999999999885 88887532 2223333333211
Q ss_pred HHHHHHHHHHhcCcEEEEE-eEEC-----CEeEEEEEccCCCCC----HHHHHHHHHHHHHHHHH
Q 046506 249 FNRELLESINASGKAYMTH-AVLG-----GIYAIRFAAGATLTE----ERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 249 ~~~~l~~~l~~~g~~~~~~-~~~~-----~~~~iRis~~~~~~t----~edi~~li~~l~~~~~~ 303 (310)
.+.+...|.+.|+ +++. ..+. ..+++|+|++ .+|+ ++||++++++|++++..
T Consensus 347 -~~~~~~~L~~~gI-~vs~~~~p~~~~~~~~~~vRis~~-~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 347 -GSKMEKLLDAVNI-SVNKNTIPGDKSALNPSGVRLGTP-ALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred -HHHHHHHHHHCCc-EEecccCCCCCcCCCCCeEEECCH-HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1345566655554 4432 1111 2478999954 5676 99999999999998864
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=183.71 Aligned_cols=247 Identities=16% Similarity=0.136 Sum_probs=161.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+--|+. |+++|++. .+..|++.+++.|++.| ++|.+.+.+|+.|.++|++||+.+|+++|+.+|+|+||
T Consensus 152 ~~~g~~---Vt~lpv~~--~~~~d~~~~~~~i~~~T------~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 152 QEEGLE---VTYLPVED--SGLVDISKLREAIRSKT------RLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred HhcCeE---EEEeccCc--cccccHHHHHHhcCCCc------eEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 445666 99999994 45999999999999974 59999999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.|..+.+... + ++|++++++|||++.| |+|++|++... ..+...|++.++.... .+..|
T Consensus 221 avG~i~vDV~e-----l-n~D~~s~s~HK~ygp~-~iGaLYvr~~~---~~~~~~p~~~GGgq~r----------~~rsG 280 (428)
T KOG1549|consen 221 AVGKIPVDVQE-----L-NADFLSISAHKIYGPP-GIGALYVRRKR---PRLRVEPPLSGGGQER----------GLRSG 280 (428)
T ss_pred hcCCccccHHH-----c-CchheeeecccccCCC-cceEEEEccCC---CcccccCcccCCcccc----------ccccC
Confidence 99999887533 2 6999999999998755 59999999721 2223445665554321 12222
Q ss_pred CC--cchHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCC---ceEEEEEEc--CCcchhhhhh
Q 046506 164 RR--FRSLKLWFVLRNYGV--ANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRH---FAVVCFRVS--PSAVMDKLKT 233 (310)
Q Consensus 164 ~~--~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~---~~~v~~~~~--~~~~~~~~~~ 233 (310)
.+ ..+..+-.+.+.... ...+.+.. ++...+..++.. .+.+.+.+.+. .+.++|.+. ..-+
T Consensus 281 T~~~~~~~~~gsA~e~~~~~~~~~~~~~~---~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~------ 351 (428)
T KOG1549|consen 281 TVATPLAVGLGSAAEFVNKEMAYDEAIIK---RLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGES------ 351 (428)
T ss_pred CcCchhhhhhHHHHHHHHhhcchhHHHHH---HHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcc------
Confidence 22 233444555554422 22333333 366666666643 55665554321 234444444 2100
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEE----Ee---------EECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMT----HA---------VLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~----~~---------~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+..++.+.....|..+.+ |. .......+|||+.. +|+++|++++++++++.
T Consensus 352 ---------------~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~-y~t~~di~~~~~~i~~~ 415 (428)
T KOG1549|consen 352 ---------------LLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGR-YTTEEDIDYLVDAIKKL 415 (428)
T ss_pred ---------------hhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeee-eCcHHHHHHHHHHHHHH
Confidence 001111222222221111 11 00236789999774 79999999999999999
Q ss_pred HHHHhh
Q 046506 301 LEALLS 306 (310)
Q Consensus 301 ~~~~~~ 306 (310)
.+.+.+
T Consensus 416 v~~~~~ 421 (428)
T KOG1549|consen 416 VSLLRE 421 (428)
T ss_pred HHhccc
Confidence 887643
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-22 Score=177.45 Aligned_cols=258 Identities=13% Similarity=0.077 Sum_probs=189.6
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
.|+.+|.. ++.+.+.++. .+||++++++|+++.+ ...|.++|+.|.+|.+.|+++|+++|++||++++||+
T Consensus 98 ia~~~g~~---v~~~~~~wg~--~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDa 168 (383)
T COG0075 98 IAERYGAE---VVVLEVEWGE--AVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDA 168 (383)
T ss_pred HHHHhCCc---eEEEeCCCCC--CCCHHHHHHHHhcCCC----ccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEe
Confidence 35567776 9999999865 8999999999996533 4489999999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCc-cccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPE-YLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~ 160 (310)
.-+.|..+++... . ++|++..+.+|++++|.|.+++.++++.+ ......+.+ |...-. .+..+.+..
T Consensus 169 VsS~Gg~~~~vd~-----w-giDv~itgSQK~l~~PPGla~v~~S~~a~-e~~~~~~~~~~ylDL~----~~~~~~~~~- 236 (383)
T COG0075 169 VSSLGGEPLKVDE-----W-GIDVAITGSQKALGAPPGLAFVAVSERAL-EAIEERKHPSFYLDLK----KWLKYMEKK- 236 (383)
T ss_pred cccCCCcccchhh-----c-CccEEEecCchhccCCCccceeEECHHHH-HHHhcCCCCceeecHH----HHHHHHhhc-
Confidence 9888877665322 1 59999999999999999999999988754 333322222 222111 111111110
Q ss_pred ccCCCc-----chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhh
Q 046506 161 TLSRRF-----RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 161 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~ 233 (310)
+..++ ...++..+++.+..+|++++.+|+..+++.++++|+++ |++++..+ .+++++....|.++
T Consensus 237 -~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~------ 308 (383)
T COG0075 237 -GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGV------ 308 (383)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCC------
Confidence 12222 23677788888889999999999999999999999998 99988633 35555544444321
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++...+.+++.+.+++... -....+||..+. +.+.+|+..++++|...+.++
T Consensus 309 -------------~--~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG-~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 309 -------------D--DKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMG-NVRPEDVLAALAALEAALREL 364 (383)
T ss_pred -------------C--cHHHHHHHHHhCCEEecccccccCccEEEEecCc-cCCHHHHHHHHHHHHHHHHHc
Confidence 0 123334566665565554432 345799999997 799999999999999998876
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=186.95 Aligned_cols=240 Identities=16% Similarity=0.155 Sum_probs=161.0
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. +++++++++ +.+|+++|+++|+++ +.++++++.+|++|.+.|+++|+++||++|+++++|+||+.
T Consensus 117 ~g~~---~~~v~~~~~--g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~ 185 (404)
T PRK14012 117 EGFE---VTYLDPQSN--GIIDLEKLEAAMRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSV 185 (404)
T ss_pred CCCE---EEEEccCCC--CcCCHHHHHHhcCCC------CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhc
Confidence 3665 899998864 489999999999765 35899999999999999999999999999999999999998
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+..+.+.. . .++|++++++||+ ++|.|+|+++++++... +. .|.+... +. ...++.+..
T Consensus 186 g~~~~~~~-----~-~~~D~~~~s~~K~-~gp~g~G~l~~~~~~~~-~~---~~~~~g~-~~---------~~~~~~gt~ 244 (404)
T PRK14012 186 GKVPIDLS-----K-LKVDLMSFSAHKI-YGPKGIGALYVRRKPRV-RL---EAQMHGG-GH---------ERGMRSGTL 244 (404)
T ss_pred CCcccCcc-----c-CCCCEEEEehhhc-cCCCceEEEEEecCCCC-CC---CceecCC-Cc---------cCCccCCCc
Confidence 87765421 1 2599999999995 46889999999876422 11 1111111 10 001111211
Q ss_pred --cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--C-ce--EEEEEEcCCcchhhhhhhhccc
Q 046506 166 --FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--H-FA--VVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 166 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~-~~--~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
...+++.+++... ..+.+++.++..++++++.+.|++++++.+.+.. . .+ .++|...+.
T Consensus 245 ~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------------- 310 (404)
T PRK14012 245 PTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG------------- 310 (404)
T ss_pred CHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH-------------
Confidence 1223444555544 3466778899999999999999999998876431 1 22 344443221
Q ss_pred cchhHHHHHHHHHHHHHHHHh----cCcEEEEEeE---------E-----CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINA----SGKAYMTHAV---------L-----GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~---------~-----~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.++...+.. .|..+ .+.. . ...+.||+|++ +++|++|||+++++|+++
T Consensus 311 ------------~~~~~~l~~~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~~dvd~~~~~l~~~ 376 (404)
T PRK14012 311 ------------ESLIMALKDLAVSSGSAC-TSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYAIELVRKS 376 (404)
T ss_pred ------------HHHHHhCCCeEEEchhhh-CCCCCCCCHHHHHcCCChhhcCceEEEEec-CCCCHHHHHHHHHHHHHH
Confidence 123332321 11111 1110 0 12468999966 679999999999999998
Q ss_pred HHHHh
Q 046506 301 LEALL 305 (310)
Q Consensus 301 ~~~~~ 305 (310)
++.++
T Consensus 377 ~~~~~ 381 (404)
T PRK14012 377 IGKLR 381 (404)
T ss_pred HHHHH
Confidence 87663
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=197.88 Aligned_cols=269 Identities=11% Similarity=0.020 Sum_probs=172.1
Q ss_pred cCCCCCCEEEEecCCC------CCcccCH--HHHHHHHHHHH----HcCCCcEEEEEeccCCcccccCChHHHHHHHHHh
Q 046506 6 VGIDVKNFRAIKTTKS------SSYGLSP--DSLMAKINSDV----EAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF 73 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~------~~~~id~--~~Le~~i~~~~----~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~ 73 (310)
.|+. +++++++.. +.+.+++ ++|++.+++.. .....+.+|++++.+|.+|.+.|+++|..+++..
T Consensus 145 ~G~~---v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~ 221 (805)
T PLN02724 145 KGAA---AIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQ 221 (805)
T ss_pred cCCe---EEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhc
Confidence 4665 888887621 1234544 66777653110 0011245999999999999999999876555532
Q ss_pred --------CcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccc
Q 046506 74 --------GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNK 145 (310)
Q Consensus 74 --------g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~ 145 (310)
+++++||+||+++..+.+... + ++|++++|+|||+++|.|+|++|++++. +.. ..|.+.++.
T Consensus 222 ~~~~~~~g~~~v~vDaaQ~~g~~piDv~~-----~-~~Dfl~~S~HK~~GgP~G~G~L~vr~~~-~~~---l~p~~~GGg 291 (805)
T PLN02724 222 HSNFSKSGRWMVLLDAAKGCGTSPPDLSR-----Y-PADFVVVSFYKIFGYPTGLGALLVRRDA-AKL---LKKKYFGGG 291 (805)
T ss_pred ccccccCcceEEEeehhhhcCCCCCChhh-----c-CCCEEEEecceeccCCCCceEEEEehhh-hhh---hcCCccCCC
Confidence 367999999999999887432 2 5999999999999999999999999763 222 123444332
Q ss_pred cccc---c-c---ccCCCCceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC------CeEEe
Q 046506 146 ATES---K-Q---VVDYKDWQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK------RFEVV 210 (310)
Q Consensus 146 ~~~~---~-~---~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~------~~~v~ 210 (310)
.... . . .+......++.|++ ...+++.++++.+...+++++.++..++++++.+.|++++ +++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iy 371 (805)
T PLN02724 292 TVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLY 371 (805)
T ss_pred ceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEc
Confidence 2100 0 0 01112334555554 3456777888888666899999999999999999999886 58888
Q ss_pred cCC--------CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe--------------
Q 046506 211 FPR--------HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHA-------------- 268 (310)
Q Consensus 211 ~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------------- 268 (310)
++. +.++++|.+.+.+-. .....++..+.. ......+.|. +|.+.
T Consensus 372 g~~~~~~~~~~r~~ivsFnv~~~~~~-----------~v~~~~v~~l~~-~~gI~vR~G~-~Ca~~~~~~~lg~~~~~l~ 438 (805)
T PLN02724 372 GNHTFKLEFHIQGPIVTFNLKRADGS-----------WVGHREVEKLAS-LSGIQLRTGC-FCNPGACAKYLGLSHKDLQ 438 (805)
T ss_pred CCCCCCCCcccccCEEEEEEEcCCCC-----------EeCHHHHHHHHH-hcCcEEeecc-ccCchHHHHHcCCCHHHHH
Confidence 642 468999999874310 000111111110 0111122221 22111
Q ss_pred --------------EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 269 --------------VLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 269 --------------~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
... ..+++|+|+. ++||++|||+|+++|++..
T Consensus 439 ~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 439 ANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred HHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHHHHHHHHHHh
Confidence 011 1389999976 7899999999999999855
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=179.87 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=168.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.++.+++ +.+|+++++++++++++ ..+++.++.+|.+|.+.|+++|+++|++||++++||++
T Consensus 93 a~~~g~~---~~~i~~~~~--~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~ 163 (355)
T TIGR03301 93 CEYLGIP---HTDLNFSEY--EPPDLNRIEEALAADPD----ITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAM 163 (355)
T ss_pred HHHcCCc---eEEEecCCC--CCCCHHHHHHHHHhCCC----ceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEec
Confidence 4557777 899998754 47999999999976432 45778888999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC--cee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD--WQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~ 160 (310)
++.+..+.+. ... ++|+++.++|||+++|.|+|+++++++ .+........++...... .+.+.. ...
T Consensus 164 ~s~g~~~~~~-----~~~-~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 232 (355)
T TIGR03301 164 SSFGAIPIDI-----EEL-DVDALIASANKCLEGVPGFGFVIARRD-LLEASAGNARSLYLDLYD----QWAYMEKTGKW 232 (355)
T ss_pred cccCCcccch-----hhc-CccEEEecCCcccccCCceeEEEECHH-HHHHhhCCCCCceeeHHH----HHHHhhhcCCC
Confidence 8766554321 111 589999999999998989999988765 333322111111111100 000000 000
Q ss_pred ccCCC-cchHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC--ce-EEEEEEcCCcchhhhhhhh
Q 046506 161 TLSRR-FRSLKLWFVLRNYGVAN-LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH--FA-VVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~--~~-~v~~~~~~~~~~~~~~~~~ 235 (310)
..+.. ....++..+++.+..++ +++..++..++++++.+.|.++ +++++.++. .+ ++++.+++..
T Consensus 233 ~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 302 (355)
T TIGR03301 233 RFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP--------- 302 (355)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC---------
Confidence 00111 12244455666665555 8888899999999999999886 787664432 23 3456554310
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.....++.++|.++|. .+.+........+|++++ .+++++|+++++++|+++
T Consensus 303 -----------~~~~~~~~~~l~~~gi-~i~~~~~~~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 303 -----------DFDFDDFYQELKERGF-VIYPGKLTLADTFRIGTI-GEIDAADIERLLEAIKDA 354 (355)
T ss_pred -----------cchHHHHHHHHHHCCE-EEECCccccccEEEEecC-CCCCHHHHHHHHHHHHhh
Confidence 0112467777877875 444332222368999965 568999999999999864
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=171.30 Aligned_cols=255 Identities=14% Similarity=0.123 Sum_probs=166.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc-CCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA-GLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~-~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..|+. ++.+|.++++.+.+|+++|++++++..+. +..+.+|++++++|++|.+.|+++|+++|+++|++++||+
T Consensus 100 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~ 176 (361)
T cd06452 100 AERAGLN---VREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNG 176 (361)
T ss_pred HHhcCCE---EEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEEC
Confidence 4566776 99999987545689999999999764321 1125688889999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
||+.+..+.+... . ++|+++.++||++++|.++|+++++++ .+.+......+| .. ......
T Consensus 177 a~~~g~~~~~~~~-----~-~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~~~l~~~~~~~-~~-----------~~~~~~ 237 (361)
T cd06452 177 AYTVGRMPVSGKE-----L-GADFIVGSGHKSMAASAPIGVLATTEE-WADIVFRTSQMF-KI-----------KEVELL 237 (361)
T ss_pred CcccCCcCCCHHH-----c-CCCEEEecCCccccCCCCeEEEEECHH-HHHHHhcccccc-cc-----------ceeeee
Confidence 9987665443211 1 489999999999998888998887644 443332222111 00 001111
Q ss_pred cCC-C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 162 LSR-R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 162 ~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
++. + ..++.+++++... .+. .+..++..++++++++.|+++||++++. +...+++.+...... .
T Consensus 238 ~~~~~~~~~~~~~~al~~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~--~-------- 305 (361)
T cd06452 238 GCTLRGAPLVTLMASFPHV-KER-VKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFD--E-------- 305 (361)
T ss_pred ccccCchHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcc--h--------
Confidence 221 1 2334445555433 222 3445555677899999999999999874 335666766654210 0
Q ss_pred ccchhHHHH-HHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERI-NEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 238 ~~~~~~~~~-~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.... .....++.+.|.++|.. .. .......+|++.. ..++||++.++++|+++.
T Consensus 306 -----~~~~~~~~~~~~~~~L~~~gI~-~~--~~~~~~~~ri~~~--g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 306 -----IAKKHKRRGYFLYSELKKRGIH-GI--KPGLTRYFKLSTY--GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -----hhhhccccchhHHHHHHHcCce-EE--cCCCceEEEEEec--CCCHHHHHHHHHHHHHHh
Confidence 0000 00012577888778754 21 1233457899853 368999999999998754
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=180.03 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=156.1
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh-HHHHHHHHHhCcEEEeecccccccccCh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL-KPLCDVAKQFGIWVHVDAAYAGSACICP 91 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl-~~I~~l~~~~g~~l~vD~a~~~~~~~~~ 91 (310)
++.+|.+++ +.+|+++|++++.++ +.+|++++++ .+|.+.|+ ++|+++|++||+++++|++|+.+..+.+
T Consensus 136 ~~~v~~~~~--~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~ 206 (398)
T cd00613 136 VVEVPSDEG--GTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKP 206 (398)
T ss_pred EEEeccCCC--CCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCC
Confidence 888998753 479999999999654 3467777765 68999885 9999999999999999999976554443
Q ss_pred hhhhhhcCCCCCCeeeeeccccccccc-----ceEEEEEeCchhHHhhhccCCcccccccccc-c--cccCCC----Cce
Q 046506 92 EFRHFIDGVEGADSFSLNAHKWFFTTL-----DCCCLWVKDPSDLVNSLSTNPEYLKNKATES-K--QVVDYK----DWQ 159 (310)
Q Consensus 92 ~~~~~~~~~~~~D~~~~~~hK~l~~p~-----g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~-~--~~~~~~----~~~ 159 (310)
... .++|++++++|||+ +|. ++|++++++. .+ +.+.. .......... . ...+.. ...
T Consensus 207 ~~~------~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r 275 (398)
T cd00613 207 PGE------YGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LV-RFLPG--RLVGVTKDAEGNRAFRLALQTREQHIR 275 (398)
T ss_pred hHH------cCCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hH-hhCCC--CeeccccccCCCcceEEecccchhhcc
Confidence 211 25999999999999 663 4667877654 33 22211 1110000000 0 000000 000
Q ss_pred eccCCC-------cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 160 ITLSRR-------FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 160 ~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
++.++. ..+..++.++..++.++++++.++..+++++++++|+++++..+...+..++++|.+....
T Consensus 276 ~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~------ 349 (398)
T cd00613 276 REKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLY------ 349 (398)
T ss_pred cccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcc------
Confidence 111111 1224455666777888999999999999999999999886554222234455666654310
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
.....++.+.|.++|.+ +....+.+.+.+|+|++ .++|+||||+++++|
T Consensus 350 --------------~~~~~~~~~~L~~~gi~-~~~~~~~~~~~lRis~~-~~~t~edid~~~~~L 398 (398)
T cd00613 350 --------------GIRAEDLAKALIDGGFH-APTMYLPVDGTLMIEPT-ETETKEELDALLEAL 398 (398)
T ss_pred --------------hHHHHHHHHhhhhcCcc-ccccccCCCCeEEEEcC-CCCCHHHHHHHHHhC
Confidence 01124677777777754 33222345679999955 789999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=170.45 Aligned_cols=257 Identities=13% Similarity=0.105 Sum_probs=164.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcC-CCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAG-LIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~-~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..|.. ++.+|.+++.++.+|+++|+++|++.+... ..+.+|+++++++++|.+.|+++|+++|++||++++||+
T Consensus 107 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDe 183 (370)
T TIGR02539 107 AERAGLN---VKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNC 183 (370)
T ss_pred HHHcCCE---EEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEEC
Confidence 4556666 889998754457899999999997643211 135688888999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
||+.+.++.+... .++|+++.++|||++++.++|+++.+++ .++.......+|.... ....
T Consensus 184 a~~~g~~~~~~~~------~~~di~v~s~sK~~~~~g~~G~l~~~~~-~i~~l~~~~~~~~~~~------------~~~~ 244 (370)
T TIGR02539 184 AYTVGRMPVSAKE------IGADFIVGSGHKSMAASGPCGVLGMSEE-WEDIVLRKSRYSPVKE------------VELL 244 (370)
T ss_pred ccccCCcCCCHHH------cCCCEEEeeCcccccCCCCEEEEEECHH-HHhhhcccccCCccce------------eeee
Confidence 9987754332211 1489999999999987777888877543 4433322222222111 0111
Q ss_pred cCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 162 LSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 162 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
++.. ..+..+++++... .+.+ +..++..++++++++.|+++ |++++. ++.++++.+.++....
T Consensus 245 ~~~~~~~~~~~~~~al~~~-~~~l-~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~---------- 311 (370)
T TIGR02539 245 GCTSRGAPIVTMMASFPHV-VERV-KRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHE---------- 311 (370)
T ss_pred cccccccHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhH----------
Confidence 1111 1223333333321 1222 33445566678999999987 788753 5567888776542100
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
....+ ......+.+.|.++|.+.+.+ .....+|+|++ ..+++|+++++++|+++.++
T Consensus 312 ---~~~~~-~~~~~~~~~~L~e~GI~~ir~---~~~~~iRis~~--~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 312 ---IAQKH-KRRGYFLYEELKKRGIHGIRS---GQTKYFKLSVY--GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ---Hhhhh-ccccHHHHHHHHhCCCccccC---CcceEEEEEec--CCCHHHHHHHHHHHHHHHHh
Confidence 00000 111245778888888641222 23468999964 35899999999999987654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=166.50 Aligned_cols=234 Identities=19% Similarity=0.181 Sum_probs=150.2
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHHHcC-CCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 14 RAIKTTKSSSYGLSPDSLMAKINSDVEAG-LIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 14 ~~v~~~~~~~~~id~~~Le~~i~~~~~~~-~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
..++..++.+++++++++++.|......+ .+| .++.....|..|++.| |++|+++||+||++||+|||.-+.++.
T Consensus 100 ~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~-~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~v 178 (342)
T COG2008 100 QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTP-LAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALV 178 (342)
T ss_pred ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCc-eEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHH
Confidence 34555554456999999999998732222 344 4555455558899877 556888999999999999998666544
Q ss_pred ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC--Ccc
Q 046506 90 CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR--RFR 167 (310)
Q Consensus 90 ~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~ 167 (310)
... .....-..++|++++++.|.++.|.|. +++.+++..+++ .|...... ++.| |+.
T Consensus 179 alg-~~~~~~~~~~D~v~~~~tK~g~~~~gA--iv~gn~~~~~~a-----~~~rK~~G-------------gl~~k~r~l 237 (342)
T COG2008 179 ALG-VALKTIKSYVDSVSFCLTKGGGAPVGA--IVFGNRDFAKRA-----RRWRKRAG-------------GLMRKARFL 237 (342)
T ss_pred HcC-CCHHHHHhhCCEEEEecccCCcceeee--EEEcCHHHHHHH-----HHHHHHhc-------------ccHhhhhHH
Confidence 321 111111246999999999999998644 555666554433 12111110 0111 122
Q ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 168 SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
+++... ++...-+....+|..++|++|.+.+.+.||+++..++++|+|.++++...
T Consensus 238 aA~~~~---~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~--------------------- 293 (342)
T COG2008 238 AAQGLY---ALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESA--------------------- 293 (342)
T ss_pred HHHHHH---HHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHH---------------------
Confidence 222222 23334466667777778999999999889999998899999988776521
Q ss_pred HHHHHHHHHHHhcCcEEEEEeEECCE--eEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHAVLGGI--YAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~~~~~~--~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+ +.+...+.++.. .++.+. ..+||+ +|+.|++|||+.++..++.+.
T Consensus 294 -----i-~~l~~~~~~~~~-~~~~~~~~~~vRfv-ts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 -----I-EALRLAGALFYR-GVLIGAHGEIVRFV-TSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred -----H-HHHHhhchhhee-eeeccCCCceEEEE-eeccCCHHHHHHHHHHHHHhh
Confidence 1 333333332221 222222 479999 779999999999999998764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=184.21 Aligned_cols=258 Identities=14% Similarity=0.077 Sum_probs=169.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. +++||+|++| .+|+++|+++|++... ....|+++++++..+..+|+++|+++||++|++++||||
T Consensus 608 a~~~Gie---Vv~Vp~D~~G--~iDle~L~a~I~~~~~---~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA 679 (954)
T PRK12566 608 AQMAGMR---VVIVECDPDG--NVDLDDLKAKAAAAGD---RLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGA 679 (954)
T ss_pred HHHCCCE---EEEeccCCCC--CcCHHHHHHHhhccCC---CEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEee
Confidence 4456787 9999998754 8999999999974221 245677788887777678899999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCc---hhHHhhhccCCccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDP---SDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~---~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
+..+........ . .++|++++++||||++|.|.|+.++..- ..+.+.+...|. .... +. ..+
T Consensus 680 ~~~a~~~l~~Pg----~-~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~-~d~~-----G~-~~r--- 744 (954)
T PRK12566 680 NLNAQVGLARPA----D-IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPV-VPVE-----GP-DPN--- 744 (954)
T ss_pred ChhhccCCCChh----h-cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCC-cCCC-----CC-CCC---
Confidence 976555443211 1 2699999999999999999999988762 222222222211 0000 00 000
Q ss_pred eccCCC---c-c---hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--C-ceEEEEEEcCCcchh
Q 046506 160 ITLSRR---F-R---SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--H-FAVVCFRVSPSAVMD 229 (310)
Q Consensus 160 ~~~~~~---~-~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~-~~~v~~~~~~~~~~~ 229 (310)
++++. + . +...|..++.+|.+ +.+.......++.|++++|.+..++.. .++ . ++-+.+...+..
T Consensus 745 -~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~-~~~~~~~~hEfii~~~~l~--- 818 (954)
T PRK12566 745 -NGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLY-RGRNERVAHECILDLRPLK--- 818 (954)
T ss_pred -CCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCc-CCCCCCeeeEEEEEccccc---
Confidence 12221 1 1 34556667778888 777788889999999999987433332 221 1 222333332210
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+. . ..-..++.++|.+.|.. .....+...+.+|++++ -+++++|+|+|+++|+++..+..
T Consensus 819 -----~~----~-----g~~~~dvakRL~d~Gih-apt~~fPv~~~LmIepT-E~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 819 -----AQ----T-----GISEEDVAKRLMDYGFH-APTMSFPVPGTLMVEPT-ESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred -----cc----c-----CCCHHHHHHHHHHCCcE-EeEEeeccCCEEEEEee-eeCCHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00114688888877643 32234455778999966 57999999999999999987753
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-20 Score=167.33 Aligned_cols=229 Identities=15% Similarity=0.081 Sum_probs=166.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhc--CC--
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--GV-- 100 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~--~~-- 100 (310)
+.|+++||++|.+....+.++.+|+.....+|.|.+.||++|+++|++||++|+||.||+.|.+. +..++... ++
T Consensus 152 HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G-~~GrG~~e~~g~~~ 230 (388)
T COG0156 152 HNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLG-PNGRGLAEHFGLEP 230 (388)
T ss_pred CCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccC-CCCccHHHHhCCCC
Confidence 57889999999885422114578999999999999999999999999999999999999888754 22333322 22
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..+|++..+..|.|+ +.|.++..+....+.......+|++..+.. ++.+.++.++++.+
T Consensus 231 ~~vdi~~gTlsKAlG---s~Gg~v~g~~~~~d~L~~~ar~~ifStalp----------------P~~aaa~~~al~~l-- 289 (388)
T COG0156 231 EEVDIIVGTLGKALG---SSGGYIAGSAALIDYLRNRARPFIFSTALP----------------PAVAAAALAALRIL-- 289 (388)
T ss_pred ccceEEEEEchhhhc---ccCceeeCcHHHHHHHHHhCCceeccCCCC----------------HHHHHHHHHHHHHH--
Confidence 235899999999998 456666677755433344456777765421 12334455555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+...+++++.++++.+++..+... ++.+. +..++|+.+.+.+ +....++...|.++
T Consensus 290 ~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~-~s~s~I~pv~~gd----------------------~~~a~~~s~~l~~~ 345 (388)
T COG0156 290 EEGPERRERLQELAAFFRSLLKAL-GLVLL-PSESPIIPVILGD----------------------EERALEASRALLEE 345 (388)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCeeeeEeCC----------------------HHHHHHHHHHHHHC
Confidence 345678888889999999777654 66653 5678888887776 33445677777778
Q ss_pred CcE---EEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 261 GKA---YMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 261 g~~---~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
|.+ ...|+++.+...+|++++ ...|++||+++++++.++
T Consensus 346 Gi~v~~i~~PTVp~gtarlRi~lt-a~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 346 GIYVSAIRPPTVPKGTARLRITLT-AAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CeeEeeecCCCCCCCcceEEEEec-CCCCHHHHHHHHHHHHhh
Confidence 643 233667789999999977 578999999999999875
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=174.42 Aligned_cols=234 Identities=12% Similarity=0.017 Sum_probs=159.8
Q ss_pred EEEEecCCCCCcccCHHHHHH-HHHHHHHcCCCcEEEEEeccCCcccccC-ChHHHHHHHHHhCcEEEeecccccccccC
Q 046506 13 FRAIKTTKSSSYGLSPDSLMA-KINSDVEAGLIPLFLCATIGTTAITAVD-TLKPLCDVAKQFGIWVHVDAAYAGSACIC 90 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~-~i~~~~~~~~~~~~v~~~~~~~~~G~~~-pl~~I~~l~~~~g~~l~vD~a~~~~~~~~ 90 (310)
...++.++. .+..+..++++ +|+++ +.+|.++|+.|.+|.+. ||++| +|++++||+++++++.+.
T Consensus 116 ~~~~~~~~~-~g~~~~~~~~~~~l~~~------~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~i 182 (360)
T PRK05355 116 VNVAASSED-DGFTYIPPLDEWQLSDD------AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPI 182 (360)
T ss_pred ceEEecccc-cCCCCCCChhhccCCCC------CCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccC
Confidence 355555531 12455555555 66543 45899999999999997 78777 899999999999999888
Q ss_pred hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cch
Q 046506 91 PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FRS 168 (310)
Q Consensus 91 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 168 (310)
+.. ..|++++++||+++ |.|.|+++++++.+ .+.-+..+.|+.... +.......+++ ...
T Consensus 183 dv~--------~~d~~~~ssqK~lg-P~Glg~l~~s~~~l-~~~~~~~~~~~~~~~--------~~~~~~~~~Tp~~~~i 244 (360)
T PRK05355 183 DVS--------KFGLIYAGAQKNIG-PAGLTIVIVREDLL-GRALPSIPSMLDYKT--------HADNDSMYNTPPTFAI 244 (360)
T ss_pred CHH--------HccEEEEecccccc-CCceEEEEECHHHH-hhcccCCChHHHHHH--------HHhcCCccCCCcHHHH
Confidence 643 25799999999986 99999999987743 332111111211110 00000011223 245
Q ss_pred HHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCc-eEEEEEEcCCcchhhhhhhhccccchhHH
Q 046506 169 LKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHF-AVVCFRVSPSAVMDKLKTKYENSLLSEEE 244 (310)
Q Consensus 169 ~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
+++.++++.+..+ |++++.+|+.++++++++.|++++.+..+.+ .+. .+++|.+++.
T Consensus 245 ~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------------------- 305 (360)
T PRK05355 245 YLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------------------- 305 (360)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh-------------------
Confidence 6778888888778 8999999999999999999999864333322 134 4678876652
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 245 RINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 245 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
....++.+.+.+.|.++ .... ...+.+|+|+. ++||.|||++|+++|++++.
T Consensus 306 ---~~~~~~~~~~~~~Gi~~-~~~~-~~~g~vRiS~~-~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 306 ---ELDKKFLAEAKAAGLVG-LKGH-RSVGGMRASIY-NAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred ---HHHHHHHHHHHHCCCcc-cCCC-CccCcEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 11135556777788664 3322 23478999976 57999999999999999765
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=170.37 Aligned_cols=222 Identities=10% Similarity=-0.007 Sum_probs=154.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
.+++++++. ++ .+.+|+++|+.|.+|...| ++++.++++++||+++++++.+.+.. ..|
T Consensus 119 ~~~~~~~~~--~~------~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~--------~~d 177 (349)
T TIGR01364 119 IPDPSTWEI--SE------DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVS--------KFG 177 (349)
T ss_pred CCCHHhcCC--CC------CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHH--------Hcc
Confidence 466666552 22 2558999999999999876 77778899999999999999888643 257
Q ss_pred eeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cchHHHHHHHHHhCHH-
Q 046506 105 SFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FRSLKLWFVLRNYGVA- 181 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~- 181 (310)
++++++||+++ |.|.|+++++++.+ .+.-+..+.|..... ...... ..+++ ...+++.++++.+..+
T Consensus 178 ~~~~ssqK~lg-P~Glg~l~~s~~~~-~~~~~~~~~~~~~~~-------~~~~~~-~~~Tp~~~~i~al~~al~~l~~~g 247 (349)
T TIGR01364 178 LIYAGAQKNIG-PAGLTVVIVRKDLL-GRASRITPSMLNYKI-------HAENDS-MYNTPPTFAIYVSGLVFKWLKEQG 247 (349)
T ss_pred EEEEecccccC-CCceEEEEECHHHH-hhcccCCCCcchHHH-------HHhcCC-CCCCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999986 99999999987743 332222222211000 000000 11223 2446777888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-C--Cc-eEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-R--HF-AVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~--~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
|++++.+++.++++++++.|++++|+..... + +. .+++|.+.+. .+..++.+.+
T Consensus 248 G~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~----------------------~~~~~~~~~~ 305 (349)
T TIGR01364 248 GVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE----------------------ELEKRFLKEA 305 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh----------------------hHhHHHHHHH
Confidence 7999999999999999999999988755532 1 33 4577876642 1124555677
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.++|. +..+... ..+.+|+|+. .++|+||||.|+++|+++.+
T Consensus 306 ~~~Gi-~~~~~~~-~~g~vRvS~~-~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 306 EERGL-VSLKGHR-SVGGMRASIY-NAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred HHCCC-cccCCcc-ccCeeEEECc-CCCCHHHHHHHHHHHHHHHH
Confidence 77886 4433321 2358999976 57999999999999998764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-21 Score=173.20 Aligned_cols=241 Identities=15% Similarity=0.082 Sum_probs=158.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccC-HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLS-PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id-~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..|+. ++++++++++. ..+ ++..+..++++ +.+|+++|++|.+|.+. . ++++.||++++||+
T Consensus 106 a~~~g~~---~~~~~~~~~g~-~~~~~~~~~~~~~~~------~~lV~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa 170 (355)
T cd00611 106 AKRYGGV---VVIVAAKEEGK-YTKIPDVETWDLAPD------AAYVHYCSNETIHGVEF--D---EVPDTGGVPLVADM 170 (355)
T ss_pred HHhcCCC---cEEEecccccC-CCCCCCHhhcCCCCC------CCEEEEeCCcccccEEc--c---eecccCCCeEEEEc
Confidence 3455776 99999875431 224 33333444433 45899999999999972 2 45566999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+|++++.+.+... .|+...++||+++ |.|+|+++++++. +.+.-+..+.+.... ...+... .
T Consensus 171 ~qs~g~~~idv~~--------~~~~~ss~~K~lG-P~G~g~l~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~---~ 232 (355)
T cd00611 171 SSNILSRPIDVSK--------FGVIYAGAQKNLG-PAGVTVVIVRKDL-LGKARKITPSMLNYK-----THADNNS---L 232 (355)
T ss_pred cccccCCCCCHHH--------hCEEEeecccccC-CCceEEEEECHHH-HhhcccCCCCcccHH-----HHHhcCC---C
Confidence 9999999887532 3445566999875 9999999998764 333212222211100 0000000 0
Q ss_pred cCCC--cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeE-EecC--CCc-eEEEEEEcCCcchhhhhhh
Q 046506 162 LSRR--FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFE-VVFP--RHF-AVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 162 ~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~--~~~-~~v~~~~~~~~~~~~~~~~ 234 (310)
.+++ ...+++.++++.+..+ |++++.+++.++++++++.|+++||+. ...+ .+. .+++|.+.+.
T Consensus 233 ~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~--------- 303 (355)
T cd00611 233 YNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE--------- 303 (355)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh---------
Confidence 2233 2457888899988777 799999999999999999999998863 2111 134 4588887652
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.+..++.+.+.+.|.+ .... ....+.+|+|+. ++||+|||++|+++|+++.
T Consensus 304 -------------~l~~~~~~~~~r~G~~-~~~~-~~~~g~vR~S~~-~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 304 -------------ELEKEFLKEAEAAGMI-GLKG-HRSVGGIRASIY-NALSLEGVQALADFMKEFQ 354 (355)
T ss_pred -------------hhhHHHHHHHHHCCCc-ccCC-CcccCeEEEEcc-CCCCHHHHHHHHHHHHHHh
Confidence 1223444566677864 3322 222468999976 6899999999999999853
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=168.42 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=137.9
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.+|.+++ +.+|+++|+++++++ +.+|++++++|++|.+.|+++|+++|+++|++++||++|+
T Consensus 110 ~~G~~---v~~v~~~~~--~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~ 178 (353)
T TIGR03235 110 RNGFT---VTYLPVDES--GRIDVDELADAIRPD------TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV 178 (353)
T ss_pred hcCCE---EEEEccCCC--CcCCHHHHHHhCCCC------CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhh
Confidence 34666 899998864 489999999999653 4589999999999999999999999999999999999999
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.+..+.+... .++|++++++|||+ +|.|+|+++++++... . ....|.+..... ...++.+.
T Consensus 179 ~g~~~~~~~~------~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~-~-~~~~~~~~~~~~----------~~~~~~gt 239 (353)
T TIGR03235 179 VGKITVDLSA------DRIDLISCSGHKIY-GPKGIGALVIRKRGKP-K-APLKPIMFGGGQ----------ERGLRPGT 239 (353)
T ss_pred cCCccccccc------cCCCEEEeehhhcC-CCCceEEEEEccCccc-c-cccCceeeCCCC----------cCccccCC
Confidence 8887765321 25999999999984 6999999999976321 1 111221111110 00122222
Q ss_pred C--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcC
Q 046506 165 R--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSP 224 (310)
Q Consensus 165 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~ 224 (310)
+ ...+++.++++.+ .++.+++.+++.++++++++.|.+ +|++++.++. ..+++|.+.+
T Consensus 240 ~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~ 302 (353)
T TIGR03235 240 LPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDG 302 (353)
T ss_pred CChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCC
Confidence 2 2345666677655 367889999999999999999988 7999886432 4577787654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=165.74 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=132.2
Q ss_pred CcceecCCCCCCEEEEec--CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEE
Q 046506 1 KAAQIVGIDVKNFRAIKT--TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVH 78 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~--~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~ 78 (310)
||+.++|+. .++|++ +++ .+.+|+++|+++|++.+. . .+.+++.+.++...|..+|+++|+++|++||+|+|
T Consensus 166 kAi~~~G~~---pv~Vd~~~d~~-~~~iD~e~Le~aIt~~~~-k-ai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lI 239 (444)
T TIGR03531 166 KAISTAGFE---PRVIETVLDGD-ELTTDVEDIERAIEEIGP-D-NILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHI 239 (444)
T ss_pred HHHHHcCCe---EEEeeeeecCc-CCCcCHHHHHHHHHhccC-C-CEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEE
Confidence 577889998 999995 443 689999999999986431 1 12233333333445689999999999999999999
Q ss_pred eecccccccccChhhhhhh-cC--CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 79 VDAAYAGSACICPEFRHFI-DG--VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~-~~--~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
||+||+.+.... .... .+ .+.+|++++++||++.+|.++|++++++++.++.... .|....
T Consensus 240 vDaAyg~~~~~~---~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~---~y~g~~---------- 303 (444)
T TIGR03531 240 VNNAYGLQSNKY---MELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISK---SYPGRA---------- 303 (444)
T ss_pred EECcCcCcChhh---hhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHH---hccCCC----------
Confidence 999998643221 1111 11 2248999999999999999989888888876533221 111100
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCC
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRH 214 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~ 214 (310)
.......+|+++..+|.+++++++++..++++++.+.|.++ .|.+++..|.
T Consensus 304 --------~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~ 357 (444)
T TIGR03531 304 --------SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPE 357 (444)
T ss_pred --------CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCC
Confidence 01245778899999999999999999999999999999875 3567774443
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-20 Score=168.18 Aligned_cols=235 Identities=11% Similarity=-0.021 Sum_probs=156.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
+..+++++++ .++++ +.++ +.+|+++|++|.+|.+.|+++| +|++|++++||++++.++.+.+.
T Consensus 110 ~~~~~~~~~~--~~~~~-----~~~~------~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv 173 (361)
T TIGR01366 110 PIIVTADPGS--APEPQ-----ADPG------VDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDI 173 (361)
T ss_pred ceEEecCCCC--CCCCc-----cCCC------CCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCH
Confidence 7777777533 44432 2222 4589999999999999999998 58999999999999999988764
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC------CccccccccccccccCCCCceeccCCCc
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN------PEYLKNKATESKQVVDYKDWQITLSRRF 166 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~------~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (310)
. .+|++++++|||+++|.|.++++++++. +++..... |.|+... .......+++.+.
T Consensus 174 ~--------~~D~~~~s~~K~lg~~~Gl~~~~~s~~~-~~~~~~~~~~~~~~p~~~d~~--------~~~~~~~~~~t~~ 236 (361)
T TIGR01366 174 A--------ETDVYYFAPQKNFASDGGLWLAIMSPAA-LERIEAIAASGRWVPEFLSLP--------TAVDNSLKNQTYN 236 (361)
T ss_pred H--------HCCEEEEEchhhcCCCCceEEEEECHHH-HhhhhcccCCCCCCchhhhHH--------HHHhccccCCCCC
Confidence 2 2899999999999999888888877663 33322110 1121110 1111111222221
Q ss_pred -----chHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-C--CceE-EEEEEcCCcchhhhhhhhc
Q 046506 167 -----RSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-R--HFAV-VCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 167 -----~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~--~~~~-v~~~~~~~~~~~~~~~~~~ 236 (310)
..+++.++++.+..+ +++.+.+++.++++++++.|.+.+.++++.. + ..+. .++.+.. +.
T Consensus 237 tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~-g~--------- 306 (361)
T TIGR01366 237 TPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVD-DI--------- 306 (361)
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCC-cc---------
Confidence 224667788877666 6999999999999999999999876776532 1 1222 2233322 11
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
-..++.+.|.++|.....+...-+...+|+|++ .++|++||++++++|++++++
T Consensus 307 ------------~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~-~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 307 ------------DAATVAKILRANGIVDTEPYRKLGRNQLRVAMF-PAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred ------------CHHHHHHHHHHCCCeeccCccccCCCcEEEEcC-CCCCHHHHHHHHHHHHHHHhh
Confidence 114577777777654332221113468999977 479999999999999997764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=170.29 Aligned_cols=244 Identities=12% Similarity=0.099 Sum_probs=155.9
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe--eccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV--DAAY 83 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v--D~a~ 83 (310)
.|+. ++.+|+++ . .+|+++|+++|+++ +.+|++++. |.+|.++|+++|+++||++|+|++| |..
T Consensus 178 ~G~~---~~~v~~~~--~-~~d~~~l~~~i~~~------t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~- 243 (447)
T PRK00451 178 QGIE---VVEVPYED--G-VTDLEALEAAVDDD------TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV- 243 (447)
T ss_pred CCcE---EEEecCCC--C-CCCHHHHHHhcCCC------eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-
Confidence 5666 99999886 3 79999999999754 347777776 7899999999999999999999998 543
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccc-----cccccceEEEEEeCchhHHhhhccCCccccccccccccccCC---
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKW-----FFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY--- 155 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~-----l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~--- 155 (310)
+.+.+..+ +..++|++++++||| +++| |+|+++++++ .+.. ++ +.+........+...+
T Consensus 244 ~~g~~~~~-------~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~-~~~~-~~---~~~~g~~~~~~~~~~~~~~ 310 (447)
T PRK00451 244 SLGLLKPP-------GEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKK-LVRQ-MP---GRLVGETVDADGKRGFVLT 310 (447)
T ss_pred HhccCCCc-------ccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHH-HHhh-CC---CCEeeeecccCCCeeeEee
Confidence 23322211 112699999999997 5556 7999887654 3332 21 1111111000000000
Q ss_pred -----CCceeccCCC-c------chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEc
Q 046506 156 -----KDWQITLSRR-F------RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS 223 (310)
Q Consensus 156 -----~~~~~~~~~~-~------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~ 223 (310)
.......+.. . .+++.+.+++.++.++++++.++..++++++.++|.+++++++...+....+++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~ 390 (447)
T PRK00451 311 LQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLP 390 (447)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecC
Confidence 0000011111 0 113334456667889999999999999999999999998998873332333334432
Q ss_pred CCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEE---EEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 224 PSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAY---MTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.. ..++.++|.++|.+. ..+....-...+|+|++ .++|++||++++++|+++
T Consensus 391 ~~------------------------~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~-~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 391 KP------------------------AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVT-EKRTKEDIDALVAALGEV 445 (447)
T ss_pred CC------------------------HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 11 146777777776541 11111111358999966 579999999999999876
Q ss_pred H
Q 046506 301 L 301 (310)
Q Consensus 301 ~ 301 (310)
+
T Consensus 446 ~ 446 (447)
T PRK00451 446 L 446 (447)
T ss_pred h
Confidence 4
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=159.57 Aligned_cols=245 Identities=17% Similarity=0.136 Sum_probs=149.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcC-CCcEEEEEecc-CCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAG-LIPLFLCATIG-TTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~-~~~~~v~~~~~-~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
...|+. ++.+|.+++ +.+|+++++++|++....+ ..+.+|+++.. ++++|.+.| +++|+++|++||++++
T Consensus 101 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~li 175 (353)
T PLN02721 101 TLGGVH---PRTVKNNED--GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLH 175 (353)
T ss_pred hhcCce---eEecCCCcC--CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEE
Confidence 445665 888888754 5899999999997431111 12456777564 456787766 7899999999999999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
+|+||..+........ ......++|++++++|||+++|.| ++++.+++.+....... .+..
T Consensus 176 vD~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~sK~l~~~~G--~~~~~~~~~~~~~~~~~-~~~~--------------- 236 (353)
T PLN02721 176 IDGARIFNASVALGVP-VHRLVKAADSVSVCLSKGLGAPVG--SVIVGSKSFIRKAKRLR-KTLG--------------- 236 (353)
T ss_pred EEchhhhcchhhhCCC-HHHHhhhCCEEEEecccccCCcee--eEEecCHHHHHhHHHHH-HhcC---------------
Confidence 9999854321111111 011123589999999999998754 34445565443221110 0000
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE-ecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEV-VFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
++.+.......+++..+ +...+.+++..++++++.+.|.+++++++ +.++..+++.+++....
T Consensus 237 ---~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 300 (353)
T PLN02721 237 ---GGMRQVGVLAAAALVAL--QENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS----------- 300 (353)
T ss_pred ---CCeehhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCc-----------
Confidence 00000111111122112 22223345556788899999998888866 55667777777765310
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
......+.++|.+.|.... +. +..++|++++ ++++++|+++++++|++++.
T Consensus 301 ---------~~~~~~~~~~L~~~gi~v~-~~---~~~~lR~~~~-~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 301 ---------RITAEKLCKSLEEHGVLLM-PG---NSSRIRVVTH-HQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred ---------cccHHHHHHHHHhCCcEEe-cC---CCceEEEEec-CcCCHHHHHHHHHHHHHHhh
Confidence 0012467788877775433 32 4568999965 67999999999999998754
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-18 Score=157.66 Aligned_cols=232 Identities=15% Similarity=0.070 Sum_probs=151.0
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhh--hcCC-C
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGV-E 101 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~--~~~~-~ 101 (310)
.+|+++|+++|++.......+.+|+..+..|++|.+.|+++|+++|++||+++++|++|+.+...... .+. ..++ .
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~-~~~~~~~~~~~ 229 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTG-RGSHELCGVMG 229 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCC-CchHHhcCCCC
Confidence 47999999999875333224668888888899999999999999999999999999999765542211 000 1111 2
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc-chHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF-RSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 180 (310)
++|+++.++||+++++. .|+++. ++............+.. .++... ...++.++++.+
T Consensus 230 ~~di~~~s~sK~l~g~r-~G~~~~-~~~~~~~l~~~~~~~~~-----------------~~~~~~~~~~a~~~al~~~-- 288 (393)
T TIGR01822 230 RVDIITGTLGKALGGAS-GGFTTA-RKEVVELLRQRSRPYLF-----------------SNSLPPAVVGASIKVLEML-- 288 (393)
T ss_pred CCeEEEEEChHHhhCCC-cEEEEe-CHHHHHHHHHhCcccee-----------------cCCCCHHHHHHHHHHHHHH--
Confidence 58999999999988764 476654 44443322111112211 111111 122334444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+..+++.++..++.+++.+.|.+. ++.+. ++..+++.+.+.+ .....++.+.|.++
T Consensus 289 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~----------------------~~~~~~l~~~L~~~ 344 (393)
T TIGR01822 289 EASNELRDRLWANTRYFRERMEAA-GFDIK-PADHPIIPVMLYD----------------------AVLAQRFARRLLEE 344 (393)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC----------------------HHHHHHHHHHHHHC
Confidence 235677888899999999999875 77764 3345556555433 11235677778778
Q ss_pred CcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 261 g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|. ++.+..+ .+...+|+|++ ++++++||++++++|+++.+.+
T Consensus 345 gI-~v~~~~~~~~~~~~~~iRis~~-~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 345 GI-YVTGFFYPVVPKGQARIRVQIS-AAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred Ce-eEeeeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 74 4443221 24467999966 6799999999999999987653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=151.83 Aligned_cols=232 Identities=16% Similarity=0.108 Sum_probs=169.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhh--hcC-CC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDG-VE 101 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~--~~~-~~ 101 (310)
+-|+++|+++|.+... ..|.+|.+..+.+|.|.+.||+||++++|+||+..++|..|++|.+.. ...+. -++ +.
T Consensus 286 HND~~hL~~lL~~~~~--svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~-rGaGvgerdGvm~ 362 (570)
T KOG1360|consen 286 HNDLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGP-RGAGVGERDGVMH 362 (570)
T ss_pred cCCHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccC-CCCCccccCCcch
Confidence 4589999999987533 358899999999999999999999999999999999999998876533 11111 022 34
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcc-hHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR-SLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 180 (310)
.+|+++.+..|.|+.- |..+.....+++..-+..+.|++..+- +.. ..++..+.+.+..
T Consensus 363 kvDiIsGTLgKafGcV---GGYIAat~~LvDmiRSyAaGFIFTTSL-----------------PP~vl~GAleaVr~lk~ 422 (570)
T KOG1360|consen 363 KVDIISGTLGKAFGCV---GGYIAATRKLVDMIRSYAAGFIFTTSL-----------------PPMVLAGALEAVRILKS 422 (570)
T ss_pred hhhhcccchhhhcccc---cceehhhhhHHHHHHHhcCceEEecCC-----------------ChHHHHhHHHHHHHHhh
Confidence 5899999999998754 333333343433333556677765532 211 2334455555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+.-...+++.+++.+++++.|.++ |+.++ +..+.|+.+++.. ..++..+.+.|..+
T Consensus 423 ~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi-~~pSHIiPv~vgd----------------------a~l~~~~sd~Li~~ 478 (570)
T KOG1360|consen 423 EEGRVLRRQHQRNVKYVKQLLMEL-GIPVI-PNPSHIIPVRVGD----------------------AALAKQASDILISK 478 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCcceeeeeccC----------------------HHHHHHHHHHHHHh
Confidence 434456667788999999999987 99987 4456788887776 34566788888888
Q ss_pred CcEEEE----EeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMT----HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 261 g~~~~~----~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++|+. |++..|...+|+..+ |+.|++.++.|++++...-+++
T Consensus 479 h~iYvQaINyPTV~rG~E~LRiaPT-P~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 479 HNIYVQAINYPTVARGTERLRIAPT-PHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred cCeEEEeccCCcccccceeeecCCC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 888776 566689999999955 8899999999999998877664
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=159.21 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=147.8
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCC-C
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGV-E 101 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~-~ 101 (310)
..|+++|+++|++.+ +.+|++.+.+|++|.+.|+++|+++|++||+++++|++|+.+..... ..+.. .++ .
T Consensus 167 ~~d~~~l~~~l~~~~-----~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~-g~g~~~~~~~~~ 240 (407)
T PRK07179 167 HNDVDHLRRQIERHG-----PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQ-GAGLVAELGLTS 240 (407)
T ss_pred CCCHHHHHHHHHhcC-----CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCC-CCchHHhcCCCC
Confidence 468999999997531 45788888999999999999999999999999999999976543211 11111 111 2
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhc-cCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhC
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS-TNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYG 179 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 179 (310)
.+|+++.|+||+++.+ +|+++.+ +... +.+. ...++... ++.. ..++++.++++.+
T Consensus 241 ~vdi~~~S~sK~~g~~--~G~l~~~-~~~~-~~~~~~~~~~~~~-----------------~t~~~~~~aa~~aal~~~- 298 (407)
T PRK07179 241 RVHFITASLAKAFAGR--AGIITCP-RELA-EYVPFVSYPAIFS-----------------STLLPHEIAGLEATLEVI- 298 (407)
T ss_pred CCCEEEeechHhhhcc--CeEEEeC-HHHH-HHHHHhCcCeeeC-----------------CCCCHHHHHHHHHHHHHH-
Confidence 4799999999999753 6777665 3332 2221 11111111 1101 1223334445443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 180 ~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
...+++.++..++.+++++.|.++ ++++. ...+++.+.+... .....+.+.|.+
T Consensus 299 -~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~--~~~~i~~l~~~~~----------------------~~~~~~~~~L~~ 352 (407)
T PRK07179 299 -ESADDRRARLHANARFLREGLSEL-GYNIR--SESQIIALETGSE----------------------RNTEVLRDALEE 352 (407)
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC--CCCCEEEEEeCCH----------------------HHHHHHHHHHHH
Confidence 223567788999999999999987 77765 2356676665321 112456677777
Q ss_pred cCcE---EEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKA---YMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~---~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|.+ ++.+....+...+|||++ ..+|++||++++++|+++..+.
T Consensus 353 ~GI~~~~~~~p~~~~~~~~lRis~~-~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 353 RNVFGAVFCAPATPKNRNLIRLSLN-ADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CCceEeeecCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHhh
Confidence 7754 222322334679999976 5799999999999999987664
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=159.41 Aligned_cols=247 Identities=11% Similarity=0.049 Sum_probs=157.3
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhh
Q 046506 17 KTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF 96 (310)
Q Consensus 17 ~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~ 96 (310)
+.+++ ++.+|+++|++++.+.. |.+|++. .+.+|...|+++|+++|+++|++++||+||+.|.+..+....
T Consensus 162 ~~~~~-~g~iD~d~Le~~l~~~~-----pklIv~~--~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~- 232 (475)
T PLN03226 162 RLDES-TGLIDYDKLEKKAMLFR-----PKLIIAG--ASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAAS- 232 (475)
T ss_pred eecCC-CCCcCHHHHHHHHhhcC-----CeEEEEe--cCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC-
Confidence 34442 45899999999997532 4444442 344678889999999999999999999999998876654321
Q ss_pred hcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC-CCceeccCCC-cchHHHHHH
Q 046506 97 IDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY-KDWQITLSRR-FRSLKLWFV 174 (310)
Q Consensus 97 ~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 174 (310)
.+.++|++++++||||++|.| |++++++. ...........+.. +....+. ....++++-. ..++++.++
T Consensus 233 --p~~~~Div~~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~d-----~~~~i~~a~~~~~~g~p~~~~iaal~aA 303 (475)
T PLN03226 233 --PFEYCDVVTTTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVYD-----YEDKINFAVFPGLQGGPHNHTIAALAVA 303 (475)
T ss_pred --CCCCCeEEEecCcccccCCCc-eEEEEchh-hcccccCCCccHHH-----HHHHhccccCCccCCCchHHHHHHHHHH
Confidence 123699999999999999998 77777644 22110000000000 0000000 1112344422 234666777
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHH
Q 046506 175 LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNREL 253 (310)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (310)
++.+...+++++.++..+++++|++.|.+ .|++++.+ ...+++.+.+.+..+. ..++
T Consensus 304 l~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi~---------------------~~~~ 361 (475)
T PLN03226 304 LKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPLGLT---------------------GSRV 361 (475)
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCCCCC---------------------HHHH
Confidence 88776677888999999999999999998 59999864 3456666666543211 0234
Q ss_pred HHHHHhcCcEEEEEeE-----ECCEeEEEEE---ccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 254 LESINASGKAYMTHAV-----LGGIYAIRFA---AGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 254 ~~~l~~~g~~~~~~~~-----~~~~~~iRis---~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+.|.+.|+..-.... .-....+|+. +++...+++|++.+.+.|.+++..
T Consensus 362 ~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 362 EKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred HHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4555555543211110 0123457871 245678999999999999988863
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=152.62 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=142.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGVEG 102 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~~~ 102 (310)
..|+++|+++|++.........+|++.+.++++|.+.|+++|+++|+++|+++|||+||+.|.+..+. .+.. .+..+
T Consensus 124 ~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~~~~~ 202 (370)
T PRK05937 124 HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDG-KGFCHSLGYEN 202 (370)
T ss_pred CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhCCCC
Confidence 57899999999864321112346777899999999999999999999999999999999877654432 1110 11223
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
.+.+..+++|+++ |.|+|+++.++ .........+++.+. .+.+ +..+++.++++.+...
T Consensus 203 ~~~~~~tlsK~~g-~~G~~vl~~~~--~~~~~~~~~~~~~~s-----------------~~~~~~~~~a~~aal~~l~~~ 262 (370)
T PRK05937 203 FYAVLVTYSKALG-SMGAALLSSSE--VKQDLMLNSPPLRYS-----------------TGLPPHLLISIQVAYDFLSQE 262 (370)
T ss_pred CcEEEEechhhhh-cCceEEEcCHH--HHHHHHHhCCCCeec-----------------CCCCHHHHHHHHHHHHHHHhC
Confidence 3456788889875 67888776432 211211111223221 1111 2334455666655333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
+ +...+++.++.+++.+.|.... + ..+..+.+... ..+.+.+.|.++|
T Consensus 263 ~-~~~~~~l~~l~~~l~~~l~~~~-------~-~~~~~i~~~~~-----------------------~~~~~~~~L~~~g 310 (370)
T PRK05937 263 G-ELARKQLFRLKEYFAQKFSSAA-------P-GCVQPIFLPGI-----------------------SEQELYSKLVETG 310 (370)
T ss_pred c-HHHHHHHHHHHHHHHHhcCCCC-------C-CCEEEEEeCCh-----------------------hHHHHHHHHHHCC
Confidence 3 4566788888899988886421 0 11222333321 1245667777777
Q ss_pred cEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 262 KAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 262 ~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. ++....+...+.+|+|++ +++|+|||++++++|+++..++.
T Consensus 311 i-~v~~~~~~~~~~iRis~~-~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 311 I-RVGVVCFPTGPFLRVNLH-AFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred e-eEEeeCCCCCCEEEEEcC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 4 444322233568999966 68999999999999999887753
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=156.25 Aligned_cols=235 Identities=9% Similarity=0.069 Sum_probs=148.1
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhh
Q 046506 15 AIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR 94 (310)
Q Consensus 15 ~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~ 94 (310)
..+.++. .+.+|+++|++++.+. .+.+|+++. +..|...|+++|.++|++||++++||+||+.|........
T Consensus 145 ~~~~~~~-~~~~d~~~le~~l~~~-----~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~ 216 (416)
T PRK13034 145 QYGVDRL-TGLIDYDEVEELAKEH-----KPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHP 216 (416)
T ss_pred Ecccccc-cCCcCHHHHHHHHhhc-----CCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCC
Confidence 3444443 3469999999998653 144555433 3467788999999999999999999999988876543211
Q ss_pred hhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc-chHHHHH
Q 046506 95 HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF-RSLKLWF 173 (310)
Q Consensus 95 ~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 173 (310)
..+.++|++++++|||+++|.| |+++.+++.. ...... +++.. ++.+..+ ..+++..
T Consensus 217 ---~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~-~~~~~~---~~~~~--------------~~~~~~~~~~aa~~~ 274 (416)
T PRK13034 217 ---NPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEI-AKKINS---AVFPG--------------LQGGPLMHVIAAKAV 274 (416)
T ss_pred ---CCCCCceEEEEeCcccCCCCCC-eEEEECcHHH-HHHHHh---hcCCc--------------ccCCccHHHHHHHHH
Confidence 1234599999999999988876 5555554432 222110 11111 0111111 1222222
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHH
Q 046506 174 VLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRE 252 (310)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (310)
++...-..+..++.++.++++++|++.|.+. |+++..+ .+++++.+.+..... -...
T Consensus 275 al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~---------------------~~~~ 332 (416)
T PRK13034 275 AFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGL---------------------SGKD 332 (416)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCC---------------------CHHH
Confidence 3322222344567899999999999999987 9998743 567777776654321 0134
Q ss_pred HHHHHHhcCcEEEEEe-------EECCEeEEEEEccCC----CCCHHHHHHHHHHHHHHHHH
Q 046506 253 LLESINASGKAYMTHA-------VLGGIYAIRFAAGAT----LTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 253 l~~~l~~~g~~~~~~~-------~~~~~~~iRis~~~~----~~t~edi~~li~~l~~~~~~ 303 (310)
+.+.|.+.|. ++... .+.....+|++++ . ..+++||++++++|++++..
T Consensus 333 ~~~~L~~~GI-~v~~~~~p~~~~~p~~~~~lR~~~~-~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 333 AEQALERAGI-TVNKNTVPGDTESPFVTSGIRIGTP-AGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred HHHHHHhCCc-EEeccCCCCCCcCCCCCCeeEeCcH-HHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 5566777774 44321 1112567999944 5 56699999999999987753
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=156.72 Aligned_cols=241 Identities=17% Similarity=0.109 Sum_probs=145.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc-CCCcEEEEEeccCCcccc---cCChHHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA-GLIPLFLCATIGTTAITA---VDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~-~~~~~~v~~~~~~~~~G~---~~pl~~I~~l~~~~g~~l~vD 80 (310)
+.|+. ++.+|.+. +.+|+++|++++++.... ...+.+|++.+.+|. |. .+++++|+++|++||++++||
T Consensus 93 ~~g~~---~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livD 165 (338)
T cd06502 93 LSGVK---LLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLD 165 (338)
T ss_pred HcCce---EEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeec
Confidence 45665 88888753 479999999999752110 012457777777775 54 466788999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+||..+....... .......++|+++.++|||++.|.| .+++.+++.++........+.
T Consensus 166 ea~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~~~~~~g--~~~~~~~~~~~~~~~~~~~~~------------------ 224 (338)
T cd06502 166 GARLANAAAALGV-ALKTYKSGVDSVSFCLSKGGGAPVG--AVVVGNRDFIARARRRRKQAG------------------ 224 (338)
T ss_pred hHHHHHHHHhcCC-CHHHHHhcCCEEEEeccccCCCccc--eEEECCHHHHHHHHHHHHHhC------------------
Confidence 9985432111100 0000012589999999999998853 344455544433211111110
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
++.+...+..++++..+...++.++.++..++++++.+.|+++ ++.+. ++..+++.+.+....
T Consensus 225 -~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~v~~~~~~-------------- 287 (338)
T cd06502 225 -GGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGLES-EVQTNIVLLDPVEAN-------------- 287 (338)
T ss_pred -CChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCcc-cccCCeEEEecCCcc--------------
Confidence 0001122233344444444456778889999999999999987 55443 566788877765321
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.....+.+++.+. .+.|. ++.+. +...+|++++ ++++++|++++++++++
T Consensus 288 ---~~~~~l~~~l~~~-~~~gi-~~~~~---~~~~lRi~~~-~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 288 ---AVFVELSKEAIER-RGEGV-LFYAW---GEGGVRFVTH-WDTTEEDVDELLSALKA 337 (338)
T ss_pred ---HHHHHHHHHHHHh-hhCCE-EEEec---CCCeEEEEee-cCCCHHHHHHHHHHHhc
Confidence 0111222222222 24553 33322 1278999955 78999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=154.20 Aligned_cols=228 Identities=13% Similarity=0.046 Sum_probs=142.4
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
+++++.+ +.+|+++++++|+++++ .++.+++.++.+|.+.|+++|+++||+||+++++|+||+.. ...
T Consensus 127 ~v~v~~~----~~~d~~~le~ai~~~t~-----ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~---~~~ 194 (363)
T TIGR01437 127 VVEAGYA----NECSAEQLEAAITEKTA-----AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED---LQK 194 (363)
T ss_pred EEEEcCC----CCCCHHHHHHhcChhce-----EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCc---hHH
Confidence 6777664 26999999999988753 23334555678899999999999999999999999999621 111
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLW 172 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (310)
. ... ++|++++|+||++++|. .|+++. ++..+..... +...... .++.+. ...+++.
T Consensus 195 ~----~~~-g~D~~~~S~~K~l~gp~-~G~l~~-~~~~i~~~~~----~~~~~~~-----------~~~~~~-~~~~gl~ 251 (363)
T TIGR01437 195 Y----YRL-GADLVIYSGAKAIEGPT-SGLVLG-KKKYIEWVKL----QSKGIGR-----------AMKVGK-ENILGLT 251 (363)
T ss_pred H----HHc-CCCEEEEeCCcccCCCc-eEEEEE-cHHHHHHHHh----ccCCCcc-----------eeccCH-HHHHHHH
Confidence 0 111 48999999999999997 677664 4434432211 1111000 001110 1235666
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-------ceEEEEEEcCCcchhhhhhhhccccchhHHH
Q 046506 173 FVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-------FAVVCFRVSPSAVMDKLKTKYENSLLSEEER 245 (310)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (310)
+++..+...+.+... +..+.++++++.|.++||+++..++. ...+.|.....+.
T Consensus 252 aAl~~~~~~~~~~~~-~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~------------------ 312 (363)
T TIGR01437 252 AALEQYLSTGKESGA-EMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGM------------------ 312 (363)
T ss_pred HHHHHHHccCcccHH-HHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCC------------------
Confidence 666655332333333 33345678999999999998874321 1334444421111
Q ss_pred HHHHHHHHHHHHHhcCc-EEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 246 INEFNRELLESINASGK-AYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 246 ~~~~~~~l~~~l~~~g~-~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
-..++.+.|.+.+. ++..+ .....+.+|+++. .++++|++.++++|+++
T Consensus 313 ---~~~~l~~~L~~~~~~I~~r~-~~~~~~~~~l~~~--~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 313 ---TAADVVQALRQGEPAIYTRG-YKANEGIIEIDPR--SVTGGQLDIIVERIREI 362 (363)
T ss_pred ---CHHHHHHHHhcCCCCEEEee-eeecCCeEEEEee--cCCHHHHHHHHHHHHHh
Confidence 01467777766553 34432 2345668898855 36799999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=142.84 Aligned_cols=258 Identities=10% Similarity=0.050 Sum_probs=180.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC-hHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT-LKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p-l~~I~~l~~~~g~~l~vD~ 81 (310)
++-+|.+ |.+|+.++++ .+..+.++++|..++ |.+++++|+.|.+|..+| ++.+.++||+|+++++||+
T Consensus 111 ~~r~ga~---V~~v~~~~G~--~~~le~i~~~lsqh~-----p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~ 180 (385)
T KOG2862|consen 111 ARRYGAE---VDVVEADIGQ--AVPLEEITEKLSQHK-----PKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDT 180 (385)
T ss_pred HHhhCce---eeEEecCccc--CccHHHHHHHHHhcC-----CceEEEEecCccccccchHHHHHHHHhhcCCeEEEEec
Confidence 3446666 9999999865 799999999998864 779999999999999999 7778899999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchh--HHhhhccCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD--LVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
..+.+..++..... ++|+......|.+++|.|.+.+...++.. +++..+....|.+..- .....|.. .
T Consensus 181 VaSlggt~F~mDew------gVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~-~~~~~wgc---~ 250 (385)
T KOG2862|consen 181 VASLGGTEFEMDEW------GVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDIL-RLGNFWGC---D 250 (385)
T ss_pred hhhcCCccceehhh------cccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHH-hhcchhcc---C
Confidence 98888776643221 59999999999999999999988776643 1111111111111110 00000000 0
Q ss_pred eccCCCc-------chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC---CCceEEEEEEcCCcchh
Q 046506 160 ITLSRRF-------RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP---RHFAVVCFRVSPSAVMD 229 (310)
Q Consensus 160 ~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~---~~~~~v~~~~~~~~~~~ 229 (310)
.+. |.+ ...++-++|..+.++|+++.++++.+++++++..|.++ |++.... .+.+.++-.-.|..+
T Consensus 251 ~e~-~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv-- 326 (385)
T KOG2862|consen 251 GEP-RAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV-- 326 (385)
T ss_pred Ccc-cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCCC--
Confidence 000 221 23567788888889999999999999999999999987 7776542 233333322223211
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
| -.++...+..++.+.+.+.. .-...++||-+...+.+.|.|+..++.|+..+.+
T Consensus 327 ------------D-------w~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 327 ------------D-------WKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ------------C-------HHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 1 13566777777766665432 1246799999998889999999999888876654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=152.41 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=149.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. +++++++++ ++.+|+++|++++++. +.+|++++ ++|.+.|+++|.++|+++|+++++|++
T Consensus 75 ~~~~g~~---~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a 141 (352)
T cd00616 75 ILLLGAT---PVFVDIDPD-TYNIDPELIEAAITPR------TKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAA 141 (352)
T ss_pred HHHcCCe---EEEEecCCC-cCCcCHHHHHHhcCcC------CeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECC
Confidence 3445676 899999863 4689999999998643 33565543 579999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeee--cccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLN--AHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+.+....... ... ..|+.++| .|||++++. .|+++.+++....+.... ...+.... ..+....
T Consensus 142 ~~~g~~~~~~~---~~~--~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 208 (352)
T cd00616 142 QALGATYKGRK---VGT--FGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAERARLLRNHGRDRDR-------FKYEHEI 208 (352)
T ss_pred CCCCCeECCEE---ccc--CcceeEEcCCCCCCCcccC-ceEEEECCHHHHHHHHHHHHcCCCCCC-------Cccccce
Confidence 98776533210 111 14555555 559995443 355555555443322110 00000000 0000001
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----ceEEEEEEcCCcchhhhhhh
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----FAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~~~~~~~~~~~~~~~~ 234 (310)
.....+...+. +++.....++++++.++..++++++++.|.++++++++.++. ..+++|.+.+..
T Consensus 209 ~~~~~~~~~~~--aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------- 278 (352)
T cd00616 209 LGYNYRLSEIQ--AAIGLAQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA-------- 278 (352)
T ss_pred eeeccCcCHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC--------
Confidence 11111112222 222223346778888999999999999999999999875432 356777775310
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEE---EEEeEEC--------------------CEeEEEEEccCCCCCHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAY---MTHAVLG--------------------GIYAIRFAAGATLTEERHVM 291 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~--------------------~~~~iRis~~~~~~t~edi~ 291 (310)
.....++.+.|.++|... +.+.... ....+|++++ +++|++||+
T Consensus 279 ------------~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~-~~~t~~di~ 345 (352)
T cd00616 279 ------------GESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLH-PSLTEEEID 345 (352)
T ss_pred ------------CCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCC-CCCCHHHHH
Confidence 000145677777776522 1121110 0268999955 789999999
Q ss_pred HHHHHHH
Q 046506 292 VAWTVVQ 298 (310)
Q Consensus 292 ~li~~l~ 298 (310)
+++++|+
T Consensus 346 ~i~~~l~ 352 (352)
T cd00616 346 RVIEALR 352 (352)
T ss_pred HHHHHhC
Confidence 9999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=144.86 Aligned_cols=242 Identities=16% Similarity=0.177 Sum_probs=162.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc-CC-CcEEEEEeccCCccc-ccCChH---HHHHHHHHhCcE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA-GL-IPLFLCATIGTTAIT-AVDTLK---PLCDVAKQFGIW 76 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~-~~-~~~~v~~~~~~~~~G-~~~pl~---~I~~l~~~~g~~ 76 (310)
+++.|+. ++.|...+++ .|+++++|++|+..... +. .+.+||+..-.+..| .+.||+ +|.++|++||+.
T Consensus 116 s~l~gv~---~~tv~~e~dg--tm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glk 190 (384)
T KOG1368|consen 116 SQLAGVH---VRTVKNENDG--TMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLK 190 (384)
T ss_pred hhhccce---eEeeeeCCCC--eeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCe
Confidence 4556665 8888888754 89999999999854421 22 335777765555555 777765 577899999999
Q ss_pred EEeecccccccc---cChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 77 VHVDAAYAGSAC---ICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 77 l~vD~a~~~~~~---~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
||.|||.-..+. ..+-.+ . ...+|+++++..|.+++|.|+ ++|.++..+.++- ++..
T Consensus 191 LH~DGARi~NAavasgV~vk~-i---~~~fDSVsiCLSKglgAPVGS--ViVG~k~FI~kA~-----~~RK--------- 250 (384)
T KOG1368|consen 191 LHMDGARIFNAAVASGVPVKK-I---CSAFDSVSICLSKGLGAPVGS--VIVGSKDFIDKAR-----HFRK--------- 250 (384)
T ss_pred eecchhhhhhHHHHcCCCHHH-H---HHhhhhhhhhhhccCCCCccc--EEEccHHHHHHHH-----HHHH---------
Confidence 999999743322 122111 1 135999999999999999866 6667776655442 1111
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhh
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~ 232 (310)
.+.+|.|. .++.++...+..+.-...+++.++.++.+++.+...+++++-.+ .++|++.+.+..+.+
T Consensus 251 -----alGGGmRQ--sGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~----- 318 (384)
T KOG1368|consen 251 -----ALGGGMRQ--SGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARL----- 318 (384)
T ss_pred -----HhcCchhH--HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccC-----
Confidence 22334332 22222222333333334778888999999999998877988655 578888877655421
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHH-HHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ-EHLE 302 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~-~~~~ 302 (310)
-.+++.+.+.++|...+.. ...++|++++ ++.|+++++.++.+++ .+..
T Consensus 319 ----------------~~~~l~~~~~k~gi~lm~~----~s~r~Rivlh-~Qvt~~~ve~~~~~~~k~~~~ 368 (384)
T KOG1368|consen 319 ----------------TAEELCKFLEKNGILLMGG----ASRRIRIVLH-HQVTDEDVEYVKSVLSKKFLK 368 (384)
T ss_pred ----------------CHHHHHHHHHHCCeEEeec----cccceEEEEE-EecCHHHHHHHHHHHHHHHHh
Confidence 1257788888888655543 2456999966 6899999999999994 4443
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-17 Score=146.71 Aligned_cols=227 Identities=11% Similarity=-0.019 Sum_probs=143.9
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh-h-hhhhcCCCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE-F-RHFIDGVEGA 103 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~-~-~~~~~~~~~~ 103 (310)
+|+++++++|++.. ....+.++++.+.+|.+|...|+++|+++|+++|+++++|++|+.+...... . ........+.
T Consensus 115 ~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~ 193 (349)
T cd06454 115 NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDV 193 (349)
T ss_pred CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccC
Confidence 57889999998643 1123567888888899999999999999999999999999999765442110 0 0000112358
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 182 (310)
|+++.++||+++.+ | |+++ .++..+.........+.. .++.. ...+++.++++.+..
T Consensus 194 ~i~~~s~sK~~~~~-g-G~i~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~l~~~~~-- 251 (349)
T cd06454 194 DIIMGTLGKAFGAV-G-GYIA-GSKELIDYLRSYARGFIF-----------------STSLPPAVAAAALAALEVLQG-- 251 (349)
T ss_pred cEEEeechhhhccc-C-CEEE-CCHHHHHHHHHhchhhhc-----------------cCCCCHHHHHHHHHHHHHHhc--
Confidence 99999999999864 3 5554 444443332211111111 01111 122344455544422
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
.+++.++..++++++.+.|.++ +++++.++...+..+...+. ....++.+.|.++|.
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~L~~~gI 308 (349)
T cd06454 252 GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDP----------------------AKAVAFSDALLERGI 308 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCCh----------------------HHHHHHHHHHHhCCc
Confidence 4677888999999999999886 77766544443344433211 122567788888865
Q ss_pred EEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 263 AYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 263 ~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
++.+... .+...+|++++ .+++++|+++++++|+++
T Consensus 309 -~~~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 309 -YVQAIRYPTVPRGTARLRISLS-AAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -eEEEecCCccCCCCCeEEEEEe-CCCCHHHHHHHHHHHHHh
Confidence 4433211 12478999965 679999999999999875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=151.21 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=146.2
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCC-CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGV-EG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~ 102 (310)
.|+++++++++.... ..+.+|++.+++|++|.+.|+++|+++|++||++++||+||+.+.+. +...+.. .++ ..
T Consensus 161 ~d~~~l~~~l~~~~~--~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g-~~g~g~~~~~~~~~~ 237 (402)
T TIGR01821 161 NDVAHLEKLLQSVDP--NRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYG-PRGGGIAERDGLMHR 237 (402)
T ss_pred CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccC-CCCCccchhccCCCC
Confidence 477899998874311 12568889999999999999999999999999999999999855431 1111111 111 23
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
+|++..+..|.++.+. |++ +.++..+.......++|.+ ..+.. ..+.++.++++.+...
T Consensus 238 ~div~~t~sKa~g~~G--G~i-~~~~~~~~~l~~~~~~~~~-----------------t~~~~~~~~aaa~aaL~~~~~~ 297 (402)
T TIGR01821 238 IDIIEGTLAKAFGVVG--GYI-AASRKLIDAIRSYAPGFIF-----------------TTSLPPAIAAGATASIRHLKES 297 (402)
T ss_pred CeEEEEechhhhccCC--cee-ecCHHHHHHHHHhCcCcee-----------------cCcCCHHHHHHHHHHHHHhhcC
Confidence 6888889999998653 444 3444443222111222221 11111 1233444555544222
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
+.+.++..++.+++.+.|+++ +++++ ++.++++.+.+.. .....++.+.|.++.
T Consensus 298 --~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~i~~~~----------------------~~~a~~~~~~L~~~~ 351 (402)
T TIGR01821 298 --QDLRRAHQENVKRLKNLLEAL-GIPVI-PNPSHIVPVIIGD----------------------AALCKKVSDLLLNKH 351 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC----------------------HHHHHHHHHHHHhcC
Confidence 445566678999999999886 77765 3456677665432 112346777776553
Q ss_pred cEEEEEe----EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHA----VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~----~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+++.+. +..+..++|++++ .++|++||++++++|+++.+++
T Consensus 352 Gi~v~~~~~p~~~~g~~~lRis~~-~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 352 GIYVQPINYPTVPRGTERLRITPT-PAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CEEEEeECCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 3555442 2234578999966 5799999999999999988654
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=151.67 Aligned_cols=245 Identities=15% Similarity=0.099 Sum_probs=147.6
Q ss_pred eecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 4 QIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+..|.. ++.++.+.+ +++.+|++++++++.+.. +.++++++. ..|...|+++|+++|++||+++++|++
T Consensus 128 ~~~g~~---~~~~~~~~~~~~~~id~~~l~~~i~~~~-----~~~v~~~~~--~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 128 SASGKL---FESVPYGVDPETGLIDYDALEKMALEFK-----PKLIVAGAS--AYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred ccccee---EEEecCCcCcccCCcCHHHHHHHHHhCC-----CCEEEecCc--ccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 344543 666766543 146899999999996431 345555444 346778999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|..+......... .+.++|+++.|+|||+.+|.|.+ ++.+++....+......++....
T Consensus 198 ~~~g~~~~g~~~~---~~~~~dv~~~s~sK~l~G~~gg~-i~~~~~~~~~~l~~~~~~~~~~~----------------- 256 (402)
T cd00378 198 HVAGLVAGGVFPN---PLPGADVVTTTTHKTLRGPRGGL-ILTRKGELAKKINSAVFPGLQGG----------------- 256 (402)
T ss_pred chhhhhhcccCCC---cccCCcEEEeccccCCCCCCceE-EEeccHHHHHHHHHHhCccccCC-----------------
Confidence 8665432211111 11257999999999998787644 44444334332211111111100
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
.......++..++.......+++++++..++++++++.|.+. |+.+.. +..++++.+.+.+...
T Consensus 257 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~-------------- 321 (402)
T cd00378 257 PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKGI-------------- 321 (402)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccCC--------------
Confidence 000112222333333323366778888999999999999987 888763 3456677777653210
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEE---EeEE---CCEeEEEEEccCCCC----CHHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMT---HAVL---GGIYAIRFAAGATLT----EERHVMVAWTVVQEHLE 302 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~---~~~~---~~~~~iRis~~~~~~----t~edi~~li~~l~~~~~ 302 (310)
+ ...+.+.+.+.|..... |... .....+|++++ ..+ +++||+.+++.|++++.
T Consensus 322 ~-------~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~-~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 322 T-------GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTP-AMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred C-------HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCH-HHHHhCCCHHHHHHHHHHHHHHHh
Confidence 0 02344455556643321 1111 13468999955 333 69999999999998664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=133.88 Aligned_cols=261 Identities=14% Similarity=0.096 Sum_probs=176.9
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcC-CCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAG-LIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~-~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
||...|+. |..||......|.++++...+.|.+-++++ ..|.+..+||.....|.+.+.++++++|+++|+++++.
T Consensus 116 AAEragl~---v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN 192 (382)
T COG1103 116 AAERAGLN---VAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLN 192 (382)
T ss_pred HHHhcCCe---EEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEee
Confidence 46677887 999998877789999999999999877764 56889999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|+..+-.+.+.. .+ ++|+++.|+||.+.+...+|++-++.. +-...+..+..+...... -.+
T Consensus 193 ~AYt~Grmpvs~k-----e~-g~DFiVgSGHKsmAAs~PiGvl~~~eE-~ae~V~r~Sg~~~~~KEv----------ell 255 (382)
T COG1103 193 CAYTVGRMPVSGK-----EI-GADFIVGSGHKSMAASAPIGVLAMSEE-WAEIVLRRSGRAFPKKEV----------ELL 255 (382)
T ss_pred cceeecccccccc-----cc-CCCEEEecCccchhccCCeeEEeehhH-HHHHHHhhccccccccee----------eee
Confidence 9999998876532 22 599999999999998888999987755 322333222222222111 122
Q ss_pred ccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CC-ceEEEEEEcCCcchhhhhhhhcc
Q 046506 161 TLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RH-FAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.++.| +....+.+++-.. . ..-.+++...+.+++|.+.|.++.|+..++. |. -.++.|-.+.-. .+
T Consensus 256 GCT~rGapivTlmASfP~V-~-eRVkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~---------eI 324 (382)
T COG1103 256 GCTVRGAPIVTLMASFPHV-V-ERVKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFH---------EI 324 (382)
T ss_pred cccccCchHHHHHhcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHH---------HH
Confidence 33322 3333333332211 1 1234566778899999999999988988764 33 334444332210 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+..+. ...-.+++.|.++|+.-+.+ +....+.+| . +..+.|+++++++++++++++
T Consensus 325 akk~~-----r~gyFlY~ELK~RgI~GI~~---G~Tk~~K~s-v-yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 325 AKKHK-----RKGYFLYEELKKRGIHGIQP---GQTKYFKLS-V-YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred HHhCc-----CCceeeHHHHHhcCcccccc---CceeEEEEE-e-ecCCHHHHHHHHHHHHHHHHh
Confidence 00000 00013455566666544333 246788888 4 678999999999999999875
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-17 Score=150.26 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=146.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCC-CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGV-EG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~ 102 (310)
.|+++|++.++.... ..+.+|++.+..+++|.+.|+++|.++|++||++++||+||+.+.+. +...... .++ ..
T Consensus 162 ~d~~~le~~l~~~~~--~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g-~~g~g~~~~~~~~~~ 238 (407)
T PRK09064 162 NDVAHLEELLAAADP--DRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYG-PRGGGIAERDGLMDR 238 (407)
T ss_pred CCHHHHHHHHHhccC--CCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccC-CCCCChHHhcCCCCC
Confidence 477899999874321 12568899999999999999999999999999999999999755321 1111111 111 24
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
.|+++.+.+|.++.+ | |+++ .+++.+.......++|.+ ..+.+ ..+.++.++++.+...
T Consensus 239 ~div~~t~sKa~g~~-G-G~~~-~~~~~~~~l~~~~~~~~~-----------------t~~~~~~~~~aa~~al~~~~~~ 298 (407)
T PRK09064 239 IDIIEGTLAKAFGVM-G-GYIA-GSAALVDAVRSYAPGFIF-----------------TTSLPPAIAAAALASIRHLKES 298 (407)
T ss_pred CeEEEEecchhhhcc-C-ceEe-cCHHHHHHHHHhCccccc-----------------cCcCCHHHHHHHHHHHHHHhcC
Confidence 688888999998754 3 5544 444443222111222221 11111 2234445555554322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
....++..++.+++.+.|.++ |++++ ++..+++.+.+.. .....++.+.|.++.
T Consensus 299 --~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~iv~i~~~~----------------------~~~~~~l~~~L~~~~ 352 (407)
T PRK09064 299 --NEERERHQERAAKLKAALDAA-GIPVM-PNESHIVPVMVGD----------------------PEKCKKASDMLLEEH 352 (407)
T ss_pred --HHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC----------------------HHHHHHHHHHHHHhC
Confidence 344678889999999999886 77765 3456677665532 112356777776543
Q ss_pred cEEEEEe----EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHA----VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~----~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+++.+. +..+..++|+|++ .++|++|+++++++|+++..++
T Consensus 353 gi~v~~~~~p~~~~~~~~lRis~~-~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 353 GIYVQPINYPTVPRGTERLRITPT-PFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred CEEEeeECCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 3455432 2234578999966 6799999999999999988664
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=151.32 Aligned_cols=241 Identities=13% Similarity=0.062 Sum_probs=148.4
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccCh
Q 046506 12 NFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICP 91 (310)
Q Consensus 12 ~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~ 91 (310)
.++.++.+++ ++.+|+++|+++|++.. +.+++++. +..|...|+++|+++|++||+++++|+||+.+.....
T Consensus 139 ~~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g 210 (416)
T PRK00011 139 NVVSYGVDEE-TGLIDYDEVEKLALEHK-----PKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAG 210 (416)
T ss_pred eEeecCcCcc-cCCcCHHHHHHHHHhcC-----CCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccC
Confidence 3677777743 36899999999997531 33555432 3457778999999999999999999999976654321
Q ss_pred hhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHH
Q 046506 92 EFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKL 171 (310)
Q Consensus 92 ~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (310)
.... .+.++|+++.|+||++.+|.|. +++.+++............+..... ......++
T Consensus 211 ~~~~---~~~~~di~~~S~~K~l~g~~gg-~i~~~~~~~~~~l~~~~~~~~~~~~-----------------~~~~~aa~ 269 (416)
T PRK00011 211 VHPS---PVPHADVVTTTTHKTLRGPRGG-LILTNDEELAKKINSAVFPGIQGGP-----------------LMHVIAAK 269 (416)
T ss_pred ccCC---CCCCCcEEEecCCcCCCCCCce-EEEeCCHHHHHHHHHHhCccccCCc-----------------cHHHHHHH
Confidence 1111 1125899999999999877654 4545444443322111111110000 00112223
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
..++.....++++++.++..++++++++.|.+. |+++.. ....+++.+.+.+... ..
T Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~---------------------~~ 327 (416)
T PRK00011 270 AVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSKGL---------------------TG 327 (416)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcccCC---------------------CH
Confidence 333333334567889999999999999999986 787763 2345677676643210 01
Q ss_pred HHHHHHHHhcCcEEEEE---e---EECCEeEEEEEccC---CCCCHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTH---A---VLGGIYAIRFAAGA---TLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~---~---~~~~~~~iRis~~~---~~~t~edi~~li~~l~~~~~~ 303 (310)
.++.+.|.+.|...... . .......+|++... ...+++|+++++++|++++..
T Consensus 328 ~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 328 KEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 34666676677543211 1 11123468986321 235799999999999987654
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-17 Score=150.13 Aligned_cols=256 Identities=9% Similarity=0.028 Sum_probs=160.9
Q ss_pred eecCCCCCCEEEEe--cCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 4 QIVGIDVKNFRAIK--TTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~--~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
...|+. +..+| .++. ++.+|.+++++..... +|.+|++.+..+. ...|+++|+++|+++|++++||+
T Consensus 265 s~sG~~---~~~vpY~~d~~-~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~ 333 (586)
T PLN02271 265 SGASIF---FESLPYKVNPQ-TGYIDYDKLEEKALDF-----RPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDM 333 (586)
T ss_pred ccccce---EEEEEcccccc-cCccCHHHHHHHhhhc-----CCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEEC
Confidence 334544 56666 5543 4689999999965432 2677777655554 56889999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccc-----cccccCC-
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATE-----SKQVVDY- 155 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~~- 155 (310)
||.+|.+....+.. -+.++|++++++||||.+|.| |++++++... ... .+-....+.. ....++.
T Consensus 334 AH~aGLIa~g~~~s---P~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~---~g~~gs~s~~~~~~d~~~kI~~a 404 (586)
T PLN02271 334 AHISGLVAAKECVN---PFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRK---QGMLLSHGDDNSHYDFEEKINFA 404 (586)
T ss_pred cccccccccCcCCC---CCcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccc---cCCccccccccccHHHHHHhhcc
Confidence 99999887654421 133699999999999999999 7777765411 110 0000000000 0000111
Q ss_pred CCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhh
Q 046506 156 KDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~ 233 (310)
....+|+|... ..+++..+++......+.+..++..+|++.|.+.|.+. |++++.. .+..++.+.+.+.++.
T Consensus 405 VfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g~~----- 478 (586)
T PLN02271 405 VFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLGLT----- 478 (586)
T ss_pred cCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccCCC-----
Confidence 11145555442 34566677777666778999999999999999999886 9998853 4567777777653211
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe----E--ECCEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHA----V--LGGIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~--~~~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
. ....+.|.+-| +.+... . ....+.||+... .....++|++.+.+.|.+.+.
T Consensus 479 -------------G---~~ae~~Le~~~-I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 479 -------------G---KNYEKVCEMCH-ITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred -------------H---HHHHHHHHHcC-eEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 1 22333343334 333211 1 112457888622 233456888887777776654
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=148.04 Aligned_cols=224 Identities=11% Similarity=-0.011 Sum_probs=152.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhc--C-CC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--G-VE 101 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~--~-~~ 101 (310)
+-|+++|+++|+.... ...+|++....++.|.+.|+++|.++|++||++|+||.||+.+.+. +..++... + ..
T Consensus 233 HND~~~Le~~L~~~~~---~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G-~~G~G~~e~~g~~~ 308 (476)
T PLN02955 233 HCDMYHLNSLLSSCKM---KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCG-ENGGGVAEEFNCEA 308 (476)
T ss_pred CCCHHHHHHHHHhCCC---CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceec-CCCCcHHHHhCCCC
Confidence 4689999999976532 2357888889999999999999999999999999999999877543 22222221 1 13
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|+++.+..|.++.. |.+++.++............|++..+. -++.+.+..++++.+..+
T Consensus 309 di~ii~~TLsKA~G~~---GGfi~gs~~~~~~l~~~~~~~ifStal----------------pp~~aaa~laal~l~~~~ 369 (476)
T PLN02955 309 DVDLCVGTLSKAAGCH---GGFIACSKKWKQLIQSRGRSFIFSTAI----------------PVPMAAAAYAAVVVARKE 369 (476)
T ss_pred CCcEEEEeCccchhcc---CceeecHHHHHHHHHHhCCCCeecccc----------------cHHHHHHHHHHHHHHhcC
Confidence 5899999999998754 334445554432222334455554421 011233344455544222
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
..++++++++.+++++.+ |+.+ .++|+.+.+.. +.....+.+.|.++|
T Consensus 370 --~~~r~~L~~n~~~fr~~~----G~~~----~sPI~pI~ig~----------------------~~~a~~~~~~L~~~G 417 (476)
T PLN02955 370 --KWRRKAIWERVKEFKALS----GVDI----SSPIISLVVGN----------------------QEKALKASRYLLKSG 417 (476)
T ss_pred --HHHHHHHHHHHHHHHHhc----CCCC----CCCEEEEEeCC----------------------HHHHHHHHHHHHHCC
Confidence 347788889999998842 4442 36778777765 333456788898898
Q ss_pred cEEE---EEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYM---THAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~---~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.. .|+++.+...+|++++ ...|++||++++++|.++...+
T Consensus 418 i~v~~i~yPtVP~g~~rLRi~ls-A~Ht~edId~lv~~L~~~~~~~ 462 (476)
T PLN02955 418 FHVMAIRPPTVPPNSCRLRVTLS-AAHTTEDVKKLITALSSCLDFD 462 (476)
T ss_pred CEEEEECCCCCCCCCceEEEeeC-CCCCHHHHHHHHHHHHHHHhhh
Confidence 5422 2456678889999977 5799999999999999876543
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-16 Score=146.50 Aligned_cols=247 Identities=10% Similarity=0.043 Sum_probs=155.7
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHc----CCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEA----GLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~----~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
+++++.+ |+++++..+.+.... .....+|++....+++|.+.|+++|+++|++||+++++|.+|+.+.+
T Consensus 217 ~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvl 289 (481)
T PLN02822 217 IVYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVL 289 (481)
T ss_pred EEEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 6666553 356677777653221 11125788888889999999999999999999999999999985544
Q ss_pred cChhhhhhh--cCC--CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 89 ICPEFRHFI--DGV--EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 89 ~~~~~~~~~--~~~--~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
. ...++.. .++ ..+|+++.+.+|.++++ | |++ +.++..++........|.+ .++.
T Consensus 290 G-~~G~G~~e~~~v~~~~~dii~~s~sKalg~~-G-G~i-~g~~~ii~~~~~~~~~~~f-----------------sa~l 348 (481)
T PLN02822 290 G-KSGRGLSEHFGVPIEKIDIITAAMGHALATE-G-GFC-TGSARVVDHQRLSSSGYVF-----------------SASL 348 (481)
T ss_pred C-CCCCChHHHcCCCCCCCeEEEecchhhhhhC-C-eEE-EcCHHHHHHHHhcCCceee-----------------cccc
Confidence 2 1111111 112 24799999999999754 3 444 4555444322111112222 1121
Q ss_pred C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhH
Q 046506 165 R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEE 243 (310)
Q Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (310)
+ +.+.+..++++.+ +...++.++++++.+++++.|.+++|+.+..++.++++.+.+....- ...
T Consensus 349 Pp~~~~Aa~~aL~~l--~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~-------------~~~ 413 (481)
T PLN02822 349 PPYLASAAITAIDVL--EDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTG-------------SAK 413 (481)
T ss_pred CHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcc-------------ccc
Confidence 2 1223333455433 22367888999999999999998878888766778888888854200 000
Q ss_pred HHHHHHHHHHHHHHH-hcCcEEEEEeEE---C---CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 244 ERINEFNRELLESIN-ASGKAYMTHAVL---G---GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 244 ~~~~~~~~~l~~~l~-~~g~~~~~~~~~---~---~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.+ ....+++.++|. ++| +++.+..+ + ....+|++++ ..+|++||++++++|++++..+.
T Consensus 414 ~~-~~~~~~~~~~Ll~e~G-V~v~~~~~~~~~~~~~~~~lRi~is-~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 414 ED-LSLLEHIADRMLKEDS-VLVVVSKRSTLDKCRLPVGIRLFVS-AGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred ch-HHHHHHHHHHHHhcCC-EEEEeeCCCCcCCCCCCCcEEEEEC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 00 223457788887 556 45543311 1 1357999966 56899999999999999887754
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=147.18 Aligned_cols=242 Identities=15% Similarity=0.057 Sum_probs=150.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCH--HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHH---HHHHHhCcEE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSP--DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLC---DVAKQFGIWV 77 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~--~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~---~l~~~~g~~l 77 (310)
++..|.. ++.++.++++ .++. +.++..+.+. +.+|+++++++++|.+.|++++. ++|+++|+++
T Consensus 100 ~~~~~~~---~~~i~~~~~~--~~~~~~~~~~~~~~~~------~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ 168 (350)
T cd00609 100 ARLAGAE---VVPVPLDEEG--GFLLDLELLEAAKTPK------TKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILI 168 (350)
T ss_pred HHHCCCE---EEEEeccccc--CCccCHHHHHhhcCcc------ceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEE
Confidence 4455665 8899998754 4444 5666555433 55888888999999999866554 8999999999
Q ss_pred EeecccccccccChhhhh-hhcCCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 78 HVDAAYAGSACICPEFRH-FIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
++|+||+++......... ......+.|++..++||+++ .+.+.|+++++++...+. +.....+...
T Consensus 169 ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~-~~~~~~~~~~----------- 236 (350)
T cd00609 169 ISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLER-LKKLLPYTTS----------- 236 (350)
T ss_pred EEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHH-HHHHHHhccc-----------
Confidence 999999876643321100 01112347889999999998 456788888766444332 2111111000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.........+..+++.. .+++++..++..++++++.+.|.+.+...+..++....+.+.+.+..
T Consensus 237 ------~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~--------- 300 (350)
T cd00609 237 ------GPSTLSQAAAAAALDDG-EEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD--------- 300 (350)
T ss_pred ------CCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC---------
Confidence 00011223333444322 26788889999999999999999875544333344555556554421
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..+.+.+.+.+.|......... .+...+|++++. + ++|+++++++|++
T Consensus 301 -------------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~-~--~~~i~~~~~al~~ 350 (350)
T cd00609 301 -------------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFAT-P--EEELEEALERLAE 350 (350)
T ss_pred -------------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeC-C--HHHHHHHHHHhhC
Confidence 0124445555556433332222 256799999774 3 9999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=146.01 Aligned_cols=227 Identities=13% Similarity=0.107 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cC-CCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DG-VEGA 103 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~-~~~~ 103 (310)
|++++++.+.+... ..+.+|++.+++|++|.+.|+++|.++|++||++++||+||+.+.+. +...+.. .+ ...+
T Consensus 163 d~~~l~~~l~~~~~--~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g-~~g~g~~~~~~~~~~~ 239 (410)
T PRK13392 163 DLADLEEQLASVDP--DRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYG-ARGGGIAERDGLMDRI 239 (410)
T ss_pred CHHHHHHHHHhccC--CCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcC-CCCCchhhhccCCCCC
Confidence 45677777764321 13568899999999999999999999999999999999999855432 1111111 11 2347
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 182 (310)
|+++.+.+|+++.+. |++. .++..+........+|..... .+ ..+.++.++++.+. .
T Consensus 240 div~~tlsK~~g~~G--G~~~-~~~~~~~~l~~~~~~~~~s~~-----------------~~~~~~~a~~aaL~~~~--~ 297 (410)
T PRK13392 240 DMIQGTLAKAFGCLG--GYIA-ASADLIDFVRSFAPGFIFTTA-----------------LPPAVAAGATAAIRHLK--T 297 (410)
T ss_pred cEEEEEChHhhhccc--chhh-cCHHHHHHHHHhCcchhccCc-----------------CCHHHHHHHHHHHHHHh--c
Confidence 888899999998763 4443 445444322222222322111 11 12334445555432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cC
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA-SG 261 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g 261 (310)
.....++..++.+++.+.|+++ |+++. ++.++++.+.+.. .....++.++|.+ .|
T Consensus 298 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~----------------------~~~~~~~~~~L~~~~G 353 (410)
T PRK13392 298 SQTERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVGD----------------------PTLCKAISDRLMSEHG 353 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC----------------------HHHHHHHHHHHHHhCC
Confidence 3345577788899999999886 77765 4566776555432 1122467777764 45
Q ss_pred cEEEEEeE----ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHAV----LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~~----~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+++.+.. ..+..++|++++ ..+|++|+++++++|+++.+++
T Consensus 354 -I~v~~~~~p~~~~~~~~lRis~~-~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 354 -IYIQPINYPTVPRGTERLRITPT-PLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred -EEEeeeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 5554432 234578999966 5789999999999999887653
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=141.38 Aligned_cols=231 Identities=14% Similarity=0.055 Sum_probs=144.1
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh--hhhhhcCC-CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE--FRHFIDGV-EG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~--~~~~~~~~-~~ 102 (310)
.|++++++.+++.......+.+|+..+..+.+|.+.|+++|.++|++||+++++|++|+.+...... ... ..++ ..
T Consensus 156 ~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~-~~~~~~~ 234 (397)
T PRK06939 156 NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVE-HFGVMDR 234 (397)
T ss_pred CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHH-HcCCCCC
Confidence 5789999999764332223556777777888999999999999999999999999999644332110 011 1111 24
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
+|+++.|+||+++++. .|+++.+ +..++.......++... ++.. ..+.++.++++.+.
T Consensus 235 ~~i~~~S~sK~~~g~r-~G~v~~~-~~~~~~l~~~~~~~~~~-----------------~~~~~~~~~a~~~al~~~~-- 293 (397)
T PRK06939 235 VDIITGTLGKALGGAS-GGYTAGR-KEVIDWLRQRSRPYLFS-----------------NSLAPAIVAASIKVLELLE-- 293 (397)
T ss_pred CcEEEEECHHHhCccC-ceEEEeC-HHHHHHHHHhCcccccc-----------------CCCCHHHHHHHHHHHHHHh--
Confidence 7899999999997664 4666654 43443321111111111 1101 11233344454432
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
..+++.++..++.+++.+.|.++ ++++. ++..+++.+.+.+ .....++.+.|.++|
T Consensus 294 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~L~~~g 349 (397)
T PRK06939 294 ESDELRDRLWENARYFREGMTAA-GFTLG-PGEHPIIPVMLGD----------------------AKLAQEFADRLLEEG 349 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEECC----------------------HHHHHHHHHHHHHCC
Confidence 23567788888999999999876 66654 3344444443322 111246778888887
Q ss_pred cEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.... +..+ .+...+|++++ .++++++|+++++.|+++++++
T Consensus 350 I~v~-~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 350 VYVI-GFSFPVVPKGQARIRTQMS-AAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred ceEe-eeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 5433 3322 23468999966 4688999999999999887653
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=144.52 Aligned_cols=247 Identities=13% Similarity=0.044 Sum_probs=152.5
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcC-------CCcEEEEEeccCCcccccCChHHHHHHHHHhCcE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAG-------LIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIW 76 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~-------~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~ 76 (310)
+..|+. ++.++.+ |+++|++.|++....+ ....+|++....++.|.+.++++|+++|++||++
T Consensus 203 ~~~Ga~---v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~ 272 (489)
T PLN02483 203 RGSGAT---IRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAY 272 (489)
T ss_pred HHcCCe---EEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCE
Confidence 445665 7777753 4578888776532110 1123566667779999999999999999999999
Q ss_pred EEeecccccccccChhhhhh--hcC--CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccc
Q 046506 77 VHVDAAYAGSACICPEFRHF--IDG--VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~--~~~--~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
+++|+||+.+... +..++. ..+ ..++|+++.+++|+++++ | |++ +.+++.+.......+.+.....
T Consensus 273 livDEa~s~g~~G-~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~-G-G~i-~~~~~li~~l~~~~~~~~~~~~------ 342 (489)
T PLN02483 273 VYLDEAHSIGAVG-KTGRGVCELLGVDPADVDIMMGTFTKSFGSC-G-GYI-AGSKELIQYLKRTCPAHLYATS------ 342 (489)
T ss_pred EEEECcCccCccC-CCCCchHHhcCCCcccCcEEEEecchhcccC-c-eEE-EcCHHHHHHHHHhCccccccCC------
Confidence 9999999755431 111110 011 135799999999998754 3 554 4555444332222222211110
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcch
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYG----VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVM 228 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~ 228 (310)
.-+..+..+.++++.+. .+...++.++..++.+++++.|+++ |+.+..+...+++.+.+...
T Consensus 343 ----------~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~--- 408 (489)
T PLN02483 343 ----------MSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNP--- 408 (489)
T ss_pred ----------cCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCH---
Confidence 00112222334454331 1234566788999999999999987 88877555555666555431
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV---LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
....++.+.|.++|........ ....+.+|++++ ..+|+|||++++++|+++...+
T Consensus 409 -------------------~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~is-a~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 409 -------------------AKIPAFSRECLKQNVAVVVVGFPATPLLLARARICIS-ASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred -------------------HHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 1113566777777754443211 223478999976 4688999999999999988765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=157.36 Aligned_cols=210 Identities=16% Similarity=0.123 Sum_probs=140.1
Q ss_pred EEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccc-----cccccceE
Q 046506 47 FLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKW-----FFTTLDCC 121 (310)
Q Consensus 47 ~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~-----l~~p~g~g 121 (310)
..++.+.++.+|.+.|+++|+++||++|++++||+.+.+..+.-+- .. .++|+++.++||| +++| ++|
T Consensus 208 ~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~p-----ge-~GaDi~vgs~qkfg~P~g~GGP-~aG 280 (954)
T PRK05367 208 FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPP-----GE-MGADIAVGSAQRFGVPMGFGGP-HAA 280 (954)
T ss_pred EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCCh-----hh-cCCCEEEeeCcccCCCCCCCCC-CEE
Confidence 4556677888999999999999999999999999976433332221 11 2699999999999 5556 599
Q ss_pred EEEEeCchhHHhhhccCCccccccccccccccCCC--------CceeccCCC-cc-hHHHHH-----HHHHhCHHHHHHH
Q 046506 122 CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK--------DWQITLSRR-FR-SLKLWF-----VLRNYGVANLRHF 186 (310)
Q Consensus 122 ~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~--------~~~~~~~~~-~~-~~~~~~-----~l~~~~~~~~~~~ 186 (310)
++++++. . .+.+ |+.+-+...+..+...++ ....+.+.+ .. ..++.+ .+..+|..|++++
T Consensus 281 flavr~~-~-~r~l---pgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~I 355 (954)
T PRK05367 281 YFAVRDA-Y-KRSM---PGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAI 355 (954)
T ss_pred EEEECHH-H-HhhC---CCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999865 2 2332 222222211111111111 011121111 11 111222 2355789999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE
Q 046506 187 LRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMT 266 (310)
Q Consensus 187 ~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 266 (310)
.++...++.+++++|.+ +|+++..++.++++++..... ..++.+++.+.|... .
T Consensus 356 a~~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~~~------------------------~~~i~~~l~~~gi~~-~ 409 (954)
T PRK05367 356 ARRVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVGGD------------------------AAAVLARALAAGINL-R 409 (954)
T ss_pred HHHHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCCCC------------------------HHHHHHHHHHCCcee-c
Confidence 99999999999999987 599988776778888875321 146778888887533 1
Q ss_pred EeEECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 267 HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 267 ~~~~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
. .....+|+|++ ..+|++||++++++|.
T Consensus 410 ~---~~~~~l~is~~-e~~t~~did~l~~~l~ 437 (954)
T PRK05367 410 R---VDDDHVGISLD-ETTTREDLAALLAVFG 437 (954)
T ss_pred c---ccCCEEEEEec-ccCCHHHHHHHHHHHc
Confidence 1 12346999966 6899999999999997
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-16 Score=130.36 Aligned_cols=233 Identities=12% Similarity=0.026 Sum_probs=155.9
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh--hhhhhcCCC
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE--FRHFIDGVE 101 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~--~~~~~~~~~ 101 (310)
+++|+-+||..+.+..+. +-.+|+.....+|.|.+.|+++|++++++||++|++|.+|+.+++.-.. ..+...-..
T Consensus 175 ~h~dv~~l~~~l~~a~k~--r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~ 252 (417)
T KOG1359|consen 175 RHVDVFDLEHCLISACKM--RLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMG 252 (417)
T ss_pred ccchhHHHHHHHHHhhhh--eEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCC
Confidence 378888999888765442 2347777888899999999999999999999999999999877653321 111112235
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhh-ccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSL-STNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
.+|.+..+..|.+++.. |.+...+..++ ..+ +..-+|+++..- +.+--.-+++++..+
T Consensus 253 ~vdiinsTLgKAlGga~--GGyttgp~~li-~llrqr~RpylFSnsl-------------ppavV~~a~ka~dll----- 311 (417)
T KOG1359|consen 253 DVDIINSTLGKALGGAS--GGYTTGPKPLI-SLLRQRSRPYLFSNSL-------------PPAVVGMAAKAYDLL----- 311 (417)
T ss_pred cceehhhhhhhhhcCCC--CCCccCChhHH-HHHHhcCCceeecCCC-------------ChhhhhhhHHHHHHH-----
Confidence 69999999999998542 34444555443 333 444567765531 111001122222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
-.-.....+...+.+++++.+.. .||.+.+.. -+|..+.+.. .+++....+.|.+.
T Consensus 312 m~s~~~i~~~~a~~qrfr~~me~-aGftIsg~~-hPI~pv~lGd----------------------a~lA~~~ad~lLk~ 367 (417)
T KOG1359|consen 312 MVSSKEIQSRQANTQRFREFMEA-AGFTISGAS-HPICPVMLGD----------------------ARLASKMADELLKR 367 (417)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHh-cCceecCCC-CCccceeccc----------------------HHHHHHHHHHHHhc
Confidence 12234455566788999999986 499987542 3444444443 45666778888889
Q ss_pred CcEEEE---EeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMT---HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 261 g~~~~~---~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|.+.+. |.++.+...||+.++. ..|+||||++++++.+++..+
T Consensus 368 Gi~Vigfs~PvVP~gkariRVqiSA-aHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 368 GIYVIGFSYPVVPKGKARIRVQISA-AHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred CceEEeecCCcCCCCceEEEEEEeh-hcCHHHHHHHHHHHHHHHHhh
Confidence 865333 5566789999999775 578999999999999988654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=141.05 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=139.9
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccCh--hhhhhhcCC--C
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHFIDGV--E 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~--~~~~~~~~~--~ 101 (310)
.|++++++++++... .+.++++.+..|.+|.+.|+++|+++|++||+++++|++|+.+.+... .... ...+ .
T Consensus 153 ~d~~~l~~~i~~~~~---~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~-~~~~~~~ 228 (385)
T PRK05958 153 NDVDALEALLAKWRA---GRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAA-EAGLAGE 228 (385)
T ss_pred CCHHHHHHHHHhccC---CCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHH-hhCCCCC
Confidence 378999999975311 134666667788899999999999999999999999999976543211 1111 0111 1
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 180 (310)
.-+++..+.||+++. .| |+++ .+++..+........+.. .++.. ....++.++++.+..
T Consensus 229 ~~~i~~~s~sK~~~~-~G-g~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~aa~~aal~~~~~ 288 (385)
T PRK05958 229 PDVILVGTLGKALGS-SG-AAVL-GSETLIDYLINRARPFIF-----------------TTALPPAQAAAARAALRILRR 288 (385)
T ss_pred CceEEEEechhhccc-CC-cEEE-cCHHHHHHHHHhCcccee-----------------cCCCCHHHHHHHHHHHHHHhc
Confidence 234678999999975 34 5554 445433222111111211 11111 122334455554422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
. +++.++..++.+++.+.|+++ ++++. ++..+++.+.++. .....++.+.|.++
T Consensus 289 ~--~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~l~~~ 342 (385)
T PRK05958 289 E--PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGD----------------------NERALALAAALQEQ 342 (385)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC----------------------HHHHHHHHHHHHHC
Confidence 2 567888899999999999876 67654 4566777776643 11234677888777
Q ss_pred CcEEEEEe-E---ECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHA-V---LGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 261 g~~~~~~~-~---~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
|. .+.+. . ..+..++|+|++ .+++++|++.++++|+++
T Consensus 343 gI-~v~~~~~~~~~~~~~~lRis~~-~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 343 GF-WVGAIRPPTVPAGTSRLRITLT-AAHTEADIDRLLEALAEA 384 (385)
T ss_pred Cc-eEecccCCCCCCCCceEEEEec-CCCCHHHHHHHHHHHHhc
Confidence 65 44321 1 123468999965 578999999999999875
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=140.55 Aligned_cols=229 Identities=13% Similarity=0.078 Sum_probs=144.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCC-CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGV-EG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~ 102 (310)
.|++++++.+...+. ..+.+|++.+.++++|.+.|+++|.++|++||++++||++|+.+.+. +...+.. .++ ..
T Consensus 161 ~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g-~~G~g~~~~~~~~~~ 237 (406)
T PRK13393 161 NDPADLERKLSDLDP--HRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYG-PRGGGIAEREGLADR 237 (406)
T ss_pred CCHHHHHHHHHhccC--CCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccC-CCCCchhhhcCCCCC
Confidence 467889888864321 12457888999999999999999999999999999999999855431 1111111 111 23
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
.|++..+..|.++.+. |++ +.++...........+|.. ..+.+ ..+.++.++++.+...
T Consensus 238 ~~i~~~tlsKa~g~~G--G~~-~~~~~~~~~l~~~~~~~~~-----------------t~~~~p~~~aa~~aaL~~~~~~ 297 (406)
T PRK13393 238 LTIIEGTLAKAFGVMG--GYI-TGSAALCDFIRSFASGFIF-----------------TTSLPPAVAAGALASVRHLKAS 297 (406)
T ss_pred CeEEEEeCchhhcccC--cee-eCCHHHHHHHHHhCcCcee-----------------cCccCHHHHHHHHHHHHHHhhC
Confidence 5788789999998653 444 4445433222111112221 11111 1234455666654322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
. ...++..++.+++++.|+++ +++++ ++..+++.+.+.. .....++.+.|.++.
T Consensus 298 ~--~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~v~~~~----------------------~~~~~~l~~~L~~~~ 351 (406)
T PRK13393 298 S--AERERHQDRVARLRARLDKA-GIPHL-PNPSHIVPVMVGD----------------------PVLCKQISDELLDRY 351 (406)
T ss_pred H--HHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCeEEEEeCC----------------------HHHHHHHHHHHHHhC
Confidence 2 23456678899999999875 67655 4456666665432 112346777787752
Q ss_pred cEEEEEe----EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHA----VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~----~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+++.+. +..+...+|+|++ .++|++|+++++++|+++..++
T Consensus 352 Gi~v~~~~~p~~p~g~~~iRis~~-~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 352 GIYVQPINYPTVPRGTERLRITPS-PLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CEEEEeECCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 3454432 2335578999966 6899999999999999987654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=142.16 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
|+++++++|+++ +.+|++.+.+|++|.+.|+++|+++||++|++++||++|+.+....+. . .++|++
T Consensus 144 d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl------~-~GaDiv 210 (436)
T PRK07812 144 DLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPL------E-HGADIV 210 (436)
T ss_pred CHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCch------h-cCCCEE
Confidence 889999998765 348999999999999999999999999999999999999866543221 1 269999
Q ss_pred eeeccccccccc-ceEEEEEeCchh-HHhh-----hccCCccccccccc--ccccc-CCC-CceeccCCCcchHHHHHHH
Q 046506 107 SLNAHKWFFTTL-DCCCLWVKDPSD-LVNS-----LSTNPEYLKNKATE--SKQVV-DYK-DWQITLSRRFRSLKLWFVL 175 (310)
Q Consensus 107 ~~~~hK~l~~p~-g~g~l~v~~~~~-~~~~-----~~~~~~y~~~~~~~--~~~~~-~~~-~~~~~~~~~~~~~~~~~~l 175 (310)
+.|+||+++++. ..|++++..... .... ...+++|......+ ..... ..+ .+....|-......+|..+
T Consensus 211 v~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~ 290 (436)
T PRK07812 211 VHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIA 290 (436)
T ss_pred EEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 999999998763 266666644321 1000 01112211100000 00000 000 0001112223344555443
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC------------------CceEEEEEEcC
Q 046506 176 RNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR------------------HFAVVCFRVSP 224 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------------------~~~~v~~~~~~ 224 (310)
.|...+..++++..++|..+.+.|++.|++.-+.-| ..++++|.+.+
T Consensus 291 --rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~ 355 (436)
T PRK07812 291 --QGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAG 355 (436)
T ss_pred --cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 477889999999999999999999999988543211 14588888864
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=140.82 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=112.7
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++.+ |++++++++++++ .+|++.+++|++|.+.|+++|+++|+++|++++||++++
T Consensus 115 ~~G~~---v~~v~~~-------d~~~l~~~l~~~t------klV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 115 RFGIE---HTFVDMT-------NLEEVAQNIKPNT------KLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred HcCCE---EEEECCC-------CHHHHHHhcCCCc------eEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 35665 7777653 5789999887653 488899999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+....+. . .++|+++.|+||+++++.| .|++++++++...+.......+
T Consensus 179 ~~~~~~~~------~-~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~--------------------- 230 (390)
T PRK08064 179 TPLLQKPL------D-LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSF--------------------- 230 (390)
T ss_pred cccccCch------h-hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhc---------------------
Confidence 65432221 1 1589999999999998877 4777777665443321111000
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE 208 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~ 208 (310)
+....+...|..+ .+...+..++++..+++..+.+.|++.|.+.
T Consensus 231 g~~~~~~~a~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~ 274 (390)
T PRK08064 231 GAVLGVQDCWLVL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQ 274 (390)
T ss_pred CCCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 0011222334333 3555678899999999999999999888763
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-16 Score=141.62 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=113.0
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. +++++. .|+++++++|+++ +.+|++++++|++|.+.|+++|+++||++|++++||++|+.
T Consensus 109 ~G~~---v~~vd~-------~d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 109 SGVV---VVHVDT-------TDLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred cCcE---EEEeCC-------CCHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 4555 666655 2689999999754 45899999999999999999999999999999999999976
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+....+. .. ++|++++|+||++++|.+ .|+++++++....+.... ... .|
T Consensus 173 ~~~~~~l------~~-g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~----~~~-----------------~G 224 (378)
T TIGR01329 173 PLLCNPL------EL-GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFL----QNS-----------------TG 224 (378)
T ss_pred cccCChh------hc-CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHH----HHh-----------------cC
Confidence 6432221 11 589999999999999877 888888776543322111 000 01
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE 208 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~ 208 (310)
........|.. ..+...+..++++..+++..+.+.|++.|.+.
T Consensus 225 ~~~~~~~a~l~--~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~ 267 (378)
T TIGR01329 225 SGLAPFDCWLL--LRGIKTLAIRIEKQQENARAIAMFLSTHPRVK 267 (378)
T ss_pred CcCCHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 01112222322 33556788999999999999999999888773
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-15 Score=135.99 Aligned_cols=223 Identities=10% Similarity=0.021 Sum_probs=140.1
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhh-hhhcCC--CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR-HFIDGV--EG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~-~~~~~~--~~ 102 (310)
+|+++|++.+++.+. ..+.++++.+..+++|.+.|+++|.++|+++|+++++|++|+.+.+...... ....++ ..
T Consensus 130 ~d~~~l~~~~~~~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 207 (360)
T TIGR00858 130 NDVEHLERLLEKNRG--ERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEP 207 (360)
T ss_pred CCHHHHHHHHHHccc--CCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccC
Confidence 578999999975421 1245777777888999999999999999999999999999975543221000 001111 24
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
.|++..+++|+++.+ | |+++. ++............+. ..++.. +..+++.++++.+.
T Consensus 208 ~~i~i~s~sK~~~~~-g-G~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~a~~~al~~~~-- 265 (360)
T TIGR00858 208 VDIQVGTLSKALGSY-G-AYVAG-SQALIDYLINRARTLI-----------------FSTALPPAVAAAALAALELIQ-- 265 (360)
T ss_pred CcEEEEechhhhhcc-C-cEEEc-CHHHHHHHHHhCccce-----------------ecCCCCHHHHHHHHHHHHHHh--
Confidence 688999999998764 4 65544 4444322211111111 111111 12233344454332
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
..+++.++..++.+++.+.|.++ ++++. ++..+++.+.+... ....++.+.|.++|
T Consensus 266 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~g 321 (360)
T TIGR00858 266 EEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDN----------------------ASALALAEELQQQG 321 (360)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCH----------------------HHHHHHHHHHHHCC
Confidence 23567888999999999999886 67665 45666776666431 11246777787776
Q ss_pred cEEEEEe-E---ECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 262 KAYMTHA-V---LGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 262 ~~~~~~~-~---~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
. ++.+. . ..+...+|+|++ .+++++|++.++++|+
T Consensus 322 I-~v~~~~~~~~~~~~~~iRis~~-~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 322 I-FVGAIRPPTVPAGTSRLRLTLS-AAHTPGDIDRLAEALK 360 (360)
T ss_pred e-eEeeeCCCCCCCCCceEEEEEc-CCCCHHHHHHHHHhhC
Confidence 4 44331 1 123468999966 5789999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=138.27 Aligned_cols=250 Identities=15% Similarity=0.082 Sum_probs=153.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++++.+.+|++++++++++. +.++++++.+|.+|.+.+ +++|+++|++||+++++
T Consensus 132 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 132 VKLAGGV---PVFVPTGEENGFKLTVEQLEAAITPK------TKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred HHHcCCE---EEEEecCcccCCcCCHHHHHHhhCcc------ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4456776 99999986555789999999998653 347778888999999865 88899999999999999
Q ss_pred ecccccccccChh---hhhhhcCCCCCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPE---FRHFIDGVEGADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|.+++........ ......+...-+++..+..|+++.|. .+|+++ .++..+.........+..
T Consensus 203 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~-~~~~~~~~~~~~~~~~~~------------ 269 (393)
T PRK05764 203 DEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAA-GPKELIKAMSKLQSHSTS------------ 269 (393)
T ss_pred eccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEe-cCHHHHHHHHHHHhhccc------------
Confidence 9998654332111 11111122235677788999987552 267666 444443322111100000
Q ss_pred CCceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
....+..+++.+.+ ..+.+++..++..++.+.+.+.|++++++.+..+.....+.+.+.+...
T Consensus 270 ---------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~------ 334 (393)
T PRK05764 270 ---------NPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------ 334 (393)
T ss_pred ---------CCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc------
Confidence 01122233333333 2355667777888889999999998888887643333344444443100
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.. ..-..++.+.+.+ .|....++......+++|+|+. .++++++.++++|.+++..
T Consensus 335 --------~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~---~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 335 --------KS---ITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYA---TSLEDLEEGLERIERFLES 391 (393)
T ss_pred --------cc---cCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 00 0001355566554 4544333333333578999965 3589999999999988764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=140.66 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=114.8
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++ ++ .|+++++++|++++ .+|++.+.+|.+|.+.||++|+++||++|++++||++|+
T Consensus 131 ~~Gi~---v~~vd-~~-----~d~e~l~~~l~~~t------k~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 131 RLGIE---VTFVE-NP-----DDPESWQAAVQPNT------KAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred hcCeE---EEEEC-CC-----CCHHHHHHhCCccC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCc
Confidence 35665 77777 32 27899999998764 367778888999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchh-HHhh---hccCCccccccccc-cccccCCC--
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSD-LVNS---LSTNPEYLKNKATE-SKQVVDYK-- 156 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~-~~~~---~~~~~~y~~~~~~~-~~~~~~~~-- 156 (310)
.+....+. . .++|++++|+||+++++ .+.|++++.+... .... ....+......... .....+..
T Consensus 196 ~g~~~~p~----~---~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (437)
T PRK05613 196 TAALVRPL----E---LGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAP 268 (437)
T ss_pred cccccChH----H---hCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchH
Confidence 66543221 1 25999999999999876 3456666643321 0000 00000000000000 00000000
Q ss_pred --------CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE
Q 046506 157 --------DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEV 209 (310)
Q Consensus 157 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v 209 (310)
.+....|-...+..+|..+ .|...+..++++.+++|..+.+.|++.|++.-
T Consensus 269 ~~~~~~~~~~~~~~G~~~~p~~a~l~~--rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~ 327 (437)
T PRK05613 269 AFGLKARAGLLRDTGATLSPFNAWVTA--QGLDTLSLRLERHNENAIKVAEFLNNHEKVAK 327 (437)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence 0011112223344555444 46788999999999999999999999998853
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=134.45 Aligned_cols=261 Identities=17% Similarity=0.161 Sum_probs=163.2
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc-CChHHHHHHHHHhCcEEEee
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-DTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~pl~~I~~l~~~~g~~l~vD 80 (310)
+|++.|.. |+.|+++++| .+|+++|++++.+++. .+ +.+..|..|.. .+|.+|+++.|++|..|+.|
T Consensus 173 SAam~G~~---VV~V~~~~~G--~VDlddLk~k~~~~~A------al-MiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~D 240 (496)
T COG1003 173 SAAMAGFK---VVVVKCDENG--NVDLDDLRAKAEDNLA------AL-MITNPSTLGVFEEDIREICEIVHEAGGQVYYD 240 (496)
T ss_pred hHhhcCce---EEEEecCCCC--CccHHHHHHHhcccee------EE-EeccCcccccchhhHHHHHHHHHHcCCEEEec
Confidence 57899998 9999999865 9999999999986642 34 44455557875 56999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceE-----EEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCC-----CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g-----~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
||- ..++.... + .+.-++|++-++.||+|+.|-|.| -+.|+.. +..+++....| .....+....+.
T Consensus 241 GAN-lNA~vG~~-r---PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~pfLP~p~~~--~~~~~y~~~~~~ 311 (496)
T COG1003 241 GAN-LNAIVGLA-R---PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LAPFLPGPVVY--HDVGEYRLDYDG 311 (496)
T ss_pred Ccc-hhhhhccc-c---ccccccceEEeecccccccCCCCCCCCCCceehHhh--ccccCCCCccc--CCCccccccCCC
Confidence 996 22222211 0 122369999999999999876554 4555422 32332221001 011000000000
Q ss_pred CCceeccCCC-c---ch-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcc
Q 046506 156 KDWQITLSRR-F---RS-LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAV 227 (310)
Q Consensus 156 ~~~~~~~~~~-~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~ 227 (310)
. ..+.-+.. + .. .-.|+.+..+|.+|+++.-+...-+|.|++.+|+. .++++-.+. ..-+.+...+..
T Consensus 312 ~-~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~- 387 (496)
T COG1003 312 K-KSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLK- 387 (496)
T ss_pred C-ccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhH-
Confidence 0 11111111 1 22 34688899999999999999999999999999986 566532222 333333333210
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
....-...++.++|...|. +.....+. -.+.+=|-++- --+.+++|++++++.++..+..
T Consensus 388 ----------------~~~Gv~~~DvAKrLlD~Gf-HaPT~~FPliV~~tLMIEPTE-sEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 388 ----------------KETGVRALDVAKRLLDYGF-HAPTMYFPLIVAGTLMIEPTE-SESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred ----------------hhcCCcHHHHHHHHHhcCC-CCCcccCccccccceeecCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 0112223688999999884 32221121 24555555553 3567999999999999987754
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=151.12 Aligned_cols=210 Identities=12% Similarity=0.028 Sum_probs=143.1
Q ss_pred EEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeeccccc-----ccccceE
Q 046506 47 FLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWF-----FTTLDCC 121 (310)
Q Consensus 47 ~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l-----~~p~g~g 121 (310)
..++++.++.+|.+.|+++|+++||++|++++| +|+..+........ .+ +||+++.++|||+ ++|. +|
T Consensus 236 ~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pg----e~-GADi~vgsgqKwg~P~G~GGP~-aG 308 (993)
T PLN02414 236 CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPG----EW-GADIVVGSAQRFGVPMGYGGPH-AA 308 (993)
T ss_pred EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHh----hc-cCcEEEECCCccccCCCCCCCC-ee
Confidence 344577888899999999999999999999999 88887776663211 22 6999999999998 4444 89
Q ss_pred EEEEeCchhHHhhhccCCccccccccccccccCCC---Cce-----eccCCC-c-chHHHHHHH-----HHhCHHHHHHH
Q 046506 122 CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK---DWQ-----ITLSRR-F-RSLKLWFVL-----RNYGVANLRHF 186 (310)
Q Consensus 122 ~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~-----~~~~~~-~-~~~~~~~~l-----~~~~~~~~~~~ 186 (310)
+++++++. .+. .|+.+-+.+.+..+.+.+. ... ++.+.+ . ...++++++ ..+|..|++++
T Consensus 309 flavr~~~--~r~---~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~I 383 (993)
T PLN02414 309 FLATSQEY--KRL---MPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 383 (993)
T ss_pred EEEECHHH--Hhh---CCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHH
Confidence 99998763 232 2322222222211111110 011 111111 1 112333333 34578899999
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE
Q 046506 187 LRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMT 266 (310)
Q Consensus 187 ~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 266 (310)
.+++..++.+++++|.+ .|+++..++.+++++|.+... .++.++|.++|. .+.
T Consensus 384 a~ri~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~~~-------------------------~~v~~~L~~~gI-~l~ 436 (993)
T PLN02414 384 AQRVHGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCSDA-------------------------DAIADAAAKVGI-NLR 436 (993)
T ss_pred HHHHHHHHHHHHHHHhh-cCCccCCCCCcCeEEEecCCH-------------------------HHHHHHHHHCCC-eeE
Confidence 99999999999999987 489988777788898887421 467778878875 322
Q ss_pred EeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 267 HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 267 ~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.. ..+.+|+|++ .+||++|||+|+++|..
T Consensus 437 ~~---~~~~lrvs~~-e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 437 VV---DANTVTVSFD-ETTTLEDVDKLFKVFAG 465 (993)
T ss_pred Ee---cCCeEEEEee-ccCCHHHHHHHHHHHcc
Confidence 11 1346999966 78999999999999974
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=139.89 Aligned_cols=180 Identities=15% Similarity=0.143 Sum_probs=114.7
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. +++++++ |+++|+++|++++ .+|++++.+|++|.+.|+++|+++||++|++++||++|+.
T Consensus 127 ~Gi~---v~~vd~~-------d~~~l~~~i~~~T------klV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~ 190 (433)
T PRK08134 127 FGIE---TTFVKPG-------DIDGWRAAIRPNT------RLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTT 190 (433)
T ss_pred CCeE---EEEECCC-------CHHHHHHhcCCCC------eEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcc
Confidence 4555 6677653 6899999998764 4888999999999999999999999999999999999987
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeCchh-HHh--hh-ccCCccccccccccccccCCCCc--
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKDPSD-LVN--SL-STNPEYLKNKATESKQVVDYKDW-- 158 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~~~~-~~~--~~-~~~~~y~~~~~~~~~~~~~~~~~-- 158 (310)
+....+. . .++|++++|+|||++++.. .|.+++..... +.. .+ ...+++....+...........+
T Consensus 191 ~~~~~pl------~-~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 263 (433)
T PRK08134 191 PYLLRPF------E-HGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLL 263 (433)
T ss_pred cccCCch------h-cCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHH
Confidence 7654331 1 2699999999999987643 55665542210 000 00 00111111100000000000000
Q ss_pred ------eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 159 ------QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 159 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
....+.......+|.. ..|...+..++++..+++..+.+.|+++|.+.-+
T Consensus 264 ~~~~~~~~~~G~~ls~~~A~l~--~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V 319 (433)
T PRK08134 264 RARREGLRDFGACLSPMNAWQL--LQGIETLPLRMERHVANTRKVVAFLASHPAVARV 319 (433)
T ss_pred HHHHHHHHhcCCCCCHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 0011111233344433 3466789999999999999999999999988543
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=140.24 Aligned_cols=244 Identities=14% Similarity=0.151 Sum_probs=149.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|+++++++.+|++++++++++. +.++++++++|++|.+.| +++|+++|+++++++++
T Consensus 134 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 134 AKIAEAK---PIRIPLREENEFQPDPDELLELITKR------TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred HHHcCCE---EEEEecCCccCCCCCHHHHHHhcccc------cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 4456776 99999987555689999999999764 347778888999999999 88999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
|++++...................++++.|.+|.++.| | +|+++.. +..+....... .+....
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-GlRiG~~~~~-~~~~~~~~~~~-~~~~~~------------ 269 (391)
T PRK08361 205 DEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT-GWRLGFVIAP-EQVIKDMIKLH-AYIIGN------------ 269 (391)
T ss_pred EcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc-HhhhhhhccC-HHHHHHHHHHH-hhhccC------------
Confidence 99986544322111111111112467889999998765 5 7887764 43443321111 111000
Q ss_pred ceeccCCCcchHHHHHHHHHhC--H--HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRNYG--V--ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLK 232 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~ 232 (310)
...+...++...+. . ..+++..++..++.+.+.+.|++++++.+. +|+.+. +...+.+...
T Consensus 270 --------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~----- 335 (391)
T PRK08361 270 --------VASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVF-EPKGAFYVFANIDETGM----- 335 (391)
T ss_pred --------CChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeec-CCCEEEEEEEECCCCCC-----
Confidence 01111122222221 1 346677777788888899999888888765 445443 4344542110
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.+.+ .|.....+.... +.+++|+++.. ++++++..++.|++.+++
T Consensus 336 ---------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 336 ---------S-------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT---SKEKLIEAMERMEKALEE 390 (391)
T ss_pred ---------C-------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHHHHhc
Confidence 0 1345555654 454333322222 35789999662 567888888888776643
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-15 Score=136.96 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=117.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|+++ +.+|.+.+++|++|.+.|+++|+++|+++|++++||.+++.+....+. . .++|+
T Consensus 126 ~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl------~-~GaDi 192 (388)
T PRK08861 126 SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL------E-LGADF 192 (388)
T ss_pred CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc------c-cCCCE
Confidence 5789999998764 458888999999999999999999999999999999999766443221 1 26999
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|+|||+++|.+ .|++..++++..++..... .++ |........|..+ .|...+
T Consensus 193 vv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~-~~~--------------------G~~~~p~~a~l~~--rgl~Tl 249 (388)
T PRK08861 193 VIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG-NCI--------------------GATGTPFDSYMTL--RGIRTL 249 (388)
T ss_pred EEeecceeccCCCcceeEEEEecHHHHHHHHHHHH-hcc--------------------CCCCChHHHHHHH--hcCCCH
Confidence 99999999999865 4555555554332221110 011 1112334455444 467889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
.-++++.+++|..+.+.|++.|.+.-+. | | ..++++|.+.+
T Consensus 250 ~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 250 GARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 9999999999999999999999885332 2 1 24588898864
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=134.81 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=143.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhh--hhhhcCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEF--RHFIDGVEG 102 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~--~~~~~~~~~ 102 (310)
.+|++++++.|.+... .++.++++.+..+.+|.+.|+++|+++|++||+++++|++|+.+.+..... .....--.+
T Consensus 146 ~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
T TIGR01825 146 HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDK 223 (385)
T ss_pred CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcC
Confidence 5889999999876432 124577778888999999999999999999999999999997654431110 000000124
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++..+.+|+++.+. |+++ .++..++........|..... +.+....++.++++.+..
T Consensus 224 ~~i~~~s~sK~~~~~g--G~~~-~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~a~~~al~~~~~-- 282 (385)
T TIGR01825 224 VDIQVGTLSKAIGVVG--GYAA-GHKELIEYLKNRARPFLFSTA----------------QPPAVVAALAAAVDELQR-- 282 (385)
T ss_pred CcEEEEeccHHhhcCC--CEEe-cCHHHHHHHHHhCccccccCC----------------CCHHHHHHHHHHHHHHhc--
Confidence 7888999999997543 5554 444443322111111211100 001122344445543311
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
..+..++..++.+++.+.|.++ ++++. .+..+++.+.+.+. ....++.+.|.++|.
T Consensus 283 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~L~~~gi 338 (385)
T TIGR01825 283 SPELMERLWDNTRFFKAGLGKL-GYDTG-GSETPITPVVIGDE----------------------KAAQEFSRRLFDEGI 338 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEECCH----------------------HHHHHHHHHHHHCCc
Confidence 2346677778899999999886 77765 34455665554321 112467777877765
Q ss_pred EEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 263 AYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 263 ~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+.+..+ .+...+|++++ .+++++|+++++++|+++++.
T Consensus 339 -~v~~~~~~~~~~~~~~iRi~~~-~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 339 -FAQSIVFPTVPRGTARIRNIPT-AEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred -EEcccCCCCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHHHHHH
Confidence 4432211 24478999955 679999999999999998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-15 Score=136.81 Aligned_cols=262 Identities=14% Similarity=0.120 Sum_probs=150.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. +++++++++ ++.+|+++++++|++.... .+.+|+.++ .+|...|+++|+++|++||+++++|++
T Consensus 86 ~~~~G~~---~~~~~~~~~-~~~~d~~~l~~~i~~~~~~--~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a 156 (380)
T TIGR03588 86 ALYCGAK---VDFVDIDPD-TGNIDEDALEKKLAAAKGK--LPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDAS 156 (380)
T ss_pred HHHcCCE---EEEEecCCC-cCCcCHHHHHHHhhcccCC--CceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 3456776 999999864 4689999999999732000 133555443 479999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecc--cccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+.+.. .+. .. .......|+.++|+| |++..+ ..|+++..++....+..... ........ ....+....+.
T Consensus 157 ~a~g~~-~~~-~~-~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~ 230 (380)
T TIGR03588 157 HALGAE-YGG-KP-VGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPL--LFEKQDEGPWY 230 (380)
T ss_pred CcccCc-cCC-Ee-CCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcc--cccccccCcce
Confidence 987754 221 11 111113599999988 898766 44555556664433221100 00000000 00000000001
Q ss_pred ec---cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----ceEEEEEEcCCcchhhh
Q 046506 160 IT---LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----FAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 160 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~~~~~~~~~~~~~ 231 (310)
++ .|..+..-.+.+++.......++++.++..++++++.+.|.++|++.+..++. .....+.+....
T Consensus 231 ~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 305 (380)
T TIGR03588 231 YEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF----- 305 (380)
T ss_pred eeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC-----
Confidence 11 11112222222333222345688999999999999999999998877554321 112223332210
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEE---EEeE--------EC----------CEeEEEEEccCCCCCHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYM---THAV--------LG----------GIYAIRFAAGATLTEERHV 290 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~--------~~----------~~~~iRis~~~~~~t~edi 290 (310)
.....++.+.|.++|+... .+.. .. ....+++. .++..|++||
T Consensus 306 ---------------~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP-~~~~l~~~dv 369 (380)
T TIGR03588 306 ---------------GCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLP-LHPALTLEQQ 369 (380)
T ss_pred ---------------CCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcC-CCCCCCHHHH
Confidence 0011456666766664211 1100 00 12578888 4578899999
Q ss_pred HHHHHHHHHH
Q 046506 291 MVAWTVVQEH 300 (310)
Q Consensus 291 ~~li~~l~~~ 300 (310)
++++++|+++
T Consensus 370 ~~i~~~l~~~ 379 (380)
T TIGR03588 370 QRVVETLRKV 379 (380)
T ss_pred HHHHHHHHHh
Confidence 9999999876
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-15 Score=137.10 Aligned_cols=164 Identities=17% Similarity=0.234 Sum_probs=116.1
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
+|+++++++|+++ +.+|++.+++|++|.+.|+++|+++|+++|++++||++|+.+....+. .. ++|+
T Consensus 138 ~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~------~~-gaDi 204 (398)
T PRK07504 138 LDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL------EL-GAHI 204 (398)
T ss_pred CCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch------hh-CCCE
Confidence 7899999999765 348999999999999999999999999999999999999765432221 11 5899
Q ss_pred eeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHH
Q 046506 106 FSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLR 184 (310)
Q Consensus 106 ~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (310)
++.|+||+++++. ..|++++.+++.+.+.+. .+.. ..+.......+|.+++ +...+.
T Consensus 205 vv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~-----------------~~g~~~s~~~A~~~l~--~L~tl~ 262 (398)
T PRK07504 205 VVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFR-----------------HTGPSLSPFNAWTLLK--GLETLP 262 (398)
T ss_pred EEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHH-----------------HhCCCCCHHHHHHHHh--ccchHH
Confidence 9999999998764 345455555544432111 0110 0111123344444443 557789
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 185 HFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 185 ~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
.++++.+++++.+.+.|++.|++.-+. | | ..++++|.+.+
T Consensus 263 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 263 VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 999999999999999999999885322 1 2 15689998864
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-15 Score=136.17 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
|+++++++|++. +.+|++.+++|++|.+.|+++|+++|+++|++++||++++.+....+ . . .++|++
T Consensus 133 d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~-----~-~-~g~Div 199 (391)
T TIGR01328 133 IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNP-----V-A-LGVDVV 199 (391)
T ss_pred CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCc-----h-h-cCCCEE
Confidence 688999998764 34888889999999999999999999999999999999976543221 1 1 269999
Q ss_pred eeecccccccccce-EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHH
Q 046506 107 SLNAHKWFFTTLDC-CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRH 185 (310)
Q Consensus 107 ~~~~hK~l~~p~g~-g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (310)
+.|++|+++++.+. |.+++.+++.+.+......... .+.......+|.+++ +.+.+..
T Consensus 200 v~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~-------------------~g~~l~~~~a~l~l~--~L~tl~~ 258 (391)
T TIGR01328 200 VHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDM-------------------TGSVISPFDAWLILR--GLKTLNI 258 (391)
T ss_pred EccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhC-------------------CCCCCCcHHHHHHHh--CcCcHHH
Confidence 99999999987652 3444556654433321110000 011122333444443 4456778
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 186 FLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 186 ~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
++++..++++++.+.|++.|++..+.-| ..++++|.+.+
T Consensus 259 r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 259 RMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 8999999999999999999988644221 14588898864
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=136.13 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=150.0
Q ss_pred ecCCCCCCEEEEecCCC------CC--cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccc-cc---CChHHHHHHHHH
Q 046506 5 IVGIDVKNFRAIKTTKS------SS--YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAIT-AV---DTLKPLCDVAKQ 72 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~------~~--~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G-~~---~pl~~I~~l~~~ 72 (310)
+.|.. ++.+++++. .. +.+|+++|+++|++.+.. ++.+|++++.+|.+| .+ .++++|+++|++
T Consensus 135 ~~G~~---~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~--~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~ 209 (460)
T PRK13238 135 LNGAT---AVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAE--NVPFIVMTITNNSAGGQPVSMANLRAVYEIAKK 209 (460)
T ss_pred HcCCE---EEEEeccccccccccccccCCcCHHHHHHHHhhcCCC--ceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 34555 888888641 12 359999999999863211 245888888888887 44 447899999999
Q ss_pred hCcEEEeecccccc-cccCh----hhhh-----hh-cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcc
Q 046506 73 FGIWVHVDAAYAGS-ACICP----EFRH-----FI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEY 141 (310)
Q Consensus 73 ~g~~l~vD~a~~~~-~~~~~----~~~~-----~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y 141 (310)
||+++++|+||... .+... .+.. .. .-...+|++++|+||.+++|.| |+++.++++.+.+.-.....+
T Consensus 210 ~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~ 288 (460)
T PRK13238 210 YGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILY 288 (460)
T ss_pred cCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhccccc
Confidence 99999999998542 21111 0110 00 0013589999999999999885 777777655544331111000
Q ss_pred ccccccccccccCCCCceeccCCCcc-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE
Q 046506 142 LKNKATESKQVVDYKDWQITLSRRFR-SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF 220 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~ 220 (310)
.. +...++.... ..++..+++..-.+ ...++..+..++|.+.|.+. |+++..+.....+..
T Consensus 289 --~g------------~~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~ 350 (460)
T PRK13238 289 --EG------------FPTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEA-GVPIQTPAGGHAVFV 350 (460)
T ss_pred --CC------------cccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHC-CCCeEccCCceEEEE
Confidence 00 0001111111 22233333321111 22333334568899999886 899886666655555
Q ss_pred EEcCCcchhhhhhhhccccchhHHHHHHH-HHHHHHHHHhcCcEEE-EEeE-E------CC------EeEEEEEccCCCC
Q 046506 221 RVSPSAVMDKLKTKYENSLLSEEERINEF-NRELLESINASGKAYM-THAV-L------GG------IYAIRFAAGATLT 285 (310)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~g~~~~-~~~~-~------~~------~~~iRis~~~~~~ 285 (310)
.+..... . .+. ..+ ..++..+|.++..+.. .... + .+ ...+|+++...--
T Consensus 351 d~~~~~~-----~-------~~~---~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~ 415 (460)
T PRK13238 351 DAGKFLP-----H-------IPA---EQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVY 415 (460)
T ss_pred EchhcCC-----C-------CCC---CCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccC
Confidence 5432100 0 000 000 1345555554443333 3221 1 12 4799999876556
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 046506 286 EERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 286 t~edi~~li~~l~~~~~~ 303 (310)
|.+++|.+.++|+++.+.
T Consensus 416 ~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 416 TQSHMDYVAEALKAVKEN 433 (460)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999998754
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=135.69 Aligned_cols=172 Identities=10% Similarity=0.120 Sum_probs=123.3
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC--cEEEeeccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG--IWVHVDAAY 83 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g--~~l~vD~a~ 83 (310)
+|+. +.+++. .|+++++++|++++ .+|.+++.+|++|.+.||++|+++||++| ++++||+++
T Consensus 125 ~Gi~---v~~vd~-------~d~~~l~~~l~~~T------rlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 125 LGVT---TTWFDP-------LIGADIAKLIQPNT------KVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred cCcE---EEEECC-------CCHHHHHHhcCCCc------eEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 4665 666653 35688999997653 58999999999999999999999999985 999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeeccccccccc--ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL--DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+.. .+... .++|+++.|+|||++++. +.|+++.+ +......... .+ .
T Consensus 189 a~p~~-~~pl~------~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~--~~-------------------~ 239 (395)
T PRK08114 189 AAGVL-FKALD------FGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLREN--SY-------------------L 239 (395)
T ss_pred ccccc-cCHHH------cCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHH--HH-------------------h
Confidence 88765 32211 269999999999999984 67766543 3332221100 00 0
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecC-----C-----------CceEEEEEEcC
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFP-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~-----------~~~~v~~~~~~ 224 (310)
.|.-..+...|..+ .|...+.-++++.+++|..+.+.|++.|.++ |.-| | ..++++|.+.+
T Consensus 240 ~G~~~~p~~a~l~~--rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 240 MGQMVDADTAYMTS--RGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred ccCCCCHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 11112344555444 4678889999999999999999999999886 4322 1 25688898864
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-15 Score=136.50 Aligned_cols=245 Identities=15% Similarity=0.138 Sum_probs=150.4
Q ss_pred ceecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++.+|+. ++.+|.+++ +++.+|+++|++.+++. +.++++++++|.+|.+.+ +++|+++|+++|++++
T Consensus 125 ~~~~g~~---~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li 195 (382)
T PRK06108 125 PKILGAR---VVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIV 195 (382)
T ss_pred HHHCCCE---EEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEE
Confidence 4456776 899999753 24679999999998653 347778888999998765 6889999999999999
Q ss_pred eeccccccccc-Chhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 79 VDAAYAGSACI-CPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 79 vD~a~~~~~~~-~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
+|.+++..... ........ .....-.++..|++|.++.| ..+|+++++ ++.+...... ..+...
T Consensus 196 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~-~~~~~~~~~~-~~~~~~---------- 263 (382)
T PRK06108 196 ADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAP-PALGQVLEKL-IEYNTS---------- 263 (382)
T ss_pred EehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCC-HHHHHHHHHH-HHhccc----------
Confidence 99998765542 11110000 01112346788999988644 457888764 3333322111 011100
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
+.-......+..+++ .+.+.+++..++..++.+++.+.|.+++++.+..+.....+.+.+.+..
T Consensus 264 -------~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~-------- 327 (382)
T PRK06108 264 -------CVAQFVQRAAVAALD-EGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT-------- 327 (382)
T ss_pred -------CCChHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC--------
Confidence 000111122222332 2345567888888999999999998888888764333334455554320
Q ss_pred hccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINA-SGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+ ..++.+.+.+ .|.....+..+ .+.+++|+|+. . ++++++.+++.|++.+
T Consensus 328 -------~-------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~-~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 328 -------D-------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA-R--DPARLDEAVERLRRFL 380 (382)
T ss_pred -------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-C--CHHHHHHHHHHHHHHH
Confidence 0 1356666654 45433333222 23579999966 3 7889999999888765
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=137.41 Aligned_cols=172 Identities=16% Similarity=0.242 Sum_probs=117.9
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. +++++. .|++++++++ +. +.+|++.+.++.++.+.|+++|+++|++||++++||++++.
T Consensus 126 ~G~~---v~~vd~-------~d~~~l~~~i-~~------tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 126 MGVE---VDYVDG-------RDEEAVAKAL-PG------AKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred cCce---EEEeCC-------CCHHHHHHhc-cc------CCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 4555 666643 2779999887 32 34788888889999999999999999999999999999976
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+....+ .. .++|+++.|+||++++|.+ .|+++ .++..+.+......++++.
T Consensus 189 ~~~~~p----~~---~g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g~------------------- 241 (389)
T PRK05968 189 PVFQRP----IT---LGVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLGA------------------- 241 (389)
T ss_pred hhccCc----hh---cCCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCCC-------------------
Confidence 543222 11 2589999999999999865 45554 5554443322111111110
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC------------CceEEEEEEcC
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR------------HFAVVCFRVSP 224 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------------~~~~v~~~~~~ 224 (310)
.......|..+ .+...+..++++..++++++.+.|+++|++..+..| ..++++|.+.+
T Consensus 242 -~~~~~~A~~~l--~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 242 -KLSPFEAWLLL--RGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred -CCChHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 01123333333 345677899999999999999999999999665432 14588998874
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-15 Score=133.39 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=147.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD 80 (310)
+...|+. ++.+|.+++ +.+|++++++++.+. +.+|++++.+|++|.+.|++++.++|+.+ |+++++|
T Consensus 112 ~~~~g~~---~~~~~~~~~--~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D 180 (346)
T TIGR01141 112 AKIHGAE---VVKVPLDED--GQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVD 180 (346)
T ss_pred HHHcCCe---EEEeccCCC--CCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 3456776 899999864 579999999987543 34788888999999999999999999987 9999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++|+...... ......... ..+++..|.+|+++.| ..+|+++.+ +..++........+ .
T Consensus 181 ~~y~~~~~~~-~~~~~~~~~-~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~----~------------- 240 (346)
T TIGR01141 181 EAYGEFSGEP-STLPLLAEY-PNLIVLRTLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAPF----N------------- 240 (346)
T ss_pred CchhhhcCCc-cHHHHHhhC-CCEEEEehhhHhhhchhhhceeeecC-HHHHHHHHhccCCC----C-------------
Confidence 9987332211 111111111 1235567889999654 347888764 44443321111000 0
Q ss_pred eccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
.......++...+.. ..+++..++..++.+++++.|.+++++++. ++...++++.+.. +
T Consensus 241 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-~------------ 300 (346)
T TIGR01141 241 ------LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-D------------ 300 (346)
T ss_pred ------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-C------------
Confidence 011222223333322 257778888899999999999988888865 4455666665543 1
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECC-EeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAV-LGG-IYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~-~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.+++.+.|.+.|. .+.+.. ..+ .+.+|+|++ +++|+++++++|+
T Consensus 301 -----------~~~~~~~L~~~gI-~v~~g~~f~~~~~~iRls~~----~~~~i~~~~~~l~ 346 (346)
T TIGR01141 301 -----------ADALFEALLEKGI-IVRDLNSYPGLPNCLRITVG----TREENDRFLAALR 346 (346)
T ss_pred -----------HHHHHHHHHHCCe-EEEeCCCcCCCCCeEEEecC----CHHHHHHHHHHhC
Confidence 1456777777774 444332 212 578999943 6889999998873
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=138.06 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=108.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|++. +.+|++.+++|++|.+.|+++|+++|++||++++||+||+.+....+. + .++|+
T Consensus 205 ~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl------~-~gaDi 271 (464)
T PLN02509 205 TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL------E-LGADI 271 (464)
T ss_pred CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh------h-cCCcE
Confidence 4679999998664 348899999999999999999999999999999999999766542221 1 25999
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
+++|+|||++++.+ .|+++++++....+..... .. .+.......+|..+ .+.+.+
T Consensus 272 vv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~--~~-------------------~g~~l~p~~A~l~l--r~L~tL 328 (464)
T PLN02509 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ--NS-------------------EGSGLAPFDCWLCL--RGIKTM 328 (464)
T ss_pred EEecCcccccCCCccceeEEEeccHHHHHHHHHHH--Hh-------------------cCCCcCHHHHHHHH--hhhhhH
Confidence 99999999999876 6777776664322211000 00 00112233344444 356788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEE
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEV 209 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v 209 (310)
..++++..++++++.+.|++.|.++-
T Consensus 329 ~~R~~r~~~nA~~la~~L~~~p~V~~ 354 (464)
T PLN02509 329 ALRIEKQQENARKIAMYLSSHPRVKK 354 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 99999999999999999999998853
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-15 Score=126.14 Aligned_cols=239 Identities=15% Similarity=0.109 Sum_probs=173.3
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+.+.|+++++++++.+. +|++++++..+|...++.+|.+++|++|+++.-|=||++|.++.+.+. .++
T Consensus 152 ~~~~P~~~~~~~~dd~A------vV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~------~ga 219 (407)
T COG3844 152 GVIAPRALEEAITDDVA------VVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHA------AGA 219 (407)
T ss_pred eeeChHHHHHhhccceE------EEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecc------cCC
Confidence 46788899999988753 899999999999999999999999999999999999999999887654 379
Q ss_pred Ceeeeeccccccc-ccceEEEEEeCchhHHhhhccCCcccccccccc---ccccCCCCceeccCCC--cchHHHHHHHHH
Q 046506 104 DSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATES---KQVVDYKDWQITLSRR--FRSLKLWFVLRN 177 (310)
Q Consensus 104 D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 177 (310)
|+-+.+.||.+.+ |.+.+++|+.++.. ++..+....++....+.. -..+..+-..+.+|.. ....++-.+|..
T Consensus 220 DfaigcsyKYLNgGPGapa~l~v~~~h~-e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDi 298 (407)
T COG3844 220 DFAIGCSYKYLNGGPGAPAGLFVAPRHR-ERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDI 298 (407)
T ss_pred CeeeeeeceeccCCCCCceeEEeccccc-cccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhh
Confidence 9999999999986 78888999988743 343333334443222100 0011111112222222 112334455666
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHcCC-C--CeEEecCC----CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 178 YGVANLRHFLRSHVNMAKLFERLVGSD-K--RFEVVFPR----HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 178 ~~~~~~~~~~~~~~~~a~~l~~~L~~~-~--~~~v~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
...-++.+.+++...++.++.+.++.. + ++++..|. +.+.|+|..+..
T Consensus 299 fa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~------------------------- 353 (407)
T COG3844 299 FADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHG------------------------- 353 (407)
T ss_pred hhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcH-------------------------
Confidence 666678999999999999999999764 3 56777653 577888877642
Q ss_pred HHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..+.+.|.+.|.+- ++....++||.++-.|++-+||=..+++|.+++..+
T Consensus 354 ~~V~qaLi~rGVig----D~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 354 YQVMQALIDRGVIG----DFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred HHHHHHHHHcCccc----cccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 35666677777532 233467899999988999999999999999998765
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=126.68 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=162.6
Q ss_pred CEEEEecC-CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEeeccccccc
Q 046506 12 NFRAIKTT-KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHVDAAYAGSA 87 (310)
Q Consensus 12 ~v~~v~~~-~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~ 87 (310)
.++..|.. +++.|.||+++||+++.+.. +.+.+.-.+.|++|.+ ++|.+|+++|.+||+.++.|..|+--.
T Consensus 130 ~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv 204 (388)
T COG1168 130 KVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLV 204 (388)
T ss_pred EEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccccccc
Confidence 47788876 46788999999999998753 2355556677888986 568899999999999999999996555
Q ss_pred ccChhhhhhh---cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 88 CICPEFRHFI---DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 88 ~~~~~~~~~~---~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+....+-... .....--+.+.++.|+|..+ ..|+.+++.++.. +..+...-......
T Consensus 205 ~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~l-r~~~~~~l~~~~~~------------------ 265 (388)
T COG1168 205 LGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNREL-RAKFLKRLKRNGLH------------------ 265 (388)
T ss_pred ccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHH-HHHHHHHHHHhcCC------------------
Confidence 4442222111 11112345568889999975 5667777777754 22221110111111
Q ss_pred CCcchHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 164 RRFRSLKLWFVLRN--YGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 164 ~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
...++++.++..+ .|.+++++..+.+.++.+++.+.|.+ +|++++..+..+-++.+.+.+-.+.
T Consensus 266 -~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~------------ 332 (388)
T COG1168 266 -GPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLD------------ 332 (388)
T ss_pred -CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCCC------------
Confidence 1234444444444 48899999999999999999999975 6999998666677777777764321
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEE---CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVL---GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. .++.+.|.++.++.++++.. .+.+.+|+.+. ++.+-++..++.|+..++
T Consensus 333 --d-------~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~a---cpr~~L~eal~ri~~al~ 385 (388)
T COG1168 333 --D-------SELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA---CPRAILEEALERLKRALK 385 (388)
T ss_pred --h-------HHHHHHHHHhhcEeccCCCccCcCCCceEEEecC---CCHHHHHHHHHHHHHHHh
Confidence 0 35667777777777765433 45789998854 567667776666665443
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-15 Score=135.06 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=119.4
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++.+ |+++++++|++. +.+|++.+.+|++|.+.|+++|+++||+||++++||++++
T Consensus 102 ~~g~~---~~~v~~~-------d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~ 165 (369)
T cd00614 102 KLGIE---VTFVDPD-------DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFA 165 (369)
T ss_pred hcCeE---EEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 34554 6666543 478999998653 4588889999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+....+ . . .++|+++.|++|+++++.. .|+++.+++..+++..... .+.
T Consensus 166 ~~~~~~~----~--~-~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~~-------------------- 217 (369)
T cd00614 166 TPYLQRP----L--E-LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR-LAL-------------------- 217 (369)
T ss_pred chhcCCh----h--h-hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH-Hhh--------------------
Confidence 7654211 1 1 1589999999999987643 5666555434433221110 000
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
+........|.+++. .+.+..++++..++++++.+.|++.|++.-+.-| ..++++|.+.+
T Consensus 218 g~~~~p~~a~~~l~~--l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~ 294 (369)
T cd00614 218 GTILSPFDAWLLLRG--LKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG 294 (369)
T ss_pred CCCCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence 001123444555443 3567778999999999999999998877533222 36789998874
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=131.36 Aligned_cols=257 Identities=17% Similarity=0.161 Sum_probs=165.2
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
+.|.. .++|++|++ ++.||++.+|++|++.++ .|+.+|. .|...++++|.++|++||++++.|+||+
T Consensus 93 ~~Ga~---PVFvDid~~-T~nid~~~ie~aIt~~tK------AIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa 159 (374)
T COG0399 93 LVGAK---PVFVDIDPD-TLNIDPDLIEAAITPRTK------AIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQA 159 (374)
T ss_pred HcCCe---EEEEecCCc-ccCCCHHHHHHHcccCCe------EEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchh
Confidence 34555 999999986 689999999999998743 5555554 6777899999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.|...-.. ..-.++.+-+++|-++|.+.+. ..|+++.++++..++.... ...+...+..+.+ .....|-
T Consensus 160 ~Ga~y~gk---~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~l-----r~hG~~~~~~~~y--~~~~~G~ 228 (374)
T COG0399 160 HGATYKGK---KVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSL-----RNHGLSRDAVFKY--LHEELGY 228 (374)
T ss_pred ccCeecCc---ccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHH-----HHhCcCCCccccc--eeeeccc
Confidence 77642221 1223456788999999998766 6778888887655443211 1111000000111 1223333
Q ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHH
Q 046506 165 RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEE 244 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
.++...+.+++.....+.++++.++..++++...+.|++++++.+...+.....++...+.-+ +.+
T Consensus 229 N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~--------------~~~ 294 (374)
T COG0399 229 NYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILV--------------DEE 294 (374)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEe--------------cCC
Confidence 445555666666666788999999999999999999999887766544333222222222100 000
Q ss_pred HHHHHHHHHHHHHHhcCcE---EEEEeE---------------EC-----CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 245 RINEFNRELLESINASGKA---YMTHAV---------------LG-----GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 245 ~~~~~~~~l~~~l~~~g~~---~~~~~~---------------~~-----~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
......+.+.|.+.|.. +..|.. +. ....+++- .++..+++|+++++++|++++
T Consensus 295 --~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP-~~p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 295 --GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLP-LHPNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred --CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEcc-CCCCCCHHHHHHHHHHHHHHh
Confidence 01113566666666432 222210 00 14577776 568999999999999999876
Q ss_pred H
Q 046506 302 E 302 (310)
Q Consensus 302 ~ 302 (310)
.
T Consensus 372 ~ 372 (374)
T COG0399 372 G 372 (374)
T ss_pred c
Confidence 4
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=124.01 Aligned_cols=194 Identities=18% Similarity=0.234 Sum_probs=128.8
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
-+|++ +++|+.+ |++.++++|+++|+ .|.+.+..|+.+.+.|+++|+++||++|++++||.+.+
T Consensus 124 ~~Gi~---v~fvd~~-------d~~~~~~aI~~nTk------avf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 124 RLGIE---VRFVDPD-------DPENFEAAIDENTK------AVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred hcCcE---EEEeCCC-------CHHHHHHHhCcccc------eEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 46777 8887664 37999999999875 89999999999999999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhh-hccCCcccccccccccccc--C-CCCce
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNS-LSTNPEYLKNKATESKQVV--D-YKDWQ 159 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~-~~~~~~y~~~~~~~~~~~~--~-~~~~~ 159 (310)
.+++.-|.. .++|+++-|..||+++- ...|.++|--. .++-. ....|.| ....+++-+.. + +....
T Consensus 188 tpyl~rP~~-------hGADIVvHS~TK~igGhGt~iGG~iVD~G-~FDw~~~~rfP~~-~~p~p~YhGl~~~~~~g~~a 258 (426)
T COG2873 188 TPYLCRPIE-------HGADIVVHSATKYIGGHGTAIGGVIVDGG-KFDWTANGRFPEF-TTPDPSYHGLVYTETFGNAA 258 (426)
T ss_pred cceecchhh-------cCCCEEEEeecccccCCccccceEEEeCC-ccccccCCCCccc-CCCCccccceehhhhcccHH
Confidence 876544421 26999999999999973 34555555433 11111 0011111 11111110000 0 00000
Q ss_pred ------eccCCCc----chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----------------
Q 046506 160 ------ITLSRRF----RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---------------- 213 (310)
Q Consensus 160 ------~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---------------- 213 (310)
.++.|.. .....|..+ .|.|.+.-+++|+++++..+.+.|.+.|.+..++-|
T Consensus 259 f~~~~r~~~lRDlGa~lsPfnAfl~l--qGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~ 336 (426)
T COG2873 259 FIIKARVQLLRDLGATLSPFNAFLLL--QGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLP 336 (426)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHH--hchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhcc
Confidence 0111111 112233332 378899999999999999999999999999876522
Q ss_pred --CceEEEEEEcCC
Q 046506 214 --HFAVVCFRVSPS 225 (310)
Q Consensus 214 --~~~~v~~~~~~~ 225 (310)
...+++|.+.+.
T Consensus 337 ~g~g~vltF~~kgg 350 (426)
T COG2873 337 KGAGAVLTFGVKGG 350 (426)
T ss_pred CCCceEEEEEecCh
Confidence 256889998874
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-15 Score=136.53 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=114.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|++. +.+|++.+++|++|.+.|+++|+++|+++|++++||+|++.+....+. . .++|+
T Consensus 134 ~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl----~---~g~Di 200 (386)
T PRK06767 134 ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL----E---LGCDA 200 (386)
T ss_pred CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch----h---cCCcE
Confidence 4789999998764 348888999999999999999999999999999999999754432221 1 25899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|++|+++++.+ .|+++.+++ .+.+........++ + ....+..|..++ +...+
T Consensus 201 v~~S~sK~l~g~g~~~gG~v~~~~~-~i~~~~~~~~~~~g-------------------~-~~~~~~a~l~~~--~L~tl 257 (386)
T PRK06767 201 VVHSATKYIGGHGDVVAGVTICKTR-ALAEKIRPMRKDIG-------------------G-IMAPFDAWLLLR--GLKTL 257 (386)
T ss_pred EEecCcceecCCCCceeEEEEeChH-HHHHHHHHHHHHhC-------------------C-CCCHHHHHHHHc--CCCcH
Confidence 99999999988765 455655443 33332110000000 0 012233444443 34566
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------CceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------HFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------~~~~v~~~~~~ 224 (310)
..++++.+++++++.+.|+++|+++.+..| ..++++|.+.+
T Consensus 258 ~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~ 309 (386)
T PRK06767 258 AVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG 309 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC
Confidence 778899999999999999999999855422 25689998864
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=130.98 Aligned_cols=236 Identities=12% Similarity=0.048 Sum_probs=148.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++.+.+.+| +++++.+.+. +.++++++++|++|...+ +++|+++|+++|+++++
T Consensus 111 ~~~~g~~---~~~v~~~~~~~~~~~-~~~~~~~~~~------~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 111 LQQVGCE---IRRYSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred HHHcCCe---EEEEecccccCCCcc-HHHHHhccCC------CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 4567777 999998764445565 4555655432 347778899999999988 88899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|+++................. .-.++..|++|+++.| .-+|+++..++..+......... ..
T Consensus 181 De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~----~~------------ 243 (356)
T PRK08056 181 DEAFIDFIPDETGFIPQLADN-PHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMP----WS------------ 243 (356)
T ss_pred ecchhccCCcchHHHHHhccC-CCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC----Cc------------
Confidence 999854432211111111221 2457889999999944 55777765554443322111100 00
Q ss_pred eeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 159 QITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
...+...++...+ +.+...+..++..+..+++.+.|++++++.+. ++.++.+.+.+...
T Consensus 244 -------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~------------ 303 (356)
T PRK08056 244 -------INAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCERP------------ 303 (356)
T ss_pred -------hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCCC------------
Confidence 0112223333333 23445566677788889999999888888765 55666665554321
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+.|.....+..+. ..+++|+++. ++++.++|+++|+++.
T Consensus 304 ------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 304 ------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR----SAAENERLLAALRNVL 353 (356)
T ss_pred ------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc----CHHHHHHHHHHHHHHH
Confidence 1356677777775444433332 2468999944 5789999999998764
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-15 Score=133.98 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=120.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
..|+++++++|++++ .+|++.+++|++|.+.|+++|+++|+++|++++||++++.+....+ . + .++|
T Consensus 123 ~~d~~~l~~~i~~~T------klV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~p----l--~-~gaD 189 (364)
T PRK07269 123 ANTEEELIAAIEEDT------DIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRP----I--E-LGAD 189 (364)
T ss_pred cCCHHHHHHhcCcCc------eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc----h--h-hCCc
Confidence 467899999997654 4899999999999999999999999999999999999865543211 1 1 2699
Q ss_pred eeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 105 SFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+++.|+||+++++.+ .|+++.++++...+..... .+ .|........|..+ .+...
T Consensus 190 ivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~~--------------------~G~~~s~~~a~l~~--~~L~t 246 (364)
T PRK07269 190 IVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-NT--------------------TGAVLSPFDSYLLM--RGLKT 246 (364)
T ss_pred EEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-HH--------------------hCCCCCHHHHHHHH--cCCCc
Confidence 999999999998765 5666666665433322100 00 01112344445444 35567
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeE-EecCCCceEEEEEEcC
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFE-VVFPRHFAVVCFRVSP 224 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~~~~~~v~~~~~~ 224 (310)
++.++++..++++.+.+.|++.|++. ++-|+..++++|.+.+
T Consensus 247 L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~ 289 (364)
T PRK07269 247 LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD 289 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC
Confidence 99999999999999999999999875 4446678899998863
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-14 Score=129.51 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=133.1
Q ss_pred cEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhh-----hcCCCCCCeeeeecccccccccc
Q 046506 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-----IDGVEGADSFSLNAHKWFFTTLD 119 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~hK~l~~p~g 119 (310)
+.+|++....+++|.+.|+++|+++|++||+++++|++|+.+.. ....+.. .....++|+++.+.+|+++ |.|
T Consensus 139 t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~-g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~g 216 (392)
T PLN03227 139 RRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL-GKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVG 216 (392)
T ss_pred cEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccccccc-CCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccC
Confidence 56888888899999999999999999999999999999974432 1110000 0112357999999999876 432
Q ss_pred eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 046506 120 CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFE 198 (310)
Q Consensus 120 ~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~ 198 (310)
|++ +.+++...........+.+ .++.+ +.+.+..+++..+ ...+++.++.+++.++++
T Consensus 217 -g~v-~~~~~~~~~~~~~~~~~~~-----------------~~~~~p~~~~aa~~al~~~--~~~~~~~~~l~~~~~~l~ 275 (392)
T PLN03227 217 -GMT-VGSEEVVDHQRLSGSGYCF-----------------SASAPPFLAKADATATAGE--LAGPQLLNRLHDSIANLY 275 (392)
T ss_pred -cEE-ecCHHHHHHHHHhCcCccc-----------------cCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHH
Confidence 233 3444333211111111111 11111 1222222333222 224567888899999999
Q ss_pred HHHcCCCCeEE----------ecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE-E
Q 046506 199 RLVGSDKRFEV----------VFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMT-H 267 (310)
Q Consensus 199 ~~L~~~~~~~v----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~ 267 (310)
+.|++. ++.. ...+.++++.+.+.+.... .. .+ -......+.+.+.++|.+... +
T Consensus 276 ~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~---------~~-~~---~~~~~~~~~~~~~~~Gi~~~~~~ 341 (392)
T PLN03227 276 STLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSDQEAT---------RR-TD---ETLILDQIAHHSLSEGVAVVSTG 341 (392)
T ss_pred HHHHhc-CCccccccccccccCCCCCCCEEEEEeCCHHHh---------hh-hh---hhhHHHHHHHHHHHCCCEEEecc
Confidence 999752 3321 2234567788877542100 00 00 011235777888888865432 1
Q ss_pred e------EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 268 A------VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 268 ~------~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. .......+|++++ ...|+||||+++++|++.+.++.
T Consensus 342 ~~~~~~~~~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 342 GHVKKFLQLVPPPCLRVVAN-ASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred cccCCcCCCCCCceEEEEec-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0112468999966 57999999999999999987753
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=132.31 Aligned_cols=259 Identities=14% Similarity=0.075 Sum_probs=153.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. ++.++++++ ++.+|+++++++|++.+ .+|+.++ .+|...|+++|+++|++||+++++|+|
T Consensus 90 ~~~~G~~---~v~vd~~~~-~~~~d~~~l~~~i~~~t------kav~~~~---~~G~~~d~~~i~~~a~~~gi~vi~D~a 156 (379)
T PRK11658 90 IVLLGAT---PVMVDVDRD-TLMVTPEAIEAAITPRT------KAIIPVH---YAGAPADLDAIRAIGERYGIPVIEDAA 156 (379)
T ss_pred HHHcCCE---EEEEecCCC-cCCcCHHHHHHhcccCC------eEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECC
Confidence 3456776 999999875 46799999999997643 3554333 479999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCc-ccccccc-ccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPE-YLKNKAT-ESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~-y~~~~~~-~~~~~~~~~~~~ 159 (310)
|+.+....... ... .+.++++++.+|++.++. .|+++.++++...+.... ..+ +...... .....+.+. .
T Consensus 157 ~a~g~~~~~~~---~g~-~g~~~~Sf~~~K~l~~g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~ 229 (379)
T PRK11658 157 HAVGTYYKGRH---IGA-RGTAIFSFHAIKNITCAE-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAE--V 229 (379)
T ss_pred CccCCeECCee---cCC-CCCEEEeCCCCCcCcccC-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcce--e
Confidence 98665432211 112 245889999999986643 344444555543332210 001 0000000 000000000 0
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----ceEEEEEEcCCcchhhhhhh
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----FAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~~~~~~~~~~~~~~~~ 234 (310)
...|..+....+.+++.....++++++.++..++++++.+.|++++...+..+.. ..++++++.+...
T Consensus 230 ~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 302 (379)
T PRK11658 230 LTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERC------- 302 (379)
T ss_pred eccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccc-------
Confidence 1223333444556666666678899999999999999999999886443322211 2344555543100
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEE---EEeEE--------C----------CEeEEEEEccCCCCCHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYM---THAVL--------G----------GIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~~--------~----------~~~~iRis~~~~~~t~edi~~l 293 (310)
.....++.+.|.+.|+... .+... . ....+-+- .++..|++|++++
T Consensus 303 ------------~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP-~~~~l~~~~~~~i 369 (379)
T PRK11658 303 ------------GISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLP-LFPDMTDADVDRV 369 (379)
T ss_pred ------------cCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEcc-CCCCCCHHHHHHH
Confidence 0011356666666664211 11000 0 12345554 4578999999999
Q ss_pred HHHHHHHH
Q 046506 294 WTVVQEHL 301 (310)
Q Consensus 294 i~~l~~~~ 301 (310)
+++|+++.
T Consensus 370 ~~~i~~~~ 377 (379)
T PRK11658 370 ITALQQIA 377 (379)
T ss_pred HHHHHHHH
Confidence 99999864
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=134.59 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=114.6
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++. .|+++++++|+++ +.+|++.+.+|++|.+.|+++|+++||++|++++||++++
T Consensus 126 ~~Gv~---v~~vd~-------~d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 126 KLGIT---VKFVDP-------SDPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred hCCEE---EEEECC-------CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 34554 666654 3789999999764 3478888999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeCchh-HHh------hhccCCccccccccccccccC--
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKDPSD-LVN------SLSTNPEYLKNKATESKQVVD-- 154 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~~~~-~~~------~~~~~~~y~~~~~~~~~~~~~-- 154 (310)
.+....+. . .++|+++.|+||++++|.. .|++++.+... ... .....+.+.........+...
T Consensus 190 ~~~~~~pl------~-~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (431)
T PRK08248 190 SPYLLRPI------E-HGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYI 262 (431)
T ss_pred ccccCChh------H-cCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHH
Confidence 54332221 1 2699999999999998853 67777654421 100 000001110000000000000
Q ss_pred ---CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 155 ---YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 155 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
........|....+..+|..+ .|...+..++++..+++..+.+.|+++|++.-+
T Consensus 263 ~~~~~~~~~~~G~~l~p~~a~l~~--rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V 319 (431)
T PRK08248 263 TKARVQLLRDLGAALSPFNSFLLL--QGLETLHLRMERHSENALAVAKFLEEHEAVEWV 319 (431)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 000011112223344455443 366788999999999999999999999998643
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-15 Score=136.01 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=144.8
Q ss_pred cEEEEEeccCCcccc-cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEE
Q 046506 45 PLFLCATIGTTAITA-VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCL 123 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~-~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l 123 (310)
+..|.++|+.|.+|+ +.|++++++ ++++||++++.+..+.+... .++..+++||+++ |.|.|++
T Consensus 146 ~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~--------~~v~~~saqK~lG-P~Gl~~v 210 (365)
T PLN02452 146 AKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSK--------YGVIYAGAQKNVG-PSGVTIV 210 (365)
T ss_pred CcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHH--------cCEEEEecccccC-CCCeEEE
Confidence 458999999999999 588888864 89999999999998876432 3344479999985 9999999
Q ss_pred EEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHH
Q 046506 124 WVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 124 ~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~ 200 (310)
+++++. +.+.-...|.|+..... ....... .++ +..+++..+++.+..+ |++.+.++..++++++++.
T Consensus 211 ~vr~~~-l~~~~~~~~~~~~~~~~-------~~~~s~~-~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~ 281 (365)
T PLN02452 211 IIRKDL-IGNARPITPGMLDYKIH-------AENDSLY-NTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDA 281 (365)
T ss_pred EEcHHH-HhhcccCCCchhhHHHH-------HhcCCcc-CChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 998774 33322222333221100 0000000 122 2345666778877665 8999999999999999999
Q ss_pred HcCCCCeEEe-cC---CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 201 VGSDKRFEVV-FP---RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 201 L~~~~~~~v~-~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
|.+.+|+... .+ ....+++|.+... .+.+.+.+.+.++|.+...+... .+.+
T Consensus 282 l~~~~G~y~~~~~~~~rs~~~vsF~~~~~----------------------~~~~~f~~~~~~~g~~~~~G~r~--~gg~ 337 (365)
T PLN02452 282 IDESNGFYVCPVEKSVRSLMNVPFTLGGS----------------------ELEAEFVKEAAKAGMVQLKGHRS--VGGM 337 (365)
T ss_pred HHhCCCcccCCCChHHhCCeEEEEEcCCc----------------------hhHHHHHHHHHHCCCcccCCccc--cCce
Confidence 9988787211 11 1234788887653 24467888888888655443322 2239
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
|+|+-+ ..+.++|+.|++.+++..++
T Consensus 338 R~s~yn-a~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 338 RASIYN-AMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EEECcC-CCCHHHHHHHHHHHHHHHHh
Confidence 999886 69999999999999987653
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=131.43 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=114.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|+++ +.+|++.+++|++|.+.|+++|+++|+++|++++||++++.+....+ . . .++|+
T Consensus 137 ~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~----l--~-~~~Di 203 (398)
T PRK08249 137 GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNP----L--A-LGADL 203 (398)
T ss_pred CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCc----h--h-hCCCE
Confidence 6889999999765 34788889999999999999999999999999999999975543211 1 1 25999
Q ss_pred eeeecccccccccc-eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHH
Q 046506 106 FSLNAHKWFFTTLD-CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLR 184 (310)
Q Consensus 106 ~~~~~hK~l~~p~g-~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (310)
++.|++|+++++.+ .|++++.+++...+..... .+ .+........|.+++ +.+.+.
T Consensus 204 vv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~-~~--------------------~g~~~s~~~a~l~l~--~l~tL~ 260 (398)
T PRK08249 204 VIHSATKFLSGHADALGGVVCGSKELMEQVYHYR-EI--------------------NGATMDPMSAYLILR--GMKTLK 260 (398)
T ss_pred EeccCceecCCCCCceEEEEECCHHHHHHHHHHH-Hh--------------------cCCCCCHHHHHHHHh--CcchHH
Confidence 99999999987643 3445555555443322111 00 011123334444443 567788
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 185 HFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 185 ~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
.++++.+++++.+.+.|++.|.++-+.-| ..++++|.+.+
T Consensus 261 ~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 261 LRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 89999999999999999999888643211 14588888864
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=132.05 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=154.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHH---HHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKP---LCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~---I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.+..+.+.+|+++|++.+++...+...+.++++..++|++|...+.++ |+++|++||+++++
T Consensus 110 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 110 ARLLGAE---VIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp HHHTTSE---EEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred ccccCce---eeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceee
Confidence 4566777 88999764456799999999999985443323567888888999999877555 55559999999999
Q ss_pred ecccccccccChhh---hhhhcCCCCCC-eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPEF---RHFIDGVEGAD-SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~~---~~~~~~~~~~D-~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|.+|+......... ...... +.+ +++.|..|.++.| .-.|++++ ++...+..-.....+.. .
T Consensus 187 De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~-~--------- 253 (363)
T PF00155_consen 187 DEAYSDLIFGDPDFGPIRSLLDE--DDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLS-S--------- 253 (363)
T ss_dssp EETTTTGBSSSSHTHHHHGHHTT--TSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTS-S---------
T ss_pred eeceeccccCCCccCcccccccc--cccceeeeeccccccccccccccccc-hhhhhhhhhhccccccc-c---------
Confidence 99997766543211 111121 233 7789999998766 34677777 44443322111111111 0
Q ss_pred CCCceeccCCCcchHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYG--VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
......+...+...+ ....+++.++..++.+++.+.|.+. ++.+..++ .+++.+...+.
T Consensus 254 ----------~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~------- 314 (363)
T PF00155_consen 254 ----------SPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRLDP------- 314 (363)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEESH-------
T ss_pred ----------chhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEccc-------
Confidence 001111222222222 1267888899999999999999887 89888554 55555543331
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
....++.+.|.++ |....++......+++|+++ . ..++|+++.++++|
T Consensus 315 ---------------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a-~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 315 ---------------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-A-SHSEEDLEEALERL 363 (363)
T ss_dssp ---------------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-G-CSCHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-c-cCCHHHHHHHHhhC
Confidence 1224677777777 65444433333467899997 3 57899999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=131.17 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=116.6
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|++++++++++. +.+|.+.+++|++|.+.|+++|+++|+++|++++||++++.+....+. . .++|+
T Consensus 125 ~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl------~-~gaDi 191 (386)
T PRK08045 125 GDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL------A-LGADL 191 (386)
T ss_pred CCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch------h-hCCCE
Confidence 6789999998764 448888999999999999999999999999999999999766442221 1 25899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|.|||++++.+ .|++.+++++...+.. ....++.. ....+..|.+++ |.+.+
T Consensus 192 vv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~-~~~~~~g~--------------------~~~p~~~~l~~r--gl~tl 248 (386)
T PRK08045 192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELA-WWANNIGV--------------------TGGAFDSYLLLR--GLRTL 248 (386)
T ss_pred EEeecceeccCCCCceeEEEEeCcHHHHHHHH-HHHHhcCC--------------------CCCHHHHHHHHh--hhccH
Confidence 99999999998876 5666555554432221 00011110 123345565554 44568
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
..++++..++++.+.+.|++.|.+.-+. | | ..++++|.+.+
T Consensus 249 ~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 249 VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 9999999999999999999999885332 1 1 14578888864
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=130.58 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=115.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++|+++|+++ +.+|++..++|++|.+.|+++|+++|+++|+++++|++++.+....+. . .++|+
T Consensus 134 ~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~------~-~gaDi 200 (388)
T PRK07811 134 SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL------A-LGADV 200 (388)
T ss_pred CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch------h-hCCcE
Confidence 5789999999764 348888899999999999999999999999999999999766432221 1 25899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
+++|++|++++|.+ .|+++++++....... ....+. +........|.+++ +...+
T Consensus 201 vv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~-~~~~~~--------------------g~~~s~~~a~l~~~--~L~tl 257 (388)
T PRK07811 201 VVHSTTKYIGGHSDVVGGALVTNDEELDEAFA-FLQNGA--------------------GAVPGPFDAYLTLR--GLKTL 257 (388)
T ss_pred EEecCceeecCCCCcEEEEEEECCHHHHHHHH-HHHHhc--------------------CCCCCHHHHHHHHh--ccCcH
Confidence 99999999998865 5667766665432221 000000 00112233343333 44568
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
..++++..++++.+.+.|++.|++.-+.-| ..++++|.+.+
T Consensus 258 ~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 258 AVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 889999999999999999999998643211 14588998864
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-14 Score=130.22 Aligned_cols=252 Identities=12% Similarity=0.018 Sum_probs=157.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++++.+.+|++++++++.+. +.+++++.++|++|.+.+ +++|.++|++||+++++
T Consensus 147 ~~~~g~~---v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~ 217 (410)
T PRK06290 147 TKYYGGE---VYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQ 217 (410)
T ss_pred HHHcCCE---EEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 4556776 99999987556788999999988653 447777788999999988 57788899999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++....... .... .......+++..|..|.++.| .-+|+++ .++..+.........+ ...
T Consensus 218 DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii-~~~~l~~~l~~~~~~~-~~~----------- 283 (410)
T PRK06290 218 DAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVV-GNELIVKAFATVKDNN-DSG----------- 283 (410)
T ss_pred ecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEeEE-eCHHHHHHHHHHHhcc-ccC-----------
Confidence 999975433211 1111 111123468889999999655 2356665 4554433221111011 000
Q ss_pred CceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE-EEcCCcchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF-RVSPSAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~-~~~~~~~~~~~~~~ 234 (310)
...+...++...+. .+..++..++..+..+.+.+.|++. ++.+. +|..+.+.| .+++....
T Consensus 284 ---------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~f~l~v~lp~~~~~------ 346 (410)
T PRK06290 284 ---------QFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFKAE-MPGGTFYLYVKAPKGTKS------ 346 (410)
T ss_pred ---------CcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCeeeEEEEECCCcccc------
Confidence 00111112222221 2345667777788888999999886 77765 455555443 44331000
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.... .-..++.+.|.++|.+.+.+.. ...+++||++..+..++|+.++++++|++.+.++
T Consensus 347 --~~~~-------~~~~~~~~~Ll~~~~v~~~p~~-~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 347 --GIKF-------ENAEEFSQYLIKEKLISTVPWD-DAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred --CCCC-------CCHHHHHHHHHHhCCEEEECCc-cccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 0000 0124677888888776654432 1235899998877789999999999999988765
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=131.15 Aligned_cols=174 Identities=19% Similarity=0.251 Sum_probs=119.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
.+|+. +++++.+ |+++++++|+++ +.+|++.+++|++|.+.|+++|+++|+++|+++++|++++
T Consensus 123 ~~G~~---v~~vd~~-------d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 123 RFGIE---TTFVDLT-------DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred HcCcE---EEEECCC-------CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCc
Confidence 34555 6666653 578999998764 3488888999999999999999999999999999999986
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
.+....+. . .++|+++.|+||+++++.. .|++++.++..+.+.. .+... .+
T Consensus 187 ~~~~~~pl------~-~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~----~~~~~-----------------~g 238 (390)
T PRK08133 187 TPALQQPL------K-LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRT-----------------AG 238 (390)
T ss_pred ccccCCch------h-hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHH----HHHHH-----------------hC
Confidence 55432221 1 1589999999999987642 4444445554332221 01110 01
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
........|..++ +.+.+..++++..+++..+.+.|.+.|++.-+.-| ..++++|.+.+
T Consensus 239 ~~~~~~~a~~~l~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 239 PTLSPFNAWVFLK--GLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred CCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 1122334444443 55688999999999999999999999988644221 14588898864
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=128.07 Aligned_cols=256 Identities=13% Similarity=0.082 Sum_probs=151.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+...|++ ++.++.++++++.+|++++++++.+.+ .++++++++|++|.+.+ +++|.++|+++|+++++
T Consensus 137 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 137 AAFSGLE---VRLYDLLPEKDWEIDLDGLEALADEKT------VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred HHHcCCE---EEEecCCcccCCccCHHHHHHHhCcCc------cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4456776 888888654456899999999886543 37888889999999865 88999999999999999
Q ss_pred ecccccccccChhhhhhhcCCC-CCC-eeeeecccccccc-cceEEEEEeCc-hhHHh-hhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPEFRHFIDGVE-GAD-SFSLNAHKWFFTT-LDCCCLWVKDP-SDLVN-SLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~-~~D-~~~~~~hK~l~~p-~g~g~l~v~~~-~~~~~-~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|++++......+.+.. ...+. ... .+..|..|.++.| .-+|++++.++ ..+.. .......+.....
T Consensus 208 De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~-------- 278 (403)
T TIGR01265 208 DEIYGHMVFGDAPFIP-MASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRIL-------- 278 (403)
T ss_pred EccccccccCCCCccc-hhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhc--------
Confidence 9998755432211111 11111 112 4557999987666 45788777543 21111 1000000000000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
+...+....+..+++......+++..++..++.+.+.+.|+.++++.+..+..+..+.+.++.....
T Consensus 279 -------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~------ 345 (403)
T TIGR01265 279 -------GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFP------ 345 (403)
T ss_pred -------CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccC------
Confidence 0000111222223322223456677778888888999999888788765455566666666432000
Q ss_pred hccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+. ....++.+.+. +.|.....+......+++|+++.. .++.++..++.|.+++++
T Consensus 346 -------~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~---~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 346 -------EI----KDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV---PESMLEEACSRIKEFCER 401 (403)
T ss_pred -------CC----CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 00 00134556554 456544444434446799999663 477888888888877654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.5e-16 Score=137.09 Aligned_cols=171 Identities=14% Similarity=0.110 Sum_probs=111.0
Q ss_pred eecCCCCCCEEEEecCCCCC----cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSS----YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~----~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v 79 (310)
.+.|+. +++++++.++. +.+|++++++++++..+ +.+++++++ |.+|.+.|+++|+++|+++|++++|
T Consensus 117 ~~~g~~---~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~----~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~liv 188 (294)
T cd00615 117 VLSGAV---PVYLKPERNPYYGIAGGIPPETFKKALIEHPD----AKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLV 188 (294)
T ss_pred HHCCCE---EEEecCccCcccCcCCCCCHHHHHHHHHhCCC----ceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEE
Confidence 345655 88888765432 37999999999976422 456777765 6799999999999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+||+++....+....... ..++|+++.|+||++++|.++|++++++.......+..... +
T Consensus 189 DeA~~~~~~~~~~~~~~~~-~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~-~----------------- 249 (294)
T cd00615 189 DEAHGAHFRFHPILPSSAA-MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALN-L----------------- 249 (294)
T ss_pred ECcchhhhccCcccCcchh-hcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHH-H-----------------
Confidence 9999865433222111111 12699999999999998888888888765211111110000 0
Q ss_pred eccCCC-c-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHc
Q 046506 160 ITLSRR-F-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVG 202 (310)
Q Consensus 160 ~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~ 202 (310)
++.+.+ + ...++..++..+..++ ++++++..++++++++.|.
T Consensus 250 ~~ttsps~~~~asl~~a~~~~~~~g-~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 250 HQSTSPSYLILASLDVARAMMALEG-KELVEELIELALYARQEIN 293 (294)
T ss_pred HCCCCcHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHh
Confidence 111111 1 2234444554443344 4467888889999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-14 Score=130.50 Aligned_cols=184 Identities=16% Similarity=0.129 Sum_probs=116.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|++. +.+|++.+++|++|.+.|+++|+++|+++|++++||++++.+....+. . .++|+
T Consensus 131 ~d~e~le~ai~~~------tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~------~-~gaDi 197 (425)
T PRK06084 131 DDIAALEALIDER------TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPF------E-HGADI 197 (425)
T ss_pred CCHHHHHHHhccC------CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChh------h-cCCCE
Confidence 4789999999765 347888899999999999999999999999999999999865442221 1 25999
Q ss_pred eeeecccccccccc-eEEEEEeCchh-HHhh------h-ccCCccccccccccccccCCC-----CceeccCCCcchHHH
Q 046506 106 FSLNAHKWFFTTLD-CCCLWVKDPSD-LVNS------L-STNPEYLKNKATESKQVVDYK-----DWQITLSRRFRSLKL 171 (310)
Q Consensus 106 ~~~~~hK~l~~p~g-~g~l~v~~~~~-~~~~------~-~~~~~y~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 171 (310)
++.|+||+++++.. .|++++.+... .... + ..+|.|.........+..... ......+.+.....+
T Consensus 198 vv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a 277 (425)
T PRK06084 198 VVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNA 277 (425)
T ss_pred EEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999987633 34444543210 0010 0 112222211000000000000 000011222334444
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----------------C--ceEEEEEEcC
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----------------H--FAVVCFRVSP 224 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----------------~--~~~v~~~~~~ 224 (310)
|..+ .|...+..++++..+++..+.+.|+++|++.-+.-| . .++++|.+.+
T Consensus 278 ~l~l--rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~ 346 (425)
T PRK06084 278 FLIL--QGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKG 346 (425)
T ss_pred HHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecC
Confidence 5444 466889999999999999999999999988643211 2 4588888865
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=132.77 Aligned_cols=261 Identities=12% Similarity=0.017 Sum_probs=161.3
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+|+.+|++ ++..+..+++. .+++++++. . + -|+++|+.|.+|...|+++|+..+ ++++++||+
T Consensus 100 ia~~~g~~--~v~~l~~~~g~--~~~~~~ve~----~-~------~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDa 162 (374)
T TIGR01365 100 VTKQLKLP--DVRVLEAEYGK--LPDLKKVDF----K-N------DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDA 162 (374)
T ss_pred HHHhcCCC--CcEEEcCCCCC--CCCHHHcCC----C-C------CEEEecCCCchheecccccccccc--CCCcEEEEc
Confidence 34557772 27777777754 789999983 1 1 267999999999999998766433 589999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccc-cccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKA-TESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~ 160 (310)
..+.+..+++.. .+|++..+.+|+|++|.|.+++.++++.+ .+.-... .|..... ........+.....
T Consensus 163 vSs~g~~~l~~d--------~iDv~~tgsQK~L~~ppGls~v~vs~~Al-~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~ 232 (374)
T TIGR01365 163 TSAAFAQDLDYH--------KLDVVTFSWQKVLGGEGAHGMLILSPRAV-ARLESYT-PAWPLPKIFRLTKGGKLNKKIF 232 (374)
T ss_pred cchhcCCCCChh--------HCcEEEEechhccCCCCceEEEEECHHHH-HHHhhcC-CCCCChhhhccccccchhhhhh
Confidence 998888877642 39999999999999999999999988854 3322111 1211000 00000000000000
Q ss_pred ccCCCc--chHHHHH---HHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-C--Cce-EEEEEEcCCcchhh
Q 046506 161 TLSRRF--RSLKLWF---VLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-R--HFA-VVCFRVSPSAVMDK 230 (310)
Q Consensus 161 ~~~~~~--~~~~~~~---~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~--~~~-~v~~~~~~~~~~~~ 230 (310)
.+..++ ....+++ +++.+..+ |++++.+|+.++++.+++.++++..+.++.. + +++ ++++.+.+..+.
T Consensus 233 ~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~-- 310 (374)
T TIGR01365 233 EGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAID-- 310 (374)
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccc--
Confidence 111222 1233333 34334454 7999999999999999999999843777642 1 233 345655432100
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..+++.-..+..++.+.+.++|.....+........+||..+ ...+++|++.+++.|.-+-
T Consensus 311 ---------~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~-G~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 311 ---------ALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCG-ATVEKSDLECLCPWLDWAF 371 (374)
T ss_pred ---------ccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecC-CcCCHHHHHHHHHHHHHHH
Confidence 000000011235677778778643332222122478999977 4799999999999997654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-14 Score=128.89 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=115.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++..++|++ ++.||.|++++.+.+.+ |.+|++.... .-...|+++++++|++.|+.|++|.||-+|.+....
T Consensus 144 ~~~y~~d~~-~~~ID~d~l~~~a~~~k-----PklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~ 215 (399)
T PF00464_consen 144 SVPYPVDPD-TGLIDYDELEKLAKEHK-----PKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGL 215 (399)
T ss_dssp EEEEEB-TT-TSSB-HHHHHHHHHHH-------SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS
T ss_pred EEeeeeecC-CCeECHHHHHHHHhhcC-----CCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehhe
Confidence 566788864 56999999999998874 6666554332 234578999999999999999999999888776654
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEe-------------CchhHHhhh--ccCCccccccccccccccCCCC
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVK-------------DPSDLVNSL--STNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~-------------~~~~~~~~~--~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
+... +.++|+++++.||+|.+|.| |+++.+ +++ +.+.+ ...|.
T Consensus 216 ~~~P---~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~-l~~~I~~avfP~----------------- 273 (399)
T PF00464_consen 216 FPNP---FPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEE-LAEKIDSAVFPG----------------- 273 (399)
T ss_dssp S--G---CCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHH-HHHHHHHHHTTT-----------------
T ss_pred ecCc---cccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHH-HHHHhccccCCC-----------------
Confidence 4322 34699999999999999975 666666 122 11211 11111
Q ss_pred ceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcC
Q 046506 158 WQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSP 224 (310)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~ 224 (310)
.+++-.. ..++++.+++......+.+..++..++|+.|.+.|.+. |++++. ..++.++.+.+.+
T Consensus 274 --~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~ 339 (399)
T PF00464_consen 274 --LQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRS 339 (399)
T ss_dssp --T-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGG
T ss_pred --cccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecc
Confidence 1222222 23455566666556677899999999999999999986 999985 3567788787765
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-14 Score=129.76 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeee
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFS 107 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~ 107 (310)
.++++++|+++ +.+|++++++|++|.+.|+++|+++||++|++++||++|+.+....+. . .++|+++
T Consensus 136 ~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl------~-~GaDivv 202 (394)
T PRK09028 136 GEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPF------E-MGVDISI 202 (394)
T ss_pred HHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCcc------c-cCceEEE
Confidence 47788888765 448999999999999999999999999999999999999876432221 1 2699999
Q ss_pred eecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHH
Q 046506 108 LNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRH 185 (310)
Q Consensus 108 ~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (310)
.|+|||++++.+ .|++ +.++....+..... .+ .|....+..+|..+ .|...+.-
T Consensus 203 ~S~tK~l~Gh~d~~~G~~-~~~~~~~~~l~~~~-~~--------------------~G~~~~p~~a~l~~--rgl~TL~l 258 (394)
T PRK09028 203 QAATKYIVGHSDVMLGTA-TANEKHWDQLREHS-YL--------------------MGQCTSPDDVYLAM--RGLRTLGV 258 (394)
T ss_pred EeCCeEecCCCCEEEEEE-ECCHHHHHHHHHHH-Hh--------------------cCCCCCHHHHHHHH--cccCcHHH
Confidence 999999998832 2333 44443332221100 00 01112344555544 36678999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeE-EecC-----C-----------CceEEEEEEcC
Q 046506 186 FLRSHVNMAKLFERLVGSDKRFE-VVFP-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 186 ~~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~-----------~~~~v~~~~~~ 224 (310)
++++..+++..+.+.|++.|.+. |.-| | ..++++|.+..
T Consensus 259 R~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 314 (394)
T PRK09028 259 RLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQ 314 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECC
Confidence 99999999999999999999885 4322 1 14688998863
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=132.16 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
|+++++++|++. +.+|++++.+|++|.+.|+++|+++|+++|+++++|++|+.+....+ .. .++|++
T Consensus 137 d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~p------l~-~gaDiv 203 (427)
T PRK05994 137 DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRP------IE-HGADIV 203 (427)
T ss_pred CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCc------cc-cCCcEE
Confidence 689999999764 44888899999999999999999999999999999999976543221 11 269999
Q ss_pred eeecccccccccc-eEEEEEeCch-hHHhhhccCCcccccccccccc--ccC-CC----------CceeccCCCcchHHH
Q 046506 107 SLNAHKWFFTTLD-CCCLWVKDPS-DLVNSLSTNPEYLKNKATESKQ--VVD-YK----------DWQITLSRRFRSLKL 171 (310)
Q Consensus 107 ~~~~hK~l~~p~g-~g~l~v~~~~-~~~~~~~~~~~y~~~~~~~~~~--~~~-~~----------~~~~~~~~~~~~~~~ 171 (310)
+.|+||+++++.+ .|++++.... .+.. ....+++........+ ..+ .. ......|.......+
T Consensus 204 v~S~tK~lgg~~~~~gG~v~~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A 281 (427)
T PRK05994 204 VHSLTKFLGGHGNSMGGIIVDGGTFDWSK--SGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNA 281 (427)
T ss_pred EEcCccccCCCCCcEEEEEEeCCcccccc--ccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999998765 5555554221 0000 0000111110000000 000 00 000011222334444
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEV 209 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v 209 (310)
|..+ .+...+..++++.++++.++.+.|++.|++.-
T Consensus 282 ~l~~--~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~ 317 (427)
T PRK05994 282 FLIL--TGIETLPLRMQRHSDNALAVAEWLKGHPKVSW 317 (427)
T ss_pred HHHH--cCcccHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 4443 46688999999999999999999999998864
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-14 Score=129.66 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
|+++++++|++. +.+|.+.+.+|++|.+.|+++|+++|+++|+++++|++++.+....+ . . .++|++
T Consensus 139 d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~----l--~-~g~Di~ 205 (403)
T PRK07503 139 DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP----L--E-LGADLV 205 (403)
T ss_pred CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc----h--h-hCCCEE
Confidence 689999999764 34788888999999999999999999999999999999975533211 1 1 258999
Q ss_pred eeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHH
Q 046506 107 SLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLR 184 (310)
Q Consensus 107 ~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (310)
+.|++|+++++.+ .|+++ .+++...+........ ..+-+...+..|..++ +.+.+.
T Consensus 206 v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~~~~-------------------~~g~~~s~~~a~l~l~--~L~tl~ 263 (403)
T PRK07503 206 VHSATKYLGGHGDITAGLVV-GGKALADRIRLEGLKD-------------------MTGAVMSPFDAFLLMR--GLKTLA 263 (403)
T ss_pred EccccccccCCCceeEEEEE-cCHHHHHHHHhhhHHh-------------------CcCCCCCHHHHHHHHc--CcchHH
Confidence 9999999998754 56555 5555443321100000 0011223344444443 557788
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 185 HFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 185 ~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
.++++..++++.+.+.|++.|.+..+
T Consensus 264 ~r~~~~~~na~~~a~~L~~~p~v~~V 289 (403)
T PRK07503 264 LRMDRHCASAQAVAEWLARHPAVELV 289 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 88999999999999999998887643
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=128.53 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=116.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++|+++++++ +.+|.+.+.+|++|.+.|+++|+++|+++|++++||++|+.+....+ . . .++|+
T Consensus 133 ~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~p----l--~-~gaDi 199 (405)
T PRK08776 133 TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKP----L--E-FGADL 199 (405)
T ss_pred CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCc----c--c-ccCCE
Confidence 4789999998654 44788889999999999999999999999999999999976542211 1 1 25899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|+||++++|.+ .|+++.++++..++..... .+. +-....+..|..+ .+.+++
T Consensus 200 vv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~-~~~--------------------g~~~s~~~a~l~~--~gl~tl 256 (405)
T PRK08776 200 VLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA-NAL--------------------GLTGSPFDAFLTL--RGLRTL 256 (405)
T ss_pred EEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH-Hhc--------------------CCCCCHHHHHHHH--hhhCcH
Confidence 99999999998865 4666666665433221100 000 0011344455444 356788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
+.++++..+++..+.+.|++.|.+.-+.-| ..++++|.+.+
T Consensus 257 ~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 257 DARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 999999999999999999999988643211 14588898864
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=128.42 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
|+++++++|+++ +.+|++.+++|++|.+.|+++|+++|+++ |+++++|++++.+....+. + .++|
T Consensus 138 d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l------~-~g~D 204 (400)
T PRK06234 138 NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL------Q-LGAD 204 (400)
T ss_pred CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch------h-hCCc
Confidence 689999999765 34888899999999999999999999997 9999999999766432221 1 1589
Q ss_pred eeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 105 SFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+++.|++|+++++.. .|+++.+ ++.+.........+.. +........|..++ +...
T Consensus 205 ivv~S~sK~l~g~g~~~gG~v~~~-~~~~~~l~~~~~~~~~-------------------g~~l~p~~a~l~~~--~l~t 262 (400)
T PRK06234 205 VVVHSATKYLNGHGDVIAGFVVGK-EEFINQVKLFGIKDMT-------------------GSVIGPFEAFLIIR--GMKT 262 (400)
T ss_pred EEEeeccccccCCCCceeEEEEec-HHHHHHHHHHHHHHhc-------------------CCCCCHHHHHHHHh--ccCc
Confidence 999999999997753 4665544 4443322110001000 11123334444443 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
++.++++..++++++.+.|++.|.+.-+. | | ..++++|.+.+
T Consensus 263 l~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~ 321 (400)
T PRK06234 263 LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG 321 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence 78899999999999999999988875332 2 1 24578888864
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=129.31 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=103.0
Q ss_pred cEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce--EE
Q 046506 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC--CC 122 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--g~ 122 (310)
+.+|.+...+|++|.+.|+++|+++|+++|++++||++|+.+....+ .+ .++|+++.|+|||+++|.|+ |+
T Consensus 133 t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p-----~~--~g~Divv~S~sK~l~G~~g~~~G~ 205 (366)
T PRK07582 133 ADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRP-----LE--LGADLVVASDTKALTGHSDLLLGY 205 (366)
T ss_pred ceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCc-----hh--cCCcEEEecccccccCCCCeeEEE
Confidence 34777888899999999999999999999999999999853221111 11 25899999999999988774 66
Q ss_pred EEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHc
Q 046506 123 LWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVG 202 (310)
Q Consensus 123 l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~ 202 (310)
++.++++...+..... .+... .......|.+++ +...++.++++..++++.+.+.|.
T Consensus 206 v~~~~~~l~~~l~~~~-~~~g~--------------------~~~~~~a~l~~r--~l~tl~~R~~~~~~na~~la~~L~ 262 (366)
T PRK07582 206 VAGRDPELMAAVERWR-LLAGA--------------------IPGPFEAWLAHR--SLGTLGLRFARQCANALAVAELLA 262 (366)
T ss_pred EEcCcHHHHHHHHHHH-HHhCC--------------------CCCHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 6665554432221100 11100 112344454444 445688889999999999999999
Q ss_pred CCCCeEEec------CC-----------CceEEEEEEc
Q 046506 203 SDKRFEVVF------PR-----------HFAVVCFRVS 223 (310)
Q Consensus 203 ~~~~~~v~~------~~-----------~~~~v~~~~~ 223 (310)
+.|.+.-+. .| ..++++|.+.
T Consensus 263 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 263 GHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred hCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 999886433 12 3568899885
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-14 Score=129.18 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=106.6
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|++++ .+|++.+++|++|.+.|+++|+++|+++|++++||++++.+....+ . . .++|+
T Consensus 122 ~d~~~l~~ai~~~t------klV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p-----~-~-~g~Di 188 (377)
T PRK07671 122 SNLEEVEEAIRPNT------KAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSP-----I-S-LGADI 188 (377)
T ss_pred CCHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCCh-----h-h-hCCeE
Confidence 37899999997653 4888889999999999999999999999999999999875433211 1 1 25899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|++|++++|.+ .|+++++++....+..... .+. +........|..++ +...+
T Consensus 189 vv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~-~~~--------------------g~~~~~~~a~l~~~--~l~tl 245 (377)
T PRK07671 189 VLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ-NST--------------------GGILGPQDSWLLLR--GLKTL 245 (377)
T ss_pred EEecCcccccCCccceeEEEEeCcHHHHHHHHHHH-Hhh--------------------cCCCCHHHHHHHHc--CcChH
Confidence 99999999998864 4556666654433321110 111 11112344444443 44567
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
..++++.+++++.+.+.|++.|++.-+
T Consensus 246 ~~R~~~~~~na~~la~~L~~~~~v~~v 272 (377)
T PRK07671 246 GIRMEEHETNSRAIAEFLNNHPAVNKV 272 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 779999999999999999999988543
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-14 Score=129.17 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=105.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++++++ +.+|.+.+++|++|.+.|+++|+++||++|++++||++++.+....+ .. .++|+
T Consensus 122 ~d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p------~~-~gaDi 188 (380)
T PRK06176 122 SDLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP------LL-LGADI 188 (380)
T ss_pred CCHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCc------cc-cCCCE
Confidence 4789999998764 34788889999999999999999999999999999999976533211 11 26999
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
+++|+||++++|.+ .|++..++++...+..... .+ .+........|..+ .|...+
T Consensus 189 vv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~-~~--------------------~G~~~~~~~~~l~~--~gl~tl 245 (380)
T PRK06176 189 VVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQ-NA--------------------IGGVLGPQDSWLLQ--RGIKTL 245 (380)
T ss_pred EEecCceeccCCccceeeEEEecHHHHHHHHHHHH-HH--------------------hcCCCCHHHHHHHH--hccCcH
Confidence 99999999998764 5555555554332221000 00 01111222334333 355677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
..++++.++++..+.+.|++.|.+.-+
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~p~v~~v 272 (380)
T PRK06176 246 GLRMEAHQKNALCVAEFLEKHPKVEKV 272 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEE
Confidence 889999999999999999998888543
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-14 Score=128.42 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=112.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|+++ +.+|.+.+++|++|.+.++++|+++|++||+++++|.+++.+....+. . .++|+
T Consensus 124 ~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-----~--~g~di 190 (366)
T PRK08247 124 ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-----E--EGADI 190 (366)
T ss_pred CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-----h--cCCcE
Confidence 3789999999765 348888889999999999999999999999999999999654432221 1 25899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|++|+++++.+ .|++..+++....+..... .+. +........|.+++ +...+
T Consensus 191 ~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-~~~--------------------g~~~s~~~a~l~~~--~l~tl 247 (366)
T PRK08247 191 VIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-NAA--------------------GAVLSPFDSWLLIR--GMKTL 247 (366)
T ss_pred EEeecceeccCCCceeeeEEecChHHHHHHHHHHH-Hhc--------------------CCCCChHHHHHHHh--ccCcH
Confidence 99999999997654 3444443343332221100 000 00112233444443 44567
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~ 224 (310)
..++++..++++.+.+.|++.|++..+. |+..++++|.+..
T Consensus 248 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~ 289 (366)
T PRK08247 248 ALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQD 289 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECC
Confidence 7888888999999999999999987443 4478888997753
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=127.61 Aligned_cols=246 Identities=14% Similarity=0.140 Sum_probs=145.6
Q ss_pred ceecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++..|.. ++.+|++. .+.+.+|++++++++++. +.++++++.+|++|.+.+ +++|+++|+++|++++
T Consensus 124 ~~~~g~~---~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii 194 (380)
T PRK06225 124 ASRFGAE---VIEVPIYSEECNYKLTPELVKENMDEN------TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLL 194 (380)
T ss_pred HHHhCce---EEeeccccccCCccCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEE
Confidence 3456666 88888742 224689999999998754 346777788899999765 8899999999999999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
+|++++.+......... .. .....+..+++|+++.| ..+|+++.+ +..++..... .....
T Consensus 195 ~De~y~~~~~~~~~~~~-~~--~~~~i~~~s~SK~~g~~G~RiG~i~~~-~~l~~~~~~~----~~~~~----------- 255 (380)
T PRK06225 195 HDCTYRDFAREHTLAAE-YA--PEHTVTSYSFSKIFGMAGLRIGAVVAT-PDLIEVVKSI----VINDL----------- 255 (380)
T ss_pred EehhHHHHhccCCchhh-cC--CCCEEEEeechhhcCCccceeEEEecC-HHHHHHHHHH----Hhccc-----------
Confidence 99998533211110000 00 12345667889999644 236888764 4343322110 00000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe-cCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV-FPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
..+ ......+..+++. ....+++..+...++.+.+.+.|++++++.+. .++..+.+.+.+.+...
T Consensus 256 ---~~~-~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--------- 321 (380)
T PRK06225 256 ---GTN-VIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGI--------- 321 (380)
T ss_pred ---CCC-HHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccC---------
Confidence 000 0111112222221 22334445555566677788888877775432 24455666665543211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.|.+.|. ++.+... .+.+.+|+|+. .++|+++.++++|+++++.++.
T Consensus 322 -----~-------~~~l~~~l~~~gi-~v~~g~~~~~~~~~~~iR~s~~---~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 322 -----D-------PEDLVEYLLERKI-FVRQGTYTSKRFGDRYIRVSFS---IPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred -----C-------HHHHHHHHHHCCE-EEcCCcccCcCCCCceEEEEeC---CCHHHHHHHHHHHHHHHHHhhc
Confidence 0 1356677777764 4443321 13468999954 3689999999999999987764
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=127.72 Aligned_cols=242 Identities=12% Similarity=-0.005 Sum_probs=148.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++++.+.+|++++++++.+. +.+++++.++|++|.+.+ +++|+++|++||+++++
T Consensus 134 ~~~~G~~---~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 134 IQMAGAT---SYYMPLKKENDFLPDLELIPEEIADK------AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred HHhcCCE---EEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 4566776 99999987555789999999988653 347777778999999988 77899999999999999
Q ss_pred ecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++............. .....-.++..|.+|.++.| .-+|+++. ++..+....... .+....
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~~~~~~~~-~~~~~~----------- 271 (399)
T PRK07681 205 DFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQFK-SNTDYG----------- 271 (399)
T ss_pred eccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEec-CHHHHHHHHHHH-hhcccC-----------
Confidence 999975443221111111 11111235667999998744 33777764 454443221111 000000
Q ss_pred CceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
...+...++...+ +...+++..+...++.+.+.+.|.+. ++++..+..+..+.+.+.+..
T Consensus 272 ---------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~~~-------- 333 (399)
T PRK07681 272 ---------VFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPKGW-------- 333 (399)
T ss_pred ---------CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCCCC--------
Confidence 0111112222222 23455666677778888899999886 777654545555555554310
Q ss_pred hccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+ ..++...+.+ .|.....+.... +.+++|+++. .++++++.+++.|++.+
T Consensus 334 -------~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~~~~~l~~l~~~~ 386 (399)
T PRK07681 334 -------T-------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV---QDEEVLQQAVENIRNSG 386 (399)
T ss_pred -------C-------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec---CCHHHHHHHHHHHHHhc
Confidence 0 1356666666 554433332222 3468999966 35899999999998843
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=125.68 Aligned_cols=243 Identities=9% Similarity=0.077 Sum_probs=145.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|+++.+.+.+|++++++++++. +.++++++++|++|.+.+ +++|+++|++||+++++
T Consensus 121 ~~~~g~~---v~~v~~~~~~~~~~d~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 121 PESLGAE---VDYWQLKEENGWLPDLDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred HHHcCCE---EEEEecccccCCCCCHHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3456776 99999987545678999999988654 347888899999999988 89999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|+++........ ...... ...-.++..|.+|.++.| .-+|+++. ++..+....... .+...
T Consensus 192 De~y~~l~~~~~-~~s~~~-~~~~~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~-~~~~~-------------- 253 (373)
T PRK07324 192 DEVYRPLDEDGS-TPSIAD-LYEKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYR-DYTMI-------------- 253 (373)
T ss_pred EccccccccCCC-CCChhh-ccCCEEEEecchhhcCCccceeEEEec-CHHHHHHHHHHh-CcEEe--------------
Confidence 999854332111 111111 111135567999998755 23577765 454443221111 11000
Q ss_pred eeccCCCcchHHHHHHHHHh-C-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 159 QITLSRRFRSLKLWFVLRNY-G-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
+ ...+..+++...+ . ...++...+...++.+.+.+.|.+.+++....+.......+.+....
T Consensus 254 ---~---~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~~---------- 317 (373)
T PRK07324 254 ---C---AGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDM---------- 317 (373)
T ss_pred ---c---CChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCCC----------
Confidence 0 0112222222222 1 22345555666677778888888777777664433333344443210
Q ss_pred cccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+++. +.|.....+......+++|+|+. ++++.++..++.|++.+++
T Consensus 318 -----~-------~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~---~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 318 -----P-------SEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC---CDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred -----C-------HHHHHHHHHHhcCEEEECccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 0 134566655 44544444333444579999965 3577888888888776653
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-14 Score=129.02 Aligned_cols=174 Identities=12% Similarity=0.133 Sum_probs=120.9
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++. .|+++++++|++++ .+|++.+++|++|.+.|+++|+++|+++|++++||++++
T Consensus 132 ~~G~~---v~~vd~-------~d~~~l~~ai~~~t------klV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 132 RWGVE---TVFVDG-------EDLSQWEEALSVPT------QAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HcCcE---EEEECC-------CCHHHHHHhcCcCc------eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 34555 666653 37899999998754 488889999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+....+. . .++|+++.|+||+++++.. .|+++.+ +..+...+. .+....
T Consensus 196 ~~~~~~~~------~-~gaDivv~S~tK~l~g~g~~~gG~v~~~-~~~~~~~l~---~~~~~~----------------- 247 (403)
T PRK07810 196 TPLLQRGL------P-LGADVVVYSGTKHIDGQGRVLGGAILGD-REYIDGPVQ---KLMRHT----------------- 247 (403)
T ss_pred ccccCChh------h-cCCcEEEccCCceecCCcCceeEEEEeC-hHHHHHHHH---HHHHHh-----------------
Confidence 66443221 1 1589999999999987543 4555544 433322110 011100
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
+........|..++ +...+..++++..+++.++.+.|++.|++.-+. | | ..++++|.+..
T Consensus 248 g~~~s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 248 GPALSAFNAWVLLK--GLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred CCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 11123344444443 567889999999999999999999999886432 2 2 25688898864
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=125.90 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=139.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.++ ++.+|++++++.+++. +.++++++++|++|.+.|++++.++|+++|+++++|++
T Consensus 128 ~~~~g~~---~~~~~~~~--~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~ 196 (361)
T PRK00950 128 AKAHGAK---PVYAKREE--DFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEA 196 (361)
T ss_pred HHHcCCE---EEEeecCC--CCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECc
Confidence 3456766 88888664 3589999999998643 34677788999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
|+... . ........... --++..|.+|.++.| .-+|+++. ++............+.
T Consensus 197 y~~~~-~-~~~~~~~~~~~-~vi~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~------------------- 253 (361)
T PRK00950 197 YVEFA-E-YDYTPLALEYD-NLIIGRTFSKVFGLAGLRIGYGFV-PEWLIDYYMRAKTPFS------------------- 253 (361)
T ss_pred hhhhC-c-cchHHHHHhcC-CEEEEEeehHhhcCchhhcchhcC-CHHHHHHHHHhcCCCC-------------------
Confidence 96443 1 11111111111 124557899998755 23566654 3433322211111110
Q ss_pred cCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 162 LSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
...+...+++..+. .+.+++..++..++.+++.+.|. +.+. ++..+.+.+.+.+.+
T Consensus 254 ----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~~~~-------------- 310 (361)
T PRK00950 254 ----LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVTPMT-------------- 310 (361)
T ss_pred ----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECCCCC--------------
Confidence 01222233333332 23455666666666666666654 4443 456666766663211
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+.|.....+..+. +.+++|+|+. +++++++++++|++++
T Consensus 311 ---------~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~~il 360 (361)
T PRK00950 311 ---------AKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILKEIV 360 (361)
T ss_pred ---------HHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHHHHh
Confidence 1456777777764433323222 3568999954 5779999999998864
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=126.60 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=116.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++++|+++ +.+|++..++|++|.+.|+++|+++|+++|+++++|++++.+....+. . .++|+
T Consensus 124 ~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl------~-~gaDi 190 (382)
T TIGR02080 124 GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL------A-LGADL 190 (382)
T ss_pred CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch------h-hCCCE
Confidence 4789999999764 348888899999999999999999999999999999999765432221 1 15899
Q ss_pred eeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.|++|+++++.+ .|++.+++++...+..... .+.+ .....+..|..++ +.+.+
T Consensus 191 vv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~-~~~g--------------------~~~sp~~a~l~lr--~l~tl 247 (382)
T TIGR02080 191 VLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA-NNLG--------------------VTGGAFDSYLTLR--GLRTL 247 (382)
T ss_pred EEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH-HccC--------------------CCCCHHHHHHHHc--ccchH
Confidence 99999999998766 6666666665433221110 1111 1123344555544 56788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
..++++..+++..+.+.|++.|.++-+. | | ..++++|.+.+
T Consensus 248 ~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 248 VARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 8889999999999999999999886432 2 1 14588898864
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-14 Score=128.71 Aligned_cols=173 Identities=16% Similarity=0.249 Sum_probs=117.4
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
.+|+. +++++.+ |++++++++++. +.+|++..++|++|.+.|+++|+++|+++|++++||++++
T Consensus 116 ~~g~~---v~~v~~~-------d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 116 RFGIE---VSFVDPT-------DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred HhCCE---EEEECCC-------CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 34555 6666543 578898888654 4588888999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
.+....+ . . .++|+++.|+||+++++. ..|++++.++..++.... +... .+
T Consensus 180 ~~~~~~p----l--~-~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~----~~~~-----------------~g 231 (380)
T TIGR01325 180 TPVLQQP----L--K-LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAV----YLRH-----------------TG 231 (380)
T ss_pred ccccCCc----h--h-hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHH----HHHh-----------------hC
Confidence 5433211 1 1 158999999999999874 334444555544332211 1000 01
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC------C-----------CceEEEEEEc
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP------R-----------HFAVVCFRVS 223 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~------~-----------~~~~v~~~~~ 223 (310)
.......+|.+++ +...+..++++..++++++.+.|+++|++.-+.- | ..++++|.+.
T Consensus 232 ~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 232 PAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred CCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 1122233444443 5567788999999999999999999988764321 1 1458888886
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=126.27 Aligned_cols=159 Identities=14% Similarity=0.224 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeee
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSL 108 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~ 108 (310)
++++++|+++ +.+|++++++|++|.+.||++|+++|+++|++++||++|+.+....+. . .++|+++.
T Consensus 126 e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl------~-~gaDivv~ 192 (377)
T TIGR01324 126 EDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL------E-HGVDISIQ 192 (377)
T ss_pred HHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc------c-cCceEEEe
Confidence 7888888765 448999999999999999999999999999999999999877653221 1 26999999
Q ss_pred ecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHH
Q 046506 109 NAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHF 186 (310)
Q Consensus 109 ~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (310)
|+|||++++.+ .|+++ .+++.+.+.... .+..+ ....+...|..++ +.+.+..+
T Consensus 193 S~tK~l~G~~d~~gG~v~-~~~~~~~~l~~~--~~~~G-------------------~~l~p~~a~~~~r--gl~tl~~R 248 (377)
T TIGR01324 193 AGTKYLVGHSDIMIGTVV-ANARTWDQLREH--SYLMG-------------------QMVDADDAYTTLR--GLRTLGVR 248 (377)
T ss_pred cCceeccCCCCceEEEEE-eCHHHHHHHHHH--HHHhC-------------------CCCCHHHHHHHHh--hhhhHHHH
Confidence 99999998865 35454 444333322110 11111 1123344555554 45678888
Q ss_pred HHHHHHHHHHHHHHHcCCCCeE-EecC-----C-----------CceEEEEEEcC
Q 046506 187 LRSHVNMAKLFERLVGSDKRFE-VVFP-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 187 ~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~-----------~~~~v~~~~~~ 224 (310)
+++.++++..+.+.|++.|.+. +.-| | ..++++|.+.+
T Consensus 249 ~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~ 303 (377)
T TIGR01324 249 LKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQR 303 (377)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECC
Confidence 9999999999999999988884 4322 1 25688898864
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=126.91 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
|+++++++|++. ++.+|++.+.+|++|.+.|+++|+++|++||++++||.+++.... .+. .+ ++|++
T Consensus 151 d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~-~~~------~~-g~div 217 (418)
T PLN02242 151 DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL-SPA------RL-GADVV 217 (418)
T ss_pred CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC-CHH------Hc-CCcEE
Confidence 789999999653 145888999999999999999999999999999999999953322 111 11 48999
Q ss_pred eeecccccccccce-EEEEEeCchhHHhhhccCCc-cccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHH
Q 046506 107 SLNAHKWFFTTLDC-CCLWVKDPSDLVNSLSTNPE-YLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLR 184 (310)
Q Consensus 107 ~~~~hK~l~~p~g~-g~l~v~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (310)
+.|++|+++++... |.+++.+++.+......... +. ..+. ......+| +...+...+.
T Consensus 218 v~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~-----------------~~g~-~~~~~~A~--l~~~~l~tl~ 277 (418)
T PLN02242 218 VHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALM-----------------LLGP-TMNPKVAF--ELSERLPHLS 277 (418)
T ss_pred EEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhh-----------------ccCC-CCCHHHHH--HHHcCCCcHH
Confidence 99999999877543 33444555444332211100 00 0111 11222223 3334555777
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 185 HFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 185 ~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
.++++..++++++.+.|.++ ++++.
T Consensus 278 ~r~~~~~~~a~~la~~L~~~-~~~V~ 302 (418)
T PLN02242 278 LRMKEHCRRAMEYAKRMKEL-GLKVI 302 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 88899999999999999998 57776
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-13 Score=126.21 Aligned_cols=248 Identities=11% Similarity=0.105 Sum_probs=149.8
Q ss_pred ceecCCCCCCEEEEecC---CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcE
Q 046506 3 AQIVGIDVKNFRAIKTT---KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIW 76 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~---~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~ 76 (310)
++.+|.. ++.|+++ +++++.+|+++|++++++. +.++++++++|++|.+.+ +++|+++|++||++
T Consensus 143 ~~~~g~~---v~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~ 213 (405)
T PRK06207 143 VEFFEGE---MVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGAT 213 (405)
T ss_pred HHHcCCE---EEEEeccccCcccCCCcCHHHHHHhhhhc------CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 3456666 8888876 2234689999999999764 347888889999999987 77899999999999
Q ss_pred EEeecccccccccChhhhhhhcCCC-CCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccc
Q 046506 77 VHVDAAYAGSACICPEFRHFIDGVE-GAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~~~~~~-~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
+++|.+++-..+....+.. ...+. ..| ++..|+.|.++.| .-+|+++. ++..+....... .+.....
T Consensus 214 iI~De~Y~~~~~~~~~~~~-~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~-~~~l~~~~~~~~-~~~~~~~------ 284 (405)
T PRK06207 214 VIVDQLYSRLLYDGTSYTH-LRALPIDPENVITIMGPSKTESLSGYRLGVAFG-SPAIIDRMEKLQ-AIVSLRA------ 284 (405)
T ss_pred EEEeccccccccCCCCCCc-hhcCCCCcCcEEEEecchhhccCcccceEEEEc-CHHHHHHHHHHH-hHhccCC------
Confidence 9999998754432211111 11110 011 5778999999855 22777754 444433321111 1110000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
..+....+...++ -+...+++..++..+..+.+.+.|.+++++++..+..+..+.+.+++...
T Consensus 285 -----------~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~----- 347 (405)
T PRK06207 285 -----------AGYSQAVLRTWFS-EPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAV----- 347 (405)
T ss_pred -----------CHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCC-----
Confidence 0011112222221 12234677777777888889999988778876534345556665543110
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.+. +.|.....+... .+.+++|+|+.. ++++++..++.|.+.+++.
T Consensus 348 ---------~-------~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~---~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 348 ---------S-------LHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ---DHAAAVAAAERIAQLIERY 403 (405)
T ss_pred ---------C-------HHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHh
Confidence 0 134666665 455544433322 235799999763 5788888888888877654
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-13 Score=124.33 Aligned_cols=242 Identities=13% Similarity=0.111 Sum_probs=145.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
...|+. ++++|.++ ++.+|+++|+++|++. +.++++++++|++|.+.| +++|+++|++||+++++|
T Consensus 131 ~~~g~~---~~~v~~~~--~~~~d~~~l~~~i~~~------~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~D 199 (389)
T PRK05957 131 TMAGCQ---PILVPTDD--NYQLQPEAIEQAITPK------TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISD 199 (389)
T ss_pred HhcCCE---EEEeecCC--CCCcCHHHHHHhcCcC------ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence 345666 88898874 4589999999999754 347888889999999988 889999999999999999
Q ss_pred cccccccccChhhhhhhc--CCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 81 AAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
.+++........+..... ....--+++.|..|.++.| | +|++++.+ ..++...... .+.....
T Consensus 200 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlRiG~~~~~~-~~~~~~~~~~-~~~~~~~---------- 266 (389)
T PRK05957 200 EAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA-SWRIGYMVIPI-HLLEAIKKIQ-DTILICP---------- 266 (389)
T ss_pred ccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc-cceeEEEecCH-HHHHHHHHHH-hhcccCC----------
Confidence 998644322111101000 1011225567888988644 5 78887643 3332221111 0000000
Q ss_pred CceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKT 233 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~ 233 (310)
.......+...+ +.+.+++..++..++.+.+.+.|++++++..+.++..+. +.+.+.+. .
T Consensus 267 ----------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~-~------ 329 (389)
T PRK05957 267 ----------PVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD-L------ 329 (389)
T ss_pred ----------CcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCC-C------
Confidence 111122222223 234567777778888888999998877752233555443 33444321 1
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.+.+ .|....++... .+.+++|+|+.. .++++++..++.|.+.++.
T Consensus 330 --------~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 330 --------N-------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA--LQKATAKEGIERLVQGLKT 385 (389)
T ss_pred --------C-------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 0 1456777764 55443333322 224689999763 4677888888877776654
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-14 Score=126.30 Aligned_cols=227 Identities=15% Similarity=0.052 Sum_probs=132.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHH---HHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKP---LCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~---I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.++.++ ++.+|+++|++++++++.....+.+|++.. +.+|++.|.++ |+++|++||++++||+|+..+...
T Consensus 100 ~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~l~n--p~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~ 175 (333)
T PRK10534 100 PQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLSLEN--THNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVV 175 (333)
T ss_pred EEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEEEec--CCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHH
Confidence 55666654 468999999999965311111133555543 33599888665 567899999999999997522110
Q ss_pred --ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcc
Q 046506 90 --CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 167 (310)
Q Consensus 90 --~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (310)
...... . ....|.++++++|.++.+ .|++.+.+++.+.........+.. +-...
T Consensus 176 ~~~~~~~~-~--~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~ 231 (333)
T PRK10534 176 AYGCELKE-I--TQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMTGG-------------------GMRQA 231 (333)
T ss_pred HcCCCHHH-H--HhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHhCC-------------------chhhH
Confidence 111111 1 123577778999988876 564445666554332111110000 00011
Q ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 168 SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
++...+++..+ +...+.+++..+.++++.+.|.++ |+++. ++.++++.+++.+.+
T Consensus 232 ~~~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~~~--------------------- 286 (333)
T PRK10534 232 GILAAAGLYAL--KHNVARLQEDHDNAAWLAEQLREA-GADVM-RQDTNMLFVRVGEEQ--------------------- 286 (333)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhC-CCccC-CCCceEEEEECCchh---------------------
Confidence 12222222222 112344445556678899999987 88876 457887777664311
Q ss_pred HHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.++|.+. .+. ..+|++.+ +.+|+|+++.++++|++++
T Consensus 287 --~~~~~~~l~~~gi~v-~~~-----~~~rl~~~-~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 287 --AAALGEYMRERNVLI-NAS-----PIVRLVTH-LDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred --HHHHHHHHHHcCeee-cCC-----ceEEEEEE-eCCCHHHHHHHHHHHHHHh
Confidence 135667777887544 322 25799854 5689999999999998765
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-13 Score=123.94 Aligned_cols=247 Identities=13% Similarity=0.158 Sum_probs=144.9
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|+. ++.+|.+++ ++.+|+++|++++.+... .+.++++++++|++|.+.+ +++|+++|++||+++++
T Consensus 132 ~~~~g~~---~~~~~~~~~-~~~~d~~~l~~~~~~~~~---~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 132 VNLVGAE---IVEIDTTEN-DFVLTPEMLEKAILEQGD---KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred HHHcCCE---EEEEecCCc-CCcCCHHHHHHHhhccCC---CeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 4566776 899998764 367999999999975311 2457777788999999765 88999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|++++..................--++..|.+|.++.| .-+|+++. +++.+....... .+....
T Consensus 205 D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~-~~~~~~~~~~~~-~~~~~~------------- 269 (391)
T PRK07309 205 DEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFA-PAEFTAQLIKSH-QYLVTA------------- 269 (391)
T ss_pred EccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEe-CHHHHHHHHHHH-hhcccC-------------
Confidence 99987554322111111100011126778999998755 23566654 444443332111 111110
Q ss_pred eeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~~ 235 (310)
...+...++.+.+ +........++..+..+++.+.|.+. ++.+. +|..+. +.+.+++..
T Consensus 270 -------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~p~gg~~~~~~l~~~~--------- 331 (391)
T PRK07309 270 -------ATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-GFKII-KPDGAFYIFAKIPAGY--------- 331 (391)
T ss_pred -------CChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEECCCCC---------
Confidence 0111112222222 22223444556667778888888876 77765 344443 333443210
Q ss_pred ccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESIN-ASGKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..-..++.+.+. +.| +.+.+.. + .+.+++|+++.. ++++++..++.|++.++++
T Consensus 332 -----------~~~~~~~~~~l~~~~g-v~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 332 -----------NQDSFKFLQDFARKKA-VAFIPGAAFGPYGEGYVRLSYAA---SMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred -----------CCCHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHHHHHhh
Confidence 000135565554 445 4444432 2 235799999662 5789999999998887664
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=126.46 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=105.0
Q ss_pred cCHHHHHHHHHH-HHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 26 LSPDSLMAKINS-DVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 26 id~~~Le~~i~~-~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+|+++++++|++ . +.+|++.+.+|++|.+.|+++|+++||++|+++++|++|+.+....+ .. .++|
T Consensus 124 ~d~~~l~~~i~~~~------tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~----l~---~GaD 190 (385)
T PRK08574 124 PSTEDIIEAIKEGR------TKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRP----LR---HGAD 190 (385)
T ss_pred CCHHHHHHhcCccC------ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCh----hh---hCCc
Confidence 357899999876 3 44788899999999999999999999999999999999976643221 11 2589
Q ss_pred eeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 105 SFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+++.|+||++++|.+ .|++++++++...+..... .+. |.....+.+|.+++ +...
T Consensus 191 ivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~-~~~--------------------g~~~~p~~a~l~l~--~l~t 247 (385)
T PRK08574 191 FVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR-RRL--------------------GTIMQPFEAYLVLR--GLKT 247 (385)
T ss_pred EEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH-Hhc--------------------CCCCCHHHHHHHHc--ccCc
Confidence 999999999998865 3546666655433321111 000 11112233344433 5567
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeE
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFE 208 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~ 208 (310)
+..++++..++++++.+.|++.|.+.
T Consensus 248 L~~R~~~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 248 LEVRFERQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 88899999999999999999998885
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-13 Score=124.71 Aligned_cols=248 Identities=14% Similarity=0.094 Sum_probs=156.4
Q ss_pred eecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
.++|.. ++.+|+++. .++.+|+++|+++|++++ .+++++.++|+||.+.+ +++|+++|++||++++.
T Consensus 131 ~~~gg~---~v~v~l~~~~~~f~~d~~~l~~~i~~kt------k~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 131 KLAGGK---PVPVPLDEEENGFKPDLEDLEAAITPKT------KAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred HhcCCE---EEEEeCCcCccCCcCCHHHHHhhcCccc------eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 345555 899998653 268999999999999864 48999999999999866 88899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCC---CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEG---ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~---~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|.++....+....+... ..+.. .-+..-|..|.++.+ --+|+++..++..+ +.+..-..+...
T Consensus 202 DEiY~~l~yd~~~~~s~-~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~-~~~~~~~~~~~~----------- 268 (393)
T COG0436 202 DEIYEELVYDGAEHPSI-LELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELI-AALRKLKSYLTS----------- 268 (393)
T ss_pred ehhhhhcccCCCCcCCH-hhcCCCcceEEEEecccccccccccceeEeecChHHHH-HHHHHHHHhccc-----------
Confidence 99986655443211111 11111 123446899998865 44666665545433 222111111111
Q ss_pred CCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
+...+...++.++++.-. .+..+.+.+...++.+.+.+.|.+++|+.+..+|......|.-.+...
T Consensus 269 ------~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~------- 335 (393)
T COG0436 269 ------CAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL------- 335 (393)
T ss_pred ------CCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCC-------
Confidence 111111222223332111 235667777888999999999999988998875655444443333100
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-C---CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVL-G---GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~---~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++...|.++.++.+.|... + +.+.+|+|+. +++++++..++.+++....
T Consensus 336 -------d-------~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~---~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 336 -------D-------SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA---TSEETLEEALRRLARFLAE 391 (393)
T ss_pred -------C-------HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEe---cCHHHHHHHHHHHHHHHHh
Confidence 0 135666666665555555432 2 5689999965 3458888888888877654
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=119.78 Aligned_cols=236 Identities=12% Similarity=0.083 Sum_probs=152.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++..++|++ ++.||.|++++.+.+.+ |.++++ +.|..-...|++++.++|++.|++|.+|.||-+|.+..-.
T Consensus 141 ~v~Y~vd~e-t~~IDyD~~~k~a~e~k-----PK~ii~--G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~ 212 (413)
T COG0112 141 VVSYGVDPE-TGLIDYDEVEKLAKEVK-----PKLIIA--GGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGV 212 (413)
T ss_pred eEecccccc-cCccCHHHHHHHHHHhC-----CCEEEE--CccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhccc
Confidence 566777764 56999999999998864 665554 3333445678999999999999999999999877665544
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhh-ccCCccccccccccccccCCCCceeccCCCcc-hHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSL-STNPEYLKNKATESKQVVDYKDWQITLSRRFR-SLK 170 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 170 (310)
+. .-+.++|+++.+.||+|.+|.| |+++.++.+..++.- ...| ..|++-... .++
T Consensus 213 ~p---~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFP-------------------g~qggpl~HviAa 269 (413)
T COG0112 213 HP---NPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFP-------------------GLQGGPLMHVIAA 269 (413)
T ss_pred CC---CCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCC-------------------ccCCChHHHHHHH
Confidence 43 2244699999999999999975 455555544432221 1111 123332222 234
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHH
Q 046506 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEF 249 (310)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (310)
..-+++.....++++..++..+||+.|.+.|.+. |+++++. .+..++.+.+.+.... .
T Consensus 270 kaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~~------------------G-- 328 (413)
T COG0112 270 KAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGLT------------------G-- 328 (413)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCCC------------------H--
Confidence 4455666667889999999999999999999985 9999863 4567777777742211 1
Q ss_pred HHHHHHHHHhcCcEEEE----EeE---ECCEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 250 NRELLESINASGKAYMT----HAV---LGGIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 250 ~~~l~~~l~~~g~~~~~----~~~---~~~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
.+....|.+.| +.+. |.+ .-....||+-.. .....++|++.+-+-|.+++.
T Consensus 329 -k~ae~~L~~~~-It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~ 389 (413)
T COG0112 329 -KKAEAALERAG-ITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD 389 (413)
T ss_pred -HHHHHHHHHcC-EeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence 12222333333 3332 111 123567888632 233556777777776666654
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=124.30 Aligned_cols=235 Identities=13% Similarity=0.056 Sum_probs=148.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeec
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~ 81 (310)
...|+. ++.+|.+ ++.+|++++++++++. +.+|++++++|++|.+.|.++|.++|+.+ |+++++|+
T Consensus 126 ~~~g~~---~~~~~~~---~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De 193 (367)
T PRK02731 126 QAVGAK---PVEVPAK---DYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDE 193 (367)
T ss_pred HHcCCe---EEEeccc---CCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEEC
Confidence 345665 8888885 3579999999998643 44788889999999999999999999875 99999999
Q ss_pred ccccccccChhhhhh-hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICPEFRHF-IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++............. ......-.++..|..|.++.| ..+|+++.+ +..++........+
T Consensus 194 ~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~-~~~~~~l~~~~~~~------------------ 254 (367)
T PRK02731 194 AYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP-PEIIDALNRVRQPF------------------ 254 (367)
T ss_pred cHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC-HHHHHHHHHccCCC------------------
Confidence 986543211111000 000111234556888987644 356888764 43433221111000
Q ss_pred eccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
. ......+++...+.. ..+++..++..++.+.+.+.|++. ++.+. ++..+++++.+.+..
T Consensus 255 -~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~------------ 315 (367)
T PRK02731 255 -N----VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGK------------ 315 (367)
T ss_pred -C----CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCC------------
Confidence 0 012333444444433 346777778888888999999887 77765 556777777763210
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
-..++.+.|.+.|............+++|+|+. +.+++++++++|++++.
T Consensus 316 ----------~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~----~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 316 ----------DAAEAYQALLKRGVIVRPVAGYGLPNALRITIG----TEEENRRFLAALKEFLA 365 (367)
T ss_pred ----------CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHHHh
Confidence 014566777777654333222222468999943 57899999999998753
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-12 Score=122.48 Aligned_cols=268 Identities=15% Similarity=0.146 Sum_probs=148.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|+++++.+.+|+++|++++.+..+.+..+.++++..++|++|.+.+ +++|+++|++||+++++
T Consensus 180 ~~~~g~~---~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 180 ITLLGGK---QVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred HHHcCCE---EEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3456666 89999987555789999999999764333223556777788999999988 88899999999999999
Q ss_pred ecccccccccC----hhhhhhhcCCCC-----CC-eeeeeccccccc--ccceEEEEEe--CchhHHhhhccCCcccccc
Q 046506 80 DAAYAGSACIC----PEFRHFIDGVEG-----AD-SFSLNAHKWFFT--TLDCCCLWVK--DPSDLVNSLSTNPEYLKNK 145 (310)
Q Consensus 80 D~a~~~~~~~~----~~~~~~~~~~~~-----~D-~~~~~~hK~l~~--p~g~g~l~v~--~~~~~~~~~~~~~~y~~~~ 145 (310)
|.++.-..+.. ........++.. .. ++..|..|.+++ ..-+|++.+. +++.+.........+..
T Consensus 257 De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~-- 334 (481)
T PTZ00377 257 DEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLC-- 334 (481)
T ss_pred ehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecC--
Confidence 99986433211 111111111100 11 344688997542 3456777652 45443322111101100
Q ss_pred ccccccccCCCCceeccCCCcchHHHHHHHHH--hCH---H----HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce
Q 046506 146 ATESKQVVDYKDWQITLSRRFRSLKLWFVLRN--YGV---A----NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA 216 (310)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~---~----~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~ 216 (310)
.-.+....+..+++. .+. + ...+..++..+..+.+.+.|.+++++.+. +|+.+
T Consensus 335 -----------------~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~-~p~gg 396 (481)
T PTZ00377 335 -----------------SNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQ-PVEGA 396 (481)
T ss_pred -----------------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEee-cCCee
Confidence 000111222222211 011 1 12223334567778889999888888876 44444
Q ss_pred EEEE-EEc-CCcchhhhhhhhccccchhHHHHHHHHHHH-HHHHHhcCcEEEEEeEEC---CEeEEEEEccCCCCCHHHH
Q 046506 217 VVCF-RVS-PSAVMDKLKTKYENSLLSEEERINEFNREL-LESINASGKAYMTHAVLG---GIYAIRFAAGATLTEERHV 290 (310)
Q Consensus 217 ~v~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~---~~~~iRis~~~~~~t~edi 290 (310)
...| .+. +..... ...... . .. ...+ ...+.+.|.....+..+. +.+.+|+|+. ++++++
T Consensus 397 ~fl~~~~~l~~~~~~---~~~~~~--~-----~~-~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~---~~~e~l 462 (481)
T PTZ00377 397 MYAFPRIELPEKAIQ---EAKERG--L-----AP-DVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL---PPEEQI 462 (481)
T ss_pred EEEEeeccCchhhHH---HHHhcC--C-----Cc-HHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC---CCHHHH
Confidence 3333 333 111000 000000 0 00 1122 334445665554444333 3468999965 568899
Q ss_pred HHHHHHHHHHHHHHhhc
Q 046506 291 MVAWTVVQEHLEALLSA 307 (310)
Q Consensus 291 ~~li~~l~~~~~~~~~~ 307 (310)
+..++.|++++++..++
T Consensus 463 ~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 463 EEMVKKIKEFHESFMKK 479 (481)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998776553
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-13 Score=122.63 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=145.9
Q ss_pred eecCCCCCCEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYG-LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~-id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|+. ++.++.++++.+. .++++|++++++. +.++++++++|.+|.+.+ +++|+++|+++|+++++
T Consensus 130 ~~~g~~---~~~v~~~~~~g~~~~~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 130 TSAGVK---IVPVTTKIEEGFHLPSKEEIEKLITPK------TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred HHcCCE---EEEeecCcccCCCCCCHHHHHHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 456776 8899987432233 3679999988654 347788889999999875 78899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCC-CC--eeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEG-AD--SFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~-~D--~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|.+++............ ..+.. .+ ++..|.+|.++. ...+|+++..++..+.............
T Consensus 201 De~y~~~~~~~~~~~s~-~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~----------- 268 (397)
T PRK07568 201 DEVYREFVYDGLKYTSA-LSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSP----------- 268 (397)
T ss_pred eccchhcccCCCCccCh-hhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccCCC-----------
Confidence 99987543322111111 11111 12 566799999875 3457777665554443221110000000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~ 234 (310)
+ .+....+..+++ .+...+++..++..+..+.+.+.|++++++.+. .|..+. +.+.++..+
T Consensus 269 -------s-~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~-------- 330 (397)
T PRK07568 269 -------P-TLEQIGAAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVVCE-KPKGAFYIIAKLPVDD-------- 330 (397)
T ss_pred -------C-cHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCcceEEEEecCCCC--------
Confidence 0 011122222222 134556777778888889999999888777655 344443 444443311
Q ss_pred hccccchhHHHHHHHHHHHHHHHHh------cCcEEEEEeEE---C--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINA------SGKAYMTHAVL---G--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~------~g~~~~~~~~~---~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.+.+ .|....++... . +.+.+|+|+. .++++++..++.|.+.+++
T Consensus 331 ---------------~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~---~~~~~~~~~~~~l~~~l~~ 392 (397)
T PRK07568 331 ---------------AEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV---LNEEDLKRAMEILKEALEK 392 (397)
T ss_pred ---------------HHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe---CCHHHHHHHHHHHHHHHHH
Confidence 0234444433 34433333222 1 2468999965 3479999999999988876
Q ss_pred Hh
Q 046506 304 LL 305 (310)
Q Consensus 304 ~~ 305 (310)
..
T Consensus 393 ~~ 394 (397)
T PRK07568 393 YN 394 (397)
T ss_pred hh
Confidence 54
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=121.94 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.+.+. +.+|++....+++|.+.| +++|.++|++||+++++|++|++.........-...++ .
T Consensus 172 d~~~l~~~~~~~------~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~ 244 (398)
T PRK03244 172 DVDALAAAVDDD------TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGV-T 244 (398)
T ss_pred CHHHHHHhhcCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCC-C
Confidence 789999888432 457777777899999887 89999999999999999999975433222110001222 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++++ .|++++....|+++.+++ .. +.+.. .... .++ ++-+....++.++++.+..
T Consensus 245 pDi~t~--sK~l~~G~~ig~~~~~~~-~~-~~~~~--~~~~--------------~t~-~~~~~~~aaa~a~l~~~~~-- 301 (398)
T PRK03244 245 PDVVTL--AKGLGGGLPIGACLAFGP-AA-DLLTP--GLHG--------------STF-GGNPVACAAALAVLDTIAS-- 301 (398)
T ss_pred CCEEEE--chhhhCCcccEEEEEcHH-HH-hhccC--CCCc--------------CCC-CCCHHHHHHHHHHHHHHHh--
Confidence 676655 699987666888877654 32 33211 0000 011 1111223334444443432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
++..++..++.+++++.|+++ +..++. .....++.+.+... ....+.+.+.++
T Consensus 302 -~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~-----------------------~~~~~~~~l~~~ 356 (398)
T PRK03244 302 -EGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAP-----------------------VAKAVEAAAREA 356 (398)
T ss_pred -ccHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEecc-----------------------HHHHHHHHHHHC
Confidence 345677778889999999875 232221 12345565655321 124677788888
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
|.+ +.+. +..+||++++ ...+++||++++++|++++..++
T Consensus 357 Gv~-~~~~---~~~~iR~~p~-~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 357 GFL-VNAV---APDVIRLAPP-LIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred CeE-Eeec---CCCEEEEECC-CcCCHHHHHHHHHHHHHHHHhcc
Confidence 754 4432 3468999965 56889999999999999987653
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-13 Score=124.27 Aligned_cols=257 Identities=14% Similarity=0.063 Sum_probs=147.6
Q ss_pred EEEEecCCCC--------CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccCC---hHHHHHHHHHhCcEEEee
Q 046506 13 FRAIKTTKSS--------SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 13 v~~v~~~~~~--------~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
.+.+++++.. ++.+|+++|+++|.+.+.. .+.+|+++..+|.+ |.+.+ +++|+++|++||++++.|
T Consensus 115 pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~--~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~D 192 (431)
T cd00617 115 PVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAE--NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLD 192 (431)
T ss_pred eEEEecccccccccccCCCCCcCHHHHHHHhCcccCC--CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 8888887531 2459999999999864211 13467777777765 77654 668899999999999999
Q ss_pred cccccccccC-----hhh-----hhhh-cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccc
Q 046506 81 AAYAGSACIC-----PEF-----RHFI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATES 149 (310)
Q Consensus 81 ~a~~~~~~~~-----~~~-----~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~ 149 (310)
+||......+ +.+ .+.. .-...+|++++|+||.+++|. .|+++.++++.+.+..... +.....
T Consensus 193 aAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l~~~~~~~~--~~~~~~--- 266 (431)
T cd00617 193 AARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDELYEEARQRV--VLYEGF--- 266 (431)
T ss_pred chhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHHHHHHHHhc--cccCCc---
Confidence 9986542111 111 1110 112369999999999988875 3455555554544432111 000000
Q ss_pred ccccCCCCceeccCCCcchHH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcch
Q 046506 150 KQVVDYKDWQITLSRRFRSLK-LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVM 228 (310)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~ 228 (310)
..-++.....+. +..++..... .+.+++..+.++++.+.|.+. |+.+..|.....+.+.+....
T Consensus 267 ---------~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~-- 331 (431)
T cd00617 267 ---------VTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFL-- 331 (431)
T ss_pred ---------cccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhc--
Confidence 001121212221 1213321111 234455555668899999887 888876666666666555310
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcC-cEEEE-Ee-----EEC-------CEeEEEEEccCCCCCHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASG-KAYMT-HA-----VLG-------GIYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~-~~-----~~~-------~~~~iRis~~~~~~t~edi~~li 294 (310)
.. .+.+. --.+++..+|.++. ...+. +. ... ....+|+.+...--|.+++|.+.
T Consensus 332 ---~~-------~~~~~--~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~ 399 (431)
T cd00617 332 ---PH-------IPQEQ--FPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVA 399 (431)
T ss_pred ---CC-------CCccc--CcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHH
Confidence 00 00000 01245555555444 33222 11 111 14789999887678899999999
Q ss_pred HHHHHHHHHH
Q 046506 295 TVVQEHLEAL 304 (310)
Q Consensus 295 ~~l~~~~~~~ 304 (310)
++|.++.++.
T Consensus 400 ~~~~~~~~~~ 409 (431)
T cd00617 400 AAVIALYERR 409 (431)
T ss_pred HHHHHHHhhH
Confidence 9999998653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-13 Score=121.05 Aligned_cols=235 Identities=9% Similarity=0.054 Sum_probs=147.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++++.+.+| +++++.+.+. +.+++++.++|++|...+ +++|+++|++||+++++
T Consensus 110 ~~~~g~~---~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 110 LKAFDAE---IEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred HHHcCCe---eEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 4456776 899998765456788 6666666432 346777888999999876 77888899999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCC--eeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGAD--SFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D--~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++.-...... .......+...+ ++..|..|.++ ...-+|+++..++..........+.+ .
T Consensus 180 De~Y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~----~---------- 244 (354)
T PRK06358 180 DEAFMDFLEENE-TISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPW----S---------- 244 (354)
T ss_pred eCcccccCCCcc-chhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCC----c----------
Confidence 999864432211 111111111111 56689999998 44667777655443332221111111 0
Q ss_pred CceeccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
...+..+++...+.. +.+++..+...+..+.+.+.|.+++++.+. ++..+.+.+.+++.
T Consensus 245 ---------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~~---------- 304 (354)
T PRK06358 245 ---------INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVY-KPSVNFIFFKLEKP---------- 304 (354)
T ss_pred ---------chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CCcceEEEEEcCch----------
Confidence 112222333333433 234677777788889999999988887765 45666555544321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+.+.|.....+..+. +.+++|+++. ++++.++|+++|+++.
T Consensus 305 ---------------~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~----~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 305 ---------------IDLRKELLKKGILIRSCSNYRGLDENYYRVAVK----SREDNKKLLKALEVIL 353 (354)
T ss_pred ---------------HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHh
Confidence 356777777775444443332 3468999943 5789999999998764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=124.30 Aligned_cols=240 Identities=14% Similarity=0.093 Sum_probs=142.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|.++.+.+.+|++++++++.+. +.++++++++|++|.+.+ +++|+++|++||+++++
T Consensus 132 ~~~~G~~---v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 202 (383)
T TIGR03540 132 TLFAGGE---PYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCH 202 (383)
T ss_pred HHhcCCE---EEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEE
Confidence 4466776 99999975434678999999998654 447777788999999988 78899999999999999
Q ss_pred ecccccccccChhhhhhh--cCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|.+++-............ .......++..|..|.++.| | +|+++ .+++.+........ +....
T Consensus 203 De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~-GlRiG~~i-~~~~l~~~~~~~~~-~~~~~---------- 269 (383)
T TIGR03540 203 DNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMT-GWRIGMAV-GNADLIAGLGKVKT-NVDSG---------- 269 (383)
T ss_pred ecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCc-cceeeEEe-CCHHHHHHHHHHHH-hcccC----------
Confidence 999964332111111100 11111335668889988644 4 77775 45544432211110 00000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
........+..+++ -+.+.+++..++..++.+.+.+.|.+. ++.+..+.....+.+.+++. .
T Consensus 270 -------~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~~-~-------- 331 (383)
T TIGR03540 270 -------VFQAIQYAAIAALN-GPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVPEG-Y-------- 331 (383)
T ss_pred -------CChHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECCCC-C--------
Confidence 00011122222332 134556777778888899999999887 78776443333344554431 0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEe-EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINA-SGKAYMTHA-VLG--GIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~--~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
+ ..++.+.+.+ .|. .+.+. ... +.+++|+++. .++++++..++.|++
T Consensus 332 ------~-------~~~~~~~ll~~~gi-~v~~g~~f~~~~~~~~Ris~~---~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 332 ------T-------SAEFAARLLEETGV-VVTPGVGFGEYGEGYIRISLT---VPDERLEEAVARIKK 382 (383)
T ss_pred ------C-------HHHHHHHHHHHCCE-EEecchhhCccCCCeEEEEec---CCHHHHHHHHHHHhh
Confidence 0 1356666654 454 44433 222 3468999965 346677776666543
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=124.37 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=102.0
Q ss_pred cEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEE
Q 046506 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCC 122 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~ 122 (310)
+.+|++.+++|++|.+.|+++|+++|+++|++++||++++.+.. .. .. . .++|+++.|+||+++++.+ .|+
T Consensus 131 tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-~~---~l--~-~~~divv~S~sK~l~G~~~~~~G~ 203 (376)
T PRK06460 131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-QK---PL--E-LGADIVVHSASKFLAGHNDVIAGL 203 (376)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-CC---hh--h-cCCCEEEeecceeccCCCCceEEE
Confidence 45888999999999999999999999999999999999975421 11 11 1 2489999999999976543 454
Q ss_pred EEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHc
Q 046506 123 LWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVG 202 (310)
Q Consensus 123 l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~ 202 (310)
+ +.+++...........+ . ....+..+|.+++ +.+.++.++++..++++++.+.|+
T Consensus 204 ~-~~~~~l~~~l~~~~~~~-g--------------------~~~~~~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~ 259 (376)
T PRK06460 204 A-AGYGKLLNVIDQMRRTL-G--------------------TSLDPHAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLE 259 (376)
T ss_pred E-ecCHHHHHHHHHHHHhc-C--------------------CCCCHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHH
Confidence 4 45554433221111111 0 0012233444443 567889999999999999999999
Q ss_pred CCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 203 SDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 203 ~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
+.|.+.-+. | | ..++++|.+.+
T Consensus 260 ~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 260 GHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred cCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 888875332 2 1 25688888864
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-13 Score=122.90 Aligned_cols=257 Identities=12% Similarity=0.018 Sum_probs=150.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+++++++++.+|++.|++.+++. +.++++.+++|++|.+.+ +++|+++|+++|+++++
T Consensus 136 ~~~~g~~---v~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 136 AESMGIE---VKLYNLLPDKSWEIDLKQLESLIDEK------TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred HHHcCCE---EEEeecCCccCCCCCHHHHHHHhccC------ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4556776 88888876545789999999988654 236778888999999865 88899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCC-Ceeeeecccccccc-cceEEEEEeCch-hHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGA-DSFSLNAHKWFFTT-LDCCCLWVKDPS-DLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~-D~~~~~~hK~l~~p-~g~g~l~v~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++...............-.... -+++.|..|.++.| .-+|+++..++. .+.........+.....
T Consensus 207 De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~---------- 276 (401)
T TIGR01264 207 DEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRIL---------- 276 (401)
T ss_pred EhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccC----------
Confidence 999865443221111111100111 25678999975554 457877765421 11111100000000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
..+ ......+...+.....+.+++..++..+..+.+.+.|++++++.+..+..++.+.+.+......
T Consensus 277 ----~~~-~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-------- 343 (401)
T TIGR01264 277 ----GPC-TIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFP-------- 343 (401)
T ss_pred ----CCC-cHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccC--------
Confidence 000 0111222223322123556777788888888999999988777654444555666655321000
Q ss_pred cccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.. ....++.+.+. +.|.....+......+++|+++.. .+++++..++.|.+.+++
T Consensus 344 ----~~-----~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~---~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 344 ----EF-----KNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV---PVVMMEEACSRIQEFCER 399 (401)
T ss_pred ----CC-----CCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 00 00134556665 456544433333446799999663 478999999888887654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-13 Score=123.74 Aligned_cols=238 Identities=12% Similarity=0.026 Sum_probs=143.0
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++...|+. ++.+|.++.+.+.+|++++++++.+. +.+++++..+|++|.+.| +++|+++|++||++++
T Consensus 103 ~~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 103 GALFAGGE---PTAVKLKKEDGFLLRLEKVEKSILEE------TKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred HHHhcCCE---EEEcccCcccCCccCHHHHHHhhhhc------cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEE
Confidence 34567776 99999975334679999999998764 347778888999999888 8899999999999999
Q ss_pred eecccccccccChhhhhhhcCCC-CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 79 VDAAYAGSACICPEFRHFIDGVE-GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~-~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
+|.+++......+. .. ..... .-.++..|.+|.++.|. -.|+++ .++............+ ..
T Consensus 174 ~De~y~~~~~~~~~-~~-~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~-~~~~~~~~~~~~~~~~-~~------------ 237 (350)
T TIGR03537 174 SDECYTEIYFGEPP-HS-ALEVGIENVLAFHSLSKRSGMTGYRSGFVA-GDEKLISFLRKLRANF-GV------------ 237 (350)
T ss_pred EeccccccccCCCC-Cc-hhhcCcCCEEEEeecccccCCccccceeee-cCHHHHHHHHHHHHhh-cc------------
Confidence 99998643321111 00 01111 11255568999987552 256554 4454332222111111 00
Q ss_pred CceeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~ 234 (310)
+. ..+...++...+ .....++..++..++.+.+.+.|.+. ++++. ++..+. +.+.++.. .
T Consensus 238 ------~~--~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~~~~~~~~~~~-~------- 299 (350)
T TIGR03537 238 ------AS--PDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLEYL-YPDATFYLWVKVPSG-I------- 299 (350)
T ss_pred ------CC--CHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeEEEEEEECCCC-C-------
Confidence 00 001111111122 23455677777888888888988876 77665 444443 44444331 0
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
-..++.+.|.++|.....+... .+.+++|+++. .++++++..++.|++
T Consensus 300 --------------~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~---~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 300 --------------DAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV---PTLEECEEALRLWER 349 (350)
T ss_pred --------------CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHhc
Confidence 0135677777776543333322 22578999954 467888888887764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=122.46 Aligned_cols=254 Identities=12% Similarity=0.066 Sum_probs=150.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.+++..+.+|+++|++++.+. +.++++++++|++|.+.+ +++|+++|++||+++++
T Consensus 145 ~~~~g~~---~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 145 CKAYGIE---MRFYNCRPEKDWEADLDEIRRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred HHHcCCE---EEEEecCccccCcCCHHHHHHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 4566776 89999876545789999999988654 347778889999998765 77789999999999999
Q ss_pred ecccccccccChhhhhhhcCCC-C-CCeeeeecccccccc-cceEEEEEeCc-----hhHHhhhccCCcccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFIDGVE-G-ADSFSLNAHKWFFTT-LDCCCLWVKDP-----SDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~-~-~D~~~~~~hK~l~~p-~g~g~l~v~~~-----~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
|.++.........+.. ...+. . --++..|..|.++.| .-+|++++.++ ..+........... ..
T Consensus 216 De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~-~~------ 287 (412)
T PTZ00433 216 DEIYAGMVFNGATFTS-VADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVC-GP------ 287 (412)
T ss_pred eccccccccCCCCccc-hhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccC-CC------
Confidence 9998644322111111 11110 1 125668999998544 66788876332 22211111000000 00
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhh
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~ 231 (310)
+ ......+...+..-....+++..++..+..+.+.+.|.+..++.+..+.....+.+.+......
T Consensus 288 -----------~-~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~--- 352 (412)
T PTZ00433 288 -----------C-SVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFR--- 352 (412)
T ss_pred -----------C-hHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcC---
Confidence 0 0111111222221113456777778888888899999876677655333455555555431000
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ .....++.+.+.+ .|.....+......+++|+++.. .+++++..++.|.+++...+
T Consensus 353 ----------~----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 353 ----------D----IKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR---PVEVLREAVERIKAFCERHK 410 (412)
T ss_pred ----------C----CCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHhc
Confidence 0 0001356666664 56544443333445799999652 48889999999988876543
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-13 Score=123.34 Aligned_cols=245 Identities=13% Similarity=0.093 Sum_probs=143.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.++.++..++.+|+++|++++++. +.++++++.+|++|.+.+ +++|+++|++||+++++
T Consensus 131 ~~~~g~~---~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 131 LDMLGIR---PVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred HHhcCCE---EEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 3456776 99999985434678999999999764 336677788899999877 78999999999999999
Q ss_pred ecccccccccChhhhhhhcCCC-CC-Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVE-GA-DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~-~~-D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|++++................. +. .++..|.+|.++.| ..+|+++.. +..+..... +.....
T Consensus 202 Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~-~~~~~~~~~----~~~~~~---------- 266 (386)
T PRK07550 202 DETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVAS-PARIAEIEK----FMDTVA---------- 266 (386)
T ss_pred eccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecC-HHHHHHHHH----HHhhcc----------
Confidence 9998644221100000111000 11 24578999998744 346777654 433322211 111000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
...+ ......+...+.. ..+..++..++..+..+.+.+.|.+.+++.+. +.....+.+.+.....
T Consensus 267 ---~~~s-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~~~--------- 331 (386)
T PRK07550 267 ---ICAP-RIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFPDR--------- 331 (386)
T ss_pred ---cCCC-cHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCCCC---------
Confidence 0000 1111122222221 12345566677778888899999876676553 3344444444432110
Q ss_pred cccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
-..++.+.|.+ .|.....+..+. +..++|+++.. .++++++.+++.|+++
T Consensus 332 ------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 332 ------------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN--ADVAGIGELVERLRAF 384 (386)
T ss_pred ------------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec--CCHHHHHHHHHHHHhh
Confidence 01356666654 454333322222 35689999763 5789999999988775
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=122.62 Aligned_cols=258 Identities=12% Similarity=0.088 Sum_probs=152.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
.+.|++ ++.+++.+..++.+|+++|++++++++ ..+++++++|++|.+.| +++|+++|+++|+++++|
T Consensus 159 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~D 229 (430)
T PLN00145 159 VFSGLE---VRHFDLLPERGWEVDLEGVEALADENT------VAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIAD 229 (430)
T ss_pred HHcCCE---EEEeeCCcccCCcCCHHHHHHHhCcCc------eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 455776 888887654457899999999987653 47888889999999988 888999999999999999
Q ss_pred cccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCch-hHHhh--hccCCccccccccccccccC
Q 046506 81 AAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPS-DLVNS--LSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~-~~~~~--~~~~~~y~~~~~~~~~~~~~ 154 (310)
.++....+........ .... .-=++..|..|.++.| .-+|++++.++. .+... ...-..+.....
T Consensus 230 e~Y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~-------- 300 (430)
T PLN00145 230 EVYDHLTFGSKPFVPMGVFGEV-APVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNIST-------- 300 (430)
T ss_pred ccchhhccCCCCccchhhhccc-CcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccC--------
Confidence 9986543321111110 0110 1124568899996665 557777764432 21110 000000100000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-ceEEEEEEcCCcchhhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-FAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-~~~v~~~~~~~~~~~~~~~ 233 (310)
+.-.+...++..+++.-..+.+++.+++..+..+.+.+.|++++++.....|. ...+.+.+......
T Consensus 301 -------~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~----- 368 (430)
T PLN00145 301 -------DPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS----- 368 (430)
T ss_pred -------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcC-----
Confidence 00001112222222211134567788888888999999999888887543344 44444444321000
Q ss_pred hhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 234 KYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ .. ...++...+. +.|.+...+...+..+++|+|+. .++++++..++.|++++.+.++
T Consensus 369 --------~---~~-~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~---~~~~~l~~al~rl~~~~~~~~~ 427 (430)
T PLN00145 369 --------G---IK-DDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA---IDPPSLEDGLERLKSFCLRHAK 427 (430)
T ss_pred --------C---CC-CHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHHhcc
Confidence 0 00 0134454444 45555554444455689999966 3678899999888888876543
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-13 Score=129.09 Aligned_cols=173 Identities=15% Similarity=0.145 Sum_probs=112.8
Q ss_pred ecCCCCCCEEEEecCCCCC---cccC-----HHHHHHHHHHHHH----cCCCcEEEEEeccCCcccccCChHHHHHHHHH
Q 046506 5 IVGIDVKNFRAIKTTKSSS---YGLS-----PDSLMAKINSDVE----AGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ 72 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~---~~id-----~~~Le~~i~~~~~----~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~ 72 (310)
+.|+. .+++++.-++. +.++ +++++++|.++.. .+.+|..+++ ..+|..|.+.++++|+++||+
T Consensus 264 L~ga~---Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvl-t~PTY~Gv~~di~~I~~~~h~ 339 (755)
T PRK15029 264 LTGAK---PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVV-TNCTYDGVCYNAKEAQDLLEK 339 (755)
T ss_pred HcCCe---EEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEE-ECCCCcceeeCHHHHHHHHHh
Confidence 44554 77776543211 1244 9999999976542 1234545555 455668999999999999999
Q ss_pred hCcEEEeecccccccccChhhhhhhcCC-------CCCC-eeeeecccccccccceEEEEEeCch------hHHhhh---
Q 046506 73 FGIWVHVDAAYAGSACICPEFRHFIDGV-------EGAD-SFSLNAHKWFFTTLDCCCLWVKDPS------DLVNSL--- 135 (310)
Q Consensus 73 ~g~~l~vD~a~~~~~~~~~~~~~~~~~~-------~~~D-~~~~~~hK~l~~p~g~g~l~v~~~~------~~~~~~--- 135 (310)
+|++|+||.|||+.+.+.+.++.. ..+ .++| +++-|.||++.+..++++++++... .+.+.+
T Consensus 340 ~~~~llvDEAhGah~~F~~~~p~~-sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~ 418 (755)
T PRK15029 340 TSDRLHFDEAWYGYARFNPIYADH-YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH 418 (755)
T ss_pred cCCeEEEECccccccccCcccccc-ccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHH
Confidence 999999999999888766654420 111 3688 8889999999999999999996541 122222
Q ss_pred -ccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 046506 136 -STNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR 206 (310)
Q Consensus 136 -~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~ 206 (310)
+.+|.|... +++-.+.+.+....-++.+++..+.+..+++.|.++++
T Consensus 419 qSTSPSY~Lm------------------------ASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~ 466 (755)
T PRK15029 419 ATTSPLYAIC------------------------ASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_pred cCCCcHHHHH------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 222332221 12222222332222355677778888889999877765
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=123.77 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=152.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+...|+. ++.++..+.+.+.+|+++|++++++. +..+++.+++|++|.+.+ +++|+++|++||+++++
T Consensus 172 ~~~~g~~---~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 172 AAYSGLE---VRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred HHHcCCE---EEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 4456776 88998865446789999999988654 347888889999999877 88899999999999999
Q ss_pred ecccccccccChhhhhhhcCCC-CC-Ceeeeecccccccc-cceEEEEEeCchhHH---hhh-ccCCccccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFIDGVE-GA-DSFSLNAHKWFFTT-LDCCCLWVKDPSDLV---NSL-STNPEYLKNKATESKQV 152 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~-~~-D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~---~~~-~~~~~y~~~~~~~~~~~ 152 (310)
|.+++-..+....+... ..+. .. =++..|..|.++.| .-+|+++..++..+. +.+ .....+-...
T Consensus 243 DE~Y~~l~f~~~~~~s~-~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~------- 314 (462)
T PLN02187 243 DEVYDRTIFGDNPFVSM-GKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTP------- 314 (462)
T ss_pred eccccccccCCCCceeH-HHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccC-------
Confidence 99986543321111110 1110 11 14557899997766 447777765442110 111 1110100000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-ceEEEEEEcCCcchhhh
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-FAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-~~~v~~~~~~~~~~~~~ 231 (310)
+.-.+...++.++++.-..+.+++..+...+..+.+.+.|++++++.....|. ++.+.+.+.....
T Consensus 315 ---------~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~---- 381 (462)
T PLN02187 315 ---------DPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLM---- 381 (462)
T ss_pred ---------CCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhC----
Confidence 00001112222233221235677788888888999999999876553333344 4455554432100
Q ss_pred hhhhccccchhHHHHHHHHHHHHH-HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 232 KTKYENSLLSEEERINEFNRELLE-SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.+ +. -..++.. .+.+.|.....+...+..+++|+++. +.++.++..++.|.+++++.++
T Consensus 382 ---------~~---~~-~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~---~~~e~l~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 382 ---------DN---IK-DDIDFCVKLAREENLVFLPGDALGLKNWMRITIG---VEAHMLEDALERLKGFCTRHAK 441 (462)
T ss_pred ---------CC---CC-CHHHHHHHHHhhCCEEEECccccCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHHhhh
Confidence 00 00 0123333 34556655554444445689999966 3588999999999998876544
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=126.39 Aligned_cols=242 Identities=15% Similarity=0.114 Sum_probs=148.2
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.++.++++++.+|+++|++++.+. +.++++..++|++|.+.+ +++|+++|++||+++++|
T Consensus 123 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D 193 (378)
T PRK07682 123 TLAGGV---PVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSD 193 (378)
T ss_pred HHcCCE---EEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence 445655 88888865435689999999998653 346777788999999865 889999999999999999
Q ss_pred cccccccccChhhhh--hhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRH--FIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
.+++......+ ... .......-.++..|..|.++.| .-+|+++.. +..+....... .+....
T Consensus 194 e~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~i~~l~~~~-~~~~~~------------ 258 (378)
T PRK07682 194 EIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP-VYFSEAMLKIH-QYSMMC------------ 258 (378)
T ss_pred hhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcC-HHHHHHHHHHH-HhhccC------------
Confidence 99875543211 100 0111112346778999999755 237887754 43433221110 010000
Q ss_pred ceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE-EEcCCcchhhhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF-RVSPSAVMDKLKTK 234 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~-~~~~~~~~~~~~~~ 234 (310)
...+...++...+ +...+++..++..++.+.+.+.|+++ ++++. +|..+.+.| .+.+...
T Consensus 259 --------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~p~g~~~~~~~~~~~~~------- 321 (378)
T PRK07682 259 --------APTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCH-VPGGAFYAFPSISSTGL------- 321 (378)
T ss_pred --------CCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCeeEEEEEeccCCCC-------
Confidence 0112222223333 33456777788888999999999887 77654 445544433 3322110
Q ss_pred hccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.+. +.|.....+... .+.+++|+|+. +++++++..++.|+++++.
T Consensus 322 -------~-------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 322 -------S-------SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA---TSLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred -------C-------HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC---CCHHHHHHHHHHHHHHHhh
Confidence 0 135666655 455444333222 23579999966 3588999999999887754
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=118.24 Aligned_cols=232 Identities=14% Similarity=0.054 Sum_probs=146.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|.. ++.++.+++ +.+|++++++++++. .+.++++++++|++|.+.+.+++.++|++++.++++|++
T Consensus 117 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~ 186 (351)
T PRK14807 117 SKIAGAV---EIPVKLKED--YTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEA 186 (351)
T ss_pred HHHcCCe---EEEeecCCC--CCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCc
Confidence 3456766 889998753 589999999999752 134777788999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
++... ........... .--++..|.+|.++.| .-+|+++ .+++.+.........+.
T Consensus 187 y~~~~--~~~~~~~~~~~-~~vi~~~S~SK~~~~~GlRiG~~v-~~~~~~~~~~~~~~~~~------------------- 243 (351)
T PRK14807 187 YFEFY--GNTIVDVINEF-ENLIVLRTLSKAFGLAGLRVGYAV-ANENILKYLNLVKSPYN------------------- 243 (351)
T ss_pred chhhc--ccchHHHhhhC-CCEEEEecchHhcccchhceeeee-cCHHHHHHHHHccCCCC-------------------
Confidence 96432 11111111111 1236678999999744 4466665 34544332211110000
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
...+...++...+....+++..++..++.+++.+.|.+++++.+. ++..+.+.+.+...
T Consensus 244 ----~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~~---------------- 302 (351)
T PRK14807 244 ----INSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKDA---------------- 302 (351)
T ss_pred ----cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCCH----------------
Confidence 012222333334434456777777778888899999887888764 55565555444321
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+.+.|........ ....+++|+++. +.++.++|+++|++++
T Consensus 303 ---------~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 303 ---------DYVYQGLLERGILVRDFSKVEGLEGALRITVS----SCEANDYLINGLKELL 350 (351)
T ss_pred ---------HHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHhh
Confidence 3566777777754322111 123578999954 4678999999998753
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=121.23 Aligned_cols=218 Identities=12% Similarity=0.079 Sum_probs=133.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++|+++|.+. +.+|++.+..+++|.+.| +++|+++|++||+++++|++|++.............++
T Consensus 175 ~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~- 247 (401)
T PRK00854 175 GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI- 247 (401)
T ss_pred CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC-
Confidence 4789999998653 458889999999999887 99999999999999999999973322211111111222
Q ss_pred CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|.++++ |++.+.. ..|++..+++ .+ +.+.. . . .. .++ ++-+..+..+.++++.+..
T Consensus 248 ~~D~~~~~--K~l~gg~~~ig~v~~~~~-~~-~~l~~---~-~-~~-----------~t~-~~~~~~~aa~~a~L~~l~~ 306 (401)
T PRK00854 248 EADVTLIG--KALSGGFYPVSAVLSNSE-VL-GVLKP---G-Q-HG-----------STF-GGNPLACAVARAALKVLTE 306 (401)
T ss_pred CCCEEEec--ccccCCccCeEEEEEcHH-HH-hcccC---C-C-CC-----------CCC-CcCHHHHHHHHHHHHHHHH
Confidence 36887774 9987642 3565655433 33 22210 0 0 00 001 1111223334444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+...++..++.+++.+.|+++. ...+. .+...++.+.+.+.. ....++.+.|.
T Consensus 307 ---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~---------------------~~~~~~~~~L~ 361 (401)
T PRK00854 307 ---EGMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEA---------------------GGARQYCEALK 361 (401)
T ss_pred ---cCHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCc---------------------hhHHHHHHHHH
Confidence 3356777888899999998763 22221 233445555554321 11246777787
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
++|. .+.+ .+..++|++++ ..++++||++++++|++.+
T Consensus 362 ~~GV-~v~~---~~~~~lR~~p~-~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 362 ERGL-LAKD---THDHTIRLAPP-LVITREQVDWALEQIAKVL 399 (401)
T ss_pred HCCe-EEec---CCCCEEEEeCC-cccCHHHHHHHHHHHHHHh
Confidence 8874 4432 23469999954 5789999999999998865
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-12 Score=120.10 Aligned_cols=243 Identities=11% Similarity=0.051 Sum_probs=141.6
Q ss_pred EEEEecCCCC----CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccc
Q 046506 13 FRAIKTTKSS----SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 13 v~~v~~~~~~----~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~ 84 (310)
++.+|.++.. ....|+++|++.+.+.. ..+.+++++...+++|.+.| +++|.++|++||+++++|++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~ 235 (413)
T cd00610 159 VLHVPYPYRYRPPAELADDLEALEEALEEHP---EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT 235 (413)
T ss_pred cEEeCCCccccchhhHHHHHHHHHHHHhcCC---CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 5666665210 12458899999987531 12457777778888899887 9999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
+.........-...++ ..|++++ .|+++++..+|+++.+ ++.+ +.+... .+.... + .++-
T Consensus 236 g~g~~g~~~~~~~~~~-~~d~~t~--sK~l~~g~~~g~~~~~-~~~~-~~~~~~-~~~~~~-------------t-~~~~ 295 (413)
T cd00610 236 GFGRTGKMFAFEHFGV-EPDIVTL--GKGLGGGLPLGAVLGR-EEIM-DAFPAG-PGLHGG-------------T-FGGN 295 (413)
T ss_pred CCCcCcchhhHhhcCC-CCCeEEE--cccccCccccEEEEEc-HHHH-HhhccC-CCCCCC-------------C-CCcC
Confidence 5322111100001122 3576655 4999987778888654 4443 322000 000000 0 0111
Q ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC---eEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 165 RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR---FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~---~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
+....++.++++.+.. +++.++..++.+++++.|+++.. +.........++.+.+...... .
T Consensus 296 ~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~- 360 (413)
T cd00610 296 PLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRAT-----------K- 360 (413)
T ss_pred HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCc-----------C-
Confidence 1223344455555433 35667777888888888876421 1111123456777776542100 0
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.. + ......+.+.|.+.|. ++.+. +...+|++++ ..+|++||++++++|++.
T Consensus 361 ~~-~-~~~~~~~~~~l~~~gv-~v~~~---~~~~lR~~~~-~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 361 PP-D-KELAAKIIKAALERGL-LLRPS---GGNVIRLLPP-LIITEEEIDEGLDALDEA 412 (413)
T ss_pred Cc-c-hHHHHHHHHHHHHCCe-EEeec---CCCEEEEECC-CcCCHHHHHHHHHHHHHh
Confidence 00 0 1223567777878875 44432 1467999965 578999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=121.36 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++++++. +.+|+++...+++|.+.| +++|.++|++||+++++|++|.+.............++ .
T Consensus 175 d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~ 247 (396)
T PRK04073 175 DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV-T 247 (396)
T ss_pred CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCC-C
Confidence 678898888643 357888888899999876 89999999999999999999975433221111001122 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.++++ .-.|++..+ ++.. +.+... . ... ++ ++-+....+..++++.+..
T Consensus 248 pdi~~~--sK~lg~gg~~ig~~~~~-~~i~-~~~~~~-~-~~~--------------t~-~~~~~~~aaa~aaL~~~~~- 305 (396)
T PRK04073 248 PDMYIL--GKALGGGVFPISCVAAN-RDIL-GVFTPG-S-HGS--------------TF-GGNPLACAVSIAALEVLEE- 305 (396)
T ss_pred CCEEEe--cccccCCCCcceEEEEc-HHHH-hhhcCC-C-CCC--------------CC-CCCHHHHHHHHHHHHHHHh-
Confidence 677765 6988765 346776654 4333 222110 0 000 00 1111222333344543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD--KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+...++..++.+++.+.|+++ +.+..+ .+...++.+.+... ..++.+.|.+
T Consensus 306 --~~l~~~~~~~~~~l~~~L~~l~~~~i~~~-~~~g~~~~~~~~~~------------------------~~~~~~~l~~ 358 (396)
T PRK04073 306 --EKLPERSLELGEYFKEQLKEIDNPMIKEV-RGRGLFIGVELNEP------------------------ARPYCEALKE 358 (396)
T ss_pred --cCHHHHHHHHHHHHHHHHHhhcCCcccce-ecceEEEEEEecch------------------------HHHHHHHHHH
Confidence 245566677888999998875 222221 22344555554321 1356677777
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+|.+ +.+. +..+|||+++ ...|+||+++++++|++.+
T Consensus 359 ~Gv~-~~~~---~~~~iRi~p~-l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 359 EGLL-CKET---HETVIRFAPP-LVITKEELDWAFEKIKAVL 395 (396)
T ss_pred CCeE-EecC---CCCEEEEECC-cccCHHHHHHHHHHHHHHh
Confidence 7754 4332 3468999965 6799999999999998764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=121.47 Aligned_cols=246 Identities=11% Similarity=0.030 Sum_probs=146.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|.+++ ++.+|+++|++.+.+. +.++++++++|++|.+.+ +++|+++|++||+++++
T Consensus 128 ~~~~g~~---~~~~~~~~~-~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 128 IRRAGGV---PRLVRLEPP-HWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred HHHcCCE---EEEEecCcc-cCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 4556776 889998753 4689999999988653 347777889999999877 77799999999999999
Q ss_pred ecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++........+.... .+...-+++..|.+|.++.| .-+|+++.. +..+.............
T Consensus 198 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~~~~l~~~~~~~~~~------------ 264 (387)
T PRK08912 198 DEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA-PPLLRVLAKAHQFLTFT------------ 264 (387)
T ss_pred hhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC-HHHHHHHHHHHhhcccc------------
Confidence 999864433211111111 11223468889999988744 237877764 43332221111000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~ 235 (310)
.+ +.....+..++. ...+.+++..++..+..+.+.+.|++. ++++. ++..+ .+++.+.+...
T Consensus 265 -----~~-~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~l~~~l~~~~~-------- 327 (387)
T PRK08912 265 -----TP-PNLQAAVAYGLG-KPDDYFEGMRADLARSRDRLAAGLRRI-GFPVL-PSQGTYFLTVDLAPLGL-------- 327 (387)
T ss_pred -----CC-hHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEecccccCC--------
Confidence 00 001111112221 123445677788888899999999887 77766 34444 44455543100
Q ss_pred ccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..-..++.+.+. +.|....++... .+.+++|+++.. .+++++..++.|++.+.
T Consensus 328 -----------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~---~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 328 -----------AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK---RDATLDEAVERLAAARR 385 (387)
T ss_pred -----------CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 000135666664 455443333222 125799999774 37888888888876553
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=127.53 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=118.1
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. +++++. .|+++++++|+++ +.+|++++.+|++|.+.|+++|+++||++|++++||++|+.
T Consensus 109 ~G~~---v~~v~~-------~d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~ 172 (397)
T PRK05939 109 LGVE---VTMVDA-------TDVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTS 172 (397)
T ss_pred cCCE---EEEECC-------CCHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccc
Confidence 4554 666654 3689999999765 45888899999999999999999999999999999999976
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeCchh-HHhhhccCCccccccccccccccCCCC-ceecc
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVDYKD-WQITL 162 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~ 162 (310)
+....+. . .++|+++.|+||+++++.+ .|++++.+... ..........|....... ........ .....
T Consensus 173 ~~~~~~~------~-~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 244 (397)
T PRK05939 173 PWLFRPK------D-VGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQ-WGLTQIRKKGLRDM 244 (397)
T ss_pred ccccCcc------c-cCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhh-HHHHHHHHHHHHhc
Confidence 5422111 1 2599999999999998643 23443422210 000000000000000000 00000000 00011
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
|........|..+ .|.+.+..++++..+++..+++.|++.|.+.-+. | | ..++++|.+.+
T Consensus 245 G~~~~p~~a~l~~--rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~ 321 (397)
T PRK05939 245 GATLSSEAAHRIA--IGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD 321 (397)
T ss_pred CCCCCHHHHHHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC
Confidence 1112334444443 4778899999999999999999999999875332 2 1 25678888864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-12 Score=120.18 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.+... .+.+|+++...+++|.+.| +++|.++|++||+++++|++|++.............++ .
T Consensus 166 d~~~le~~l~~~-----~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~-~ 239 (400)
T PTZ00125 166 DVEALEKLLQDP-----NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV-K 239 (400)
T ss_pred CHHHHHHHhCCC-----CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC-C
Confidence 789999998621 2557777777889999888 99999999999999999999864322221111101222 3
Q ss_pred CCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|.++++ |+++++. .+|+++.+++ .. +.+... .... ++ ++-+.....+.++++.+..+
T Consensus 240 pd~~~~s--K~l~~g~~~ig~v~~~~~-~~-~~~~~~--~~~~--------------t~-~~~~~~~~aa~~~l~~i~~~ 298 (400)
T PTZ00125 240 PDIVLLG--KALSGGLYPISAVLANDD-VM-LVIKPG--EHGS--------------TY-GGNPLACAVAVEALEVLKEE 298 (400)
T ss_pred CCEEEEc--ccccCCCcCcEEEEEcHH-HH-hhccCC--CCCC--------------CC-CcCHHHHHHHHHHHHHHHhc
Confidence 6877764 9998764 6788776544 33 222110 0000 00 11122333334445544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+ ..++..++.+++++.|.++ +.+... .+...++.+.+.... .....++.+.|
T Consensus 299 ~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~--------------------~~~~~~~~~~l 354 (400)
T PTZ00125 299 K---LAENAQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSD--------------------GVNAWDLCLKL 354 (400)
T ss_pred C---HHHHHHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCc--------------------chHHHHHHHHH
Confidence 3 3445555667777777553 222222 223444455454311 11124567777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++|. ++.+. +...+|++++ ...++++|+.+++.|.+.+.++
T Consensus 355 ~~~Gv-~v~~~---~~~~lRi~~~-~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 355 KENGL-LAKPT---HDNIIRFAPP-LVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred HHCCe-EEeec---CCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 77774 44432 4578999955 5789999999999999988776
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-13 Score=120.77 Aligned_cols=229 Identities=16% Similarity=0.108 Sum_probs=142.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|++++ +.+|+++++ +. +.++++.+.+|++|.+.|.++|.++|++ +.++++|++
T Consensus 113 ~~~~G~~---i~~v~~~~~--~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~ 176 (349)
T PRK07908 113 LRAAGIP---VHRVVLDPP--FRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEA 176 (349)
T ss_pred HHHcCCE---EEeeccCcc--cCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECc
Confidence 4567777 889999863 578888553 22 3478888999999999999999999964 889999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeee-ecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSL-NAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~-~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
++-.. ... ... ......-+++.+ |++|.++ ...-+|+++.+ +..+.........+ .
T Consensus 177 y~~~~-~~~-~~~-l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~~~~~~----~-------------- 234 (349)
T PRK07908 177 FADAV-PGE-PES-LAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTRGRAHW----P-------------- 234 (349)
T ss_pred chhhc-cCC-ccc-cccccCCCEEEEeecccccCCccceeeeeecC-HHHHHHHHhcCCCC----C--------------
Confidence 86432 111 111 111112345554 8999886 33447888754 44443322111110 0
Q ss_pred ccCCCcchHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRSLKLWFV-LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
.+ .....+... ++......+++..++..++.+++.+.|.++ ++++..++..+.+.+.+...
T Consensus 235 -~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~~-------------- 296 (349)
T PRK07908 235 -VG--TLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVPDA-------------- 296 (349)
T ss_pred -cc--HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECCcH--------------
Confidence 00 001111111 111122456677888888899999999887 78877656677776655431
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..+.+.+.++|.....+.... +.+++|+|+. +++++++|+++|+++..
T Consensus 297 -----------~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~----~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 297 -----------ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR----PRAEVPVLVQALAEILK 346 (349)
T ss_pred -----------HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC----CCccHHHHHHHHHHHHh
Confidence 356666767765444333322 3579999953 57899999999998754
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=120.74 Aligned_cols=246 Identities=13% Similarity=0.053 Sum_probs=145.8
Q ss_pred ceecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++..|.. ++.++.+++ +++.+|+++|++++.+. +.+|+++.++|++|.+.+ +++|+++|++||++++
T Consensus 126 ~~~~g~~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li 196 (387)
T PRK07777 126 IAMAGAH---RVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVI 196 (387)
T ss_pred HHHCCCE---EEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEE
Confidence 3455665 888888764 24679999999998653 346777788899999765 8889999999999999
Q ss_pred eecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 79 VDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
+|.+++...+....+.... .+....+++..|++|.++.| ..+|+++.. +..+. .+.....+....
T Consensus 197 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~l~~-~~~~~~~~~~~~---------- 264 (387)
T PRK07777 197 TDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGP-APLIA-AVRAAKQYLTYV---------- 264 (387)
T ss_pred EeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecC-HHHHH-HHHHHHhhcccC----------
Confidence 9999865433211111111 11223568889999999865 236776643 43332 221111111100
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.+ ......+..++. .+....++..++..++.+.+.+.|.+. ++++..+.....+.+.+.+...
T Consensus 265 ------~~-~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~-------- 327 (387)
T PRK07777 265 ------GG-APFQPAVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPLGY-------- 327 (387)
T ss_pred ------CC-CHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEecccccCC--------
Confidence 00 011111122222 234556677788888999999999886 7776533333334444432110
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E-----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAV-L-----GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-----~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
....++.+.|.++..+.+.+.. + .+.+.+|+++. .++++++..++.|+++.
T Consensus 328 ------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~---~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 328 ------------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC---KRDDTLDEAIRRLRALR 384 (387)
T ss_pred ------------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec---CCHHHHHHHHHHHHHHh
Confidence 0114567777543334444432 2 12468999965 35888888888887653
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=122.06 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=138.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh-CcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF-GIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~-g~~l~vD~ 81 (310)
++..|+. ++.+|.++ ++.+|++.++ .+ ++ +.+|++++++|++|.+.|.+++.++++.. ++++++|+
T Consensus 119 ~~~~g~~---v~~v~~~~--~~~~~~~~l~-~~-~~------~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDe 185 (354)
T PRK04635 119 AETFNVG---VKALPLTA--DYQLPLDYIE-QL-DG------AKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDE 185 (354)
T ss_pred HHHcCCE---EEEEecCC--CCCCCHHHHH-hc-cC------CCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeC
Confidence 4567777 99999975 3579999887 33 22 44788889999999999999999998874 79999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
++.-+... ............+ ++..|++|+++.| ..+|+++.+ ++.+........+|.
T Consensus 186 ay~~~~~~-~s~~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~~~~------------------ 244 (354)
T PRK04635 186 AYIEFCPE-YSVADLLASYPNL-VVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIAPYP------------------ 244 (354)
T ss_pred chHhhccC-cchHHHHhhCCCE-EEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcCCCC------------------
Confidence 98644311 1111111111111 4568999998633 346887654 434432211111110
Q ss_pred ccCCCcchHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 161 TLSRRFRSLKLWFVLRNY---GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.......+++..+ +.+.+++..++..+..+++.+.|.+++++++. ++..+.+.+.+...
T Consensus 245 -----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~~------------ 306 (354)
T PRK04635 245 -----VPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFDDV------------ 306 (354)
T ss_pred -----CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECCCH------------
Confidence 0111112222222 23445556667777788899999988667765 45555555544321
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.++.+.+.+.|............+++|+|+ .+++|+++++++|++.
T Consensus 307 -------------~~~~~~l~~~gv~v~~~~~~~~~~~lRis~----~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 307 -------------DAVFKALWDAGIVARAYKDPRLANCIRFSF----SNRAETDKLIGLIRNQ 352 (354)
T ss_pred -------------HHHHHHHHHCCEEEEECCCCCCCCeEEEEe----CCHHHHHHHHHHHHHh
Confidence 345566666765332221112346899994 3689999999999753
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-12 Score=116.90 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=144.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh-CcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF-GIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~-g~~l~vD~ 81 (310)
++..|+. ++.+|.++ ++.+|+++|++ . ...+++..++|++|.+.|.+++.++++.+ |+++++|.
T Consensus 118 ~~~~g~~---~~~v~~~~--~~~~d~~~l~~----~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe 182 (353)
T PRK05387 118 AGLYGIP---YEEIPLDD--DFSIDVEDYLR----P------NGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDE 182 (353)
T ss_pred HHHcCCE---EEEeecCC--CCCCCHHHHHh----c------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 3556776 88999875 35899999863 1 12678888999999999999999999886 99999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+++.+. ........... .-.++..|++|.++.| .-+|+++. ++..+.........+ ...
T Consensus 183 ~y~~~~--~~~~~~~~~~~-~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~-~~~--------------- 242 (353)
T PRK05387 183 AYVDFG--GESAIPLIDRY-PNLLVVQTFSKSRSLAGLRVGFAIG-HPELIEALNRVKNSF-NSY--------------- 242 (353)
T ss_pred cccccC--CcchHHHHhhC-CCEEEEEehhHhhcchhhhceeeec-CHHHHHHHHHhhccC-CCC---------------
Confidence 985332 11111111111 2357889999998754 34677764 454433221111000 000
Q ss_pred ccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
........++...+ ..+.+++..++..++.+++.+.|+++ ++.+. ++..+++.+...+.+
T Consensus 243 ----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~------------- 303 (353)
T PRK05387 243 ----PLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSHD------------- 303 (353)
T ss_pred ----CcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCCC-------------
Confidence 00112222222333 23456777888888999999999887 77764 455666655543211
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.|.++|............+++|+++. +++++++++++|+++..
T Consensus 304 ----------~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~----~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 304 ----------AAELAAKLRERGIIVRHFNKPRIDQFLRITIG----TDEEMEALVDALKEILA 352 (353)
T ss_pred ----------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHhh
Confidence 13566777777754322111123568999954 46899999999988653
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=120.48 Aligned_cols=189 Identities=11% Similarity=0.056 Sum_probs=115.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
...|+. ++.+|.++++.+.+|+++|++.+.+. +.++++++++|++|.+.+ +++|+++|++||+++++|
T Consensus 139 ~~~g~~---~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~D 209 (394)
T PRK05942 139 LIAGAQ---IYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHD 209 (394)
T ss_pred HHcCCE---EEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEe
Confidence 456666 89999986545679999999998654 447777788999999988 888999999999999999
Q ss_pred cccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++++-........... ........++..|+.|.++.| ..+|+++. ++..+....... .+.....
T Consensus 210 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~-~~~l~~~l~~~~-~~~~~~~----------- 276 (394)
T PRK05942 210 LCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG-NRHIIQGLRTLK-TNLDYGI----------- 276 (394)
T ss_pred ccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeec-CHHHHHHHHHHH-hhcccCC-----------
Confidence 9986443321110110 011112345567888988644 44788865 444443221111 0000000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVS 223 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~ 223 (310)
+ ......+..+++ ......++..++..++.+.+.+.|.+. ++.+. ++..+ .+.+.++
T Consensus 277 -----~-~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~~~~f~~~~~~ 334 (394)
T PRK05942 277 -----F-SALQKAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGEL-GWNIP-PTKATMYLWVPCP 334 (394)
T ss_pred -----C-HHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeeEEEEECC
Confidence 0 011122223332 124456777778888888899999876 77765 44555 3444444
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=121.90 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=141.9
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEe
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHV 79 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~v 79 (310)
+++..|+. ++.+|.++ ++.+|++++++++. . +.+|++..++|++|.+.+.+++.++++.. +.++++
T Consensus 115 ~~~~~G~~---~~~v~~~~--~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~viv 182 (351)
T PRK01688 115 SAETIGVE---IRTVPTLD--NWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVA 182 (351)
T ss_pred HHHHcCCE---EEEeecCC--CCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 35567877 89999975 36899999999873 2 34777889999999999877766666532 689999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|+|+.-+... ........... -=++.-|++|+++.| .-+|+++. +++.+........+|-
T Consensus 183 DEay~~f~~~-~s~~~~~~~~~-n~iv~rSfSK~~glaGlRiGy~i~-~~~~i~~l~~~~~~~~---------------- 243 (351)
T PRK01688 183 DEAYIEFCPQ-ASLAGWLAEYP-HLVILRTLSKAFALAGLRCGFTLA-NEEVINLLLKVIAPYP---------------- 243 (351)
T ss_pred ECchhhcCCC-CChHHHHhhCC-CEEEEecchHhhcCHHHHHhHHhC-CHHHHHHHHhccCCCC----------------
Confidence 9998544311 11111111111 124668999988744 33577764 4444432211111110
Q ss_pred eeccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
. ..+...++...+. .+.+++..++..+..+++.+.|.++++++.+.++..+.+.+.+.+.
T Consensus 244 ---v----~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~~---------- 306 (351)
T PRK01688 244 ---L----STPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTAS---------- 306 (351)
T ss_pred ---C----CHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCH----------
Confidence 0 1111112222222 2455666777777888999999888887544466777766655421
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.++.+.|.++|......... +..+++|+|+. +++|+++|+++|+
T Consensus 307 ---------------~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~~~e~~~l~~al~ 351 (351)
T PRK01688 307 ---------------SAVFKSLWDQGIILRDQNKQPGLSNCLRITIG----TREECQRVIDALR 351 (351)
T ss_pred ---------------HHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC----CHHHHHHHHHhhC
Confidence 46777787887654433222 23568999955 5799999999874
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=120.27 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=111.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
..+|+. +++++.. +.++++++|+++ +.+|++..++|++|.+.++++|+++|+++|+++++|++|
T Consensus 126 ~~~Gi~---v~~vd~~-------~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~ 189 (394)
T PRK07050 126 RDFGIT---VRFYDPL-------IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTY 189 (394)
T ss_pred HhcCeE---EEEECCC-------CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCc
Confidence 345665 6666542 346788888764 448888889999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....+ .. .++|+++.|.+|++++..+ .|++++++++...+..... .+++
T Consensus 190 a~~~~~~~----l~---~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~-~~~G------------------ 243 (394)
T PRK07050 190 SAGLAFKP----FE---HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR-MRLG------------------ 243 (394)
T ss_pred ccccccCH----HH---cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH-HhcC------------------
Confidence 77654222 11 1589999999999987655 4556666665443321110 0110
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
-...+...|.+++ +...+..++++.++++..+.+.|++.|++.-+
T Consensus 244 --~~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v 288 (394)
T PRK07050 244 --IGVSADDCSLVLR--GLPSLQVRLAAHDRSALEVAEWLKARPEIATV 288 (394)
T ss_pred --CCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 0112344455544 44567779999999999999999998887643
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=116.92 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=147.8
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a 82 (310)
.|+. ++.||+++++++.+|++++++++....+.+..+.+++++.++|++|.+.+ +++|+++|++||+++++|.+
T Consensus 164 ~G~~---vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEi 240 (496)
T PLN02376 164 TGVE---IIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEI 240 (496)
T ss_pred CCCE---EEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcC
Confidence 5676 99999976445689999999887654332334667788889999999988 56688899999999999999
Q ss_pred cccccccChhhhh---hhcCC--C--CCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccc
Q 046506 83 YAGSACICPEFRH---FIDGV--E--GAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 83 ~~~~~~~~~~~~~---~~~~~--~--~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
++...+..+.+.. ..... . ..+ .+..|.+|.++.| .-+|+++..++.. .........+.. .
T Consensus 241 Y~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l-~~~~~~~~~~~~-v------- 311 (496)
T PLN02376 241 YAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSV-VSCARKMSSFGL-V------- 311 (496)
T ss_pred ccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHH-HHHHHHHhhcCC-C-------
Confidence 9765432211111 11110 0 112 2357999999755 6688887755543 232211101100 0
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcc
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYGVAN-----LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAV 227 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~ 227 (310)
..+...++...+.... +.+..++..+..+.+.+.|.+. ++.+..+..+..+.+.+.....
T Consensus 312 --------------s~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~ 376 (496)
T PLN02376 312 --------------SSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLRHLLR 376 (496)
T ss_pred --------------CHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEchhhhc
Confidence 1112222222332222 2233555666677788888775 7776543333445555533100
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEE-eEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTH-AVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+... .....++.+.+.++.++.+.| ... ...+++|+++.+ .+++.++..++.|++++.+
T Consensus 377 --------------~~~~-~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~--~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 377 --------------DRNS-FESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN--MDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred --------------cCCc-hhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC--CCHHHHHHHHHHHHHHHHH
Confidence 0000 011135666666653344444 333 235799999774 4578899999888887753
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=119.39 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=143.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~vD 80 (310)
+...|.. ++.+|.+ + +.+|++++++++++. +.++++.+++|++|.+.|.++|.++++. +|+++++|
T Consensus 122 ~~~~g~~---~~~~~~~-~--~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~D 189 (359)
T PRK03158 122 AIIEGAE---VREVPLK-D--GGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLD 189 (359)
T ss_pred HHHcCCe---EEEEecC-C--CCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 3455666 8999997 2 379999999988653 3467778899999999999999998887 59999999
Q ss_pred cccccccccCh--hhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
.++........ ......... .-.++..|+.|.++.| .-+|+++. +++.+.........+ .
T Consensus 190 e~y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~----~----------- 252 (359)
T PRK03158 190 EAYYEYVTAEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALRVGYGIA-SEELIEKLNIARPPF----N----------- 252 (359)
T ss_pred CchHhhcCCcccccHHHHHHhc-CCEEEEEechHhhcCcchhhehhcC-CHHHHHHHHHhcCCC----C-----------
Confidence 99865443211 000111111 2346668999998755 33477664 444443221111111 0
Q ss_pred ceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
...++..++...+. .+..++..+...+..+++.+.|.+. ++.+. ++..+.+.+.+...
T Consensus 253 --------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~~~----------- 311 (359)
T PRK03158 253 --------TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTGRD----------- 311 (359)
T ss_pred --------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECCCC-----------
Confidence 12223333333332 2345555666677777888888876 77765 44555555544211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.|.+.|.....+...+..+++|+++. ++++++.++++|+++
T Consensus 312 -------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~----~~~~~~~l~~al~~~ 358 (359)
T PRK03158 312 -------------ANELFEALLKKGYIVRSGAALGFPTGVRITIG----LKEQNDKIIELLKEL 358 (359)
T ss_pred -------------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHh
Confidence 13566777777754444333334578999944 688999999999875
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=118.61 Aligned_cols=247 Identities=13% Similarity=0.125 Sum_probs=147.4
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCc-cccc---CChHHHHHHHHHhCcEEEeecccccc-cccCh----hh
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTA-ITAV---DTLKPLCDVAKQFGIWVHVDAAYAGS-ACICP----EF 93 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~-~G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~-~~~~~----~~ 93 (310)
++.+|+++|+++|++....+ .+ +|+++...|. .|.. .++++|.++|++||+++|.|+|+..+ +++.. .+
T Consensus 151 ~GniD~~~Le~aI~~~~~~~-~~-lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~ 228 (450)
T TIGR02618 151 KGNVDLKKLQKLIDEVGADK-IP-YICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGY 228 (450)
T ss_pred CCCcCHHHHHHHhccccCcc-cC-ceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccc
Confidence 46899999999998643212 22 4555444444 4676 55899999999999999999999773 33221 11
Q ss_pred h-----hhhcC-CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcc
Q 046506 94 R-----HFIDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 167 (310)
Q Consensus 94 ~-----~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (310)
. +.... ..++|.+++|+||.+++|. .|++.+++++++.+.......| .+. ..+..-.+|..
T Consensus 229 ~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~-GG~l~~~d~~l~~k~r~~~~~~-eG~----------~tyGgla~r~~- 295 (450)
T TIGR02618 229 EDKSIAEILKEMMSYADGCTMSGKKDCLVNI-GGFLCMNDDEMFQSAKELVVVF-EGM----------PSYGGLAGRDM- 295 (450)
T ss_pred cCCCHHHHHHHHhccCcEEEEeeccCCCCCC-ceEEEeCCHHHHHHHHHHhhhc-CCc----------cccCchhhhhH-
Confidence 1 11111 3469999999999999997 3555568887765553332222 110 00010111111
Q ss_pred hHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 168 SLKLWFVLRNYGVANL-RHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
.++..++. +.. ....++....+++|.+.|.+. |+.++.++.++.|.+.......+ .+.++
T Consensus 296 -~ala~gL~----e~~~~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph------------~~~~~- 356 (450)
T TIGR02618 296 -EAMAIGIR----EAVDYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPH------------IPQDQ- 356 (450)
T ss_pred -HHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCC------------CChhh-
Confidence 11122222 222 245566667799999999987 99998788888887766541100 01111
Q ss_pred HHHHHHHHHHHHh-cCcEEEE-EeE-----EC-------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINA-SGKAYMT-HAV-----LG-------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 247 ~~~~~~l~~~l~~-~g~~~~~-~~~-----~~-------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
--.+.+.-.|.. .|+-.+. ++. ++ ....+|+.+..---|.+++|.+.+++.++.++.
T Consensus 357 -~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 357 -FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred -ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 112344444443 3432222 111 11 136899998866678899999999999988653
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-13 Score=121.07 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=113.9
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++++++++.+.+.+++ . .+.+|.+.+.+|.++.+.|+++|+++||++| ++||++++
T Consensus 126 ~~Gi~---v~fvd~~~~~~~~l~~---------~-----~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~ 186 (384)
T PRK06434 126 TLGIH---VDYIDTDRLNSLDFDP---------S-----NYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFA 186 (384)
T ss_pred hcCcE---EEEECCCChhheeecC---------C-----CeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCC
Confidence 45666 8888876422222222 1 1458888999999999999999999999998 56799996
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+...-+. + .++|++++|+||+++++.+ .|++..++++...+..... .. .
T Consensus 187 s~~~~~pl------~-~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~----~~-----------------~ 238 (384)
T PRK06434 187 SPYNQNPL------D-LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERR----KT-----------------L 238 (384)
T ss_pred CcccCCch------h-cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHH----Hh-----------------c
Confidence 55432121 1 2699999999999998765 5666565554332221110 00 0
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------~~~~v~~~~~~ 224 (310)
|.....+.+|.. ..+...++.++++.+++++.+.+.|.++|.++-+.-| ..++++|.+.+
T Consensus 239 G~~~~~~~A~l~--~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 239 GSNPDPIQAYLA--LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred CCCCCHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 111123333433 3466889999999999999999999999988533222 25688888863
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=124.80 Aligned_cols=177 Identities=20% Similarity=0.233 Sum_probs=111.9
Q ss_pred ecCCCCCCEEEEecCCCC---CcccCH-----HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcE
Q 046506 5 IVGIDVKNFRAIKTTKSS---SYGLSP-----DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIW 76 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~---~~~id~-----~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~ 76 (310)
+.|+. .+++++..++ .+.+++ +.++++|++...... +.+|++ ..+|..|.+.++++|+++||++|+.
T Consensus 125 l~ga~---Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvl-t~PTY~Gv~~di~~I~~~~h~~~~~ 199 (417)
T PF01276_consen 125 LSGAI---PVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVL-TSPTYYGVCYDIKEIAEICHKHGIP 199 (417)
T ss_dssp HHTEE---EEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEE-ESS-TTSEEE-HHHHHHHHCCTECE
T ss_pred HcCCe---EEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEE-eCCCCCeEEECHHHHHHHhcccCCE
Confidence 34554 7777775221 114566 999999988644221 334555 4556689999999999999999999
Q ss_pred EEeecccccccccChhhhhhhcCCCCCC-------eeeeecccccccccceEEEEEeCch-h----HHhhh----ccCCc
Q 046506 77 VHVDAAYAGSACICPEFRHFIDGVEGAD-------SFSLNAHKWFFTTLDCCCLWVKDPS-D----LVNSL----STNPE 140 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~~~~~~~~D-------~~~~~~hK~l~~p~g~g~l~v~~~~-~----~~~~~----~~~~~ 140 (310)
|+||+|||+...+.+...... . .++| +++-|.||++.+..+++++++++.. . +.+.+ +.+|.
T Consensus 200 llvDEAhGah~~F~~lp~~a~-~-~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPS 277 (417)
T PF01276_consen 200 LLVDEAHGAHFGFHPLPRSAL-A-LGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPS 277 (417)
T ss_dssp EEEE-TT-TTGGCSGGGTTCS-S-TTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--
T ss_pred EEEEccccccccCCCCccchh-h-ccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChH
Confidence 999999988877664333221 1 3699 9999999999999999999999874 2 21211 22333
Q ss_pred cccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH---cCCCCeEEecC
Q 046506 141 YLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLV---GSDKRFEVVFP 212 (310)
Q Consensus 141 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L---~~~~~~~v~~~ 212 (310)
|+.. +++-.+.+.+....-++++++..++++.+++.| .++++|+++.+
T Consensus 278 Y~lm------------------------ASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 278 YPLM------------------------ASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp HHHH------------------------HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-
T ss_pred HHHH------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Confidence 3221 222233333433444567778888888899988 67888888765
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-12 Score=118.38 Aligned_cols=250 Identities=9% Similarity=0.013 Sum_probs=141.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.++++.++++.+|++++++++++. +.++++++++|++|.+.+ +++|+++|+++|+++++|
T Consensus 137 ~~~g~~---~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 207 (404)
T PRK09265 137 SLSGGK---PVHYLCDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFAD 207 (404)
T ss_pred HHcCCE---EEEEecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345555 77888775445689999999998654 347788889999999998 899999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCee-eeecccccccc-cceEEEEEe-CchhHH---hhhccCCccccccccccccccC
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSF-SLNAHKWFFTT-LDCCCLWVK-DPSDLV---NSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~-~~~~hK~l~~p-~g~g~l~v~-~~~~~~---~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
.+++..............-.....++ ..|..|.++.| .-+|+++.. ++...+ +.+... .+...
T Consensus 208 e~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~---------- 276 (404)
T PRK09265 208 EIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRL---------- 276 (404)
T ss_pred hhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hcccc----------
Confidence 99864432211111110101112334 46678998655 336777653 332111 111000 00000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCH-HHHHHHH---HHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGV-ANLRHFL---RSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~---~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~ 230 (310)
. ...+...++...+.. +.+++.. ++..+..+.+.+.|.+++++++..+.....+.+.+.+...
T Consensus 277 ------~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~--- 343 (404)
T PRK09265 277 ------C----ANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY--- 343 (404)
T ss_pred ------C----CCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEeccccc---
Confidence 0 011112222222221 2222222 3555667788888888778776533334445445543100
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+. ......+...+.+.|.....+... .+.+++|+++. .++|+++..++.|++.+..
T Consensus 344 -----------~~---~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~---~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 344 -----------PI---HDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL---PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred -----------CC---CCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHH
Confidence 00 000123445556666544433332 23578999963 5789999999999887754
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-12 Score=118.21 Aligned_cols=250 Identities=11% Similarity=0.084 Sum_probs=146.1
Q ss_pred ceecCCCCCCEEEE-ecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAI-KTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v-~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++.+|.. ++.+ +.+++ .+.+|+++|++++.+. +.++++++++|.+|.+.+ +++|+++|+++|++++
T Consensus 134 ~~~~g~~---~v~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 134 VKFYGGV---PVEYRTIEEE-GWQPDIDDIRKKITEK------TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred HHHcCCE---EEEecccccc-CCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEE
Confidence 3445554 6666 45443 4679999999998654 347778899999999887 8899999999999999
Q ss_pred eecccccccccChhhhhhhcCCCCC-C-eeeeeccccccc-ccceEEEEEe-CchhHHhhhccCCccccccccccccccC
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGA-D-SFSLNAHKWFFT-TLDCCCLWVK-DPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~-D-~~~~~~hK~l~~-p~g~g~l~v~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
+|++++......+ ... ...+... . ++..|.+|+++. ...+|++++. ++..+.........+...
T Consensus 204 ~Deay~~~~~~~~-~~~-~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~---------- 271 (398)
T PRK08363 204 SDEIYDLMTYEGK-HVS-PGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARI---------- 271 (398)
T ss_pred EhhhhhhhccCCc-ccC-HHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcc----------
Confidence 9999864432111 100 1111111 2 345799999654 4668888873 333222211000000000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE-EEcCCcchhhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF-RVSPSAVMDKLKT 233 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~-~~~~~~~~~~~~~ 233 (310)
.+..+ ......+..++.. ..+.+++..++..++.+.+.+.|.+++++.+. +|..+.+.| .+.+...
T Consensus 272 ----~~~~s-~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~------ 338 (398)
T PRK08363 272 ----RLCPN-TPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGPW------ 338 (398)
T ss_pred ----cccCC-hHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEeccCCC------
Confidence 00000 0111222223321 24567777888888889999999888887764 556665555 4443100
Q ss_pred hhccccchhHHHHHHHHHHH-HHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNREL-LESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+ ..++ ...+.+.|.....+.... +.+++|+|+. .++++++..++.|++++...
T Consensus 339 -------~~-------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~---~~~~~l~~~l~~l~~~~~~~ 395 (398)
T PRK08363 339 -------KD-------DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL---PPVEILEEAMDRFEEFMRER 395 (398)
T ss_pred -------CC-------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 00 0233 333456665444433332 3469999964 35888999999998877553
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-12 Score=121.52 Aligned_cols=249 Identities=10% Similarity=0.015 Sum_probs=144.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+.++|.. ++.+++++++++.+|+++|++++++++ .++++..++|++|.+.+ +++|+++|++||+++++
T Consensus 249 ~~~~g~~---~v~~~~~~~~~~~~d~~~l~~~~~~~~------k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 249 VNLAGGT---AVHYRCDEQSEWYPDIDDIRSKITSRT------KAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred HHHCCCE---EEEeecCcccCCCCCHHHHHHhcCcCc------eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 4456766 899999876568899999999997653 47888889999999988 88899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeee-eecccccccc-cceEEEEEe-CchhHH---hhhccCCcccccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFS-LNAHKWFFTT-LDCCCLWVK-DPSDLV---NSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~-~~~hK~l~~p-~g~g~l~v~-~~~~~~---~~~~~~~~y~~~~~~~~~~~~ 153 (310)
|.++.-..+....+..........-+++ .|+.|.++.| .-+|++++. ++..+. ..+..... ...
T Consensus 320 DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~-~~~--------- 389 (517)
T PRK13355 320 DEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLAN-MRL--------- 389 (517)
T ss_pred ehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhc-CcC---------
Confidence 9998644332211111111111121332 5779997654 337887764 232211 11100000 000
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE-EEcCCcc
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGV-----ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF-RVSPSAV 227 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~-~~~~~~~ 227 (310)
+ ......+++...+.. +.+.+ .++..+..+++.+.|.++|++++. +|..+.+.| .+.....
T Consensus 390 --------~---~~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~~~l~~~~~ 456 (517)
T PRK13355 390 --------C---SNVPAQSIVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAV-KPKAAFYIFPKIDVKKF 456 (517)
T ss_pred --------C---cChHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccC-CCCeeeEEEeecCcccC
Confidence 0 111222222222321 12222 234445567888999888888865 566666555 4432100
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+.. . -.+.+.+.|.+.|.....+... .+.+++|+|+. .++++++..++.|++.+..
T Consensus 457 ------------~~~----~-~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~---~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 457 ------------NIH----D-DEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL---PRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred ------------CCC----C-HHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC---CCHHHHHHHHHHHHHHHHH
Confidence 000 0 0022334455666555444433 24679999963 5788999999888887754
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=117.53 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=125.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccc--cChhhh-hhhcC-CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSAC--ICPEFR-HFIDG-VE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~--~~~~~~-~~~~~-~~ 101 (310)
.|+++|++++++. +.++++..+.+.+|.+.|+++|.++|++||+++++|++|+.+.+ ...... ..... ..
T Consensus 167 ~d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~ 240 (402)
T PRK07505 167 NDLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLN 240 (402)
T ss_pred CCHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCC
Confidence 3789999988653 23666667778889999999999999999999999999853221 111111 01111 12
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 180 (310)
...+++.+..|.++.+ | |++.+.+++..........+|.+ .++.. ....++.++++.+..
T Consensus 241 d~~i~~~s~sK~~~~~-G-g~~~~~~~~~~~~~~~~~~~~t~-----------------~~~~~~~a~aa~~a~l~~~~~ 301 (402)
T PRK07505 241 ERTIIAASLGKAFGAS-G-GVIMLGDAEQIELILRYAGPLAF-----------------SQSLNVAALGAILASAEIHLS 301 (402)
T ss_pred CCeEEEEechhhhhcc-C-eEEEeCCHHHHHHHHHhCCCcee-----------------CCCCCHHHHHHHHHHHHHHhc
Confidence 2345667899998765 2 55554555443222111112211 11111 122333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+.+.++.++..++.+.+.+.+... .......+..+.+.. .....++.+.|.++
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~~~~~----------------------~~~~~~~~~~l~~~ 354 (402)
T PRK07505 302 EELDQLQQKLQNNIALFDSLIPTE-----QSGSFLPIRLIYIGD----------------------EDTAIKAAKQLLDR 354 (402)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCEEEEEeCC----------------------HHHHHHHHHHHHHC
Confidence 444555555544444443332111 111222232232221 11224677888888
Q ss_pred CcEEEEEeEE---CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVL---GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 261 g~~~~~~~~~---~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
|.+....... .+..+||++++ ..+|+||+++++++|++++.+
T Consensus 355 Gi~v~~~~~p~~~~~~~~lRi~~~-~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 355 GFYTSPVFFPVVAKGRAGLRIMFR-ASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCeEeeecCCCCCCCCceEEEecC-ccCCHHHHHHHHHHHHHHHHh
Confidence 8654332111 23468999966 578999999999999987643
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=117.70 Aligned_cols=209 Identities=14% Similarity=-0.000 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
|++++++++.+ +.++++++++|++|.+.+ +++|+++|+++|+++++|.++...... ........ ...-
T Consensus 115 d~~~l~~~~~~-------~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~-~~~~ 185 (330)
T TIGR01140 115 DLDRLPAALEE-------LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-ASLAPQAA-RFPG 185 (330)
T ss_pred CHHHHHhhccc-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-cchhhHhc-cCCC
Confidence 67888888732 226778889999999998 777889999999999999999655422 11111111 1124
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH-H
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV-A 181 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 181 (310)
++++.|++|+++.| ..+|++++.++ .+.......+.+ ....+...++...+.. +
T Consensus 186 ~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~l~~~~~~~-----------------------~~s~~~q~~~~~~l~~~~ 241 (330)
T TIGR01140 186 LVVLRSLTKFFGLAGLRLGFVVAHPA-LLARLREALGPW-----------------------TVNGPARAAGRAALADTA 241 (330)
T ss_pred EEEEEecchhhcCchhhhhheeCCHH-HHHHHHhcCCCC-----------------------CchHHHHHHHHHHHhchH
Confidence 57889999999855 44688876543 443322211110 0012223333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
..+...++..++.+.+.+.|++++.+++. ++....+.+.+.. ..++.+.|.++|
T Consensus 242 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~-------------------------~~~l~~~l~~~g 295 (330)
T TIGR01140 242 WQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPD-------------------------AAALHEALARRG 295 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCC-------------------------HHHHHHHHHHCC
Confidence 34677788889999999999988666654 3344444443322 136778888876
Q ss_pred cEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 262 KAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 262 ~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.+...+..+. +.+++|+++. +..++ ++|+++|+
T Consensus 296 i~v~pg~~f~~~~~~~iRi~~~---~~~~~-~~~~~~l~ 330 (330)
T TIGR01140 296 ILIRDFDNFPGLDPRYLRFALP---TDEEN-DRLEEALA 330 (330)
T ss_pred EEEEECCCCCCCCCCEEEEEec---CHHHH-HHHHHhhC
Confidence 5444433332 3468999965 33456 88888763
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-12 Score=116.02 Aligned_cols=246 Identities=13% Similarity=0.108 Sum_probs=145.0
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-ccc---CChHHHHHHHHHhCcEEEeecccccccc-cC----hhh
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAV---DTLKPLCDVAKQFGIWVHVDAAYAGSAC-IC----PEF 93 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~~-~~----~~~ 93 (310)
+|.+|+++|+++|++.+... +.+++++...+.. |.. .++++|.++|++||++||.|+||..+.. +. ..+
T Consensus 158 tgnlD~d~Le~~I~~~~~~~--~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y 235 (460)
T PRK13237 158 KGNVDLDKLQALIDEVGAEN--IAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGY 235 (460)
T ss_pred CCCcCHHHHHHHhccccCCc--cCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccccc
Confidence 56899999999998643211 2245555555555 544 3689999999999999999999976632 11 111
Q ss_pred hhh-----hcC-CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcc
Q 046506 94 RHF-----IDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 167 (310)
Q Consensus 94 ~~~-----~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (310)
.+. ..+ ..++|.+++|+||.+.+|. .|++.++++++..+.....+.|-+. +.| .-..+|...
T Consensus 236 ~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~--------~ty---gg~~grd~~ 303 (460)
T PRK13237 236 QDKSIKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGM--------PSY---GGMAGRDME 303 (460)
T ss_pred CCCcHhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCC--------cCC---CChhhhHHH
Confidence 111 111 2469999999999999876 5677788887665543332222111 001 001122222
Q ss_pred hHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 168 SLKLWFVLRNYGVANL-RHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
++ ...+. ++. ....++..+.+++|.+.|.+- |+.+..|.....+.+.......+ . |..
T Consensus 304 al--Avgl~----E~~~~~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph-----~-----~~~---- 362 (460)
T PRK13237 304 AM--AIGIE----ESVQYEYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPH-----L-----PQD---- 362 (460)
T ss_pred HH--HhHHH----hhchHHHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCC-----C-----Ccc----
Confidence 22 12222 222 266777778899999999875 99998766665554443321000 0 011
Q ss_pred HHHHHHHHHHHHh-cCcEEEE-EeE-----EC-------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINA-SGKAYMT-HAV-----LG-------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 247 ~~~~~~l~~~l~~-~g~~~~~-~~~-----~~-------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+--.+.+.-.|.. .|+-.+. ++. .+ ....+|+.+..---|.+++|.+.+++.++.++
T Consensus 363 ~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 363 QFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred cChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 0111344444443 3332221 111 11 13689999886667889999999999998865
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-12 Score=117.88 Aligned_cols=254 Identities=11% Similarity=0.047 Sum_probs=147.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC---ChHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD---TLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---pl~~I~~l~~~~g~~l~v 79 (310)
+...|+. ++.+|+++.+.+.+|+++|++++++. +..+++++++|.+|.+. ++++|+++|++||+++++
T Consensus 137 ~~~~g~~---~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 137 AAFRHLE---VRYVDLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred HHHcCCE---EEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456776 89999865334689999999988654 34788888999999984 588999999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeC-------chhHHhhhccCCcccccccccc
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKD-------PSDLVNSLSTNPEYLKNKATES 149 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~-------~~~~~~~~~~~~~y~~~~~~~~ 149 (310)
|.+++............ .... .-=++..|+.|.++.| .-+|+++..+ +..+....... .....
T Consensus 208 De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~----- 280 (409)
T PLN02656 208 DEVYGHLAFGSNPFVPMGVFGSI-VPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYF-DILGG----- 280 (409)
T ss_pred ehhhhhcccCCCCcccHHHhccc-CcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHH-hhhcC-----
Confidence 99987443322111110 0110 0124568899986655 5577777643 22222211000 00000
Q ss_pred ccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc-eEEEEEEcCCcch
Q 046506 150 KQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF-AVVCFRVSPSAVM 228 (310)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-~~v~~~~~~~~~~ 228 (310)
........+..+++......+++..++..+..+.+.+.|.+++++....+|.. ..+.+.+.....
T Consensus 281 -------------~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~- 346 (409)
T PLN02656 281 -------------PATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL- 346 (409)
T ss_pred -------------CCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhc-
Confidence 00011222222332212345677777888888889999988765543224444 344444431100
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+. ......+...+.+.|.....+...+..+++|+++.. ++++++..++.|++.+.+.
T Consensus 347 ------------~~~---~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~---~~e~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 347 ------------EDI---SDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA---DPSSLEEALGRIKSFYLRH 404 (409)
T ss_pred ------------CCC---CCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC---CHHHHHHHHHHHHHHHHHh
Confidence 000 000012334455666655544444556799999763 5788888888888876543
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-12 Score=116.12 Aligned_cols=255 Identities=11% Similarity=0.066 Sum_probs=147.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+...|+. ++.++.++.+++.+|+++|++++.+. +..+++..++|++|.+.+ +++|+++|++||+++++
T Consensus 138 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 138 AIFHHLE---IRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred HHHcCCE---EEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 3456666 88888864335689999999988654 346777788999999987 77888999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCC--Ceeeeecccccccc-cceEEEEEeCchhHHh------hhccCCccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGA--DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVN------SLSTNPEYLKNKATESK 150 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~--D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~------~~~~~~~y~~~~~~~~~ 150 (310)
|.++.........+.. ...+... =++..|..|.++.| .-+|+++..++..+.+ .+.. .... .
T Consensus 209 De~Y~~l~~~~~~~~~-~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~---~~~~-~---- 279 (409)
T PLN00143 209 DEVYGHIVFGSKPFVP-MGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKK---ALNP-A---- 279 (409)
T ss_pred EccccccccCCCCCcc-hhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHH---HHhc-c----
Confidence 9998654332111110 0111111 14668999996655 5577777644321111 1100 0000 0
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-ceEEEEEEcCCcchh
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-FAVVCFRVSPSAVMD 229 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-~~~v~~~~~~~~~~~ 229 (310)
..+-.....++..++.....+.+++..++..+..+.+.+.|.++++......|. +..+.+++.....
T Consensus 280 ----------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~-- 347 (409)
T PLN00143 280 ----------PFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLL-- 347 (409)
T ss_pred ----------CCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhc--
Confidence 000001111122222211234677888888888888999998875543333443 4455555542100
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHH-HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESI-NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ . +. ...++...+ .+.|.....+......+++|+++. +++++++..++.|++.+....
T Consensus 348 ----------~-~---~~-~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~---~~~~~l~~al~rl~~~l~~~~ 406 (409)
T PLN00143 348 ----------E-D---IE-DDMEFCLKLAKEESLIILPGVTVGLKNWLRITFA---VEQSSLEDGLGRLKSFCGRHA 406 (409)
T ss_pred ----------C-C---CC-CHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEc---CCHHHHHHHHHHHHHHHHHhc
Confidence 0 0 00 012333333 456655554444455689999966 358899999999988876543
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-13 Score=122.67 Aligned_cols=241 Identities=11% Similarity=0.044 Sum_probs=142.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|.++. ++.+|++++++++++. +.++++++.+|++|.+ .++++|.++|++||+++++
T Consensus 132 ~~~~g~~---~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 132 IELAGGR---AVRVALQPP-DFRVDWQRFAAAISPR------TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred HHHcCCE---EEEEecCcc-cccCCHHHHHHhcCcc------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEE
Confidence 4556766 999999754 4789999999999654 3477777888999986 5688899999999999999
Q ss_pred ecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++............. .+...-.++..|+.|.++.| .-+|+++. +++.+....... .+....
T Consensus 202 De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~-~~~l~~~~~~~~-~~~~~~----------- 268 (386)
T PRK09082 202 DEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVA-PAALSAEFRKVH-QYNTFT----------- 268 (386)
T ss_pred ehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhC-CHHHHHHHHHHH-hhhcCC-----------
Confidence 999864433211111111 11112346778999998755 23566654 444432221110 010000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcC-Ccchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSP-SAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~-~~~~~~~~~~ 234 (310)
.+ ......+...++. ..+.+++..+...++.+.+.+.|++. ++++. ++..+. +.+.++. .+.
T Consensus 269 -----~~-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~~~------- 332 (386)
T PRK09082 269 -----VN-TPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAALANS-RFKLL-PCEGTYFQLVDYSAISDL------- 332 (386)
T ss_pred -----CC-hHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCeeEEEEEeccccCCC-------
Confidence 00 0111111222211 34456667777788888899999874 77765 444443 4445542 110
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E----CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAV-L----GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~----~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
-..++.+.+.++.++.+.+.. + .+.+++|+++.+ ++++++..++.|++
T Consensus 333 --------------~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~---~~~~l~~~~~rl~~ 385 (386)
T PRK09082 333 --------------DDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK---QEETLDAAAERLCQ 385 (386)
T ss_pred --------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC---CHHHHHHHHHHHhh
Confidence 013566665444344444432 2 124789999663 58888888888764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=118.69 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=140.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.+++..+.+|++++++.+.+. +.++++++++|++|.+.+ +++|+++|++||+++++
T Consensus 134 ~~~~g~~---~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 134 TIFAGGE---PYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred HHHcCCE---EEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4456776 88999875434678999999988653 347777788999999988 57899999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|.++............. ........++..|..|.++.| | +|+++. ++..+....... ......
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlRiG~~i~-~~~l~~~~~~~~-~~~~~~---------- 271 (385)
T PRK09276 205 DAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMT-GWRIGFAVG-NADLIAGLGKVK-SNVDSG---------- 271 (385)
T ss_pred ecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCc-chhheeeeC-CHHHHHHHHHHH-hhccCC----------
Confidence 99997543321111110 011112345678899998654 4 677764 454433221111 011000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~ 234 (310)
........+..+++ .....+++..++..++.+.+.+.|++. ++++. ++..+. +.+.+++. .
T Consensus 272 -------~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~v~~~~~-~------- 333 (385)
T PRK09276 272 -------VFQAIQEAGIAALN-GPQEVVEELRKIYQERRDILVEGLRKL-GLEVE-PPKATFYVWAPVPKG-Y------- 333 (385)
T ss_pred -------CCHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEECCCC-C-------
Confidence 00011111222222 123456777778888889999999886 77765 344443 44444331 0
Q ss_pred hccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
+ ..++.+.+.+ .|.....+.... +.+++|+++. .+++++...++.|.+
T Consensus 334 -------~-------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~---~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 334 -------T-------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT---VPDERIEEAVERIKK 384 (385)
T ss_pred -------C-------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC---CCHHHHHHHHHHHhh
Confidence 0 1356666654 454433332222 2468999965 356677777666643
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-12 Score=119.19 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=148.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++. ++.+|+++|++++.+. +.++++.+++|++|.+.+ +++|+++|++||+++++
T Consensus 156 ~~~~g~~---~~~v~~~~~-~~~~~~~~l~~~~~~~------~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 156 LSMAGAK---IKTVTLRPP-DFAVPEDELKAAFTSK------TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred HHHcCCE---EEEEECCcc-cCCCCHHHHHHhcCcC------ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4456776 999999864 3689999999999664 347778889999999865 77899999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++....+..+ +... ..+...-.++..|..|.++.| .-+|+++. ++..+....... .+....
T Consensus 226 De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~-~~~l~~~l~~~~-~~~~~~----------- 291 (413)
T PLN00175 226 DEVYDKLAFEGD-HISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAH-SFLTFA----------- 291 (413)
T ss_pred ecccCccccCCc-ccChhhCCCCcCcEEEEecchhhccCcchheeeeEe-CHHHHHHHHHHH-hhccCC-----------
Confidence 999865543211 1111 111111235668999999855 34666654 443433221110 111000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~ 235 (310)
.+ .+....+..+++ .+...+++..++..+..+.+.+.|.+. ++.+. +|..+ .+.+.+.+.+.
T Consensus 292 -----~s-~~~Q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~~f~~~~~~~~~~-------- 354 (413)
T PLN00175 292 -----TA-TPMQWAAVAALR-APESYYEELKRDYSAKKDILVEGLKEV-GFKVY-PSSGTYFVMVDHTPFGF-------- 354 (413)
T ss_pred -----CC-HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEeccccCC--------
Confidence 00 011122222232 133456777888888999999999886 77765 44444 34444432110
Q ss_pred ccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEE-----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINA-SGKAYMTHAVL-----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~-----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+ ...++.+.+.+ .|....++... .+...+|+++. .++++++..++.|++.++
T Consensus 355 ------~------~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~---~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 355 ------E------NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC---KDEETLRAAVERMKTKLK 412 (413)
T ss_pred ------C------CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc---CCHHHHHHHHHHHHHHHh
Confidence 0 01356666654 46554444322 13468999966 368899999998887653
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-12 Score=117.44 Aligned_cols=242 Identities=13% Similarity=0.043 Sum_probs=135.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
..+|.. ++.+|+++++.+.+|++++++++++.+ .++++.+++|++|.+.+ +++|+++|++||+++++|
T Consensus 134 ~~~g~~---~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~D 204 (387)
T PRK08960 134 RLVEGA---AQLVPVGPDSRYQLTPALVERHWNADT------VGALVASPANPTGTLLSRDELAALSQALRARGGHLVVD 204 (387)
T ss_pred HhcCCe---EEEEecCcccCCCCCHHHHHHHhCccc------eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 445665 889999875567899999999887643 36778889999999887 556777899999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
.++.......+ ... ......--++..|.+|.++.| .-+|+++.. +..+.........+...
T Consensus 205 e~Y~~~~~~~~-~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~--------------- 266 (387)
T PRK08960 205 EIYHGLTYGVD-AAS-VLEVDDDAFVLNSFSKYFGMTGWRLGWLVAP-PAAVPELEKLAQNLYIS--------------- 266 (387)
T ss_pred ccccccccCCC-CCC-hhhccCCEEEEeecccccCCcccEEEEEEcC-HHHHHHHHHHHhhhccC---------------
Confidence 99864332111 111 111111124668999998744 227887764 33432221110000000
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc-eEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF-AVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
.+ .+....+..++.......+.+..+...+..+.+.+.|++. ++.+...|.. ..+.+.+.....
T Consensus 267 --~s-~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~~~----------- 331 (387)
T PRK08960 267 --AS-TPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAFGG----------- 331 (387)
T ss_pred --CC-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEeccccCC-----------
Confidence 00 0111112222221112345566667777788888898876 6654323443 333444432100
Q ss_pred cchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC---CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINA-SGKAYMTHAVLG---GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~---~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++.+.+.+ .|....++.... ...++|+++.. +.+.+...++.|++.
T Consensus 332 ---~-------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~---~~~~l~~al~~l~~~ 384 (387)
T PRK08960 332 ---D-------AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ---SLPRLQEAVERIARG 384 (387)
T ss_pred ---C-------HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC---CHHHHHHHHHHHHHH
Confidence 0 1355666554 554433332222 24689999663 455555555555443
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-11 Score=114.55 Aligned_cols=253 Identities=13% Similarity=0.105 Sum_probs=150.1
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a 82 (310)
.|+. ++.|++++.+++.+|++++++++.+..+.+.++.+++++.++|++|.+.+ +++|.++|++||+++++|.+
T Consensus 165 ~g~~---vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEi 241 (447)
T PLN02607 165 TGVK---IVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEI 241 (447)
T ss_pred CCcE---EEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecc
Confidence 4555 88888876555679999999999886665656678888999999999877 77899999999999999999
Q ss_pred cccccccCh---hhhhhhcCCC--C-CC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 83 YAGSACICP---EFRHFIDGVE--G-AD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~--~-~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
++...+..+ .......... + .+ .+..+..|.|+.| .-+|+++..++... ..+.....|...
T Consensus 242 Ya~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~-~~~~~~~~~~~~--------- 311 (447)
T PLN02607 242 YSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV-TTARRMSSFTLV--------- 311 (447)
T ss_pred ccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHH-HHHHHHhhcCCC---------
Confidence 875433211 1111111110 0 11 3557999998744 55787776555432 222111111100
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcch
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGV-----ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVM 228 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~ 228 (310)
......++...+.. .-+....++..+..+.+.+.|++. +++...+.....+.+.+....
T Consensus 312 -------------s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~fvw~~L~~~~-- 375 (447)
T PLN02607 312 -------------SSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGNAGLFCWMNLSPLL-- 375 (447)
T ss_pred -------------CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCeeEEEEEEchHhh--
Confidence 00111111222222 123445566667777888888875 776553323444555553210
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHA-VLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
. .. . .....++.+++.++.++.+.|+ ... ..+++|+++++ .++++++..++.|.+.+.+
T Consensus 376 ---~--------~~--~-~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~--~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 376 ---E--------TP--T-REGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN--MSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred ---c--------CC--C-chhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0111355666655433444443 332 36899999774 4688999999999888854
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-12 Score=116.43 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=140.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH------h
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ------F 73 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~------~ 73 (310)
++..|+. ++++|++++ ++.+|+++|++++++. +.++++++.+|++|.+.| +++|+++|++ |
T Consensus 137 ~~~~g~~---v~~v~~~~~-~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~ 206 (394)
T PRK06836 137 VDNHGGK---LVVVPTDTD-TFQPDLDALEAAITPK------TKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGR 206 (394)
T ss_pred HHHcCCE---EEEEecCCc-cCcCCHHHHHhhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCC
Confidence 3456776 999999875 3679999999999664 347788889999999877 6677888999 8
Q ss_pred CcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchh----HHhhhccCCccccccccc
Q 046506 74 GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSD----LVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 74 g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~----~~~~~~~~~~y~~~~~~~ 148 (310)
|+++++|.++................. .-..+..|..|.++.| ..+|+++..+... +...+..........
T Consensus 207 ~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 282 (394)
T PRK06836 207 PIYLISDEPYREIVYDGAEVPYIFKYY-DNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFV--- 282 (394)
T ss_pred CeEEEEeccccccccCCCCCCChHHcc-CcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccc---
Confidence 999999999864432111111111111 1346778999998855 4578877654311 001100000000000
Q ss_pred cccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcc
Q 046506 149 SKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAV 227 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~ 227 (310)
....+...+....+.. .. ..++..+..+.+.+.|+++ |+++. ++..+ .++..++..+
T Consensus 283 ----------------~~~~~~q~~~~~~l~~-~~--~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~- 340 (394)
T PRK06836 283 ----------------NAPALMQRVVAKCLDA-TV--DVSIYKRNRDLLYDGLTEL-GFECV-KPQGAFYLFPKSPEED- 340 (394)
T ss_pred ----------------cCCHHHHHHHHHHhCC-hH--HHHHHHHHHHHHHHHHHhC-CCEee-cCCceEEEEEeCCCCC-
Confidence 0011111122222221 11 1334445667778888776 77765 34434 3333332211
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.+.+.|.....+..+...+++|++++ .++++++..++.|++++++.
T Consensus 341 ----------------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~~~i~~l~~~l~~~ 392 (394)
T PRK06836 341 ----------------------DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC---VDTETIERSLPAFEKLAKEY 392 (394)
T ss_pred ----------------------HHHHHHHHHhCCEEEECchhcCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 13455666666654444333334578999965 36899999999999887653
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=116.92 Aligned_cols=233 Identities=13% Similarity=0.060 Sum_probs=145.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHH-HHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKIN-SDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~-~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
++..|+. ++.+|.++ ++.+|+++|++++. +. +.+++++.++|++|.+.|.+++.++++.. +++++|.
T Consensus 144 ~~~~g~~---~~~v~~~~--~~~~d~~~l~~~~~~~~------~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~De 211 (380)
T PLN03026 144 AAVNGAE---VIKVPRTP--DFSLDVPRIVEAVETHK------PKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDE 211 (380)
T ss_pred HHHcCCE---EEEeecCC--CCCcCHHHHHHHHhccC------CcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEEC
Confidence 3456776 88898864 36899999999983 33 44788888999999999999999999865 9999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
++.-+..... ....... ..-.++..|+.|.++.| ..+|+++. ++..+........+|.
T Consensus 212 aY~~~~~~~~-~~~~~~~-~~~viv~~SfSK~~glaGlRiGy~~~-~~~~i~~l~~~~~~~~------------------ 270 (380)
T PLN03026 212 AYIEFSTQES-RMKWVKK-YDNLIVLRTFSKRAGLAGLRVGYGAF-PLSIIEYLWRAKQPYN------------------ 270 (380)
T ss_pred cchhhcCCcc-hHHHHHh-CCCEEEEecchHhhcCccccceeeec-CHHHHHHHHHhcCCCC------------------
Confidence 9854322111 1111111 11246778999998744 34566654 4444433221111110
Q ss_pred ccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
...+...++...+ ..+.+++..++..+..+++.+.|++++++.+ .++.++.+.+.+.+..
T Consensus 271 -----~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~------------- 331 (380)
T PLN03026 271 -----VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGR------------- 331 (380)
T ss_pred -----CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCC-------------
Confidence 0112222222223 2244567777778888889999988865655 3566777777655310
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++.+.|.+.|............+++|+|+. +++++++++++|+++
T Consensus 332 --~-------~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~----~~~~~~~l~~al~~~ 379 (380)
T PLN03026 332 --D-------AKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG----KPEHTDALMEALKQL 379 (380)
T ss_pred --C-------HHHHHHHHHHCCeEEEECCCCCCCCEEEEecC----CHHHHHHHHHHHHHh
Confidence 0 13566777777754332222233568999954 577999999999764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-12 Score=116.34 Aligned_cols=241 Identities=10% Similarity=0.010 Sum_probs=140.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh---HHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL---KPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl---~~I~~l~~~~g~~l~v 79 (310)
++.+|+. ++.+|+++++.+.+|++++++.+.+. +.++++..++|++|.+.+. ++|+++|++||+++++
T Consensus 135 ~~~~g~~---~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~ 205 (389)
T PRK08068 135 VALARAQ---FETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVH 205 (389)
T ss_pred HHhcCCE---EEEeecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 4567777 99999986434678999999998653 3467777788999999885 5788899999999999
Q ss_pred ecccccccccChhhhhhhcCC--CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~--~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++................ ..-.++..|..|.++.| .-+|+++ .++..+.........+.....
T Consensus 206 Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~-~~~~l~~~l~~~~~~~~~~~~---------- 274 (389)
T PRK08068 206 DFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAV-GNESVIEAINLLQDHLFVSLF---------- 274 (389)
T ss_pred ehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEe-cCHHHHHHHHHHHhhccCCCC----------
Confidence 999864332110000111111 11236778999999654 3367765 455443322111111110000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~~ 235 (310)
......+..++. -+.+.++...++..+..+.+.+.|.+. ++.+. ++..+. +.+.+.+..
T Consensus 275 --------~~~q~~~~~~l~-~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-~~~g~~~~~v~~~~~~--------- 334 (389)
T PRK08068 275 --------GAIQDAAIEALL-SDQSCVAELVARYESRRNAFISACREI-GWEVD-APKGSFFAWMPVPKGY--------- 334 (389)
T ss_pred --------hHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCCCC---------
Confidence 001111112221 133556777888888888999999886 77654 445544 445554310
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
-..++.+.+.++.++.+.+.. . .+.+++|+++. ++++.+...++.|++
T Consensus 335 -------------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~al~~l~~ 385 (389)
T PRK08068 335 -------------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL---TDEERLREAVERIGK 385 (389)
T ss_pred -------------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc---CCHHHHHHHHHHHHH
Confidence 014567777654334444432 2 23579999975 345556555555543
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-12 Score=117.72 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=140.4
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHh-CcEEEeecccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQF-GIWVHVDAAYAGSAC 88 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~-g~~l~vD~a~~~~~~ 88 (310)
++.+++++++++.+|+++|++++.+. +.++++++.+|.+|.+.+ +++|+++|++| |+++++|.+++...+
T Consensus 141 ~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~ 214 (402)
T PRK06107 141 PVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRF 214 (402)
T ss_pred EEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhcccccc
Confidence 66777764334679999999988653 447778888999998876 56778889998 999999999864322
Q ss_pred cC---hhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 89 IC---PEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 89 ~~---~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.. +.......+...--++..|.+|.++.| .-+|+++. ++..+. .+.....+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~-~~~~~~-~~~~~~~~~~~~------------------- 273 (402)
T PRK06107 215 DDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG-PADLIA-AINKLQSQSSSC------------------- 273 (402)
T ss_pred CCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec-CHHHHH-HHHHHHHhcccC-------------------
Confidence 11 111111111111224456779999755 33577654 444432 221100111000
Q ss_pred CcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE-EEEEEcCCcchhhhhhhhccccch
Q 046506 165 RFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV-VCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 165 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
...+...++...+ +...+++..++..++.+.+.+.|.+++++.+. +|..+. +.+++... .++ ..-++...
T Consensus 274 -~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~--~~~---~~~~~~~~ 346 (402)
T PRK06107 274 -PSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGL--IGK---TTPEGKVL 346 (402)
T ss_pred -CChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccc--ccc---ccccccCC
Confidence 1112222223333 33456677777788888899999887787765 444443 33333210 000 00000000
Q ss_pred hHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
....++...+. +.|.....+...+..+++|+++.. ++|+++..++.|++.+.++
T Consensus 347 ------~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~---~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 347 ------ETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT---SLETLEEACARIERAVAAL 401 (402)
T ss_pred ------CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence 00124444444 456544444444445799999763 5889999999998877654
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=118.39 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=143.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
....|.. +++++++++ ++.||+++++++|++.++ .|+++|. .|...++++|.++|+++|++|+-|+|
T Consensus 82 i~~~G~~---pv~~Di~~~-~~~id~~~~~~~i~~~t~------ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a 148 (363)
T PF01041_consen 82 ILWAGAE---PVFVDIDPE-TLNIDPEALEKAITPKTK------AILVVHL---FGNPADMDAIRAIARKHGIPLIEDAA 148 (363)
T ss_dssp HHHTT-E---EEEE-BETT-TSSB-HHHHHHHHHTTEE------EEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-T
T ss_pred HHHhccE---EEEEeccCC-cCCcCHHHHHHHhccCcc------EEEEecC---CCCcccHHHHHHHHHHcCCcEEEccc
Confidence 3456776 999999985 689999999999998753 5665554 67778999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeee--cccccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLN--AHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+.|...... ..+- ..|+-++| ..|.+.+. ..|++++++++...+..... .+..... ...+.
T Consensus 149 ~a~g~~~~g~----~~G~-~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~ 213 (363)
T PF01041_consen 149 QAFGARYKGR----PVGS-FGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDA---------FRRYR 213 (363)
T ss_dssp TTTT-EETTE----ETTS-SSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSE---------CSTTE
T ss_pred cccCceeCCE----eccC-CCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccc---------ccccc
Confidence 9877643221 1121 23555555 55888433 45777788776543332111 0000000 00001
Q ss_pred ec--cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-C-----ceEEEEEEcCCcchhhh
Q 046506 160 IT--LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-H-----FAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 160 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~-----~~~v~~~~~~~~~~~~~ 231 (310)
.+ .|..++.-.+.+++.......++++.++..++++.+.+.|.+++++.....+ . ...+.+.+.+...
T Consensus 214 ~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~---- 289 (363)
T PF01041_consen 214 HELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL---- 289 (363)
T ss_dssp ESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----
T ss_pred ccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----
Confidence 11 1222333333444444445678889999999999999999999998776432 2 1234455554210
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe---------------EEC---------CEeEEEEEccCCCCCH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYMTHA---------------VLG---------GIYAIRFAAGATLTEE 287 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---------------~~~---------~~~~iRis~~~~~~t~ 287 (310)
....++.+.|.++|....... ... ....|-+- .++..++
T Consensus 290 ----------------~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP-~~~~lt~ 352 (363)
T PF01041_consen 290 ----------------ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLP-IHPRLTE 352 (363)
T ss_dssp ----------------STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEE-HSTTSCH
T ss_pred ----------------chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECc-CCCCCCH
Confidence 012467778888875322211 000 02466666 4578999
Q ss_pred HHHHHHHHHHH
Q 046506 288 RHVMVAWTVVQ 298 (310)
Q Consensus 288 edi~~li~~l~ 298 (310)
+|+++++++|+
T Consensus 353 edv~~I~~~ir 363 (363)
T PF01041_consen 353 EDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccC
Confidence 99999999885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-12 Score=117.61 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=121.3
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
.+|+. ++++.. .+|+++++++|+++| .+|++.+.+|+++.+.|+++|+++|+++|+++++|.+++
T Consensus 123 ~~Gi~---v~~vd~------~~d~~~l~~~I~~~T------k~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 123 KLGID---VTFFNP------NLTADEIVALANDKT------KLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred HCCCE---EEEECC------CCCHHHHHHhCCcCC------eEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 34665 666632 478999999998864 377788899999999999999999999999999999986
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCch--hHH----hhhccCCccccccccccccccC---
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPS--DLV----NSLSTNPEYLKNKATESKQVVD--- 154 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~--~~~----~~~~~~~~y~~~~~~~~~~~~~--- 154 (310)
.+.+.-+. . .++|+++.|.+|++++. .+.|.+.+.... +.. ......+.+.........+...
T Consensus 188 tP~~~~pl-~------~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (432)
T PRK06702 188 TPYLCQAF-E------HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIV 260 (432)
T ss_pred chhhCChh-h------cCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHH
Confidence 44332221 1 26999999999999985 333444442221 100 0000011110000000000000
Q ss_pred --CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC------------------C
Q 046506 155 --YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR------------------H 214 (310)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------------------~ 214 (310)
........+........|.+++ |...++.++++..+++..+.+.|++.|.+..+.-| .
T Consensus 261 ~~~~~~~~~~g~~~sp~~a~l~~r--gL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~ 338 (432)
T PRK06702 261 KARVQLLRDYGNCMSPFNAYISNI--GLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGA 338 (432)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCC
Confidence 0000011122334455555544 55788999999999999999999999988654321 1
Q ss_pred ceEEEEEEcC
Q 046506 215 FAVVCFRVSP 224 (310)
Q Consensus 215 ~~~v~~~~~~ 224 (310)
.++++|.+.+
T Consensus 339 gg~~sf~l~~ 348 (432)
T PRK06702 339 SGVLTFGIKG 348 (432)
T ss_pred ceEEEEEecC
Confidence 3688898864
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=115.33 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEec-cCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATI-GTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
++++|++.|.+... ....|++.- .....|.+.| +++|.++|++||+++++|++|.+.............++
T Consensus 185 ~~~~l~~~l~~~~~---~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v- 260 (423)
T PRK05964 185 TLDALEALLEKHAG---EIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGV- 260 (423)
T ss_pred HHHHHHHHHHhCCC---cEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCC-
Confidence 37888888864321 233455544 3455566554 99999999999999999999965433221111011223
Q ss_pred CCCeeeeecccccccc-cceEEEEEeCchhHHhhhccC---CccccccccccccccCCCCceeccCCCcchHHHHHHHHH
Q 046506 102 GADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTN---PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRN 177 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (310)
..|++++ .|+++++ ...|+++.+ ++.. +.+... ..++... ++ ++.+....++.++++.
T Consensus 261 ~pDi~~~--~K~l~gG~~p~~av~~~-~~i~-~~~~~~~~~~~~~~~~-------------T~-~~np~~~aaa~a~l~~ 322 (423)
T PRK05964 261 SPDIMCL--SKGLTGGYLPLAATLCT-AEIF-EAFYSDDRAKAFMHSP-------------SY-TANPLACAAANASLDL 322 (423)
T ss_pred CCCeeee--ehhhhcCcccceEEEEc-HHHH-HhhhcCCcccccccCC-------------CC-CcCHHHHHHHHHHHHH
Confidence 3787766 4999776 467776654 4333 332110 0001000 00 1112223334444544
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 178 YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 178 ~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
+.. +.+.++..++.+++++.|+++.++..+.. ....++.+.+.... . ......+.+
T Consensus 323 l~~---~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~---------------~----~~~~~~l~~ 380 (423)
T PRK05964 323 FED---EPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPV---------------L----ERDGPALRA 380 (423)
T ss_pred HHh---cCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCc---------------c----hhHHHHHHH
Confidence 422 34667777888888888876533322221 23445566665421 0 122356777
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.|.++|.+ +.+. ...+|++++ ..+|++|||.+++++++.+.+
T Consensus 381 ~l~~~Gv~-v~~~----~~~lR~~p~-l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 381 FALERGVL-LRPL----GNTIYLMPP-YIITAEELDRITDAIVEVADE 422 (423)
T ss_pred HHHHCCeE-EEec----CCEEEEeCC-cccCHHHHHHHHHHHHHHHhh
Confidence 88888854 4332 257999955 689999999999999988765
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-12 Score=116.02 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=145.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.++ .+.+|+++|++++.+.. +.++++++.+|++|.+.+.+++.++++..++++++|++
T Consensus 122 ~~~~g~~---~~~i~~~~--~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~ 191 (356)
T PRK04870 122 AKLAGLE---FVGVPLTA--DFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEA 191 (356)
T ss_pred HHHcCCE---EEEecCCC--CCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
Confidence 4567776 99999985 35899999999996431 34777778899999999988888888777899999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+..... ........... --.+..|.+| ++.| .-+|+++. ++..+++.......+ .
T Consensus 192 y~~~~~--~~~~~~~~~~~-~vi~~~S~SK-~~~~GlRiG~~i~-~~~~i~~~~~~~~~~----~--------------- 247 (356)
T PRK04870 192 YQPFAG--DSWLPRLARFP-NLLVMRTVSK-LGLAGLRLGYLAG-HPAWIAELDKVRPPY----N--------------- 247 (356)
T ss_pred chhhcC--cchHHHHhhCC-CEEEEecchh-hhhHHHhhhhhhC-CHHHHHHHHHccCCC----c---------------
Confidence 864321 11111111111 2357789999 4443 23777754 444443322111111 0
Q ss_pred cCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 162 LSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
...+...++...+ ..+.+++..++..++.+.+.+.|++++++.+. ++..+.+.+.+.+.
T Consensus 248 ----~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~--------------- 307 (356)
T PRK04870 248 ----VNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVPDA--------------- 307 (356)
T ss_pred ----CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECCCH---------------
Confidence 0111122222222 22346777788888999999999988888764 55666666655421
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.++.+.+.+.|.......... ..+++|+|+. +.+++++|+++|+++
T Consensus 308 ----------~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~ 355 (356)
T PRK04870 308 ----------AAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG----TPEENAQFLAALKAA 355 (356)
T ss_pred ----------HHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHh
Confidence 346666767775443332222 3579999954 578999999999875
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=119.22 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=110.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++.+ |+++++++|+++ +.+|++.+.+|++|.+.|+++|+++|+++|++++||++++
T Consensus 119 ~~G~~---v~~v~~~-------d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~ 182 (418)
T TIGR01326 119 RLGIE---VRFVDPD-------DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFA 182 (418)
T ss_pred HcCcE---EEEECCC-------CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 35555 6666642 689999999764 3477888889999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeCchhHHhhhccCCccccccccccccc-cCC-------
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV-VDY------- 155 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~------- 155 (310)
.+....+. . .++|+++.|++|+++++.. .|++++..+... ...... ..+.......... ...
T Consensus 183 ~~~~~~~l------~-~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~-~~~~~~-~~~~~~~~~q~a~~~~~~~~~~~~ 253 (418)
T TIGR01326 183 TPYLCRPI------D-HGADIVVHSATKYIGGHGTAIGGVIVDGGKFD-WANGRF-PLFTTPDPSYHGLVFTETFGNPAF 253 (418)
T ss_pred hhhcCCch------h-cCCeEEEECccccccCCccceEEEEEeccccc-cccccc-ccccCCCCccccchhhhhhchhhH
Confidence 65322111 1 2589999999999987532 666666543211 110000 0000000000000 000
Q ss_pred ----C-CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 156 ----K-DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 156 ----~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
+ ......|-.......|..+ .+...+..++++..+++..+.+.|.+.|++..+
T Consensus 254 ~~~~~~~~~~~~G~~~~p~~a~~~~--~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V 311 (418)
T TIGR01326 254 IVKARVQLLRDLGAALSPFNAFLLL--QGLETLSLRMERHVENALKVAEFLEAHPKVAWV 311 (418)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH--CCcccHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 0 0000011112233444433 355678888888889999999999999998654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-12 Score=115.11 Aligned_cols=256 Identities=9% Similarity=0.085 Sum_probs=142.5
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. +++++++++ ++.+|++++++++++. +.+|+.+ +.+|...|+++|.++|++||+++++|++|
T Consensus 89 ~~~G~~---~v~vd~d~~-~~~~d~~~le~~i~~~------tk~Iip~---~~~G~~~d~~~I~~la~~~~i~vIeDaa~ 155 (376)
T TIGR02379 89 VLRGAK---IVFVDIRPD-TMNIDETLIESAITHR------TKAIVPV---HYAGVACDMDTIMALANKHQLFVIEDAAQ 155 (376)
T ss_pred HHcCCE---EEEEecCCC-cCCCCHHHHHHhcCcC------ceEEEEe---CCCCCccCHHHHHHHHHHCCCEEEEECcc
Confidence 455776 999999975 4789999999999764 3355543 45799999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccc-cCCCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV-VDYKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~ 162 (310)
+.+...... . ...+.++.++++...|.+......|++++++++...+..... .+-.......... ..+ .+ ...
T Consensus 156 ~~g~~~~~~-~--~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~-~~-~~~ 229 (376)
T TIGR02379 156 GVMSTYKGR-A--LGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIR-EKGTNRSQFFRGEVDKY-TW-RDI 229 (376)
T ss_pred ccCCccCCc-c--cCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHH-HhCCCCccccccCCCcc-ee-eee
Confidence 876532111 0 111222344444444555432235677777675543332111 0000000000000 000 00 112
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC--C-eEEec-CCC--c--eEEEEEEcCCcchhhhhhh
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK--R-FEVVF-PRH--F--AVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~--~-~~v~~-~~~--~--~~v~~~~~~~~~~~~~~~~ 234 (310)
|.++..-.+.+++.......++++.++..+++++..+.|.+++ + +.+.. ++. . ..+.+.+.+..
T Consensus 230 g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------- 301 (376)
T TIGR02379 230 GSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDED-------- 301 (376)
T ss_pred cccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcC--------
Confidence 2333332333333333346788888888899999999988764 2 23221 111 1 12333332210
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEE---Ee-------EE---C---------CEeEEEEEccCCCCCHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMT---HA-------VL---G---------GIYAIRFAAGATLTEERHVMV 292 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~-------~~---~---------~~~~iRis~~~~~~t~edi~~ 292 (310)
-..++.+.|.++|+.... +. .+ . ....+.+- .++..+++|+++
T Consensus 302 --------------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP-~~~~l~~~~~~~ 366 (376)
T TIGR02379 302 --------------DRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLP-LYYGLSKEDQAR 366 (376)
T ss_pred --------------CHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEcc-CCCCCCHHHHHH
Confidence 013666777777653211 10 00 0 03356665 457899999999
Q ss_pred HHHHHHHHH
Q 046506 293 AWTVVQEHL 301 (310)
Q Consensus 293 li~~l~~~~ 301 (310)
++++|++..
T Consensus 367 i~~~i~~~~ 375 (376)
T TIGR02379 367 VIQTICDYL 375 (376)
T ss_pred HHHHHHHHh
Confidence 999998754
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-12 Score=115.25 Aligned_cols=254 Identities=10% Similarity=0.073 Sum_probs=142.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. +++++++++ .+.+|+++|+++|++. +.+|+.++ .+|...++++|.++|++||+++++|+|
T Consensus 88 ~~~~G~~---~v~~d~d~~-~~~~d~~~le~~i~~~------tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a 154 (375)
T PRK11706 88 FVLRGAK---IVFVDIRPD-TMNIDETLIEAAITPK------TRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAA 154 (375)
T ss_pred HHHcCCE---EEEEecCCC-cCCcCHHHHHHhcCCC------CeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECc
Confidence 3456776 899999875 4689999999999764 33555543 479889999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecc--cccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+.+..... +. ... ..|+-++|+| |.+.. ...|+++++++....+..... ........ ..+......+
T Consensus 155 ~a~g~~~~~--~~-~g~--~~~~~~~Sf~~~K~l~~-g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~- 225 (375)
T PRK11706 155 QGVMSTYKG--RA-LGT--IGHIGCFSFHETKNYTA-GEGGALLINDPALIERAEIIREKGTNRSQF--FRGQVDKYTW- 225 (375)
T ss_pred cccccccCC--ee-eec--CcCEEEEeCCCCccccc-cCCeEEEECCHHHHHHHHHHHHcCCCcchh--hccCCCccee-
Confidence 987753211 11 111 2455566666 98865 334556666665433221110 00000000 0000000000
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC---eEEecCC-C----ceEEEEEEcCCcchhhh
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR---FEVVFPR-H----FAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~---~~v~~~~-~----~~~v~~~~~~~~~~~~~ 231 (310)
...+..+..-.+.+++.......+++..++..++++++.+.|.++++ +.+...+ . ...+.+.+.+.
T Consensus 226 ~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 299 (375)
T PRK11706 226 VDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL------ 299 (375)
T ss_pred eecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc------
Confidence 11122222222333333333456788888888999999999988762 4432112 1 12333333321
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE---EeE-------E----C--------CEeEEEEEccCCCCCHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYMT---HAV-------L----G--------GIYAIRFAAGATLTEERH 289 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~-------~----~--------~~~~iRis~~~~~~t~ed 289 (310)
....++.+.|.++|+.... +.. + . ....+-+- .++..+++|
T Consensus 300 ----------------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP-~~~~l~~~~ 362 (375)
T PRK11706 300 ----------------EDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLP-LFYNLTDVE 362 (375)
T ss_pred ----------------CCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEecc-CCCCCCHHH
Confidence 0113566677777653111 100 0 0 12345554 456788999
Q ss_pred HHHHHHHHHHHH
Q 046506 290 VMVAWTVVQEHL 301 (310)
Q Consensus 290 i~~li~~l~~~~ 301 (310)
+++++++|++..
T Consensus 363 ~~~i~~~i~~~~ 374 (375)
T PRK11706 363 QRTVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=114.23 Aligned_cols=235 Identities=14% Similarity=0.066 Sum_probs=143.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~vD 80 (310)
++..|+. ++.+|.+++ +.+|++++++++++.+ .++++++.+|++|.+.|.+++.++++. .++++++|
T Consensus 129 ~~~~g~~---~~~v~~~~~--~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~D 197 (371)
T PRK05166 129 PTMMGAR---VERVTVTPD--LGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVD 197 (371)
T ss_pred HHHcCCe---EEEeecCCC--CCCCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 4556776 999999864 4899999999987643 477889999999999998777766654 48899999
Q ss_pred cccccccccChhhh--hhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFR--HFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~--~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
+++.......+... ........--++..|..|.++.| .-+|++++.++............+ .
T Consensus 198 e~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~-~-------------- 262 (371)
T PRK05166 198 EAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPF-N-------------- 262 (371)
T ss_pred CcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCC-C--------------
Confidence 99864442111000 00111101125678999998744 456777766664432221111000 0
Q ss_pred ceeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
...+...+++..+ ..+.+++..+...+..+.+.+.|++. ++.+. ++..+.+.+.....
T Consensus 263 --------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~~----------- 321 (371)
T PRK05166 263 --------VNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDARRP----------- 321 (371)
T ss_pred --------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCCC-----------
Confidence 0111112222222 23456777777778888899999886 77653 55565554443211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.+.++|............+++|+++. ++++.++++++|+.+.
T Consensus 322 -------------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~----~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 322 -------------ASAVAEALLRQGVIVKPWKQPGFETFIRVSIG----SPEENDHFVAALDKVL 369 (371)
T ss_pred -------------HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 13567777777654333222233678999955 4777899999988764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-11 Score=110.22 Aligned_cols=222 Identities=9% Similarity=0.019 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++.. .....|++....+++|.+.| +++|.++|++||+++++|++|.+.............++ .
T Consensus 172 d~~~le~~l~~~~---~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~-~ 247 (401)
T TIGR01885 172 NLEALEEALEDHG---PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV-K 247 (401)
T ss_pred CHHHHHHHHHhcC---CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCC-C
Confidence 6899999996531 12346667667778899887 99999999999999999999854322221111001222 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|+++++ |.+++. ..+|++.. +++.. +.+.. .+.. .++ ++.+.....+.++++.+..+
T Consensus 248 ~di~~~g--K~l~~g~~~ig~v~~-~~~i~-~~~~~--~~~~--------------~t~-~~~p~~~~aa~a~L~~i~~~ 306 (401)
T TIGR01885 248 PDIVLLG--KALSGGVYPVSAVLA-DDDVM-LTIKP--GEHG--------------STY-GGNPLACAVAVAALEVLEEE 306 (401)
T ss_pred CCEEEee--ccccCCCCCcEEEEE-cHHHH-hhccC--CCCC--------------CCC-CCCHHHHHHHHHHHHHHHhc
Confidence 6887765 988753 23455554 44443 32211 0100 011 11233344455566655333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
.+.++..++++++++.|++++ ..++. .....+..+.+.... . .....++.+.|.+
T Consensus 307 ---~l~~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~---------------~----~~~~~~l~~~l~~ 363 (401)
T TIGR01885 307 ---KLAENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESK---------------T----GRTAWDLCLKLKE 363 (401)
T ss_pred ---cHHHHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCc---------------c----hhHHHHHHHHHHh
Confidence 344677778999999998873 22322 123444444443321 0 0123567788888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+|. ++.+. +...+||+++ ...+++||+.++++|++.+
T Consensus 364 ~Gv-~v~~~---~~~~lRi~p~-l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 364 KGL-LAKPT---HGNIIRLAPP-LVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred CCE-EEEec---CCCEEEEeCC-ccCCHHHHHHHHHHHHHHh
Confidence 874 44432 3568999955 6799999999999998754
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-12 Score=115.59 Aligned_cols=242 Identities=12% Similarity=0.013 Sum_probs=139.2
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+.+|.. ++.+|.++.+++.+|+++|++.+.+. +.++++.+++|++|.+.+ +++|+++|+++|+++++|
T Consensus 132 ~~~g~~---~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 132 AAAEGR---PVLVPSGPAERFQLTAADVEAAWGER------TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred HHcCCE---EEEeecCCccCCcCCHHHHHhhcCcc------ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345655 88999986445789999999998754 347778889999999876 688899999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCee-eeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSF-SLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~-~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
.++........ ... .... ..+++ ..|.+|.++.| .-+|+++.. +..+....... .+....
T Consensus 203 e~y~~~~~~~~-~~~-~~~~-~~~vi~~~S~SK~~~~~G~RiG~~~~~-~~l~~~l~~~~-~~~~~~------------- 264 (388)
T PRK07337 203 EIYQGLSYDAA-PVS-ALSL-GDDVITINSFSKYFNMTGWRLGWLVVP-EALVGTFEKLA-QNLFIC------------- 264 (388)
T ss_pred ccccccccCCC-CcC-hhhc-cCCEEEEEechhhcCCchhheeeeecC-HHHHHHHHHHH-HHhccC-------------
Confidence 99864332111 111 1111 23454 46899998755 237777764 33332221111 001000
Q ss_pred eeccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~ 234 (310)
.......++...+. ...+.+..++..+..+.+.+.|+++ ++.+...| ....+.+.+.....
T Consensus 265 -------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~------- 329 (388)
T PRK07337 265 -------ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAH------- 329 (388)
T ss_pred -------CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccC-------
Confidence 01111222222221 2345666777777888888999875 66543233 44555555543100
Q ss_pred hccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC---CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG---GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~---~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+.. .-..++...+. +.|.....+.... +.+++|+++.. +++++...++.|.++
T Consensus 330 -----~~~-----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~---~~~~l~~~l~rl~~~ 386 (388)
T PRK07337 330 -----PAA-----GDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT---SMSRLEEAVARLGKL 386 (388)
T ss_pred -----CCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC---CHHHHHHHHHHHHHH
Confidence 000 00134555544 4554433333222 25799999763 477777777777654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=113.03 Aligned_cols=239 Identities=12% Similarity=0.063 Sum_probs=144.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeec
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~ 81 (310)
...|.. ++.+|.+.+ .+|++++++.+.... +.+++++.++|++|.+.|.+++.++++.. |+++++|.
T Consensus 126 ~~~g~~---~~~vp~~~~---~~~~~~l~~~~~~~~-----~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE 194 (369)
T PRK08153 126 AGFGGR---LVTVPYRDD---REDLDALLDAARREN-----APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDE 194 (369)
T ss_pred HHcCCe---EEEeeCCCC---CCCHHHHHHHhcccC-----CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeC
Confidence 345665 888998653 588898887765321 34676778899999999988877777654 89999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+++...... .... ......--++..|+.|.++.| .-+|+++. +++.++........+ .
T Consensus 195 ~y~~~~~~~-~~~~-~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~-~~~~~~~l~~~~~~~-~----------------- 253 (369)
T PRK08153 195 AYCETAPAG-AAPP-IDTDDPNVIRMRTFSKAYGLAGARVGYAIG-APGTIKAFDKVRNHF-G----------------- 253 (369)
T ss_pred chhhhcCcc-cchh-hhhcCCCEEEEecchHhccCcchheeeeec-CHHHHHHHHHhhcCC-C-----------------
Confidence 986443211 1111 111111125678999999755 23466654 444432221111111 0
Q ss_pred ccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
.......++...+. .+.+++..+...++.+++.+.|++. ++.+. ++.++.+.+.+...
T Consensus 254 -----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~-------------- 312 (369)
T PRK08153 254 -----MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRD-------------- 312 (369)
T ss_pred -----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCC--------------
Confidence 01222233333332 3456677777888888888888875 66644 45566555544321
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
......+.+.|.+.|.....+....+.+++|+++. +++|+++++++|+++...+++
T Consensus 313 -------~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~----~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 313 -------GAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG----PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred -------cccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHHHHHhhc
Confidence 11234677778788754433433223569999944 589999999999999876654
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-11 Score=113.66 Aligned_cols=244 Identities=13% Similarity=0.101 Sum_probs=145.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..+|.. +++++.+++ ++.+|++++++.+.+. +.++++..++|.+|.+.+ +++|+++|+++|+++++
T Consensus 130 ~~~~g~~---~~~~~~~~~-~~~~~~~~l~~~~~~~------~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 130 IRLCGAK---PVFIDTRST-GFRLTAEALENAITEK------TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred HHHcCCE---EEEeecCcc-cCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 3456776 889998865 4678999999988654 347788889999999865 88899999999999999
Q ss_pred ecccccccccChhhhhhhc--CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|++++......+ ...... +...-.++..|..|.++.| .-+|+++. ++..+...... ..+....
T Consensus 200 De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~-~~~l~~~~~~~-~~~~~~~----------- 265 (387)
T PRK07683 200 DEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFA-PSYLAKHILKV-HQYNVTC----------- 265 (387)
T ss_pred ecccccceeCCC-cCChhhccCCcCCeEEEeeccccccCccceeEEEEc-CHHHHHHHHHH-HHhccCC-----------
Confidence 999975543211 111111 1111246779999999865 33666654 44333332111 1111100
Q ss_pred CceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCC-cchhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPS-AVMDKLKT 233 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~-~~~~~~~~ 233 (310)
...+...++...+ +...+++..++..+..+.+.+.|.+. ++.+. ++..+.+.+...+. ..
T Consensus 266 ---------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~------ 328 (387)
T PRK07683 266 ---------ASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-GLDVE-KPTGAFYLFPSIGHFTM------ 328 (387)
T ss_pred ---------CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCeeEEEEEecccCCC------
Confidence 0111111222222 33456666777778888888888875 66654 44555443432221 10
Q ss_pred hhccccchhHHHHHHHHHHHHHHH-HhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 234 KYENSLLSEEERINEFNRELLESI-NASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++...+ .+.|....++.... +.+.+|+++. . +++++...++.|.+++...+
T Consensus 329 --------~-------~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~-~--~~~~~~~al~~l~~~l~~~~ 385 (387)
T PRK07683 329 --------S-------SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA-Y--SIETLKEGLDRLEAFLQQKA 385 (387)
T ss_pred --------C-------HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec-C--CHHHHHHHHHHHHHHHHhhc
Confidence 0 12344443 44554433333222 3579999966 2 58889999998888776543
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=115.00 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=119.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+.+|+. +.+++.+ +.+.++++|++++ .+|.+++++|+++.+.||++|+++||++|++++||+++
T Consensus 125 ~~~Gi~---v~~vd~~-------~~e~l~~al~~~T------klV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 125 KRLGVE---VEYYDPE-------IGAGIAKLMRPNT------KVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HhcCeE---EEEeCCC-------CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 445665 7777542 2377899987754 48999999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+...-+. . .++|++..|..|++++..+ .|++ +.++....+.... .. .
T Consensus 189 a~p~~~~pl----~---~GaDivv~S~tKy~~Gh~d~~~G~v-~~~~~~~~~l~~~----~~-----------------~ 239 (395)
T PRK05967 189 ATPLYFRPL----D---FGVDISIHAATKYPSGHSDILLGTV-SANEKCWPQLLEA----HG-----------------T 239 (395)
T ss_pred cCceecChh----H---cCCCEEEEecccccCCCCCeeEEEE-EcCHHHHHHHHHH----HH-----------------H
Confidence 765432221 1 2699999999999764211 4444 4444332222110 00 0
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecC-----C-----------CceEEEEEEcC
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFP-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~-----------~~~~v~~~~~~ 224 (310)
.|....+..+|..+ .|...+.-++++..+++..+.+.|++.|.+. |.-| | ..++++|.+..
T Consensus 240 ~G~~~~p~da~l~~--rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK05967 240 LGLCAGPDDTYQIL--RGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAA 317 (395)
T ss_pred cCCCCCHHHHHHHH--cCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 11112344455444 4778899999999999999999999999884 4322 1 14688998863
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=116.34 Aligned_cols=238 Identities=10% Similarity=0.056 Sum_probs=145.4
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCcccccCChH---HHHHHHHHh-CcE
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCAT-IGTTAITAVDTLK---PLCDVAKQF-GIW 76 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~-~~~~~~G~~~pl~---~I~~l~~~~-g~~ 76 (310)
+++.+|+. ++.||++++ .+|+++|++++++. +.+++++ ..+|++|.+.+.+ +|.++|++| +++
T Consensus 181 ~~~~~g~~---~~~v~~~~~---g~~~~~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ 248 (431)
T PRK15481 181 MLRYAGFS---ASPVSVDAE---GMQPEKLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVL 248 (431)
T ss_pred HHHHcCCe---EEeeccCCC---CCCHHHHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCce
Confidence 35567776 999999753 48999999998653 3355554 8889999999876 899999999 999
Q ss_pred EEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 77 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
+++|.+++-.... .+.........--++..|+.|.++...-+|+++ .++................
T Consensus 249 ii~De~Y~~~~~~--~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i-~~~~~~~~~~~~~~~~~~~------------ 313 (431)
T PRK15481 249 VIIDDHFALLSSS--PYHSVIPQTTQRWALIRSVSKALGPDLRLAFVA-SDSATSARLRLRLNSGTQW------------ 313 (431)
T ss_pred EEecCchhhhccC--CCCCCCcCCCCCEEEEeeeccccCCCceeEEEe-CCHHHHHHHHHHHhccccC------------
Confidence 9999998644321 111111111112267789999998435566554 4444332221110000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGV----ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
...+...++..++.. ..+++..+...+..+.+.+.|.+. ++.+..+..+..+.+.++..
T Consensus 314 ---------~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~~------- 376 (431)
T PRK15481 314 ---------VSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDTD------- 376 (431)
T ss_pred ---------CCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCCC-------
Confidence 011222222222311 235666777788888888888876 67654455565665655431
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC---CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG---GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.+.+.|.....+..+. ...++|+|+.. .++++++.+++.|.++++
T Consensus 377 -----------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~--~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 377 -----------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST--LNDAEINRLAADLHQALN 430 (431)
T ss_pred -----------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC--CChHHHHHHHHHHHHHhc
Confidence 1345566666776555433331 23589999774 568999999999988753
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=116.88 Aligned_cols=165 Identities=20% Similarity=0.308 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC-cEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG-IWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g-~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
-|+++++++|+++ +.+|.+..++|++..+.||++|+++||++| ++++||.+++.+....+. . .++|
T Consensus 128 ~d~~~l~~~l~~~------t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL-~------~GaD 194 (386)
T PF01053_consen 128 TDLEALEAALRPN------TKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPL-E------LGAD 194 (386)
T ss_dssp TSHHHHHHHHCTT------EEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GG-G------GT-S
T ss_pred hhHHHHHhhcccc------ceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccC-c------CCce
Confidence 3579999999885 458999999999999999999999999999 999999999776443321 1 1599
Q ss_pred eeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 105 SFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+++.|+.|++++... .|++.+++...+.+.+... .. ..|-...+..+|..++ |...
T Consensus 195 ivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~---~~-----------------~~G~~~~p~da~ll~r--gl~T 252 (386)
T PF01053_consen 195 IVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF---RR-----------------LLGATLSPFDAWLLLR--GLRT 252 (386)
T ss_dssp EEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH---HH-----------------HHT-B--HHHHHHHHH--HHTT
T ss_pred EEEeeccccccCCcceeeEEEEECchhhhhhhhcch---hh-----------------hcCccchHHHHHHHhc--CCCc
Confidence 999999999986532 4556655522222211100 00 0111123344555444 6678
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeE-EecC-----C-----------CceEEEEEEcCC
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFE-VVFP-----R-----------HFAVVCFRVSPS 225 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~-----------~~~~v~~~~~~~ 225 (310)
+..++++..++|+.+.+.|++.|.+. |.-| | ..++++|.+.+.
T Consensus 253 l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~ 312 (386)
T PF01053_consen 253 LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG 312 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc
Confidence 89999999999999999999999996 4422 1 246899999873
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-11 Score=112.52 Aligned_cols=253 Identities=11% Similarity=0.077 Sum_probs=148.9
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a 82 (310)
.|.. ++.||+++.+++.+|+++|++++.+..+.+.++.+++++.++|++|.+.+ +++|.++|++||+++++|.+
T Consensus 156 ~g~~---~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~ 232 (468)
T PLN02450 156 TGVE---IVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEI 232 (468)
T ss_pred CCcE---EEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcc
Confidence 5665 88999875445788999999999875433444667778889999999877 56788899999999999999
Q ss_pred cccccccChhhhhhh---c-----CC--CCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCcccccccccccc
Q 046506 83 YAGSACICPEFRHFI---D-----GV--EGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~---~-----~~--~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
++...+....+.... . +. ..-=.+..|..|.++ ...-+|+++..++... ..+.....+.. .
T Consensus 233 Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~-~~~~~~~~~~~-~------ 304 (468)
T PLN02450 233 YSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVV-SAATKMSSFGL-V------ 304 (468)
T ss_pred ccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHH-HHHHHHhhcCC-C------
Confidence 875432211111100 0 00 001146689999987 4466777766544322 22211111110 0
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCC
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNYGV-----ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPS 225 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~ 225 (310)
..+...++...+.. ..+++..++..+..+.+.+.|.+. ++.+. ++..+ .+.+.+...
T Consensus 305 ---------------s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~-~~~~g~flwi~l~~~ 367 (468)
T PLN02450 305 ---------------SSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCL-KSNAGLFCWVDMRHL 367 (468)
T ss_pred ---------------CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCceEEEEEEchHh
Confidence 11112222222322 134556777777888888999886 77664 45555 444544321
Q ss_pred cchhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 226 AVMDKLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. +..... ...++.+.+.+ .|....++..+. +.+++|+++++ .++++++..++.|++++.
T Consensus 368 ~---------------~~~~~~-~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~--~~~~~l~~~l~ri~~~l~ 429 (468)
T PLN02450 368 L---------------KSNTFE-AEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN--MSEETLDLAMKRLKSFVE 429 (468)
T ss_pred c---------------CcCCch-HHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC--CCHHHHHHHHHHHHHHHH
Confidence 0 000001 11245555554 454433333332 35799999773 468899999999998876
Q ss_pred HH
Q 046506 303 AL 304 (310)
Q Consensus 303 ~~ 304 (310)
..
T Consensus 430 ~~ 431 (468)
T PLN02450 430 SD 431 (468)
T ss_pred hc
Confidence 54
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-11 Score=113.15 Aligned_cols=233 Identities=9% Similarity=0.020 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++.|.+....+.....+++.....+.|.+.| ++++.++|++||+++++|.+|.+.......+.-...++ .
T Consensus 214 d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~ 292 (459)
T PRK11522 214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV-Q 292 (459)
T ss_pred CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCC-C
Confidence 678899998754322233557778878888899888 99999999999999999999965433332211111233 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|+++ ..|.+++. ...|.++.+++ .. +.+... ++.... + -++-+..+.+..++++.+..+
T Consensus 293 PDivt--~gK~lggG~~Pigav~~~~~-i~-~~~~~~-~~~~~~-------------T-~~gnp~~~Aaala~L~~i~~~ 353 (459)
T PRK11522 293 PDILC--LAKALGGGVMPIGATIATEE-VF-SVLFDN-PFLHTT-------------T-FGGNPLACAAALATINVLLEQ 353 (459)
T ss_pred CCEEE--echhhhCCCccceeEEEcHH-HH-HHhccC-CcccCC-------------C-CCCCHHHHHHHHHHHHHHhcc
Confidence 68764 47988864 24677777644 33 222211 111110 0 111122334455566655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CeE-EecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDK-RFE-VVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~-~~~-v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
...++..++.++|++.|+++. ++. ++... ...++.+.+... .....+.+.+
T Consensus 354 ---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~----------------------~~~~~i~~~l 408 (459)
T PRK11522 354 ---NLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN----------------------EIGYNFASEM 408 (459)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc----------------------hHHHHHHHHH
Confidence 466778888888888887641 222 22111 234555655432 1234577778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~~ 307 (310)
.++|. ++.+. ..+..++|++++ ...|++||+.++++|.+.+..+.+.
T Consensus 409 ~~~Gv-l~~~~-~~~~~~lr~~Pp-l~~t~~~id~~l~~l~~~l~~~~~~ 455 (459)
T PRK11522 409 FRQRV-LVAGT-LNNAKTIRIEPP-LTLTIEQCEQVLKAARKALAAMRVS 455 (459)
T ss_pred HHCCe-EEEec-CCCCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 78874 44332 124578999966 6799999999999999998877543
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=113.09 Aligned_cols=243 Identities=13% Similarity=0.109 Sum_probs=140.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..+|.. ++.+|.++++++.+|+++|++++++. +.++++..++|++|.+.+ +++|.++|++||+++++
T Consensus 130 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 130 IEMVGGK---PIILETYEEDGFQINVKKLEALITSK------TKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred HHHcCCE---EEEecCCcCcCCcCCHHHHHHhhCcC------ccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 3445655 78888754445679999999998653 336667788999999876 77899999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++....... .... ..+...-.++..|..|.++.| .-+|+++.. +... +.+..-..+....
T Consensus 201 De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~-~~~~-~~~~~~~~~~~~~----------- 266 (384)
T PRK06348 201 DEVYDGFSFYED-FVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAP-DYII-ETAKIINEGICFS----------- 266 (384)
T ss_pred ecccccceeCCC-ccchhhcCCCcCcEEEEecchhccCCccccceeeecC-HHHH-HHHHHHHHhccCC-----------
Confidence 999875543211 1110 111111235668999998744 446776653 4333 2211000000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEE-EEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVV-CFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v-~~~~~~~~~~~~~~~~~ 235 (310)
.-......+..++. ......++..+...+..+++.+.|.+++++.+. +|+.+.+ .+.++....
T Consensus 267 ------~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~~~~~~~~~~-------- 330 (384)
T PRK06348 267 ------APTISQRAAIYALK-HRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH-PPKGSIYAFINIKKTGL-------- 330 (384)
T ss_pred ------CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-cCCeeEEEEEecccCCC--------
Confidence 00011112222222 123345566666777788889999887777655 4555544 444432110
Q ss_pred ccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++...+.+ .|.....+.... +...+|+|+. .++++++..++.|+++
T Consensus 331 ------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 331 ------S-------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT---VGIEVLEEAFNRIEKM 382 (384)
T ss_pred ------C-------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec---CCHHHHHHHHHHHHhh
Confidence 0 1345555544 454444333222 3579999964 4678888888877654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-11 Score=110.20 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=144.1
Q ss_pred ceecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~v 79 (310)
++..|+. ++.+|.++ ++.+.+|++++++.+... .+.++++++++|++|.+.|.+++.++++. +++++++
T Consensus 118 ~~~~g~~---~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~ 189 (364)
T PRK04781 118 ARLQNAP---LVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVV 189 (364)
T ss_pred HHHcCCE---EEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEE
Confidence 4566776 99999853 233568999887655321 14577778899999999999888888765 4799999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|+++.-.... +........... =++.-|+.|.++.| .-+|+++ .+++.+.........|-
T Consensus 190 Deay~~f~~~-~~~~~~~~~~~~-vi~~~SfSK~~gl~GlRvGy~v-~~~~l~~~l~~~~~~~~---------------- 250 (364)
T PRK04781 190 DEAYGEFSDV-PSAVGLLARYDN-LAVLRTLSKAHALAAARIGSLI-ANAELIAVLRRCQAPYP---------------- 250 (364)
T ss_pred eCcchhhcCC-cchHHHHhhCCC-EEEEecChhhcccccceeeeee-CCHHHHHHHHhccCCCC----------------
Confidence 9998644321 111111111111 25668999998744 4467765 45544433222111110
Q ss_pred eeccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
...+...++...+. .+...+.+++..+..+.+.+.|++++++....++..+.+.+.+...
T Consensus 251 -------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~---------- 313 (364)
T PRK04781 251 -------VPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDDA---------- 313 (364)
T ss_pred -------CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCH----------
Confidence 01111222222332 2345566667777888999999988887534466676666655321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+.+.|.....+... ...+++|+++. ++++.++++++|+++.
T Consensus 314 ---------------~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 314 ---------------EAAFQALLAAGVVVRDQRAAPRLSDALRITLG----TPEQNDRVLAALQRTQ 361 (364)
T ss_pred ---------------HHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHHH
Confidence 35667777777654443322 23568999954 4789999999998764
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-11 Score=113.16 Aligned_cols=226 Identities=11% Similarity=0.014 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++.|++.|... +.....|++....+++|.+.| +++|.++|++||+++++|++|.+.............++ .
T Consensus 210 d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i-~ 285 (474)
T PLN02624 210 DLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV-R 285 (474)
T ss_pred CHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCC-C
Confidence 678999988642 123557888888889999888 99999999999999999999974322221111111223 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.++++ ..+|.++++++ .+ ..+. +..... ++ ++-+....++.++++.+..+
T Consensus 286 pDiv~l--sK~lggG~~pigav~~~~~-i~-~~~~--~~~~~~--------------T~-~g~pl~~aaa~aaLe~l~~~ 344 (474)
T PLN02624 286 PDVVIL--GKALGGGVIPVSAVLADKD-VM-LCIK--PGEHGS--------------TF-GGNPLASAVAMAALQVVQDE 344 (474)
T ss_pred CCEEEe--cccccCCCCcceeeeecHH-HH-hHhc--cCCcCC--------------CC-CCCHHHHHHHHHHHHHHHhc
Confidence 788887 4988865 35677766432 32 2211 110000 01 11122334444455544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CC-eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KR-FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~-~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
++.++..++.+++++.|.++ +. +.-+ .....++.+.+.... .. .....++.+.
T Consensus 345 ---~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~v-rg~G~~~~i~l~~~~--------------~~----~~~a~~~~~~ 402 (474)
T PLN02624 345 ---KLAERSAKLGQELRDQLQKIQKQFPKLIKEV-RGRGLLNAVVLNSPK--------------LG----PVSAYDVCLK 402 (474)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-EeeEEEEEEEecCCC--------------cC----hHHHHHHHHH
Confidence 34455556666776666543 22 2212 123344444443311 00 1123467777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|.+.|. ++.+. +..+|||+++ ..+|++||+.+++.|++++...
T Consensus 403 L~e~GV-~v~p~---~~~~lR~~p~-l~~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 403 LKERGL-LAKPT---HDTIIRLAPP-LSISEDELQECSKALSDVLEHD 445 (474)
T ss_pred HHhCCe-EEecC---CCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 877774 44443 4578999955 6799999999999999888654
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=114.66 Aligned_cols=257 Identities=14% Similarity=0.106 Sum_probs=156.1
Q ss_pred CcceecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC-hHHHHHHHHHhCcEEE
Q 046506 1 KAAQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT-LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p-l~~I~~l~~~~g~~l~ 78 (310)
||+..+|+. ++.||.... +....|.+.+|++|.+... .+.+.++++.+-..|...| +++|+++|++||++.+
T Consensus 116 kai~~AGl~---~~vV~~~~~~d~l~td~~~ie~~i~~~G~---~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhl 189 (389)
T PF05889_consen 116 KAIERAGLE---PVVVENVLEGDELITDLEAIEAKIEELGA---DNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHL 189 (389)
T ss_dssp HHHHHTT-E---EEEE-EEEETTEEEEHHHHHHHHHHHHCG---GGEEEEEEESSTTTTB----HHHHHHHHHHHT--EE
T ss_pred HHHHhcCCe---EEEeeccCCCCeeeccHHHHHHHHHHhCC---CCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceE
Confidence 567788998 888886432 2346788999999965422 3567778888777777766 9999999999999999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|.+|++.-.-.....-......+.+|.++-+.-|-|.+|.|.+++...++..+... .. .|-+...
T Consensus 190 vNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~v-s~--~YpGRas------------ 254 (389)
T PF05889_consen 190 VNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAV-SK--EYPGRAS------------ 254 (389)
T ss_dssp EEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHH-HH--TSHSHBT------------
T ss_pred EccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHH-HH--Hhhhhhh------------
Confidence 99999763221110000001124699999999999999999999988777554322 11 1111110
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEE-EEEEcCCcchhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVV-CFRVSPSAVMDKLKTK 234 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v-~~~~~~~~~~~~~~~~ 234 (310)
+...+.+..++..+|..+|...+....++-.++.++|++. -+-++...|..++. .|.......
T Consensus 255 ------~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~------- 321 (389)
T PF05889_consen 255 ------ASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYE------- 321 (389)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCT-------
T ss_pred ------cccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchh-------
Confidence 1133566778888999999999888888888888888652 25555544554433 344433210
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEE---EEEeEECC--------EeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAY---MTHAVLGG--------IYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~~--------~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. . .+..-.|...|..++..- +.+..... ...+-++ ..+..++||||.+++.|+++++
T Consensus 322 --~----~----~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~A-saiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 322 --I----S----QKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAA-SAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp --C----C----SSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEE-E-TT--HHHHHHHHHHHHHHHH
T ss_pred --h----c----cchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHH-HHhCCCHHHHHHHHHHHHHHhC
Confidence 0 0 011135666666665321 11110011 2566675 4578999999999999998764
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=114.47 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=138.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC---ChHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD---TLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---pl~~I~~l~~~~g~~l~vD 80 (310)
+..|+. ++.+|.+++ ++.+|+++|++++++. +.++++.+.+|.+|.+. ++++|+++|++||+++++|
T Consensus 132 ~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~D 201 (384)
T PRK12414 132 RLQGAT---PVAIKLSPE-DFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSD 201 (384)
T ss_pred HHcCCE---EEEEecCcc-ccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEh
Confidence 445665 889998764 4689999999998653 44777788899999974 5888999999999999999
Q ss_pred cccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
+++.-............ .....--++..|.+|.++.| .-+|+++.. +..+....... .+...
T Consensus 202 e~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~-~~l~~~l~~~~-~~~~~------------- 266 (384)
T PRK12414 202 EVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP-AELMDEIRKVH-QFMVF------------- 266 (384)
T ss_pred hhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC-HHHHHHHHHHH-hheec-------------
Confidence 99864433211111110 11111236789999998755 346777654 43332221100 00000
Q ss_pred ceeccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE-EEcCCcchhhhhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF-RVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~-~~~~~~~~~~~~~~~ 235 (310)
. ...+...++...+.. ..+.+..+...+..+.+.+.|.+. ++.+. ++..+.+.| ++.+..
T Consensus 267 ---~----~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~--------- 328 (384)
T PRK12414 267 ---S----ADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFELL-PSEGSFFMLARFRHFS--------- 328 (384)
T ss_pred ---C----CCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCcceEEEEcccccC---------
Confidence 0 011122222222321 234455666777888889999886 67765 445554433 443210
Q ss_pred ccccchhHHHHHHHHHHHH-HHHHhcCcEEEEEeEE--CC--EeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELL-ESINASGKAYMTHAVL--GG--IYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~~--~~--~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
+ ....++. ..+.+.|.....+... .+ .+++|+++.. ++++++..++.|.+
T Consensus 329 ------~-----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~---~~~~~~~~~~rl~~ 383 (384)
T PRK12414 329 ------D-----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK---DDATLVEGARRLCS 383 (384)
T ss_pred ------C-----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC---CHHHHHHHHHHHhh
Confidence 0 0012333 3444566544443322 12 4689999662 57888888877754
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=115.47 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=75.8
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCc--cc--ccCChHHHHHHHHHhCcEEEeec
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTA--IT--AVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~--~G--~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
.|+. +++++.+ + ..++++++++|+++| .+|+.+|.+|. +| ...|+++|+++||+||+++++|+
T Consensus 191 ~G~~---l~~v~~~--~--~t~~~dle~aI~~~T------klV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 191 AGAR---LVEVGTT--N--RTHLRDYEQAINENT------ALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred CCcE---EEEECCC--C--CCCHHHHHHhcCccC------eEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 4554 7777764 2 467999999998764 37777888774 45 46799999999999999999999
Q ss_pred ccccccccChhh----hhhhcC--CCCCCeeeeecccccccccceEEEEEeCc
Q 046506 82 AYAGSACICPEF----RHFIDG--VEGADSFSLNAHKWFFTTLDCCCLWVKDP 128 (310)
Q Consensus 82 a~~~~~~~~~~~----~~~~~~--~~~~D~~~~~~hK~l~~p~g~g~l~v~~~ 128 (310)
++|... ....+ .+.... -.++|++++|+|||+++| ++|+++.+++
T Consensus 258 gsG~l~-~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~ 308 (464)
T PRK04311 258 GSGSLV-DLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKE 308 (464)
T ss_pred CCcccc-cchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcHH
Confidence 654321 00000 000000 136999999999999999 4788877644
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-11 Score=112.69 Aligned_cols=238 Identities=13% Similarity=0.045 Sum_probs=138.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|+++++++.+|++++++++.+. +.++++..++|++|.+.+ +++|+++|++||+++++
T Consensus 133 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 133 ALLAGAE---PYFLNCTAENGFLPDFDAVPESVWRR------CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred HHhcCCe---EEEeeccccCCCCCCHHHHHHHHhhc------ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 3456776 99999976545789999999998654 347777889999999887 78899999999999999
Q ss_pred ecccccccccCh-hhhh---hhcCCCC----CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccc
Q 046506 80 DAAYAGSACICP-EFRH---FIDGVEG----ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 80 D~a~~~~~~~~~-~~~~---~~~~~~~----~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
|.++........ .... ....... --+++.|..|.++.| .-+|+++. ++..+.+..... .+...
T Consensus 204 De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~-~~~l~~~~~~~~-~~~~~------ 275 (393)
T TIGR03538 204 DECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAG-DAEILKAFLRYR-TYHGC------ 275 (393)
T ss_pred CcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEec-CHHHHHHHHHHH-Hhhcc------
Confidence 999864432210 0000 0000100 115779999965544 45676654 444433321110 01000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchh
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMD 229 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~ 229 (310)
........+++..+. .+.+++..++..+..+.+.+.|.+. +.+..+..+..+.+.++ .+
T Consensus 276 --------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~-~~--- 335 (393)
T TIGR03538 276 --------------AMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--LDLELPDAGFYLWPKVP-GD--- 335 (393)
T ss_pred --------------CcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECC-CC---
Confidence 001112222222222 2345666667777777788888753 33333334445555543 11
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEE--------CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVL--------GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--------~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.+.+ .|.....+..+ .+.+++|+|+.. ++++++..++.|+++
T Consensus 336 --------------------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~---~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 336 --------------------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA---PLEECVEAAERIRSF 392 (393)
T ss_pred --------------------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC---CHHHHHHHHHHHHHh
Confidence 0345666654 45444333322 135689999663 578888888887654
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=111.89 Aligned_cols=239 Identities=13% Similarity=0.064 Sum_probs=138.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|+. ++.||+++++.+.+|+++|++.+.+. +.++++..++|++|.+.+ +++|+++|++|++++++
T Consensus 134 ~~~~g~~---~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 134 ALLAGAE---PYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred HHhcCCE---EEEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 4567776 99999986545789999999988653 346777788999999875 77788899999999999
Q ss_pred ecccccccccChhhh-hhh---cCCC--CCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccc
Q 046506 80 DAAYAGSACICPEFR-HFI---DGVE--GAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 80 D~a~~~~~~~~~~~~-~~~---~~~~--~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
|.+++.......... ... .... ..| ++..|..|.++.| .-+|+++. ++..++...... .+....
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~-~~~l~~~~~~~~-~~~~~~----- 277 (396)
T PRK09147 205 DECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAG-DAALLKKFLLYR-TYHGCA----- 277 (396)
T ss_pred eccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecC-CHHHHHHHHHHh-hhcccC-----
Confidence 999875543211000 000 0010 012 6779999976555 45676654 444443321111 111000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchh
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMD 229 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~ 229 (310)
...+...+++..+ ..+.+.+..+...+..+.+.+.|.+. +.+..+..+..+.+.++..
T Consensus 278 ---------------~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~~~---- 336 (396)
T PRK09147 278 ---------------MPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVPGD---- 336 (396)
T ss_pred ---------------CCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECCCC----
Confidence 0111112222222 22345566666777777777777753 3333333455555554311
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE--------CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL--------GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--------~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.+. +.|.....+..+ .+.+++|+++.. ++++++..++.|++.
T Consensus 337 --------------------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~---~~~~l~~~l~rl~~~ 393 (396)
T PRK09147 337 --------------------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA---PLAECVEAAERIVDF 393 (396)
T ss_pred --------------------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC---CHHHHHHHHHHHHHH
Confidence 034556664 456544433322 125789999663 467788888877765
Q ss_pred H
Q 046506 301 L 301 (310)
Q Consensus 301 ~ 301 (310)
+
T Consensus 394 ~ 394 (396)
T PRK09147 394 C 394 (396)
T ss_pred h
Confidence 4
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-11 Score=112.09 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc----CChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV----DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~----~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++++++|.+. +.+|++....++.|.+ .++++|.++|++||+++++|.+|.+.......+.....++ .
T Consensus 168 d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv-~ 240 (397)
T TIGR03246 168 DLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV-T 240 (397)
T ss_pred CHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCC-C
Confidence 789999998643 4467777677777755 3399999999999999999999854433222111011223 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+++ ..|.+++..-.|.+..++. .. +.+... ... .++ ++-+....+..++++.+.
T Consensus 241 pDi~t--~~K~lggG~pigav~~~~~-i~-~~~~~~----~~~------------~t~-~~~p~~~aaa~a~l~~~~--- 296 (397)
T TIGR03246 241 PDILT--SAKALGGGFPIGAMLTTTE-IA-AHLKVG----THG------------TTY-GGNPLACAVAGKVLDLVN--- 296 (397)
T ss_pred CCEEE--eehhhhCCcceeEEEEcHH-HH-HhccCC----CcC------------CCC-CCCHHHHHHHHHHHHHHh---
Confidence 67764 5788864444666665433 32 333210 000 011 111223334445555442
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC-CeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDK-RFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
-+++.++..++.+++.+.|+++. .+.++.. ....++.+.+.+.. ......+...|.+
T Consensus 297 ~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~--------------------~~~~~~~~~~l~~ 356 (397)
T TIGR03246 297 TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAY--------------------QGKAKQFVNAAAE 356 (397)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCch--------------------hhHHHHHHHHHHH
Confidence 24567788888888888887652 1222211 12334444443210 1223567778888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|.+... . +.+++|++++ ...|++||+.++++|.+.+..+
T Consensus 357 ~Gv~~~~-~---g~~~lR~~p~-~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 357 EGVIALI-A---GPNVVRFAPS-LVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CCeEEee-c---CCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 8865432 1 3468999855 6789999999999999887653
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=113.49 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=142.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++.+.+.+|++++++.+.+. +.+++++..+|++|.+.+ +++|+++|++||+++++
T Consensus 133 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (388)
T PRK07366 133 VYLAGGQ---IYPMPLRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVH 203 (388)
T ss_pred HHhcCCE---EEEEECCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 4567776 99999986555678999998877543 346777778999999877 55678899999999999
Q ss_pred ecccccccccChh-hhhhhcCCC-CCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPE-FRHFIDGVE-GAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~-~~~~~~~~~-~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|.++.-....... ... ...+. .-+ ++..|..|.++.| .-+|+++ .++..+.........+....
T Consensus 204 De~Y~~~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v-~~~~li~~l~~~~~~~~~~~--------- 272 (388)
T PRK07366 204 DFPYVDLVFDGEVEPPS-ILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI-GNAQLIQALRQVKAVVDFNQ--------- 272 (388)
T ss_pred ecchhhcccCCCCCCCC-hhhCCCCcccEEEEeecccccCCcchhheehc-CCHHHHHHHHHHHhhcccCC---------
Confidence 9998654432111 111 11111 112 4568999999654 4566665 45544432211111000000
Q ss_pred CCCceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
...+ ..+++..+ ....+++..++..+..+.+.+.|++. ++.+..+..+..+.+.+++.-
T Consensus 273 -----------~~~~-~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~~~~------ 333 (388)
T PRK07366 273 -----------YRGI-LNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKLPEPW------ 333 (388)
T ss_pred -----------CHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCccc------
Confidence 0000 11112222 23556777888888888899999876 665543445555555554310
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..-..++.+.+. +.|.....+.... +.+++|+++.. ++++++..++.|+++
T Consensus 334 --------------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 334 --------------QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH---DPDILEEAVERIAAF 387 (388)
T ss_pred --------------CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC---CHHHHHHHHHHHHHh
Confidence 000134555554 4554444333222 24789999652 588899888888764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-10 Score=110.74 Aligned_cols=268 Identities=15% Similarity=0.158 Sum_probs=151.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.++.++++.|.+|+++|++++++....+..+.++++...+|++|.+.+ +++|+++|++||++++.
T Consensus 233 ~~~~g~~---~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 233 IALHGGT---LVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred HHHcCCE---EEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3455665 89999987555789999999999875544434667777788999999865 67889999999999999
Q ss_pred eccccccccc-Chh---hhhhhc--CC--CCCCeee-eeccccccc--ccceEEEEEe--CchhHHhhhccCCccccccc
Q 046506 80 DAAYAGSACI-CPE---FRHFID--GV--EGADSFS-LNAHKWFFT--TLDCCCLWVK--DPSDLVNSLSTNPEYLKNKA 146 (310)
Q Consensus 80 D~a~~~~~~~-~~~---~~~~~~--~~--~~~D~~~-~~~hK~l~~--p~g~g~l~v~--~~~~~~~~~~~~~~y~~~~~ 146 (310)
|.++.-..+. ... ...... +. .....++ .|..|.+++ ..-+|++.+. ++.......... . ...
T Consensus 310 DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~-~-~~~-- 385 (534)
T PLN02231 310 DEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVA-S-VNL-- 385 (534)
T ss_pred EccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHH-h-hhc--
Confidence 9998654432 111 111110 00 0112343 589997642 3446776553 343332221110 0 000
Q ss_pred cccccccCCCCceeccCCCcchHHHHHHHHH--hCHH-------HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE
Q 046506 147 TESKQVVDYKDWQITLSRRFRSLKLWFVLRN--YGVA-------NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV 217 (310)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-------~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~ 217 (310)
++.......+...++- .|.. ..+++.+...++++.+.+.|.+++++.+. +|+.+.
T Consensus 386 ---------------~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~-~p~Ggf 449 (534)
T PLN02231 386 ---------------CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCN-KAEGAM 449 (534)
T ss_pred ---------------CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCeee
Confidence 0000011111111110 0111 22344667888889999999988888875 566665
Q ss_pred EEE-EEc-CCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC---CEeEEEEEccCCCCCHHHHH
Q 046506 218 VCF-RVS-PSAVMDKLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG---GIYAIRFAAGATLTEERHVM 291 (310)
Q Consensus 218 v~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~---~~~~iRis~~~~~~t~edi~ 291 (310)
+.| .+. +... ...++... . .-...+...+. +.|...+.+.... +...+|+++ ..++++++
T Consensus 450 ylw~~l~lp~~~---~~~~~~~~--~------~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~---~~~~e~l~ 515 (534)
T PLN02231 450 YLFPRIHLPQKA---IKAAEAAK--T------APDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI---LPQEDKIP 515 (534)
T ss_pred EEeccccCcHHH---HHHHhhcC--C------CcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe---CCCHHHHH
Confidence 555 222 1100 00000000 0 00123444454 4565555544443 345799985 36889999
Q ss_pred HHHHHHHHHHHHHhhc
Q 046506 292 VAWTVVQEHLEALLSA 307 (310)
Q Consensus 292 ~li~~l~~~~~~~~~~ 307 (310)
..++.|.++.+++.++
T Consensus 516 eal~RL~~~~~~~~~~ 531 (534)
T PLN02231 516 AIVSRLTEFHKSFMDE 531 (534)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988776553
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=113.99 Aligned_cols=266 Identities=15% Similarity=0.125 Sum_probs=161.9
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC-hHHHHHHHHHhCcEEEee
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT-LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p-l~~I~~l~~~~g~~l~vD 80 (310)
+|+++|.. |+.|.++.+| .||+.+|+.+-.++.... ..+.++.++| .|..+| |++++++.|+||-.+++|
T Consensus 646 SA~Magmk---vvpV~~~~~G--~id~~dLk~kaekh~~~L---aa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlD 716 (1001)
T KOG2040|consen 646 SAAMAGMK---VVPVGCDANG--NIDMVDLKAKAEKHKDNL---AALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLD 716 (1001)
T ss_pred hHHhcCCE---EEEeeccCCC--CccHHHHHHHHHHhhhhh---heeEEecccc-cccccccHHHHHHHHHhcCCEEEec
Confidence 57899998 9999999765 999999999998876632 2444555555 577654 999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccccc-CCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV-DYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~ 159 (310)
||-.-.....-. .+.-++|+.-.+.||+|+.|-|.|.=-+.+-- .++ ...+|+......+.... +....+
T Consensus 717 GANMNAqVGlc~-----pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIg-VK~---HLapfLP~HpVvs~~~~~~~~~~g 787 (1001)
T KOG2040|consen 717 GANMNAQVGLCR-----PGDIGADVCHLNLHKTFCIPHGGGGPGMGPIG-VKK---HLAPFLPSHPVVSPGRPEDTSPVG 787 (1001)
T ss_pred CCCccceecccC-----CccccccceeecccceeeecCCCCCCCCCccc-hhh---hccccCCCCCccCCCCCCCCCCcc
Confidence 986322211100 12236999999999999998776642211110 011 11344443321110000 000011
Q ss_pred eccCCCc---chHH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEE--EEEcCCcchhhhhh
Q 046506 160 ITLSRRF---RSLK-LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVC--FRVSPSAVMDKLKT 233 (310)
Q Consensus 160 ~~~~~~~---~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~--~~~~~~~~~~~~~~ 233 (310)
--.+-++ ..++ -|+.++.+|..|+.+-.+-..-++.|+.++|+.. ++++-....+.+. |.+.-.. +-+.
T Consensus 788 sVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~---fK~~ 862 (1001)
T KOG2040|consen 788 SVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRP---FKKT 862 (1001)
T ss_pred ceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechh---hccc
Confidence 1111112 2222 3888999999999999998999999999999974 5554322222332 3332210 0000
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ +-...++.++|...| +..+...|.-.+.+=|-.+- --+.+|+|+|++++-.+-++.
T Consensus 863 a------------gieavDvAKRL~DYg-FHaPTmswPV~gtLMIEPTE-SE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 863 A------------GIEAVDVAKRLMDYG-FHAPTMSWPVAGTLMIEPTE-SEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred c------------CCcHHHHHHHHHhcc-CCCCccccccCCceEeccCc-cccHHHHHHHHHHHHHHHHHH
Confidence 0 111257888998887 44443445555666666453 356789999999987666554
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-11 Score=110.10 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=143.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh---HHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL---KPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl---~~I~~l~~~~g~~l~vD 80 (310)
+..|+. ++.+|.+++ ..++++|+++++.... .+.+++++.++|++|.+.+. ++|+++|++||+++++|
T Consensus 133 ~~~g~~---~~~v~~~~~---~~~~~~l~~~l~~~~~---~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~D 203 (395)
T PRK08175 133 VIAGAQ---VRSVPLVEG---VDFFNELERAIRESYP---KPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHD 203 (395)
T ss_pred HHcCCe---EEEEecccC---CCcHHHHHHHHhhccC---CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEe
Confidence 456776 889999864 3458999998875311 24577777788999998887 78999999999999999
Q ss_pred cccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
.+++............. .+..+..+++.|..|.++.| .-+|+++ .+++.+....... .+.....
T Consensus 204 e~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~-~~~~l~~~~~~~~-~~~~~~~----------- 270 (395)
T PRK08175 204 LAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMV-GNPELVSALARIK-SYHDYGT----------- 270 (395)
T ss_pred cchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeee-CCHHHHHHHHHHH-hhcccCC-----------
Confidence 99865432111101100 11111235679999999765 3356665 4554443221110 1110000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
. ......+..+++. ....+++..++..+..+++.+.|.+. ++.+..+..+..+.+.+...-.
T Consensus 271 -----~-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~---------- 332 (395)
T PRK08175 271 -----F-TPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYA---------- 332 (395)
T ss_pred -----C-cHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccC----------
Confidence 0 0111112222221 23446666777778888899999887 6766534456666666654200
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
. .-..++...+.++.++.+.+. .+ .+.+.+|+++. .+++.+...++.|.+++.+
T Consensus 333 ----~-----~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~---~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 333 ----A-----MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI---ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred ----C-----CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHh
Confidence 0 001356565554333444443 22 23468999964 4678888888888777654
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-13 Score=118.41 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=108.9
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccC---ChHHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVD---TLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~---pl~~I~~l~~~~g~~l~vD 80 (310)
+.|.. ++.++.+++ +++|+++|++.+........+|.+|+++..++.. |++. +|++|+++||+||++||+|
T Consensus 90 ~~G~~---~~~l~~~~~--G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmD 164 (290)
T PF01212_consen 90 LSGAK---LIPLPSDDD--GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMD 164 (290)
T ss_dssp HTTCE---EEEEBECTG--TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEE
T ss_pred hcCcE---EEECCCccc--CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEe
Confidence 34555 888888753 5999999999999865522345555655444432 7765 4777889999999999999
Q ss_pred cccccccccCh--hhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 81 AAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 81 ~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
||.-+...... ..++.. .++|+++++++|.++.|. |.+++-+++.+.+.+.. ..++.+.-
T Consensus 165 GARl~~a~~~~~~~~~e~~---~~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~-~k~~gg~~------------ 226 (290)
T PF01212_consen 165 GARLANAAAALGVSLAEIA---AGADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQ-RKRLGGGM------------ 226 (290)
T ss_dssp ETTHHHHHCHHHHHHHHHH---TTSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHH-HHHHTHHH------------
T ss_pred hhhHHHhhhcccccHHHHh---hhCCEEEEEEEccccccc--ceEEEechHHHHHHHHH-HHHhccCe------------
Confidence 99865544221 112222 469999999999999885 33444556544433211 01111100
Q ss_pred eeccCCCcchHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEE
Q 046506 159 QITLSRRFRSLKL---WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVV 218 (310)
Q Consensus 159 ~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v 218 (310)
.+ ...+.+ +........+.+....++..++++++.+.|..+ ++.+..++.+|.+
T Consensus 227 -~~----~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~-~~~~~~~~~tn~~ 283 (290)
T PF01212_consen 227 -RQ----AGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEAL-GGVLPRPVETNQV 283 (290)
T ss_dssp -HH----TTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEE-CEEEETTSS-HHH
T ss_pred -ee----cceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCcEE
Confidence 00 011111 111111223444677888999999999999987 5556656655533
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=106.31 Aligned_cols=112 Identities=26% Similarity=0.221 Sum_probs=82.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|.. ++.++.+.++....+.+.+++... ...+.++++++.++.+|...|+++|+++|+++|+++|+|++
T Consensus 59 ~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a 130 (170)
T cd01494 59 AELAGAK---PVPVPVDDAGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAA 130 (170)
T ss_pred HHhcCCE---EEEeccCCCCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecc
Confidence 3455665 888988765422233334443322 12367899999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEe
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVK 126 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~ 126 (310)
++.+........ ....++|+++.|+|||+++ .|+|++++|
T Consensus 131 ~~~~~~~~~~~~---~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 131 SAGGASPAPGVL---IPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccccccc---cccccCCEEEEEcccccCC-CceEEEEeC
Confidence 987776542211 1123699999999999998 689999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=113.23 Aligned_cols=229 Identities=11% Similarity=0.044 Sum_probs=139.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEeec
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~vD~ 81 (310)
+..|.. ++.+|.+++ +.+|++++++++++. +.++++++++|++|.+.|.++|.++|++ +|+++++|+
T Consensus 116 ~~~g~~---~~~v~~~~~--~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De 184 (352)
T PRK03321 116 QVAGAT---PVQVPLTPD--HTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDE 184 (352)
T ss_pred HHcCCE---EEEccCCCC--CCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEec
Confidence 455665 888888753 479999999998653 3477788899999999999999999997 599999999
Q ss_pred ccccccccChhhhhhhcCC-CCCC-eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 82 AYAGSACICPEFRHFIDGV-EGAD-SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~-~~~D-~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
++............ .... ..-+ ++..|..|.++.| .-+|+++. ++..+.........+
T Consensus 185 ~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~----------------- 245 (352)
T PRK03321 185 AYVEYVRDDDVPDG-LELVRDHPNVVVLRTFSKAYGLAGLRVGYAVG-HPEVIAALRKVAVPF----------------- 245 (352)
T ss_pred hHHHhccCcCCCcH-HHHHhhCCCEEEEecchHHhhhHHHhhhhhcC-CHHHHHHHHHhcCCC-----------------
Confidence 98654432110000 0000 1123 3456889998754 23677665 444443221111000
Q ss_pred eeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 159 QITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
....+...++...+ ..+.+.+..++..+..+.+.+.|.+. ++.+. ++..+.+.+.+...
T Consensus 246 ------~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l~~~------------ 305 (352)
T PRK03321 246 ------SVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPLGER------------ 305 (352)
T ss_pred ------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeCCCC------------
Confidence 01122222222222 23444555555566667788888875 66543 34555555544221
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.|.+.|. .+.+. +...||+++ .+.+++++++++|+++.+
T Consensus 306 ------------~~~~~~~l~~~gI-~v~~~---~~~~iRi~~----~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 306 ------------TADFAAAAAEAGV-VVRPF---AGEGVRVTI----GAPEENDAFLRAARAWRA 350 (352)
T ss_pred ------------HHHHHHHHHHCCE-EEEcc---CCCcEEEee----CCHHHHHHHHHHHHHHhc
Confidence 1356677767764 44432 234599984 468899999999998654
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=117.42 Aligned_cols=179 Identities=16% Similarity=0.091 Sum_probs=112.9
Q ss_pred ecCCCCCCEEEEecCCCCC---cccCHH-----HHHHHHHHHH-H--cCCCcEEEEEeccCCcccccCChHHHHHH-HHH
Q 046506 5 IVGIDVKNFRAIKTTKSSS---YGLSPD-----SLMAKINSDV-E--AGLIPLFLCATIGTTAITAVDTLKPLCDV-AKQ 72 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~---~~id~~-----~Le~~i~~~~-~--~~~~~~~v~~~~~~~~~G~~~pl~~I~~l-~~~ 72 (310)
+.|.. .+++++.-+.- +.++++ .++++|.+.. + ....|.-.++...+|..|.+-++++|+++ ||.
T Consensus 234 LsGa~---PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~ 310 (720)
T PRK13578 234 QAGAT---PVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHL 310 (720)
T ss_pred HcCCe---EEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhcc
Confidence 45555 77777654321 134654 4999998751 1 11234334444566778999999999998 788
Q ss_pred hCcEEEeecccccccccChhhhhhh--cCCCCCC----eeeeecccccccccceEEEEEeCch-----------hHHhhh
Q 046506 73 FGIWVHVDAAYAGSACICPEFRHFI--DGVEGAD----SFSLNAHKWFFTTLDCCCLWVKDPS-----------DLVNSL 135 (310)
Q Consensus 73 ~g~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~D----~~~~~~hK~l~~p~g~g~l~v~~~~-----------~~~~~~ 135 (310)
++ .+|||.||++...+.+.++.+. ..-.++| +++-|.||++.+..+++++++++.. .+.+++
T Consensus 311 ~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al 389 (720)
T PRK13578 311 CD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAF 389 (720)
T ss_pred CC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHH
Confidence 88 9999999998887666533211 1113689 9999999999999999999997642 122221
Q ss_pred ----ccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-cCCCCeEEe
Q 046506 136 ----STNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLV-GSDKRFEVV 210 (310)
Q Consensus 136 ----~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L-~~~~~~~v~ 210 (310)
+.+|.|.- .+++-.+.+.+....-++++++..+.+..+++.| +..++++++
T Consensus 390 ~m~qSTSPsY~L------------------------mASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~ 445 (720)
T PRK13578 390 MLHASTSPFYPL------------------------FAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPF 445 (720)
T ss_pred HHHcCCChHHHH------------------------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 11222211 1111111222222233566777888888899888 667888877
Q ss_pred c
Q 046506 211 F 211 (310)
Q Consensus 211 ~ 211 (310)
.
T Consensus 446 ~ 446 (720)
T PRK13578 446 I 446 (720)
T ss_pred c
Confidence 4
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=112.34 Aligned_cols=204 Identities=17% Similarity=0.057 Sum_probs=115.2
Q ss_pred cEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceE
Q 046506 45 PLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCC 121 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g 121 (310)
+.+|+++ +++++|.+ .||++|+++|++||++++||.||+.+......... .... ++|+++.+++|++.++. .|
T Consensus 137 ~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~-~~~~-~~divv~s~SKalaG~r-~G 212 (346)
T TIGR03576 137 TSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP-ALDL-GADLVVTSTDKLMDGPR-GG 212 (346)
T ss_pred ceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCC-HHHc-CCcEEEeccchhccccc-eE
Confidence 3455554 57889998 78999999999999999999999876432111111 1111 37899999999876665 35
Q ss_pred EEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 046506 122 CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLV 201 (310)
Q Consensus 122 ~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L 201 (310)
+++ .++..+........+|..... ++.+.++.++++.+ ..+.+.+...++.+.+.+.+
T Consensus 213 ~v~-~~~~li~~l~~~~~~~~~s~~------------------~~~~~aa~~aL~~~---~~~~~~~~l~~r~~~~~~~l 270 (346)
T TIGR03576 213 LLA-GRKELVDKIKSVGEQFGLEAQ------------------APLLAAVVRALEEF---ELSRIRDAFKRKEEVYLRLF 270 (346)
T ss_pred EEE-eCHHHHHHHHHhhcCcccCcc------------------HHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHH
Confidence 554 455454333233333332110 11223333444332 23455566666777777777
Q ss_pred cCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEc
Q 046506 202 GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAA 280 (310)
Q Consensus 202 ~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~ 280 (310)
.+ +.+. ++..+.+.+.+.+.+ + .+...+.|.+.|........+ ...+++|||+
T Consensus 271 ~~---~~~~-~~~~~f~~~~~~~~~---------------~-------~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~ 324 (346)
T TIGR03576 271 DK---LNVE-RTPTGFVIKGVEEEK---------------L-------IEIGLDLLRNYGIITITAVGMPGASKTLRFDL 324 (346)
T ss_pred Hh---CCCC-cCCCeEEEEeCCCCC---------------H-------HHHHHHHHHhCCEEEeCCcccCCCCCeEEEEE
Confidence 64 3333 334555555544311 0 023344455566544432222 2357999996
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 046506 281 GATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 281 ~~~~~t~edi~~li~~l~~~ 300 (310)
..+.-+..+.+.++++|++-
T Consensus 325 ~~~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 325 AAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred ecChHHhcCHHHHHHHHHhc
Confidence 64321233899999999764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=112.88 Aligned_cols=185 Identities=10% Similarity=0.079 Sum_probs=113.1
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|.. ++++++++. ++.+|+++++++|++++ .+|++++. .|...++++|.++|++||+++++|+||+
T Consensus 130 ~~G~~---pv~vdvd~~-~~~id~~~le~~i~~~t------kaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a 196 (438)
T PRK15407 130 QNGLV---PVFVDVELP-TYNIDASLLEAAVSPKT------KAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDA 196 (438)
T ss_pred HcCCE---EEEEecCCC-cCCcCHHHHHHHcCcCC------eEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccc
Confidence 34555 788888753 57899999999997643 35666653 5778899999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccc------c-------ccc-c
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNK------A-------TES-K 150 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~------~-------~~~-~ 150 (310)
.|....... ...++.+-++++...|.+.+.. .|+++++++.......... .+-... . ... .
T Consensus 197 ~G~~~~g~~---~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK15407 197 LGSTYDGRM---TGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFR-DWGRDCWCAPGCDNTCGKRFGWQLG 271 (438)
T ss_pred hhhhcCCee---eeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHHH-HhCcccccccccccccccccccccc
Confidence 776543211 1122334455566667776543 4788888775433221110 100000 0 000 0
Q ss_pred c-ccCC-CCce-eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCe
Q 046506 151 Q-VVDY-KDWQ-ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRF 207 (310)
Q Consensus 151 ~-~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~ 207 (310)
. .+.+ ..+. ...|..+..-.+.+++.......++++.++..++++++.+.|.++++.
T Consensus 272 ~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~ 331 (438)
T PRK15407 272 ELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDF 331 (438)
T ss_pred cccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 0 0000 0000 012333444455566655556788999999999999999999988753
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-11 Score=109.36 Aligned_cols=230 Identities=13% Similarity=0.036 Sum_probs=138.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++.++.++ ++.+|++++++++.+.. +.+++++..+|++|.+.+.+++.++|+.+++++++|.+|
T Consensus 130 ~~~g~~---~~~~~~~~--~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y 199 (368)
T PRK03317 130 RGTHTE---WVEGPRAA--DFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAY 199 (368)
T ss_pred HhcCCe---eEEcccCC--CCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCc
Confidence 344554 66666553 46899999999997431 336677788899999999999999999999999999999
Q ss_pred ccccccC-hhhhhhhcCCCCCC-eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 84 AGSACIC-PEFRHFIDGVEGAD-SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~D-~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+...... ......... .-+ ++..|..|.++.| .-+|+++. ++..+.........|.
T Consensus 200 ~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~------------------ 258 (368)
T PRK03317 200 AEFRRSGTPSALTLLPE--YPRLVVSRTMSKAFAFAGGRLGYLAA-APAVVDALRLVRLPYH------------------ 258 (368)
T ss_pred hhhcccCCcCHHHHHHh--CCCEEEEEechhhhccchhhhhhhhC-CHHHHHHHHhcCCCCC------------------
Confidence 7543211 111111111 123 4556999998754 23466654 4444322211111110
Q ss_pred ccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
...+...++...+. .+.+.+.+++..+..+.+.+.|++. ++.+. ++..+.+.|...+.
T Consensus 259 -----~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------------- 317 (368)
T PRK03317 259 -----LSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-GLRVA-PSDANFVLFGRFAD-------------- 317 (368)
T ss_pred -----CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEeccCC--------------
Confidence 01122222222221 2344555566677777888888876 77765 45555544421111
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.+.++|.+ +.+. ...+++|+++. +.+++++++++|+++..
T Consensus 318 ----------~~~~~~~l~~~Gv~-v~~~--~~~~~iRi~~~----~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 318 ----------RHAVWQGLLDRGVL-IRDV--GIPGWLRVTIG----TPEENDAFLAALAEVLA 363 (368)
T ss_pred ----------HHHHHHHHHHCCEE-EEeC--CCCCeEEEecC----CHHHHHHHHHHHHHHHH
Confidence 13566777777754 4332 23568999943 56899999999998874
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-11 Score=109.82 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=133.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
-|+++|++.+.+. ..+|++....++.|.+.| +++|.++|++||+++++|.+|.+.......+.....++
T Consensus 167 ~d~~~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv- 239 (395)
T PRK03715 167 NDIASVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGI- 239 (395)
T ss_pred chHHHHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCC-
Confidence 4688999888543 447888888888898887 99999999999999999999975433332211111233
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|++++ .|.+++....|.+..+++ .. .+ .+.+... ++ ++.+..+.+..++++.+..
T Consensus 240 ~PDi~t~--gK~lg~G~p~~av~~~~~-i~--~~--~~~~~~~--------------T~-~g~pl~~aaala~L~~l~~- 296 (395)
T PRK03715 240 EPDIMTL--GKGIGGGVPLAALLAKAE-VA--VF--EAGDQGG--------------TY-NGNPLMTAVGVAVISQLLA- 296 (395)
T ss_pred CCceeee--hhhhhCCcceEEEEEccc-cc--cc--cCCCcCC--------------CC-CCCHHHHHHHHHHHHHHHh-
Confidence 3788766 499987555777766554 21 11 1111111 11 1222334445556655532
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
++++++..++.++|+++|+++ .++.-+. -...++.+.+.... .....+....+.
T Consensus 297 --~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~~--------------------~~~~~~~~~~~~ 353 (395)
T PRK03715 297 --PGFLEGVRARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKDI--------------------GPQIVEKARDMQ 353 (395)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCch--------------------HHHHHHHHHhcc
Confidence 456778888888888888753 1232121 12445556554310 011112222333
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
++|.+ +.+. +..++|++++ ...|++||+.++++|++.+..+
T Consensus 354 ~~Gi~-~~~~---~~~~lR~~p~-l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 354 PDGLL-LNAP---RPNLLRFMPA-LNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred CCCEE-Eeec---CCCEEEEeCC-cccCHHHHHHHHHHHHHHHHhh
Confidence 44643 3221 2468999966 6899999999999999988764
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-11 Score=107.59 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=138.3
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
+++..|+. ++.||.++. .+|++.+++ . .+.+++++.++|++|.+.+ +++|+++|+++|++++
T Consensus 95 ~~~~~G~~---v~~vp~~~~---~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI 159 (332)
T PRK06425 95 YAFTHGIR---ISALPFNLI---NNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLF 159 (332)
T ss_pred HHHHcCCe---EEEEeCCcc---cCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEE
Confidence 45677887 999999752 456555442 1 1446777789999999877 5667788899999999
Q ss_pred eecccccccccC-hhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 79 VDAAYAGSACIC-PEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 79 vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
+|.+++-..... +......... .--++..|+.|.++.| .-+|+++. +++.++.......++.
T Consensus 160 ~DE~Y~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~~~l~GlRiGy~v~-~~~li~~l~~~~~~~~-------------- 223 (332)
T PRK06425 160 IDEAFIDFVPNRAEEDVLLNRSY-GNVIIGRSLTKILGIPSLRIGYIAT-DDYNMKISRKITEPWS-------------- 223 (332)
T ss_pred EecchhccccccchhHHHHhccC-CCEEEEeecHHhcCCchhhheeeec-CHHHHHHHHHcCCCCc--------------
Confidence 999986443211 0111111110 1124557999999855 33566654 4544433222111110
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVAN-LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
. .... ...+.....+. .++..+...+..+++.+.|.+. ++.+..++..+.+.+.++..
T Consensus 224 ---~------~~~~-~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~~~---------- 282 (332)
T PRK06425 224 ---V------CDPA-IDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIPDA---------- 282 (332)
T ss_pred ---c------CHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcCCH----------
Confidence 0 0111 11222222222 3566777778888899999887 78776566777776665421
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+.+.|.....+..+. +.+++|+|+. ++++.++|+++|++++
T Consensus 283 ---------------~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 283 ---------------HDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR----RRSFNIKLVNALRNFL 331 (332)
T ss_pred ---------------HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHh
Confidence 356677777775444433332 2469999944 4789999999998764
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-11 Score=108.93 Aligned_cols=213 Identities=12% Similarity=0.058 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.+++. +.+|+++..++++|... ++++|.++|++||+++++|++++..............++ .
T Consensus 159 d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~-~ 231 (379)
T TIGR00707 159 DIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI-E 231 (379)
T ss_pred CHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCC-C
Confidence 799999998754 34677777777777543 389999999999999999999964322111000001111 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++ +.+|+++....+|+++.+ ++.+ +.+... .+ .. .+ ++-++...++.++++.+..
T Consensus 232 ~d~~--t~sK~~~~G~riG~~~~~-~~~~-~~~~~~-~~-~~--------------~~-~~~~~~~~aa~aaL~~~~~-- 288 (379)
T TIGR00707 232 PDII--TLAKGLGGGVPIGATLAK-EEVA-EAFTPG-DH-GS--------------TF-GGNPLACAAALAVLEVIEK-- 288 (379)
T ss_pred CCEE--EEcccccCCcccEEEEEc-HHHH-hhhcCC-CC-CC--------------CC-CCCHHHHHHHHHHHHHHHh--
Confidence 4655 458999965668887664 4333 322110 00 00 00 1111233444555554422
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEe-c--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVV-F--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
.++.++..++.+++++.|.++ +.... . ++..+++.+.+.+. ..++.+.|.+
T Consensus 289 -~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~------------------------~~~~~~~l~~ 342 (379)
T TIGR00707 289 -ERLLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEAP------------------------CKDIVKKALE 342 (379)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecCc------------------------HHHHHHHHHH
Confidence 245566777777787777654 22111 1 12345566655431 1467777878
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.|.. +.+. +.+++|++++ ...+++++++++++|+++
T Consensus 343 ~Gv~-v~~~---~~~~lRi~~~-~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 343 KGLL-VNCA---GPKVLRFLPP-LIITKEEIDEAVSALEEA 378 (379)
T ss_pred CCcE-EeeC---CCCEEEEECC-CcCCHHHHHHHHHHHHHh
Confidence 8754 4332 3468999955 568899999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-10 Score=108.73 Aligned_cols=265 Identities=10% Similarity=0.055 Sum_probs=143.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.+|+++++.+.+|+++|++++.... .+.++++...+|++|.+.+ +++|+++|++||++++.|.+++...+.
T Consensus 144 ~v~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~ 219 (433)
T PRK06855 144 PVTYRLDPENNWYPDLDDLENKVKYNP----SIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYN 219 (433)
T ss_pred EEEEecccccCCCCCHHHHHHHHhcCC----CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 778888764456899999999996421 1346677788999999877 567888899999999999998654332
Q ss_pred ChhhhhhhcCCCC-CCeeeeecccccccc-cceEEEEEeCc---hhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 90 CPEFRHFIDGVEG-ADSFSLNAHKWFFTT-LDCCCLWVKDP---SDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 90 ~~~~~~~~~~~~~-~D~~~~~~hK~l~~p-~g~g~l~v~~~---~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.........-... --++..|..|.++.| .-+|++.+.+. ..+...+.....+.... .+
T Consensus 220 ~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~----------------~~- 282 (433)
T PRK06855 220 GKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIE----------------VC- 282 (433)
T ss_pred CCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccc----------------cC-
Confidence 2111111000011 126778999999744 55777776321 11111110000000000 00
Q ss_pred CcchHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEE-EEEEcCCcchhhhhhhhcccc
Q 046506 165 RFRSLKLWFVLRNYG----VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVV-CFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~ 239 (310)
...+...++..++. ...+++..+...++.+.+.+.|.+++++.+. +|..+.. .+.+++. .... ..+....+
T Consensus 283 -~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~w~~l~~~-~~~~-~~~~~~~~ 358 (433)
T PRK06855 283 -STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVN-RTNGAFYMTVVFEDG-VLNN-KQSLPIEN 358 (433)
T ss_pred -CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecc-CCCeeEEEeeccccc-cccc-cccCCcch
Confidence 01122223333332 2346677777788888899999887787654 5555444 3444321 0000 00000000
Q ss_pred chhHHHHHH-------HHHHHHHH-HHhcCcEEEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINE-------FNRELLES-INASGKAYMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 240 ~~~~~~~~~-------~~~~l~~~-l~~~g~~~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
....+.... ...++... +.+.|....++.... ....+|+|+.+ .++++++..++.|++++.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~--~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 359 PEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE--RDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC--CcHHHHHHHHHHHHHHHHHH
Confidence 000000000 01233333 445565455443332 23459999774 57899999999999988764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=106.95 Aligned_cols=254 Identities=14% Similarity=0.110 Sum_probs=143.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc-CCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA-GLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~-~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
+...|.. ++.||.+.++.+.+|++++.+.+.+..+. ..++.+++.+.++|++|.+.+ +++|+++|++||++++
T Consensus 136 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 136 FILAGGN---VHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred HHhcCCE---EEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEE
Confidence 4556776 88998864334689988765554432221 123557777777899999877 5678889999999999
Q ss_pred eecccccccccChhhhhhhcCCCC-CC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEG-AD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~-~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
+|.+++........... ...+.. .| +++.|..|.++.| .-+|+++ .++..+...... ..+....
T Consensus 213 ~De~Y~~l~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv-~~~~li~~~~~~-~~~~~~~--------- 280 (403)
T PRK08636 213 SDIAYADITFDGYKTPS-ILEVEGAKDVAVESYTLSKSYNMAGWRVGFVV-GNKKLVGALKKI-KSWLDYG--------- 280 (403)
T ss_pred EeccchhhccCCCCCCC-hhcCCCccccEEEEEecccccCCccceeeeee-CCHHHHHHHHHH-HHHhccc---------
Confidence 99998654332111111 111111 12 3467899999644 5566664 455443322110 0110000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
.+. .....+..+++ -....++++.+...++.+.+.+.|++. ++.+..+.....+.+.+++..
T Consensus 281 -------~~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~-------- 342 (403)
T PRK08636 281 -------MFT-PIQVAATIALD-GDQSCVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIPEPA-------- 342 (403)
T ss_pred -------CCh-HHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECCCcc--------
Confidence 000 01111111222 123456667777788888888999876 676654445555666654320
Q ss_pred hccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
. ..-..++...+. +.|.....+..+. +.+++|+++. .++++++..++.|+++++.
T Consensus 343 -------~----~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 343 -------R----HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI---ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred -------C----CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 0 000134555544 3454443333222 3579999965 4688889888888887765
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-10 Score=106.93 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
..+.+++.|.+.......+..+++.......|.+.| ++++.++|++||+++++|..|.+.......+.--..++ -
T Consensus 205 ~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv-~ 283 (447)
T COG0160 205 ALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV-E 283 (447)
T ss_pred HHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC-C
Confidence 445567766665544556788888888888898877 88999999999999999999988776554332112233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+++++ |.+++....|.+..+.. .. +.. |.-... + -+|-+..+.+..++|+.+..
T Consensus 284 PDivt~a--K~ig~G~Pl~avv~r~e-i~-~~~---~g~~~~--------------T-f~GNpva~Aaa~AvL~vie~-- 339 (447)
T COG0160 284 PDIVTLA--KSLGGGLPLSAVVGRAE-IM-DWP---PGGHGG--------------T-FGGNPVACAAALAVLDVIEE-- 339 (447)
T ss_pred CCEEEec--ccccCCCceeEEeccHH-hc-ccC---CcccCC--------------C-CCcCHHHHHHHHHHHHHHHH--
Confidence 7888874 88887666777766544 21 211 110000 1 11212233444455554433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecCCCc--eEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFPRHF--AVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+.+.++..++-++++++|.++ ..+..++..+. -.+.+-+....- +..+ -..+...+..++.+
T Consensus 340 -e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~-----------t~~p---~~~~~~~i~~~~~~ 404 (447)
T COG0160 340 -ENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRD-----------TKEP---DAELAAKIVARAFE 404 (447)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCC-----------CCCC---CHHHHHHHHHHHHH
Confidence 367777888888888888764 34445554431 223333331100 0000 03556788889999
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|.+..... ...++|||.+. .-.++|++|.+++.|.+.+.+.
T Consensus 405 ~Glil~~~G--~~~nviRi~PP-L~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 405 RGLLLLTCG--PHGNVLRILPP-LTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred cCCEEeccC--CCCcEEEEeCC-cccCHHHHHHHHHHHHHHHHhh
Confidence 997554432 13678999966 5689999999999999888653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-11 Score=119.30 Aligned_cols=210 Identities=16% Similarity=0.140 Sum_probs=134.4
Q ss_pred EEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccc-----cceE
Q 046506 47 FLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-----LDCC 121 (310)
Q Consensus 47 ~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-----~g~g 121 (310)
..++...++..|.+.++++|++++|++|++++|+.-..+..+.-+- .. -++|+++ +.||.|+.| .+.|
T Consensus 196 ~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~P-----ge-~GaDi~v-g~~q~fg~p~g~GGP~aG 268 (939)
T TIGR00461 196 FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPP-----GH-YGADIVL-GSSQRFGVPMGYGGPHAA 268 (939)
T ss_pred EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCH-----HH-cCCcEEe-eCCCccCCCCCCCCCcee
Confidence 3555566677899999999999999999999996544333332221 11 2699994 445545543 2377
Q ss_pred EEEEeCchhHHhhhccCCccccccccccccccCCCCceecc----CCC--cc-------h-HHH--HHHHHHhCHHHHHH
Q 046506 122 CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL----SRR--FR-------S-LKL--WFVLRNYGVANLRH 185 (310)
Q Consensus 122 ~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~----~~~--~~-------~-~~~--~~~l~~~~~~~~~~ 185 (310)
++.+++. +.+.+ |+.+-+...+..+-+.++. ++|. -|| +. + +++ +..+..+|.+|+.+
T Consensus 269 ~~a~~~~--l~r~l---PgrivG~s~D~~G~~~~~l-~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~ 342 (939)
T TIGR00461 269 FFAVKDE--YNRKM---PGRIVGVSKDALGNTALRL-ALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKN 342 (939)
T ss_pred eeeecHh--hHhhC---CCCceeEEecCCCCcccee-ecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 8888765 23333 3333332221111111111 1111 122 11 1 122 22356689999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEE
Q 046506 186 FLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYM 265 (310)
Q Consensus 186 ~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 265 (310)
+.++...++.++.+.|.+ .|+++..++-++.+.+.+...+ .+++.+++.++|.. +
T Consensus 343 iA~~~~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~-----------------------~~~i~~~~~~~gi~-l 397 (939)
T TIGR00461 343 IARRIHSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGI-----------------------SSELLKAAEEFNIN-L 397 (939)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCC-----------------------HHHHHHHHHHCCCe-e
Confidence 999999999999999998 6999988776778888774211 14677778788764 2
Q ss_pred EEeEECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 266 THAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 266 ~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.. ...+.+++|++- .+|++||+.|++++.
T Consensus 398 ~~---~~~~~i~~s~~E-~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 398 RA---VDTTTVGIALDE-TTTKADVENLLKVFD 426 (939)
T ss_pred ee---cCCCEEEEEeec-CCCHHHHHHHHHHhc
Confidence 22 223579999774 799999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=114.45 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCc--cc--ccCChHHHHHHHHHhCcEEEeec
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTA--IT--AVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~--~G--~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
.|+. +++++.+ + ..++++++++|+++| .+|+.++.+|. .| .+.|+++|+++||+||++++||+
T Consensus 186 ~G~~---~~~v~~~--~--~~~l~dle~aI~~~T------~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 186 SGAK---LVEVGTT--N--RTHLKDYEDAITENT------ALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred cCCE---EEEeCCC--C--CCCHHHHHHhcCcCC------EEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEEC
Confidence 4555 7777664 2 468999999998764 36677777664 56 47899999999999999999998
Q ss_pred cccccc------ccC-hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCc
Q 046506 82 AYAGSA------CIC-PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDP 128 (310)
Q Consensus 82 a~~~~~------~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~ 128 (310)
+.|... ++. +...... -.++|++++|+|||+++|. +|+++.+++
T Consensus 253 ~sG~l~~~~~~gl~~~p~~~~~~--~~GaDiv~fSg~K~LgGp~-~G~i~g~~~ 303 (454)
T TIGR00474 253 GSGSLVDLSRYGLPDEPTVQEVI--AAGVDLVTFSGDKLLGGPQ-AGIIVGKKE 303 (454)
T ss_pred CCcccccchhccCCCCcccccHh--HcCCCEEEecCccccCCCe-EEEEEECHH
Confidence 643310 000 0000001 1369999999999999994 787877644
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=110.35 Aligned_cols=233 Identities=12% Similarity=0.015 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHcCC-------CcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--
Q 046506 27 SPDSLMAKINSDVEAGL-------IPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI-- 97 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~-------~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~-- 97 (310)
|+++||+.|++....+. +..+||.....++-|++.++.++.+++++|.+.+++|+||+.++..-. .++.+
T Consensus 252 dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~t-Grgvce~ 330 (519)
T KOG1357|consen 252 DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGAT-GRGVCEY 330 (519)
T ss_pred CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCC-Ccceeec
Confidence 56899999988665431 235677788889999999999999999999999999999988876321 11111
Q ss_pred --cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc-chHHHHHH
Q 046506 98 --DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF-RSLKLWFV 174 (310)
Q Consensus 98 --~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 174 (310)
.+-+.+|.+.....|.|++ +|.....++.++ +.....+++... ..+.++ -+-....+
T Consensus 331 ~g~d~~dvDImMGtftKSfga---~GGyiagsk~li-d~lrt~s~~~~y----------------at~~sppvaqq~~ss 390 (519)
T KOG1357|consen 331 FGVDPEDVDIMMGTFTKSFGA---AGGYIAGSKELI-DYLRTPSPSALY----------------ATSLSPPVAQQILTS 390 (519)
T ss_pred cCCCchhheeecceehhhccc---ccceecCcHHHH-hhhccCCCceee----------------cccCChHHHHHHHHH
Confidence 0113589999999998874 455555555444 332222111111 111111 11122233
Q ss_pred HHHh----CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 175 LRNY----GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 175 l~~~----~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
++.+ +.+.-++..+++.+++.+++..|... +|.+++....+++.+-+-++.. .
T Consensus 391 l~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~k----------------------~ 447 (519)
T KOG1357|consen 391 VKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPAK----------------------I 447 (519)
T ss_pred HHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCccc----------------------c
Confidence 3332 34567889999999999999999976 9999987666666544444321 1
Q ss_pred HHHHHHHHhcCcEEEEEeE---ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHAV---LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~~---~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++...|.+.+...+.... +--..+.|++.+ .+++.|+++++++++.......
T Consensus 448 ~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~S-a~ht~e~ld~~l~~i~~~g~~~ 503 (519)
T KOG1357|consen 448 VAFSREMLERNIGVVVVGFPATPLLESRARFCLS-ASHTKEDLDRALEVIDRVGDED 503 (519)
T ss_pred cHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhc-ccccHHHHHHHHHHHhhhchhh
Confidence 2455556565543333222 222567899956 5789999999999999887543
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-11 Score=108.76 Aligned_cols=229 Identities=10% Similarity=0.048 Sum_probs=140.9
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEe
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHV 79 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~v 79 (310)
+++..|+. ++.+|.++ ++.+|++++++. .+. +.++++.+++|++|.+.+.++|.++++. +|+++++
T Consensus 135 ~~~~~g~~---~~~v~~~~--~~~~d~~~l~~~-~~~------~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIv 202 (370)
T PRK09105 135 AADAQGAP---VAKVPLRA--DGAHDVKAMLAA-DPN------AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLV 202 (370)
T ss_pred HHHHcCCe---EEEecCCC--CCCCCHHHHHhc-CCC------CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEE
Confidence 34567877 89999876 357999999876 222 3377788899999999998888887754 4899999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeee-eecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFS-LNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~-~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
|.++..+.. .+....... .+.++++ .|..|+++.| .-+|+++. ++..+....... ...
T Consensus 203 DEaY~~f~~-~~s~~~~~~--~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~~i~~l~~~~-----~~~----------- 262 (370)
T PRK09105 203 DEAYIHFSD-APSVVDLVA--QRKDLIVLRTFSKLYGMAGMRLGLAAA-RPDLLAKLARFG-----HNP----------- 262 (370)
T ss_pred ECchHHhcc-CcchHHHHh--hCCCEEEEecccHhhcCCccceeeeec-CHHHHHHHHhcC-----CCC-----------
Confidence 999853221 111111111 1245555 5778988644 23777765 444443321110 000
Q ss_pred ceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.......++...+. .+.+++..++..++.+.+.+.|.+. ++.+. ++..+.+.+.+...
T Consensus 263 --------~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~~~----------- 321 (370)
T PRK09105 263 --------LPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVKRP----------- 321 (370)
T ss_pred --------cCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCCCC-----------
Confidence 01122223333332 3456777788888889999999886 77765 45666554443211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.++|.. +........+++|+++. +++++++++++|+++.
T Consensus 322 -------------~~~l~~~L~~~gI~-v~~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 322 -------------AKAVADAMAKQGVF-IGRSWPIWPNWVRVTVG----SEEEMAAFRSAFAKVM 368 (370)
T ss_pred -------------HHHHHHHHHHCCcE-EecCCCCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 13567777777654 32111123579999944 4788999999998765
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=109.68 Aligned_cols=210 Identities=13% Similarity=0.010 Sum_probs=143.6
Q ss_pred EEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEE
Q 046506 46 LFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWV 125 (310)
Q Consensus 46 ~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v 125 (310)
..|.++++.|.+|+..| ++.+.++++++||++.+.+..+++.. ..|.+..+..|.++ |.|.+++++
T Consensus 145 ~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~--------~~dvi~agsQKnlg-P~Gltvviv 210 (364)
T PRK12462 145 PFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVE--------AYGMVYAHAQKNLG-PAGVTVAII 210 (364)
T ss_pred cEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChH--------HccEEEeeccccCC-CCceEEEEE
Confidence 47999999999999886 44445799999999988877766532 25999999999998 889999999
Q ss_pred eCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cchHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHH
Q 046506 126 KDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FRSLKLWFVLRNYGVA--NLRHFLRSHVNMAKLFERLV 201 (310)
Q Consensus 126 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~~l~~~L 201 (310)
+++. +.+.-...|.|+..... .+ ....+ .++ +....+-.+++.+..+ |++++.++..+.++.+++.|
T Consensus 211 s~~a-l~~~~~~~p~~ldy~~~-----~~-~~s~~--nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~i 281 (364)
T PRK12462 211 RRAL-LERVPDTLPPMLDFRTH-----VE-HRSNY--NTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATL 281 (364)
T ss_pred CHHH-HhhccccCCchhhHHHH-----Hh-cCCCC--CCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 8774 33322212222221100 00 00000 122 2334555666666666 99999999999999999999
Q ss_pred cCCCCeEEec-C---CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 202 GSDKRFEVVF-P---RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 202 ~~~~~~~v~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
.+.+++.... . +....++|++.. ..+...+.+...+.|...+.+. +..+.+|
T Consensus 282 d~~~~~~~~~~~~~~RS~mnv~f~~~~----------------------~~l~~~f~~~a~~~gl~~lkGh--r~vgg~R 337 (364)
T PRK12462 282 DALNEVIDCHAHRAARSTMNVAFRFRQ----------------------PRLDTLFKEQSTEAGFCGLSGH--RSIGGIR 337 (364)
T ss_pred HhCCCcccCCCChhhcCcceEEEEcCC----------------------HHHHHHHHHHHHHCCCccccCC--cccCceE
Confidence 9987675432 1 124467787665 3445667777778886554432 2245699
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+|+-+ ..+.|+|+.|++-+++..++
T Consensus 338 as~yn-a~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 338 ASLYN-AVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EEcCC-CCCHHHHHHHHHHHHHHHHh
Confidence 99776 58899999999999887653
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-11 Score=108.78 Aligned_cols=213 Identities=11% Similarity=0.061 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.+.+. +..+++....++.|...+ +++|.++|++||+++++|.+|.+.............++ .
T Consensus 156 d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~-~ 228 (377)
T PRK02936 156 DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGL-D 228 (377)
T ss_pred CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCC-C
Confidence 689999988643 347777777777776533 99999999999999999999964332221111001122 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|.+ +..|.+++..-.|++.. +++. .+.+... ... .++ ++-+....++.++++.+.
T Consensus 229 ~di~--t~sK~l~~G~~ig~v~~-~~~~-~~~~~~~--~~~--------------~t~-~~~~~~~aaa~a~l~~~~--- 284 (377)
T PRK02936 229 PDIV--TVAKGLGNGIPVGAMIG-KKEL-GTAFGPG--SHG--------------STF-GGNPLAMAAAKEVLQVIK--- 284 (377)
T ss_pred CcEE--EEcccccCCCccEEEEE-cHHH-HhhccCC--CCC--------------CCC-CCCHHHHHHHHHHHHHHH---
Confidence 4654 57899884333666654 3433 2332110 000 001 111123334444444331
Q ss_pred HHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
.++.+++..++.+++++.|.+ ++.+..+. ....++.+.+... ...+.+.+.
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~------------------------~~~~~~~l~ 339 (377)
T PRK02936 285 QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIR-GKGLMIGIECTEE------------------------VAPVIEQLR 339 (377)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe-ecceEEEEEecch------------------------HHHHHHHHH
Confidence 234456666666777776654 33322221 2334555555331 245667777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
++|.+.. + .+.+++|++++ ...++++++++++.|++.
T Consensus 340 ~~gv~v~-~---~g~~~lRi~p~-~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 340 EEGLLVL-S---AGPNVIRLLPP-LVVTKEELDQAVYLLKKV 376 (377)
T ss_pred HCCeEEe-c---CCCCEEEEECC-cccCHHHHHHHHHHHHHh
Confidence 7875443 2 24578999955 568899999999999764
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=106.27 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=119.7
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHH-HHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINS-DVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~-~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
+|++ +.+++.. +.+.+++++.+ + +.+|.+.+++|++-.+.||++|+++||++|+.++||.+++
T Consensus 126 ~gi~---~~~~d~~-------~~~~~~~~~~~~~------tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 126 FGVE---VTFVDPG-------DDEALEAAIKEPN------TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred cCeE---EEEECCC-------ChHHHHHHhcccC------ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 4555 5555543 23567777764 4 4589999999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccce-EEEEEeCchhHHhhh-ccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC-CCLWVKDPSDLVNSL-STNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-g~l~v~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+.+.-+. . .++|+++-|+.|.+++-..+ |.+.+.+.+.+.+.+ .....+++.
T Consensus 190 tP~~q~PL----~---~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~------------------ 244 (396)
T COG0626 190 TPVLQRPL----E---LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA------------------ 244 (396)
T ss_pred cccccChh----h---cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC------------------
Confidence 77653332 1 25999999999999984322 223443333332322 110011111
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
-......|..++ |...+.-+++++.++|+.+.+.|.+.|.++-+.-| ..++++|.+.+
T Consensus 245 --~l~p~dA~l~lR--GlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 245 --VLSPFDAWLLLR--GLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred --CCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 123344566654 67889999999999999999999999999643222 35689998887
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-10 Score=100.12 Aligned_cols=254 Identities=15% Similarity=0.131 Sum_probs=162.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|++ +++|.++...+.+++.++||+++.+..+.+.+...++++.++|+.|+..+ +..+.+.|.++|+.|++|
T Consensus 189 ~rTgve---ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 189 WRTGVE---IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred eccCce---EEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEee
Confidence 456787 99999998767899999999999999888888889999999999999766 666777888999999999
Q ss_pred cccccccccChhhhhhhcC---CC-CCCe--eeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 81 AAYAGSACICPEFRHFIDG---VE-GADS--FSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~---~~-~~D~--~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
..+++......++....+- .. ..|. ++.+..|=|+.| .-.|++|..++... .+......|-.-.+
T Consensus 266 EIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~Vv-saA~kmssf~~vSs------- 337 (471)
T KOG0256|consen 266 EIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVV-SAATKMSSFGLVSS------- 337 (471)
T ss_pred hhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHH-HHHHHHhhccCCcH-------
Confidence 9997776554443322111 11 2233 567889999887 45678888777543 33222111211110
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcch
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGVAN-----LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVM 228 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~ 228 (310)
..-....+.+..++ +.+...|+...-+++-++|+++ ||..+ +...++++|.=-...
T Consensus 338 ---------------~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl-~s~AGlF~wvDlr~l-- 398 (471)
T KOG0256|consen 338 ---------------QTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCL-KSNAGLFCWVDLRKL-- 398 (471)
T ss_pred ---------------HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCcee-ecCCeeEEEEEhHHh--
Confidence 00111112222222 2344456666678889999987 88877 445566554322211
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE---CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL---GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
|+ +.. .+-..++.+++..+-++.++|+.. ...+|+|+++.+ ..++.++..++.|++++.
T Consensus 399 --L~---------s~t--fe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn--~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 399 --LT---------SLT--FEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFAN--MSEETLEVAMRRLKQFLD 460 (471)
T ss_pred --cC---------cCC--hHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEecc--CCHHHHHHHHHHHHHHHH
Confidence 00 000 111135666666664455555432 346899999774 677777778888888775
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-10 Score=107.28 Aligned_cols=218 Identities=14% Similarity=0.076 Sum_probs=121.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc----CChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV----DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~----~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++++++|++. +.+|+++...+++|.. +++++|+++|++||+++++|++|.+.............++
T Consensus 163 ~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~- 235 (389)
T PRK01278 163 GDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGV- 235 (389)
T ss_pred CCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCC-
Confidence 5899999998643 4577777777777743 3699999999999999999999975432221110001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|.+ +..|.+++..-.|+++.+++ .. +.+... . .. .++ ++-+..+.++.++++.+..+
T Consensus 236 ~pdi~--t~sK~l~~G~~ig~~~~~~~-~~-~~~~~~-~----~~-----------~t~-~~~~~~~aaa~a~l~~l~~~ 294 (389)
T PRK01278 236 TPDIM--AVAKGIGGGFPLGACLATEE-AA-KGMTPG-T----HG-----------STY-GGNPLAMAVGNAVLDVILAP 294 (389)
T ss_pred CCCEE--EEehhccCCcceEEEEEcHH-HH-hccCCC-C----CC-----------CCC-CccHHHHHHHHHHHHHHhhh
Confidence 25654 56798874344777765543 32 222110 0 00 001 11112333444455544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+ ..++..++.++++++|.+ .+++.....+...++.+.+... ..++...|
T Consensus 295 ~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~~------------------------~~~~~~~l 347 (389)
T PRK01278 295 G---FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVP------------------------NRDLVQAL 347 (389)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEecC------------------------HHHHHHHH
Confidence 2 334444555555555543 3322111112223333333221 13567777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.++|.+ +.+. +.+.+||+++ ...++++++.+++.|++.+.+
T Consensus 348 ~~~GV~-~~p~---~~~~lR~~p~-~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 348 RDEGLL-TVGA---GDNVVRLLPP-LIITEEEIDEALERLERAAES 388 (389)
T ss_pred HHCCeE-Eeec---CCCEEEEeCC-cccCHHHHHHHHHHHHHHHHh
Confidence 778754 3332 4578999965 457899999999999887754
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-10 Score=105.18 Aligned_cols=228 Identities=12% Similarity=0.064 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.|.+..........|++.-...+.|.+. .+++|.++|++||+++++|.+|++.......+.....++ .
T Consensus 181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v-~ 259 (425)
T PRK09264 181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI-T 259 (425)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC-C
Confidence 67888998865421111245677776667777643 499999999999999999999975433222211111223 3
Q ss_pred CCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.++. ...+|++++++. +. .+. +..... ++. +-+...++..++++.+ .
T Consensus 260 PDi~t~--~K~l~~~G~pigav~~~~~--i~-~~~--~~~~~~--------------T~~-gnp~~~aaa~a~l~~~--~ 315 (425)
T PRK09264 260 PDIVTL--SKSISGYGLPMALVLIKPE--LD-VWK--PGEHNG--------------TFR-GNNLAFVTATAALEEY--W 315 (425)
T ss_pred CCEEEe--ccccCCCccceEEEEEchh--hh-ccC--CCccCC--------------CCC-CCHHHHHHHHHHHHHH--H
Confidence 787766 498875 344677877644 22 211 100000 111 1111222333444211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CCeEEecCC-CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KRFEVVFPR-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
.-++..++..++.+++++.|.++ |.+ +...+ ...++.+.+.+ ......+.+.
T Consensus 316 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~~~vrg~Gl~~~i~l~~----------------------~~~~~~l~~~ 372 (425)
T PRK09264 316 SDDAFEKEVKAKGELVRERLEEIAAKYPGL-GAEVRGRGMMQGIDFGD----------------------GELAGKIAAE 372 (425)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCc-eecceecccEEEEEecC----------------------hHHHHHHHHH
Confidence 12245666667777777776543 222 11112 23344555543 2233567777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+.+.|.+.. +.. .+..+||++++ ...|++||+.+++.|.+.+..+.
T Consensus 373 ~~~~Gv~~~-~~~-~~~~~lr~~p~-l~~t~~ei~~~~~~l~~~l~~~~ 418 (425)
T PRK09264 373 AFENGLIIE-TSG-PEDEVVKLLPP-LTIDEEELEEGLDILEEAVAEVL 418 (425)
T ss_pred HHHCCCEEe-ccC-CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888886543 221 12368999954 67899999999999999987764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-10 Score=103.15 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++++++|+++| ..|++.-..-+.|.+.| ++++.++|++||++|++|..|.+.......+..-..++ .
T Consensus 173 Di~al~~ai~~~t------aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV-~ 245 (404)
T COG4992 173 DIEALEAAIDEDT------AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGV-E 245 (404)
T ss_pred CHHHHHHHhccCe------EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCC-C
Confidence 6799999999854 47888777778887755 88999999999999999999977765554433222333 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+++. -|.+++.+..|.++.+ +.. ...+ .|.--.+ + -+|-+..+....++++.+..
T Consensus 246 PDI~tl--aK~LgGG~PigA~la~-~~~-~~~~--~~G~HgS--------------T-fGGNpLacAv~~a~l~~l~~-- 302 (404)
T COG4992 246 PDILTL--AKALGGGFPIGAMLAT-EEI-ASAF--TPGDHGS--------------T-FGGNPLACAVALAVLEVLLE-- 302 (404)
T ss_pred CCEEEe--eccccCCccceeeEEc-hhh-hhcC--CCCcccC--------------C-CCcCHHHHHHHHHHHHHHcc--
Confidence 787776 5888887788888877 322 1221 1111110 1 11111122333344444433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecCCC--ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFPRH--FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+.+.++..+..++|.+.|.++ ..+.++...+ .-++.+.+.+.. ...++...+.+
T Consensus 303 -e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~----------------------~a~~~~~~~~~ 359 (404)
T COG4992 303 -EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY----------------------RARDIVRALRE 359 (404)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc----------------------cHHHHHHHHHH
Confidence 455666667778888888764 2333333322 334555555420 12467777888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+|.+... + +..++||.+. .-.++||++..++++++.+..+..
T Consensus 360 ~gvL~~~-a---~~~ViR~~Pp-L~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 360 EGVLVLP-A---GPNVIRFLPP-LVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred CCeEEec-C---CCCeEEecCC-ccCCHHHHHHHHHHHHHHHHHhhh
Confidence 8854332 2 3559999966 679999999999999999987644
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-11 Score=114.50 Aligned_cols=258 Identities=12% Similarity=0.156 Sum_probs=148.0
Q ss_pred ecCCCCCCEEEEecCCCCC---cccC-----HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcE
Q 046506 5 IVGIDVKNFRAIKTTKSSS---YGLS-----PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIW 76 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~---~~id-----~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~ 76 (310)
+.|.. .+++++.-+.- +.++ ++.++++|.+.... ..|+.++++ .+|..|.+-++++|+++|+.++
T Consensus 254 lsga~---PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit-~pTYdG~~yd~~~I~~~~~~~~-- 326 (714)
T PRK15400 254 MSDVT---PIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVIT-NSTYDGLLYNTDFIKKTLDVKS-- 326 (714)
T ss_pred HcCCe---EEEecccccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEE-CCCCccEecCHHHHHHHhCCCC--
Confidence 45555 77777654321 1235 89999999876432 235555555 4577899999999999999998
Q ss_pred EEeecccccccccChhhhhhhcCC-CCC---C--eeeeecccccccccceEEEEEeCc---hhHHhhh----ccCCcccc
Q 046506 77 VHVDAAYAGSACICPEFRHFIDGV-EGA---D--SFSLNAHKWFFTTLDCCCLWVKDP---SDLVNSL----STNPEYLK 143 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~~~~~-~~~---D--~~~~~~hK~l~~p~g~g~l~v~~~---~~~~~~~----~~~~~y~~ 143 (310)
+|||.||++...+.+.+++. ..+ .++ | +++-|.||++.+..++++++++.. +.+.+++ +.+|.|.-
T Consensus 327 ilvDEAwgah~~F~p~~~~~-sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l 405 (714)
T PRK15400 327 IHFDSAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGI 405 (714)
T ss_pred EEEEccchhhhccCcccCCc-ChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHH
Confidence 79999998887666654321 112 245 5 899999999999999999988653 1122221 12222211
Q ss_pred ccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecCCCc-e
Q 046506 144 NKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR------FEVVFPRHF-A 216 (310)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~------~~v~~~~~~-~ 216 (310)
.+++-.+.+.+....-++.+++..+.+..+++.|.++++ +.++.+... .
T Consensus 406 ------------------------~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~ 461 (714)
T PRK15400 406 ------------------------VASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDT 461 (714)
T ss_pred ------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhccc
Confidence 112222222332223456778888899999999988877 777642210 0
Q ss_pred EEEEE-------------------EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 217 VVCFR-------------------VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 217 ~v~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
.-+|. +.|..++..+.+....+ ...+..--...+.+.|.+.|+ .+..+ +...+=
T Consensus 462 ~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g---~~~~~Gipg~~v~~~L~e~gI-~~E~~---d~~~iL 534 (714)
T PRK15400 462 TECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDG---TMSDFGIPASIVAKYLDEHGI-VVEKT---GPYNLL 534 (714)
T ss_pred chhcccCccccccCcccccccccccCCceEEEEeCCCCCCc---cccccCCCHHHHHHHHHHcCC-EEEec---CCCeEE
Confidence 00111 12211111110000000 000000112355666766653 44333 222333
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+- .++.+|+++++.|+++|.++-+
T Consensus 535 fl-~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 535 FL-FSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred EE-eCCCCCHHHHHHHHHHHHHHHH
Confidence 44 3478999999999999998744
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-10 Score=104.93 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++.+.++ +.+|++.-.+++.|...| +++|.++|++||+++++|.+|++.............++ .
T Consensus 173 d~~~l~~~l~~~------~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~ 245 (403)
T PRK05093 173 DLAAVKAVIDDH------TCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGV-T 245 (403)
T ss_pred CHHHHHHHhcCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-C
Confidence 678999888643 446666655565565544 99999999999999999999975422221110001122 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|.+ +..|.+++..-.|+++.++. .. +.+... .... ++ ++-+....++.++++.+..
T Consensus 246 pdi~--s~sK~l~~G~rig~vv~~~~-i~-~~l~~~--~~~~--------------t~-~~~~~~~~aa~a~L~~~~~-- 302 (403)
T PRK05093 246 PDIL--TSAKALGGGFPIGAMLTTAE-IA-SHFKVG--THGS--------------TY-GGNPLACAVAEAVFDIINT-- 302 (403)
T ss_pred CCEE--EecccccCCcceEEEEEcHH-HH-hhcCCC--CCCC--------------CC-CCCHHHHHHHHHHHHHHhh--
Confidence 5654 45799874344777766543 32 222110 0000 11 1112233344455544422
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC-CeEEec-CCC-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDK-RFEVVF-PRH-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
.+..++..++.+++.+.|.++. .+.+.. .+. ...+.+.+.+.. .....++...+.+
T Consensus 303 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~--------------------~~~~~~~~~~l~~ 361 (403)
T PRK05093 303 -PEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY--------------------KGRARDFLNAAAE 361 (403)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc--------------------hhHHHHHHHHHHH
Confidence 3445667777788888887641 121211 222 333444443310 1123467777878
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|.+ +.+ .+.+.+|++++ ...++++++.+++.|.+.+..+
T Consensus 362 ~Gv~-v~~---~g~~~lRl~~~-~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 362 EGVM-VLV---AGPDVLRFAPS-LVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CCeE-Eec---CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 8754 433 24578999955 5568999999999999987654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-11 Score=109.02 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=119.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
|...|++ ++.+|+++++ ..| .+. ...|++ ..+|..|.++++++|++++|++|+.+++ ++
T Consensus 175 a~~~g~~---iv~~~~~~~~--~~d--------~~~------~a~v~v-q~Pn~~G~~ed~~~i~~~~h~~gal~~~-~a 233 (429)
T PF02347_consen 175 AAPLGIE---IVEVPLDEDG--TTD--------DDD------TAAVMV-QNPNTFGVFEDIKEIADIAHAAGALVIV-GA 233 (429)
T ss_dssp CCHCCEE---EEEE-BBTTC--SB---------STT------EEEEEE-ESS-TTSB--THHHHHHHHHHTT-EEEE-CG
T ss_pred hhhCCeE---EEEecccccC--Ccc--------ccC------eEEEEe-ecCCCCceEeeHHHHHHHHHHcCCEEEE-ec
Confidence 3456777 8899988654 555 121 334555 4555689999999999999999999988 76
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeeccccccccc-----ceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL-----DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-----g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
--..........+ -++|++ ++-||.|+.|. +.|++.+++. . .+.+ |..+-+...+..+...++
T Consensus 234 d~~aL~~l~~Pge-----~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~-l-~r~l---PGRiVG~t~D~~G~~~~~- 301 (429)
T PF02347_consen 234 DPNALGGLKSPGE-----YGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED-L-VRQL---PGRIVGQTKDADGKRAFV- 301 (429)
T ss_dssp GCCGCCTC--GGG-----GT-SEE-EECCTTTT---CCC-S--EEEEE-GG-G-GGGS----S-EEEEEEBCCCSCCEE-
T ss_pred CHHHHhCcCChhh-----cCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh-h-hhhC---CCceecccccccccceee-
Confidence 4322222211111 169999 66699998764 4556766655 2 2332 444443322212211110
Q ss_pred ceecc----CCC--c----------chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEE
Q 046506 158 WQITL----SRR--F----------RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR 221 (310)
Q Consensus 158 ~~~~~----~~~--~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~ 221 (310)
.++|. -|| + .++..+..+..+|.+|+.+..+++..++.|++++|.++.++.+..++-...+..
T Consensus 302 ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~- 380 (429)
T PF02347_consen 302 LTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVV- 380 (429)
T ss_dssp EE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEE-
T ss_pred eccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeee-
Confidence 01111 022 1 123445566678999999999999999999999999874444332222333322
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
..+. ... .++.++....| +.... ...+.+-+|++- -+|+||||++++++
T Consensus 381 ~~~~---------------------~~~-~~l~~~~~~~g---l~~~~-~~~~~~li~~TE-~~t~edid~lv~~f 429 (429)
T PF02347_consen 381 FSKD---------------------KEV-EELLKRGIEGG---LNLRY-PDDGALLICVTE-TRTKEDIDRLVEAF 429 (429)
T ss_dssp ESS----------------------HHH-HHHHHTT-------EEEGG-G-SSEEEEE--T-T--HHHHHHHHH--
T ss_pred cCCc---------------------HHH-HHHHHHHHhcC---CCccc-cCCCeEEEEccC-CCCHHHHHHHHhcC
Confidence 2221 111 12444433344 11111 123377899885 58899999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=106.53 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=140.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh---HHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL---KPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl---~~I~~l~~~~g~~l~v 79 (310)
++.+|+. ++.+|.++++. .++++++++..... .+.+++++.++|++|.+.+. ++|+++|++||+++++
T Consensus 133 ~~~~g~~---v~~v~~~~~~~---~~~~l~~~~~~~~~---~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 133 FIMAGGV---IRSVPAEPDEE---FFPALERAVRHSIP---KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred HHhcCCE---EEEEeCCCCCC---CccCHHHHHhhccc---cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 3456776 88999876432 34556666643211 24578888889999999886 6788999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++............ ........++..|..|.++.| .-+|+++ .++..+...... ..+.....
T Consensus 204 De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v-~~~~~i~~l~~~-~~~~~~~~---------- 271 (405)
T PRK09148 204 DLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV-GNERLIAALTRV-KSYLDYGA---------- 271 (405)
T ss_pred eccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeee-CCHHHHHHHHHH-HHHhccCC----------
Confidence 99997543321111000 011111234578999998755 3367775 455444322111 01111000
Q ss_pred CceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
..+...++...+ ....+++..++..+..+.+.+.|.+. ++.+..+.....+.+.+++..
T Consensus 272 ----------~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~-------- 332 (405)
T PRK09148 272 ----------FTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIPEAF-------- 332 (405)
T ss_pred ----------ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECCCcc--------
Confidence 111111222222 23455666777788888899999875 666543333444445443310
Q ss_pred hccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 235 YENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. ..-..++...+. +.|.....+..+. +.+++|+++. .+++.+...++.|.+++....
T Consensus 333 -------~----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~---~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 333 -------R----HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV---ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred -------C----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHHH
Confidence 0 000134555555 4565444333222 2578999964 357888888888888776654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-10 Score=106.97 Aligned_cols=239 Identities=12% Similarity=-0.005 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
++|+++|.+.. ...+..|++.-...+.|.+.| +++|.++|++||+++++|.++.++......+.-...++ ..|
T Consensus 247 ~~le~~l~~~~--~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv-~PD 323 (504)
T PLN02760 247 DNLENLILKEG--PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI-KPD 323 (504)
T ss_pred HHHHHHHHhcC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC-CCc
Confidence 56777775321 123556777767777898888 99999999999999999999965544443322112233 278
Q ss_pred eeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 105 SFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 105 ~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++++ .|.+++.+ ..|.+.++++ .. +.+....+...... ...++. +-+..+.+..++++.+..
T Consensus 324 ivtl--gK~lggG~~PigAv~~~~~-i~-d~~~~~~~~~~~~~---------h~~T~~-gnPl~~Aaala~Le~i~~--- 386 (504)
T PLN02760 324 LVSL--AKALSSAYMPIGAVLVSPE-IS-DVIHSQSNKLGSFA---------HGFTYS-GHPVSCAVALEALKIYKE--- 386 (504)
T ss_pred EEEe--cccccCCccccceEeecHH-HH-hhhhcccccccCcc---------cCCCCC-CCHHHHHHHHHHHHHHHh---
Confidence 7555 79887632 3566666533 32 33211100000000 000111 112233444455554433
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
++..++..++.++|++.|+++....++... ...++.+.+..... ...+.. .-..+...+.+.+.++|
T Consensus 387 ~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~---------~~~~~~--~~~~~~~~i~~~~~~~G 455 (504)
T PLN02760 387 RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKS---------PNDPFP--AEWGVGAYFGAECKKRG 455 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCc---------cccccc--chhHHHHHHHHHHHhCC
Confidence 356778888888888888765333222211 12344555533110 000000 00123456777788888
Q ss_pred cEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+... . ...+|++++ ...|++|||.+++++.+.+..+
T Consensus 456 vl~~~-~----g~~lrl~Pp-l~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 456 MLVRV-A----GDNIMMSPP-LIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred cEEEe-c----CCEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 64432 1 246899955 6799999999999999888765
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-10 Score=103.02 Aligned_cols=226 Identities=8% Similarity=0.041 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|.+++++.|.+....+.....+++.....+.|.+.| ++++.++|++||+++++|.+|.+.......+.-...++ .
T Consensus 207 d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~ 285 (442)
T TIGR03372 207 DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV-Q 285 (442)
T ss_pred CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC-C
Confidence 467788888653222233567777777788898888 99999999999999999999965433332211111233 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|+++ ..|.+++. ...|.+..+++ .. +.+... ++.... + -++-+..+++..++++.+..+
T Consensus 286 PDivt--~gK~lg~G~~Pigavv~~~~-i~-~~~~~~-~~~~~~-------------T-~~gnp~~~Aaa~a~L~~i~~~ 346 (442)
T TIGR03372 286 PDILC--LAKALGGGVMPIGATIATEA-VF-SVLFDN-PFLHTT-------------T-FGGNPLACAAALATINELLEK 346 (442)
T ss_pred CCeee--ehhhhcCCcccceEEEecHH-HH-Hhhhcc-CccccC-------------C-CCCCHHHHHHHHHHHHHHHhc
Confidence 78776 57988754 24666666533 32 332111 111110 0 111122334444555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CeE-EecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDK-RFE-VVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~-~~~-v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+..++..++.+++++.|+++. .+. .+.. -...++.+.+... .....+.+.+
T Consensus 347 ---~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~----------------------~~~~~i~~~l 401 (442)
T TIGR03372 347 ---NLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN----------------------EIGYAFAKEL 401 (442)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh----------------------HHHHHHHHHH
Confidence 345566677777777776531 111 1111 1234455555431 2234677788
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.++|.+. .+.. .+..++||+++ ...|++|+|++++++.+.
T Consensus 402 ~~~Gvl~-~~~~-~~~~~lr~~Pp-l~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 402 FQQNILV-AGTL-NNAKSIRIEPP-LTITIEQCALVIKAAKDA 441 (442)
T ss_pred HHCCcEE-eecC-CCCCEEEEECC-cccCHHHHHHHHHHHHHh
Confidence 8888543 3221 12468999966 679999999999999874
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-10 Score=106.06 Aligned_cols=234 Identities=13% Similarity=0.130 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
.++||++|.... ......|++.....+.|.+.| +++|.++|++||+++++|.+|.+.............++ ..
T Consensus 201 ~~~le~~l~~~~--~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~P 277 (442)
T PRK13360 201 ADELERLVTLHD--ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TP 277 (442)
T ss_pred HHHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CC
Confidence 567888885321 123557777777888899988 99999999999999999999954433232211111233 36
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|++++ .|.+++. ...|.+..+++ .. +.+...+..... . ....++. +.+....+..++++.+..+
T Consensus 278 Divt~--gK~l~gG~~P~gav~~~~~-i~-~~~~~~~~~~~~-------~--~~~~T~~-g~pl~~aaa~a~L~~l~~~- 342 (442)
T PRK13360 278 DLLTC--AKGLTNGAIPMGAVFVSSE-IH-DAFMQGPEAGIE-------F--FHGYTYS-GHPLACAAALATLDLYERE- 342 (442)
T ss_pred ceeee--eeccccCccceEEEEEcHH-HH-HHhhcCCccccc-------c--ccCCCCC-CCHHHHHHHHHHHHHHHhC-
Confidence 87655 7988642 23566655443 32 333221110000 0 0001111 2223344455566655433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-Cce-EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFA-VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
...++..++.+++++.|+++..+..+.+. ..+ ...+.+.+... .+ ......+...+.++
T Consensus 343 --~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~-------------~~----~~~~~~~~~~l~~~ 403 (442)
T PRK13360 343 --GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDG-------------KP----GKRAYEVFLKCFEK 403 (442)
T ss_pred --CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCC-------------Cc----chhHHHHHHHHHHC
Confidence 35667777888888888765323222221 111 22333332110 00 11224566677788
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|.+ +.+. ...+||+++ ..+|++|||.++++|.+.+.++
T Consensus 404 Gvl-~~~~----~~~lr~~Pp-l~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 404 GLM-IRYT----GDILALSPP-LIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CcE-EEec----CCEEEEeCC-CccCHHHHHHHHHHHHHHHHHh
Confidence 754 3321 257999955 6799999999999999988654
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-10 Score=105.01 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc-cC---ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITA-VD---TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~-~~---pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++++.+. +.+|+++...+++|. .. .+++|.++|++||+++++|.++++.............++ .
T Consensus 171 d~~~l~~~i~~~------~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~-~ 243 (396)
T PRK02627 171 DIEALKAAITDK------TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGI-E 243 (396)
T ss_pred CHHHHHHhcCCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCC-C
Confidence 889999998532 446777666777774 22 389999999999999999999974432221100001122 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|.++ ..|.+++....|+++.+++ .. +.+... .+.. ++ ++.+....++.++++.+..
T Consensus 244 pdi~t--~sK~~~~G~rig~~~~~~~-~~-~~~~~~-~~~~---------------t~-~~~~~~~~aa~~~l~~~~~-- 300 (396)
T PRK02627 244 PDIMT--LAKGLGGGVPIGAVLAKEK-VA-DVFTPG-DHGS---------------TF-GGNPLACAAALAVIEIIEE-- 300 (396)
T ss_pred CCEEE--EcchhhCCcccEEEEEcHH-HH-hccCCC-CCCC---------------CC-CCCHHHHHHHHHHHHHHhh--
Confidence 56554 5699885555788776533 33 222110 0000 00 1111223333444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
++..++..++.+++++.|.++ +.+..+ .....++.+.+... ..++.+.+.
T Consensus 301 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~~------------------------~~~~~~~l~ 354 (396)
T PRK02627 301 -EGLLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIGIELDRP------------------------AAEIVKKAL 354 (396)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEEEEecCc------------------------HHHHHHHHH
Confidence 334555666666666666543 222222 12344555555211 145777777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
++|. ++.+. +...+|++++ ...++++++.+++.|++.+..+
T Consensus 355 ~~Gv-~v~~~---~~~~lRi~~~-~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 355 EKGL-LINVT---GDNVLRLLPP-LIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred HCCe-EEeec---CCCEEEEECC-cccCHHHHHHHHHHHHHHHHhh
Confidence 7875 44432 3467999955 5678999999999999887654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-10 Score=104.13 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
++++|++.+..... ...+..|++.-...+.|.+.| +++|.++|++||+++++|.+|++.............++ .
T Consensus 191 ~~~~l~~~~~~~~~-~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv-~ 268 (433)
T PRK08117 191 CLRDLESLFKHQVT-PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV-V 268 (433)
T ss_pred HHHHHHHHHHhccC-CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCC-C
Confidence 56777887764211 113557777777788899988 99999999999999999999985433222111001122 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+ .+..|.+++..-.|++..+++ .. +.+... .+.. ++ .+-+..+.+..++++.+..
T Consensus 269 pDi--~t~sK~lg~G~pigav~~~~~-i~-~~~~~~-~~~~---------------T~-~~np~~~aaa~a~L~~l~~-- 325 (433)
T PRK08117 269 PDI--MTIAKGIASGLPLSAVVASKE-LM-EQWPLG-SHGT---------------TF-GGNPVACAAALATLEVIKE-- 325 (433)
T ss_pred CCE--eehhhhccCCCcceeEEEcHH-HH-hhccCC-CCCC---------------CC-CcCHHHHHHHHHHHHHHHh--
Confidence 565 567899885444676665533 33 222110 0000 11 1112233444455554422
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC-CeEEec-CCCc-eEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDK-RFEVVF-PRHF-AVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~-~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+...++..++.+++++.|.++. .+.+.. .+.. .++.+.+.+... .+. ......+.+.+.+
T Consensus 326 -~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~-------------~~~---~~~~~~~~~~l~~ 388 (433)
T PRK08117 326 -EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDG-------------EPD---GDAVEKILDKCLE 388 (433)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCC-------------Ccc---hHHHHHHHHHHHH
Confidence 3456667777788888776541 122211 1222 233444433210 000 1233566777888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.|.++.... ....++|++++ ..+|+++|+.++++|.+.+.++.+
T Consensus 389 ~Gv~~~~~g--~~~~~lRl~p~-~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 389 KGLLFYLCG--NAGNVLRMIPP-LTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred CCCEEeecC--CCCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 886553311 12468999965 578999999999999999877654
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=106.66 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=130.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc----cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITA----VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
-|+++|++.|.+. +..|++.-...+.|. ...+++|.++|++||+++++|.+|.+.............++
T Consensus 171 ~d~~~l~~~l~~~------~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v- 243 (406)
T PRK12381 171 NDLNSASALIDDQ------TCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV- 243 (406)
T ss_pred CCHHHHHHhccCC------eeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCC-
Confidence 3688999988642 346666655555564 35589999999999999999999954433222111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|+ ++..|.+++..-.|.+..+++ .. +.+... ... .++ ++.+.....+.++++.+.
T Consensus 244 ~pDi--~t~sK~l~gG~~ig~~~~~~~-~~-~~~~~~---~~~-------------~t~-~~~pl~~aaa~a~l~~l~-- 300 (406)
T PRK12381 244 TPDV--LTTAKALGGGFPIGAMLTTEK-CA-SVMTVG---THG-------------TTY-GGNPLASAVAGKVLELIN-- 300 (406)
T ss_pred CCCE--EEehhhhhCCCceEEEEEcHH-HH-hhcCCC---CCC-------------CCC-CCCHHHHHHHHHHHHHHh--
Confidence 2576 466799875445677765533 32 332110 000 011 112223344445555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCeEEecCC-C-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD-KRFEVVFPR-H-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
-.++.++..++.+++.+.|+++ ..+.++... . ..++.+.+.+.. ......+.+.+.
T Consensus 301 -~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~--------------------~~~~~~~~~~l~ 359 (406)
T PRK12381 301 -TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEY--------------------AGKAKQISQEAA 359 (406)
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCch--------------------hhHHHHHHHHHH
Confidence 2346677778888888888765 122222222 2 233344443310 122346777788
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
++|.+.. +. +...+|++++ ...|++||+.+++.|++.+.++.
T Consensus 360 ~~Gv~v~-~~---g~~~lRl~p~-~~~t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 360 KAGVMVL-IA---GPNVVRFAPA-LNISEEEITTGLDRFARACERFV 401 (406)
T ss_pred HCCcEEe-eC---CCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 8886543 22 3468999965 56889999999999999987763
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=106.88 Aligned_cols=228 Identities=11% Similarity=0.086 Sum_probs=139.9
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHH---HHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDV---AKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l---~~~~g~~l~v 79 (310)
+...|+. ++.||.+. +.+|+++|++++++.+ .++++..++|++|.+.+.+++.++ |++++ ++++
T Consensus 122 ~~~~g~~---v~~v~~~~---~~~d~~~l~~~~~~~~------~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~ii 188 (366)
T PRK01533 122 AIIEGCE---VKEVALNN---GVYDLDEISSVVDNDT------KIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVI 188 (366)
T ss_pred HHHcCCE---EEEeecCC---CCcCHHHHHHHhCcCC------cEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEE
Confidence 4556776 88999863 3699999999886543 367778899999999886665555 45555 6788
Q ss_pred ecccccccccCh--hhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++........ ........ ..--++..|+.|.++.| .-+|+++. +++.+.........+
T Consensus 189 De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~l~GlRiG~~i~-~~~~~~~l~~~~~~~--------------- 251 (366)
T PRK01533 189 DEAYYEYVTAKDFPETLPLLEK-HKNILVLRTFSKAYGLASFRVGYAVG-HEELIEKLNVVRLPF--------------- 251 (366)
T ss_pred EccHHHhhccccCcchhHHhcc-CCCEEEEeCchHHhcChHHHHhHHhC-CHHHHHHHHHhcCCC---------------
Confidence 999853322110 00011111 01235678999998754 33566543 454443321111110
Q ss_pred CceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
....+...++...+. .+..++..+...+..+++.+.++.+ ++++. +++.+.+.+.+...
T Consensus 252 --------~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~nf~~~~~~~~---------- 311 (366)
T PRK01533 252 --------NVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIPFY-QSQTNFIFLPVENG---------- 311 (366)
T ss_pred --------CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccC-CCcCcEEEEeCCCH----------
Confidence 012233333333443 3445566666777777888888776 77765 56777776765321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++.+.|.+.|..... . ..++|+++. +.++.++|+++|+++....
T Consensus 312 ---------------~~~~~~l~~~GI~Vr~-~----~~~iRis~~----~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 312 ---------------GEIYEACAHAGFIIRP-F----PNGVRITVG----TREQNEGVISVLQQHFENK 356 (366)
T ss_pred ---------------HHHHHHHHHCCcEEcc-C----CCceEEeCC----CHHHHHHHHHHHHHHHHhc
Confidence 3567777788764433 1 357999944 4789999999999988665
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-10 Score=104.16 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
.+++++.|.... ......|++.-..++.|.+.| +++|.++|++||+++++|.+|.+.............++ ..
T Consensus 204 ~~~l~~~i~~~~--~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv-~P 280 (445)
T PRK09221 204 ADDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGV-TP 280 (445)
T ss_pred HHHHHHHHHhcC--CCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCC-CC
Confidence 457777776421 113557777777888899988 99999999999999999999965433222211101222 26
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|++++ .|.+++. ...|.+..+++ .. +.+...+.+..... ...++. +.+.......++++.+..+
T Consensus 281 Di~~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~---------~~~T~~-~~pl~~aaa~a~L~~i~~~- 345 (445)
T PRK09221 281 DIITF--AKGLTNGAIPMGAVIASDE-IY-DAFMQGPEYAIEFF---------HGYTYS-AHPVACAAGLATLDIYREE- 345 (445)
T ss_pred CEEEe--ccccccCcccceeeEEcHH-HH-HhhccCcccccccc---------cccCCC-cCHHHHHHHHHHHHHHHhc-
Confidence 87655 5777532 12455655533 33 33322111100000 001111 1122233344555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-Cce-EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFA-VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
...++..++.++|++.|+++.++..+.+. ..+ +..+.+.+... .. ......+.+.+.++
T Consensus 346 --~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~--------------~~---~~~~~~~~~~~~~~ 406 (445)
T PRK09221 346 --DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPG--------------AP---GARGYEAFMKCFEK 406 (445)
T ss_pred --cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccc--------------cc---cchHHHHHHHHHHC
Confidence 45778888999999988876333222221 122 23343432100 00 11123566777788
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|.+ +.+ ...++||+++ ...|++||+.++++|++.+.++
T Consensus 407 Gv~-~~~----~~~~lr~~Pp-l~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 407 GLL-VRY----TGDTIALSPP-LIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred CeE-Eee----cCCEEEEECC-ccCCHHHHHHHHHHHHHHHHhh
Confidence 844 432 2358999955 6799999999999999988664
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=102.09 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
+++.+++.+.+.......+..|++.-.....|.+.| +++|.++|++||+++++|.++.+.......+.....++ .
T Consensus 177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-~ 255 (412)
T TIGR02407 177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI-E 255 (412)
T ss_pred HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC-C
Confidence 467788888643211112456666666666777433 88999999999999999999875533322211111233 3
Q ss_pred CCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHH-hCH
Q 046506 103 ADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRN-YGV 180 (310)
Q Consensus 103 ~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 180 (310)
.|+++++ |++++ ...+|++++++. + ..+. +..... ++ ++-+...+...++++. +..
T Consensus 256 PDi~~~~--K~lg~~G~pigav~~~~~--~-~~~~--~~~~~~--------------T~-~gnpl~~aaa~a~l~~~i~~ 313 (412)
T TIGR02407 256 PDIVCLS--KSISGYGLPLALTLIKPE--L-DVWK--PGEHNG--------------TF-RGNNLAFVTATAALEYYWSD 313 (412)
T ss_pred CCEEEec--hhccCCccceeEEEEchh--h-hccC--CCccCC--------------CC-CccHHHHHHHHHHHHHHhcc
Confidence 7887765 99875 455788887654 2 2211 100000 11 1111122233455553 433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCC-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRH-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
+ +..++..++.++++++|++ .+++. ...+. ..++.+.+.+ ......+..
T Consensus 314 ~---~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~l~l~~----------------------~~~~~~~~~ 367 (412)
T TIGR02407 314 D---AFEKAVQRKSEIIQERLDRIVAEYPELI-KQVRGRGLMQGIECGD----------------------GDLAGKIAK 367 (412)
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHhhCCCce-EeeecceeEEEEEecC----------------------hHHHHHHHH
Confidence 2 3445555566666665543 44332 22222 3344555543 123356777
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.+.++|.+. .+.. .+..+||++++ ...|++|++.++++|++.+.
T Consensus 368 ~~~~~Gv~v-~~~~-~~~~~lr~~p~-l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 368 AAFENGLII-ETSG-PNDEVIKLLPP-LTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred HHHHCCCEE-eccC-CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHh
Confidence 888888654 3221 12468999955 67999999999999998764
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-10 Score=104.35 Aligned_cols=213 Identities=14% Similarity=0.072 Sum_probs=126.0
Q ss_pred CcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccc
Q 046506 44 IPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD 119 (310)
Q Consensus 44 ~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g 119 (310)
....|++.....+.|.+.| +++|.++|++||+++++|.++.+.........-...++ ..|.+++ .|.+++...
T Consensus 221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv-~pDivt~--~K~l~~G~p 297 (441)
T PRK05769 221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV-EPDIITL--AKAIAGGLP 297 (441)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCC-CCCEEEE--cccccCCcc
Confidence 3557777777788899888 99999999999999999999975433222111001122 2688765 488876555
Q ss_pred eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 046506 120 CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFER 199 (310)
Q Consensus 120 ~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~ 199 (310)
.|++..+++ .. .... ... . .++ .+.+....+..++++.+.. +..++..++.++|++
T Consensus 298 ~gav~~~~~-i~-~~~~---~~~---~-----------~T~-~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~ 353 (441)
T PRK05769 298 LGAVIGRAE-LM-FLPP---GSH---A-----------NTF-GGNPVAAAAALATLEELEE----GLLENAQKLGEYLRK 353 (441)
T ss_pred cEEEEEehh-hh-hcCC---CCC---C-----------CCC-CcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 677766544 22 2111 000 0 011 1112233444455554422 667778888888888
Q ss_pred HHcCCC-CeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 200 LVGSDK-RFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 200 ~L~~~~-~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
.|+++. .+.++... ...++.+.+..... ..+ ......+.+.+.++|.+ +.+ .+...+
T Consensus 354 ~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~------------~~~----~~~~~~~~~~~~~~Gil-~~~---~~~~~l 413 (441)
T PRK05769 354 ELKELKEKYEFIGDVRGLGLMIGVELVKDRK------------EPD----PKLRDKVLYEAFKRGLL-LLG---AGKSAI 413 (441)
T ss_pred HHHHHHHhCCCeeeeecceEEEEEEeccCCc------------ccc----HHHHHHHHHHHHhCCcE-Eec---CCCCEE
Confidence 886541 12222221 23345555533200 000 22335677778888854 332 244689
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|++++ ...|++|||++++++++.+..+
T Consensus 414 r~~p~-l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 414 RIIPP-LIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEeCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 99966 5689999999999999988654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-10 Score=113.02 Aligned_cols=264 Identities=13% Similarity=0.137 Sum_probs=147.3
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccC-CcccccCC---hHHHHHHHHHhCcEE
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGT-TAITAVDT---LKPLCDVAKQFGIWV 77 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~-~~~G~~~p---l~~I~~l~~~~g~~l 77 (310)
+++..|.. ++.||+++++++.+|+++|++++++.+ ...+++..++ |++|.+.+ +++|+++|++||+++
T Consensus 794 ~a~~~Ga~---vv~Vpl~~e~gf~lD~d~Le~al~~~~-----~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~V 865 (1082)
T PLN02672 794 AAKFLKAN---FRRIPTKSSDGFKLTAKTLASTLETVK-----KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARV 865 (1082)
T ss_pred HHHHcCCE---EEEEecccccCCCCCHHHHHHHhccCC-----CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEE
Confidence 35567776 999999865568999999999996421 1256666665 99999865 777888999999999
Q ss_pred EeecccccccccChh-----hhhhhcCCCC---C-C-eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccc
Q 046506 78 HVDAAYAGSACICPE-----FRHFIDGVEG---A-D-SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKA 146 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~-----~~~~~~~~~~---~-D-~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~ 146 (310)
++|.+++...+..+. .......... . . ++..|..|.++.| .-+|+++..++..+...... ..+....
T Consensus 866 IsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~-~~~s~~~- 943 (1082)
T PLN02672 866 IIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSA-PGLSRPH- 943 (1082)
T ss_pred EEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHh-hhhcCCC-
Confidence 999999643332211 0111111100 0 1 2445888776665 44677766555333222111 0111000
Q ss_pred cccccccCCCCceeccCCCcchHHHHHHHHHhC------HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE
Q 046506 147 TESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG------VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF 220 (310)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~ 220 (310)
.....++.+++..+. ...+.+..+...++.+++.+.|.+. ++.+. +|+.+.+.|
T Consensus 944 ------------------~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~-~PeGGFfLw 1003 (1082)
T PLN02672 944 ------------------STLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVL-EPQGGISMV 1003 (1082)
T ss_pred ------------------cHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEe-cCCcEEEEE
Confidence 001222223332221 1234556666788888999999886 77765 556665544
Q ss_pred EEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 221 RVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.-.+.-. ..+ .+... +.....+..-..++.+.|.++.++.+.+..+ +..+++|+++. +++++++..++.|++
T Consensus 1004 l~l~~~l-~~~--~~~~~-~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa---~~~e~LeeALerL~k 1076 (1082)
T PLN02672 1004 AKPSAYL-GKT--VKLKS-IDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFA---LEDSEFDRALKAIAR 1076 (1082)
T ss_pred EEccccc-ccc--ccccc-cccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEec---CCHHHHHHHHHHHHH
Confidence 3221000 000 00000 0000000001246777777764455555443 44679999965 478899999999987
Q ss_pred HHH
Q 046506 300 HLE 302 (310)
Q Consensus 300 ~~~ 302 (310)
...
T Consensus 1077 f~~ 1079 (1082)
T PLN02672 1077 FKE 1079 (1082)
T ss_pred HHH
Confidence 654
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-10 Score=104.62 Aligned_cols=242 Identities=13% Similarity=0.096 Sum_probs=139.3
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
+++.+|+. ++.+|..+++++.+|++.+++++.+.+. ...++++..++|++|.+.+ +++|+++|++||++++
T Consensus 140 ~~~~~G~~---~~~v~l~~~~~~~~d~~~l~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 140 IFKSAGLN---VKEYRYYDPKTKGLDFDGMLEDLRTAPN---GSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred HHHHcCCc---eeeccccCcccCCcCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 35667887 9999984323468999999999975311 1346777889999999866 6678889999999999
Q ss_pred eecccccccccCh--hhhhh--hcCCCCCCeeeeecccccccc-cceEEEE--EeCchhHHhhhccCCcccccccccccc
Q 046506 79 VDAAYAGSACICP--EFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLW--VKDPSDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 79 vD~a~~~~~~~~~--~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~--v~~~~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
+|.++........ ..... ......-=++..|+.|.++.| .-+|+++ +.++............+.....
T Consensus 214 ~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 288 (404)
T PTZ00376 214 FDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMY----- 288 (404)
T ss_pred EehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhc-----
Confidence 9999865443210 11100 011100115668999999854 5577764 4555432111100000000000
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHhCH--------HHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEE
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNYGV--------ANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCF 220 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~ 220 (310)
.+ ...+...++...+.. +.+.+..++..++.+.+.+.|.+.. ++... .+..+...|
T Consensus 289 ---------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~p~gg~f~~ 355 (404)
T PTZ00376 289 ---------SS---PPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHI-INQIGMFSF 355 (404)
T ss_pred ---------CC---CchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-ccCceEEEe
Confidence 00 011222222222321 1234445667778888888888752 23333 344444333
Q ss_pred EEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 221 RVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+.-. .++.+.|.++.++++.+. + |+|+++ .+.++++.++++|+++
T Consensus 356 -~~~~-------------------------~~~~~~L~~~~~v~v~p~-----~--Ris~~~--~~~~~~~~~~~~l~~~ 400 (404)
T PTZ00376 356 -TGLT-------------------------KEQVERLIEKYHIYLLDN-----G--RISVAG--LTSKNVDYVAEAIHDV 400 (404)
T ss_pred -cCCC-------------------------HHHHHHHHHhCCEeecCC-----C--eEEEec--cCHHhHHHHHHHHHHH
Confidence 2211 245666777745565543 1 999653 6889999999999987
Q ss_pred HH
Q 046506 301 LE 302 (310)
Q Consensus 301 ~~ 302 (310)
+.
T Consensus 401 ~~ 402 (404)
T PTZ00376 401 VR 402 (404)
T ss_pred Hh
Confidence 53
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-10 Score=101.89 Aligned_cols=232 Identities=15% Similarity=0.104 Sum_probs=154.3
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEe
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHV 79 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~v 79 (310)
+|+..|.. ++.||.++ +.+|++.+.+.+.+. +.+|.+..++|+||...+.++|.+++... +.+|+|
T Consensus 115 ~a~~~g~~---~~~v~~~~---~~~d~~~~~~~~~~~------~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVv 182 (356)
T COG0079 115 AAQLAGAE---VVKVPLKE---FRLDLDAILAAIRDK------TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI 182 (356)
T ss_pred HHHhcCCe---EEEecccc---cccCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 35667776 89999984 689999999999874 34888889999999998888877777754 889999
Q ss_pred ecccccccccChhhhhhhcCCCCCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.|+.-+.- +..-.... ..+ ++.=++.|.++-+ .=+|+ .+.+++.+.......++|--
T Consensus 183 DEAY~eF~~--~~~~~l~~---~~~nlivlRTfSKa~gLAGlRlGy-~ia~~~~i~~l~~vr~p~~v------------- 243 (356)
T COG0079 183 DEAYIEFSP--ESSLELLK---YPPNLIVLRTFSKAFGLAGLRVGY-AIANPELIAALNKVRPPFNV------------- 243 (356)
T ss_pred eCchhhcCC--chhhhhcc---CCCCEEEEEecHHhhhcchhceee-ccCCHHHHHHHHHhcCCCCC-------------
Confidence 999854432 11111111 233 4567899987765 33455 56677665433333333311
Q ss_pred CceeccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecCCCceEEEEEEcCCcchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
...+..++...+.. +.+++..++..+..+++.+.|++++ +. +. ++..|.+.+.....
T Consensus 244 ----------~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~-pS~aNFvlv~~~~~--------- 302 (356)
T COG0079 244 ----------SSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFGVF-PSQANFVLVRVPDA--------- 302 (356)
T ss_pred ----------CHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeec-CCCCcEEEEECCCc---------
Confidence 22233333333322 5678888889999999999999885 54 44 66688887777641
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
. ...+.+.|.++|.+.-..... ....++|+++. |+|+-++++++|+++...
T Consensus 303 -------------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvg----t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 303 -------------E-AAALAEALLKKGILVRDCSSVGLLPGYLRITVG----TPEENDRLLAALREVLKG 354 (356)
T ss_pred -------------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHHhc
Confidence 1 246778888888654433221 23569999944 355669999999988753
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=110.32 Aligned_cols=258 Identities=15% Similarity=0.142 Sum_probs=145.5
Q ss_pred ecCCCCCCEEEEecCCCCCc---ccCH-----HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcE
Q 046506 5 IVGIDVKNFRAIKTTKSSSY---GLSP-----DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIW 76 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~---~id~-----~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~ 76 (310)
+.|+. .+++++..++-| .+++ +.++++|.+..+. .+|+.++++ .+|..|.+-++++|+++| |+.
T Consensus 254 lsga~---PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit-~pTYdGi~yd~~~I~~~~---g~~ 325 (713)
T PRK15399 254 MSDVV---PIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVIT-NSTYDGLLYNTDWIKQTL---DVP 325 (713)
T ss_pred HcCCe---eEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEE-CCCCCceeeCHHHHHHHh---CCC
Confidence 44554 777766543211 3455 9999999876432 245665555 457789999999999999 677
Q ss_pred E-EeecccccccccChhhhhh--hcCCCCCCee---eeecccccccccceEEEEEeCch---hHHhhh----ccCCcccc
Q 046506 77 V-HVDAAYAGSACICPEFRHF--IDGVEGADSF---SLNAHKWFFTTLDCCCLWVKDPS---DLVNSL----STNPEYLK 143 (310)
Q Consensus 77 l-~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~---~~~~hK~l~~p~g~g~l~v~~~~---~~~~~~----~~~~~y~~ 143 (310)
+ |||.||++...+.+.+++. ..+..++|.+ +-|.||++.+..++++++++..- .+.+++ +.+|.|.-
T Consensus 326 ~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~L 405 (713)
T PRK15399 326 SIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPI 405 (713)
T ss_pred EEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHH
Confidence 6 7999998887666544321 1111246777 99999999999999999997541 122221 12222211
Q ss_pred ccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecCCCc-e
Q 046506 144 NKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR------FEVVFPRHF-A 216 (310)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~------~~v~~~~~~-~ 216 (310)
.+++-.+.+.+....-++++++..+.+..+++.|.++++ |+++.+... .
T Consensus 406 ------------------------mASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~ 461 (713)
T PRK15399 406 ------------------------VASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDE 461 (713)
T ss_pred ------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCC
Confidence 112222222332223456778888899999999988766 666643110 0
Q ss_pred EEEEEE-------------------cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 217 VVCFRV-------------------SPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 217 ~v~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
.-+|.+ .|..++..+.+..... ..+...--...+.+.|.+.|+ .+..+. ...+=
T Consensus 462 ~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g---~~~~~Gi~g~~l~~~L~e~gI-~~E~~d---~~~vL 534 (713)
T PRK15399 462 AECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQG---NMSEEGIPAALVAKFLDERGI-VVEKTG---PYNLL 534 (713)
T ss_pred ccceecCCCcccccccccccccccCCCceEEEEecCccccc---ccccCCCCHHHHHHHHHHcCC-EEEecC---CCeEE
Confidence 001211 1211111111100000 000000111356666766654 443332 22333
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+- .++..|+++++.|+++|.++-+
T Consensus 535 ~l-~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 535 FL-FSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred EE-eCCCCCHHHHHHHHHHHHHHHH
Confidence 43 3478999999999999998744
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-09 Score=100.98 Aligned_cols=236 Identities=13% Similarity=0.048 Sum_probs=136.9
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHH-HhCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAK-QFGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~-~~g~~l~vD~ 81 (310)
++..|+. ++.++.+++ ++.+|+++|++++++... ..+.+++++..+|++|...+.+++.++++ .+|+++++|.
T Consensus 133 ~~~~g~~---~~~~~~~~~-~~~~d~~~l~~~~~~~~~--~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De 206 (374)
T PRK02610 133 AQTLGIP---VVRVGRDPE-TFEIDLAAAQSAIEQTQN--PPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDE 206 (374)
T ss_pred HHHcCCE---EEEecCCcc-cCCCCHHHHHHHHHhhcC--CCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEec
Confidence 4567777 889998764 478999999999965211 12457777788999999988776655543 1489999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
++.-.... ..... ..... --++..|..|.++.| .-+|+++ .++..+.........+.
T Consensus 207 ~Y~~~~~~-~~~~~-~~~~~-~~ivi~SfSK~~g~~GlRiG~~v-~~~~l~~~l~~~~~~~~------------------ 264 (374)
T PRK02610 207 AYFEFSQT-TLVGE-LAQHP-NWVILRTFSKAFRLAAHRVGYAI-GHPELIAVLEKVRLPYN------------------ 264 (374)
T ss_pred cccccCcc-chHHH-HhcCC-CEEEEEecchhccCcccceeeee-cCHHHHHHHHHhcCCCC------------------
Confidence 98644211 11111 11110 114668999999654 5567665 45544433221111110
Q ss_pred ccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
...+...++...+. .+.+.+.+++..+..+.+.+.|+.++++.+. ++..+.+.+.+....
T Consensus 265 -----~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~~~------------- 325 (374)
T PRK02610 265 -----LPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLSQDA------------- 325 (374)
T ss_pred -----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCCCCC-------------
Confidence 01111112222222 2344444444455566778888877787754 555665555554310
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.+.+.|... .+ ..+.+|+|+. ++++++.+++.|++++..
T Consensus 326 --~-------~~~~~~~l~~~gi~v-~~----~~~~lRls~~----~~~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 326 --A-------LAALHQALKAQGTLV-RH----TGGGLRITIG----TPEENQRTLERLQAALTQ 371 (374)
T ss_pred --C-------HHHHHHHHHHCCEEE-Ee----CCCeEEEeCC----CHHHHHHHHHHHHHHHhh
Confidence 0 135666676777543 22 2468999955 246789999888877654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=103.14 Aligned_cols=240 Identities=9% Similarity=0.022 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+.+++.+... .......|++.-..++.|.+.| +++|.++|++||+++++|.+|.++......+.-...++ ..|
T Consensus 208 ~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv-~PD 284 (460)
T PRK06541 208 DRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY-VPD 284 (460)
T ss_pred HHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCC-CCC
Confidence 6677777542 1112456666666778899888 99999999999999999999954433333211101223 368
Q ss_pred eeeeeccccccccc-ceEEEEEeCchhHHhhhccCC-ccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 105 SFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNP-EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 105 ~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+++ ..|.+++.+ ..|.+..+++ .. +.+.... .+.... + ..+-+..+++..++++.+..
T Consensus 285 ivt--~gK~l~~G~~pigav~~~~~-i~-~~~~~~~~~~~~~~-------------T-~~gnp~~~aaala~l~~l~~-- 344 (460)
T PRK06541 285 IIT--CAKGITSGYSPLGAMIASDR-LF-EPFLDGPTMFLHGY-------------T-FGGHPVSAAVALANLDIFER-- 344 (460)
T ss_pred EEE--ecccccCCccceeEEEEcHH-HH-HHhhcCCCccccCC-------------C-CCCCHHHHHHHHHHHHHHHh--
Confidence 775 579888533 4677766544 32 2221111 111000 0 01111223333344444432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHH-HHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINE-FNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~ 259 (310)
+...++..++.++|.+.|+++....++.. ....++.+.+..... ...+......+. ....+.+.+.+
T Consensus 345 -~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~ 414 (460)
T PRK06541 345 -EGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKA---------TKETFTDDESERLLRGFLSPALFE 414 (460)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcc---------cccCCcchhhhhhHHHHHHHHHHh
Confidence 34567788888889888877632222111 223445555432100 000000000011 22356677888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|. ++.+. ..+..++|+++. ...|++|||.++++|.+.+..+
T Consensus 415 ~Gi-~~~~~-~~g~~~lrl~Pp-l~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 415 AGL-YCRAD-DRGDPVVQLAPP-LISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred CCe-EEEec-CCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 875 44331 124468999966 6799999999999999998765
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=102.24 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=102.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH------hCcEEEeecccccccccChhhhhhhcC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ------FGIWVHVDAAYAGSACICPEFRHFIDG 99 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~------~g~~l~vD~a~~~~~~~~~~~~~~~~~ 99 (310)
.|+++++++|.+.... ..+.+|.+..++|++|.+.|+++|.++|++ ++++++||.++.......+ . .
T Consensus 157 ~d~~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~p----l--~ 229 (427)
T PRK07049 157 LSEAAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKP----L--E 229 (427)
T ss_pred CCHHHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCc----c--c
Confidence 5778899888653211 125688888999999999999999999988 8999999999754432111 1 1
Q ss_pred CCCCCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 100 VEGADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 100 ~~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
.++|+++.|++|++++ +.-.+++++.+++........... + +........|.+++.+
T Consensus 230 -~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~-~--------------------g~~ls~~~a~l~~r~L 287 (427)
T PRK07049 230 -HGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSA-I--------------------GTQLDPHSCWMLGRSL 287 (427)
T ss_pred -cCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHh-c--------------------CCCCCHHHHHHHHcCC
Confidence 1589999999999995 322233445555443222111100 0 1112334455555433
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEV 209 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v 209 (310)
+.+..++++..++++.+.+.|++.|++.-
T Consensus 288 --~tl~~R~~~~~~~a~~la~~L~~~p~V~~ 316 (427)
T PRK07049 288 --ETLVLRMERANRNARAVAEFLRDHPKVEK 316 (427)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 56788889999999999999999988853
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-09 Score=99.10 Aligned_cols=246 Identities=12% Similarity=0.031 Sum_probs=134.1
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccc-cccCh-------
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGS-ACICP------- 91 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~-~~~~~------- 91 (310)
+|.+|+++|+++|++...+. .+....-..+++..|.+.| +++++++|++||+++|+|||.-+. +++..
T Consensus 164 kG~~dl~~le~~I~~~g~~~-i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~ 242 (467)
T TIGR02617 164 KGNFDLEGLERGIEEVGPNN-VPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYK 242 (467)
T ss_pred CCCcCHHHHHHHHhhcCCCC-ceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhc
Confidence 46899999999998642221 1222222223444566544 778899999999999999998653 32211
Q ss_pred --hhhhhhcC-CCCCCeeeeecccccccccceEEEEEeCc---hhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 92 --EFRHFIDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDP---SDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 92 --~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~---~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
..++.... ..++|++++|+.|.+++|.|+ ++..+++ +++.+.....+.|-+ .+.| ||..
T Consensus 243 ~~si~eI~rE~~~~aDsvt~slsKglgApvGg-~Lag~d~~~~~l~~~~~~~~i~~EG--------f~tY------GGla 307 (467)
T TIGR02617 243 NWSIEQITRETYKYADMLAMSAKKDAMVPMGG-LLCFKDDSFFDVYTECRTLCVVQEG--------FPTY------GGLE 307 (467)
T ss_pred CCCHHHHHHHhhccCCEEEEEcCCCCCCcccc-eEEecchhHHHHHHHHHhhcccccC--------CcCc------Cchh
Confidence 11111111 257999999999999999765 4445555 444443222222211 1111 1111
Q ss_pred cchHHHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHH
Q 046506 166 FRSLKLWF-VLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEE 244 (310)
Q Consensus 166 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
.+.+.+.+ .|... .-+..+++-..-.++|.+.|.+- |+.+.. +...-+.+.....- - .-|..
T Consensus 308 grd~ea~a~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~l-----p-----hip~~-- 370 (467)
T TIGR02617 308 GGAMERLAVGLYDG---MNLDWLAYRINQVQYLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLL-----P-----HIPAD-- 370 (467)
T ss_pred HHHHHHHHhhhhhc---ccHHHHHHHHHHHHHHHHHHHhC-CCcEEe-cCccEEEEehhhhC-----C-----CCChh--
Confidence 11221111 22211 22445555566678888888875 888875 55444433222100 0 00011
Q ss_pred HHHHHHHHHHHHHHh-cCcEEEE-EeE-----EC-------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 245 RINEFNRELLESINA-SGKAYMT-HAV-----LG-------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 245 ~~~~~~~~l~~~l~~-~g~~~~~-~~~-----~~-------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+--.+.+.-.|.. .|+-.+. ++. ++ ....+|+.+..---|.+++|.+.+++..+.+.
T Consensus 371 --~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 371 --QFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred --hCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1111344444443 3332222 111 11 14689999886667889999999999998864
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=100.80 Aligned_cols=214 Identities=14% Similarity=0.108 Sum_probs=121.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|++++++.+.+. ...|++....+++|.+.| +++|.++|+++|+++++|++|.+.............++
T Consensus 153 ~dl~~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~- 225 (375)
T PRK04260 153 NDLNSVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI- 225 (375)
T ss_pred CCHHHHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC-
Confidence 4789999888532 347777777888888765 89999999999999999999864322221111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|++ +..|.++...-.|+++.+++ .. +.+... .+.. ++ .+-+..+..+.++++.+..+
T Consensus 226 ~pdi~--t~sK~l~~G~~ig~~~~~~~-~~-~~~~~~-~~~~---------------t~-~~~~~~~~aa~a~l~~~~~~ 284 (375)
T PRK04260 226 EPDIF--TLAKGLANGVPVGAMLAKSS-LG-GAFGYG-SHGS---------------TF-GGNKLSMAAASATLDIMLTA 284 (375)
T ss_pred CCCEE--EecccccCCcceEEEEEcHH-HH-hhcCCC-CCCC---------------CC-CcCHHHHHHHHHHHHHHHhh
Confidence 25754 67898874344677776543 22 222110 0000 11 11112233344444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHH----cCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLV----GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L----~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+..++..+..+++++.| .+.+.+..+.. ....+.+.+... ...+.+.+
T Consensus 285 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~------------------------~~~~~~~l 336 (375)
T PRK04260 285 ---GFLEQALENGNYLQEQLQKALQDKETVTTVRG-LGYMIGIETTAD------------------------LSQLVEAA 336 (375)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEec-cceEEEEEecCc------------------------HHHHHHHH
Confidence 33344444455544444 43332222211 344455544221 13567778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.++|.+. .+. +...+|++++ ...+++||+++++.|+++
T Consensus 337 ~~~Gi~v-~~~---~~~~lR~~~~-~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 337 RDKGLIV-LTA---GTNVIRLLPP-LTLTKEEIEQGIAILSEV 374 (375)
T ss_pred HhCCCEE-ecC---CCCEEEEcCC-CccCHHHHHHHHHHHHHh
Confidence 7888644 322 4478999965 468899999999999764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-09 Score=100.60 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++.+++.+... .+.+++++-.....|.+.| +++|.++|++||+++++|.++.+............. +
T Consensus 175 d~~~l~~~~~~~-----~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~---~ 246 (408)
T PRK04612 175 DVEALEAAMAGG-----DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQE---Q 246 (408)
T ss_pred CHHHHHHhhCCC-----CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhc---C
Confidence 678888888521 2334444433333444442 899999999999999999999754332221111111 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+.....+..|.+++....|++..+++ .. +.+... .+ . .++. +-+..+..+.++++.+..
T Consensus 247 ~~pdi~t~~K~l~~G~piga~~~~~~-~~-~~~~~~-~~---~------------~t~~-~~p~~~aaa~a~L~~~~~-- 305 (408)
T PRK04612 247 VTPDIVTLAKALGGGFPIGAMLAGPK-VA-ETMQFG-AH---G------------TTFG-GNPLAAAVARVALRKLAS-- 305 (408)
T ss_pred CCCCEEEEcchhcCCCceEEEEECHH-HH-hhhcCC-Cc---C------------CCCC-CCHHHHHHHHHHHHHHHh--
Confidence 33334455898875445677765533 32 332110 00 0 0111 222334444555554432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+++.++..++.+++++.|+++ ..+.++.. ....++.+.+.+.. ......+.+.+.+
T Consensus 306 -~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~--------------------~~~a~~i~~~l~~ 364 (408)
T PRK04612 306 -PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAH--------------------AGQAGAILDLAAE 364 (408)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCch--------------------hhHHHHHHHHHHH
Confidence 456777888888888888764 12222221 12334455543310 1223467777888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+|.+. .+ .+...+|++++ ...+++||+.+++++++.+..+.+
T Consensus 365 ~Gvlv-~~---~g~~~lRl~Pp-l~it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 365 HGLLL-LQ---AGPDVLRFVPA-LNLTDAELADGLARLRLALADYVA 406 (408)
T ss_pred CCeEE-ee---CCCCEEEEcCC-ccCCHHHHHHHHHHHHHHHHHHhh
Confidence 88543 32 24578999955 679999999999999999877654
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-09 Score=94.84 Aligned_cols=255 Identities=13% Similarity=0.128 Sum_probs=156.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC---ChHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD---TLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---pl~~I~~l~~~~g~~l~v 79 (310)
|...||+ |++.+.-|..+|.+|++.+|.+++++| +.+++..++|..|.+. -+++|+++|+++|++++.
T Consensus 167 a~~~~lE---VR~ydlLPe~~weIDL~~veal~DENT------~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 167 AIYSGLE---VRYYDLLPEKDWEIDLDGVEALADENT------VAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred hhhcCce---eEeecccCcccceechHHHHHhhccCe------eEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 5667888 888887776689999999999999986 3777778889999874 499999999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeee-eecccccccc-cceEEEEEeCchh-HHhhhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFS-LNAHKWFFTT-LDCCCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~-~~~hK~l~~p-~g~g~l~v~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|..++-..+....+-+. ... .+-+++ .+..|.+..| --.|.+.+.++.- +++. ..+. +..+
T Consensus 238 DEVY~~~vfg~~pfvpmg~fss--iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~-----~~~q-------~~~~ 303 (447)
T KOG0259|consen 238 DEVYGHTVFGDKPFVPMGKFSS--IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDT-----KVVQ-------GIKN 303 (447)
T ss_pred hhhcceeecCCCCccchhhccc--cCceEeecccccccccCCceeeeEEEecccccccch-----HHHH-------HHHH
Confidence 99985444333221110 111 244444 4557776666 3467787777632 1110 0000 0000
Q ss_pred CCCceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcchhhh
Q 046506 155 YKDWQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAVMDKL 231 (310)
Q Consensus 155 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~~~~~ 231 (310)
+.+.. ..+ +-..++...|+.--++=++....-...++..-.+.|+++|++...-.|+.. .+.+.+.-...
T Consensus 304 ~~~~~---~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~---- 376 (447)
T KOG0259|consen 304 FLDII---PGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLF---- 376 (447)
T ss_pred HHhcc---CCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhh----
Confidence 00000 001 111222333333233446677777888999999999999999844345443 33333322110
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEE-EEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAY-MTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+... ..++..+|.++..++ +.++-.+..+++|++++ ...++++...+.|++...+
T Consensus 377 ------------~~~~d-D~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~---~~~~~leea~~Rik~Fc~R 433 (447)
T KOG0259|consen 377 ------------PDIED-DVDFCQKLAREESVICLPGQAFGLKNWLRIVIT---VEEEMLEEAFSRIKEFCDR 433 (447)
T ss_pred ------------ccccc-cHHHHHHHhhhcceEEeccccccCCCeEEEEEc---cChHHHHHHHHHHHHHHHh
Confidence 00011 135666676655554 44445566899999955 5678899999999998854
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=102.76 Aligned_cols=247 Identities=11% Similarity=0.089 Sum_probs=151.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChH---HHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLK---PLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~---~I~~l~~~~g~~l~v 79 (310)
...+|+. ++.||+|++ .+|+|+||+.+...+. ..+.+.....|++|+..+++ +|.++|++||++++-
T Consensus 196 ~~~~g~~---~~~vp~d~~---G~~~e~le~~~~~~~~----k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 196 LEALGAR---VIPVPVDED---GIDPEALEEALAQWKP----KAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred HHHcCCc---EEecCCCCC---CCCHHHHHHHHhhcCC----cEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence 3456776 999999975 4999999999987521 23555667779999998876 599999999999999
Q ss_pred ecccccccccChhhhhhhcCC--CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
|..++-..+....... ...+ .+==++..|+.|.+.....+|++...+. .++...... .....
T Consensus 266 DD~y~el~~~~~p~~~-l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~-~~~~~~~~k-~~~~~------------- 329 (459)
T COG1167 266 DDYYGELRYDGPPPPP-LKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE-LIEKLLRLK-QAADL------------- 329 (459)
T ss_pred eCcchhhhcCCCCCCC-hHhhCCCCCEEEEeeehhhcccccceeeeeCCHH-HHHHHHHHH-HHhcC-------------
Confidence 9998765544221110 0111 1223577999999987788888865433 333322111 00000
Q ss_pred ceeccCCCcchHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHcCC-C-CeEEecCCCce-EEEEEEcCCcchhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRNYG--VANLRHFLRSHVNMAKLFERLVGSD-K-RFEVVFPRHFA-VVCFRVSPSAVMDKLK 232 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~~l~~~L~~~-~-~~~v~~~~~~~-~v~~~~~~~~~~~~~~ 232 (310)
++-.+....++.-+. -| ...+..+++...+..+.+.+.|.+. + .+.+. .|..+ .+++.+.+. .
T Consensus 330 ----~~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~-~p~gG~flwl~l~~~-~----- 397 (459)
T COG1167 330 ----GPSSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWT-RPEGGLFLWLELPEG-I----- 397 (459)
T ss_pred ----CCChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeee-cCCceEEEEEEcCCC-C-----
Confidence 000111122222232 23 3345566666666777788888765 3 34444 44444 444444442 1
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE-EeEE-C---CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMT-HAVL-G---GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~-~---~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ...+.....++|..... +..+ . ..+.+|+++++ .++++++..+..|.+.+....
T Consensus 398 ---------~-------~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~--~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 398 ---------D-------ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS--PSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred ---------C-------HHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 1 13566666677765554 2222 1 24599999774 679999999999988887653
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-09 Score=98.63 Aligned_cols=227 Identities=14% Similarity=0.060 Sum_probs=133.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeec
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~ 81 (310)
+..|.+ ++.+|++.++++.++++++++.+. . +.+++++.++|++|.+.+.+++.++++.. ++++++|.
T Consensus 124 ~~~g~~---~~~~~l~~~~~~~~~~~~~~~~~~-~------~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De 193 (357)
T PRK14809 124 RYHHGE---VREYPVSKADDFEQTADTVLDAYD-G------ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDE 193 (357)
T ss_pred HHcCCe---EEEEecccCcCCCcCHHHHHHhhc-C------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEec
Confidence 445666 888888754346778887777652 1 33677778999999999988777776654 78999999
Q ss_pred ccccccccChhhhhhhcCCCCCC-eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICPEFRHFIDGVEGAD-SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D-~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
+++....... ....... .-. .+..|..|.++.| .-+|+++.. ++.+........++.
T Consensus 194 ~y~~~~~~~~-~~~~~~~--~~~vi~~~SfSK~~~~~GlRiG~~~~~-~~~~~~~~~~~~~~~----------------- 252 (357)
T PRK14809 194 AYGEFAERPS-AVALVEE--RDDVAVLRTFSKAYGLAGLRLGYAVVP-EEWADAYARVNTPFA----------------- 252 (357)
T ss_pred hhhhccCCch-hHHHHhh--CCCEEEEecchhHhcCcchhheeeecC-HHHHHHHHHhCCCCC-----------------
Confidence 9865432111 0001110 112 4557899999754 456777654 434433321111110
Q ss_pred eccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
...+...+++..+. .+.+++..+...+..+.+.+.|... .. ++..+.+.+.+...
T Consensus 253 ------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~-~~~g~f~~~~~~~~------------- 308 (357)
T PRK14809 253 ------ASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP----TW-ESAGNFVLAEVGDA------------- 308 (357)
T ss_pred ------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc----cC-CCCCCEEEEECCCH-------------
Confidence 11222333333332 3445666666666667777777542 12 45566665554221
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+.+.|.....+......+++|+++. ++++++.++++|++++
T Consensus 309 ------------~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~----~~~~~~~~l~~L~~~l 355 (357)
T PRK14809 309 ------------SAVAEAAQERGVIVRDCTSFGLPECIRITCG----TREETERAVEVLNEVL 355 (357)
T ss_pred ------------HHHHHHHHHCCEEEEECccCCCCCeEEEecC----CHHHHHHHHHHHHHHh
Confidence 3566667667654444333333578999954 3689999999998765
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=95.36 Aligned_cols=249 Identities=13% Similarity=0.085 Sum_probs=152.4
Q ss_pred EecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhh
Q 046506 16 IKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH 95 (310)
Q Consensus 16 v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~ 95 (310)
-.+|++ +|-||.|.||+.-... +|.++++ +.+..-...+..++.++|.+.|+.|+.|.||-.+........
T Consensus 167 Ykv~~~-TG~IDYD~Le~~A~~f-----rPk~iia--G~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vip- 237 (477)
T KOG2467|consen 167 YKVDPS-TGYIDYDKLEKTATLF-----RPKLIIA--GTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIP- 237 (477)
T ss_pred eeeCCC-CCceehHHHHHHHHhc-----CCcEEEe--ccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCC-
Confidence 345664 5689999999886654 3655544 333344567899999999999999999999955543222111
Q ss_pred hhcCCCCCCeeeeecccccccccceEEEEEeCch-hHHhhhccCCccccccccccccccCC-CCceeccCCC-cchHHHH
Q 046506 96 FIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPS-DLVNSLSTNPEYLKNKATESKQVVDY-KDWQITLSRR-FRSLKLW 172 (310)
Q Consensus 96 ~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~ 172 (310)
.-+++||+++.+.||.|.+|.|.=+|| |..- .....-.....|-.. .-++. ..-.+|+|-. -.+.+++
T Consensus 238 --sPFey~DiVTTTTHKsLRGPRg~mIFy-RkGvk~~~~k~g~~i~ydlE------~kINfaVFP~lQGGPHNhtIaalA 308 (477)
T KOG2467|consen 238 --SPFEYCDIVTTTTHKSLRGPRGAMIFY-RKGVKSIKPKQGKEILYDLE------DKINFAVFPGLQGGPHNHTIAALA 308 (477)
T ss_pred --CcccccceeeccccccccCCcceeEEE-eccCCcCCCCCCCcceechh------hhhhhhccccccCCCCcchHHHHH
Confidence 123579999999999999998755554 4321 110000001111111 11121 2234566533 4556777
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHH
Q 046506 173 FVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNR 251 (310)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
.+|++.....+.+..++..++++.|.+.|.+. |++++.. .+..++.+.+.+..+. ....+
T Consensus 309 vALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~d------------------GarvE 369 (477)
T KOG2467|consen 309 VALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVD------------------GARVE 369 (477)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCc------------------hHHHH
Confidence 78888888899999999999999999999986 9998854 5677888888886432 11112
Q ss_pred HHHHHHH--hcCcEEEEEeEECCEeEEEEEc---cCCCCCHHHHHHHHHHHHHHH
Q 046506 252 ELLESIN--ASGKAYMTHAVLGGIYAIRFAA---GATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 252 ~l~~~l~--~~g~~~~~~~~~~~~~~iRis~---~~~~~t~edi~~li~~l~~~~ 301 (310)
.+.+.+. .+.+....-...-..+.||+-- ++-...|+|++++.+-|.+.+
T Consensus 370 ~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 370 KVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred HHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 2222211 1111111111111245678752 233456789888888776554
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=100.85 Aligned_cols=234 Identities=10% Similarity=0.039 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+++|++.|... + ....|++.-..++.+.+.| +++|.++|++||+++++|.++.+....+..+.....++ ..|
T Consensus 217 ~~~l~~~i~~~---~-~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PD 291 (459)
T PRK06082 217 ADYLEYVIEKE---G-GIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPD 291 (459)
T ss_pred HHHHHHHHhcC---C-CEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCC
Confidence 35677777532 1 2445666555555333455 89999999999999999999976544433211111233 378
Q ss_pred eeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 105 SFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 105 ~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
+++ ..|.+++.+ ..|.+..++. . ...+. ..+.. .++ ++-+..+.+..++++.+..
T Consensus 292 iv~--~gKgl~gG~~P~~av~~~~~-i-~~~~~--~~~~~--------------~T~-~gnpl~~aaa~a~L~~l~~--- 347 (459)
T PRK06082 292 ILC--IGKGLGGGLVPIAAMITKDK-Y-NTAAQ--ISLGH--------------YTH-EKSPLGCAAALATIEVIEQ--- 347 (459)
T ss_pred EEE--ecccccCCCCcceEEEEcHH-H-Hhhcc--CCCCC--------------CCC-CcCHHHHHHHHHHHHHHHh---
Confidence 887 579888642 4677766544 2 22211 00000 011 1112223344455554433
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSHVNMAKLFERLVGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+...++..++.++|++.|+++ ....++... ....+.+.+..... ...+ . ......+...+.++
T Consensus 348 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~---------~~~~-~----~~~~~~~~~~~~~~ 413 (459)
T PRK06082 348 EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRH---------TKER-A----YDEAEAVLYRCLNN 413 (459)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCcc---------ccCc-c----HHHHHHHHHHHHhC
Confidence 246777778888888888764 122222221 23344455532100 0000 0 12335666777788
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhhccC
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSASK 309 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~~~~ 309 (310)
|.+. .+. +..++|+++. ...|++||+.+++++.+.+.++.+.+.
T Consensus 414 Gvl~-~~~---~~~~i~~~Pp-l~it~~eid~~~~~l~~~l~~~~~~~~ 457 (459)
T PRK06082 414 GLSF-KVS---QGNVIQLSPP-LIITREELTQALAILEEAIAKICQDFN 457 (459)
T ss_pred CCEE-Eec---CCCEEEEeCC-CccCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8644 322 3468999955 458999999999999999988766554
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-09 Score=100.44 Aligned_cols=242 Identities=8% Similarity=0.006 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
.+++|++|.... ...+..|++.-.....|.+.| ++++.++|++||+++++|.++.+.......+.....++ ..
T Consensus 204 ~~~le~~~~~~~--~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v-~P 280 (460)
T PRK06105 204 ANELEALILAEG--PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI-KP 280 (460)
T ss_pred HHHHHHHHHHcC--CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC-CC
Confidence 467888875321 113456777666777788877 99999999999999999999965544333221111233 37
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|++++ .|.+++. ...|.+..+++ .. +.+........... ...+ .++-+..+.+..++++.+.+
T Consensus 281 Di~~~--gK~lggG~~P~~av~~~~~-i~-~~~~~~~~~~~~~~---------h~~T-~~gnpl~~aaa~a~L~~i~~-- 344 (460)
T PRK06105 281 DILVM--SKQLSSSYQPLSAVLMNEK-VY-DPIADESGKIGTFG---------HGFT-ASGHPVAAAVALENLAIIEE-- 344 (460)
T ss_pred Ceeee--ecccccCcccceEEEEcHH-HH-HHHhcccccCcccc---------cCCC-CCCCHHHHHHHHHHHHHHHh--
Confidence 87765 6888753 23566666543 32 33321110000000 0000 11112233334455555533
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
++..++..++.++|++.|+++....++... ...+..+.+..... ...+.+ ........+...+.++
T Consensus 345 -~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~---------~~~~~~--~~~~~a~~i~~~~~~~ 412 (460)
T PRK06105 345 -RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKA---------TKTPFE--PPGKVGARANAAAHEH 412 (460)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcc---------cCCCCC--chhHHHHHHHHHHHHC
Confidence 356777888888888888765333322221 12334455432110 000000 0022334677777788
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
|.+. .+. ..++|++++ ...|++|||.+++.+.+.+.++..
T Consensus 413 Gvl~-~~~----g~~i~l~Pp-l~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 413 GVIS-RAM----GDTLAFCPP-LIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred CeEE-Eec----CCEEEEECC-CccCHHHHHHHHHHHHHHHHHHHH
Confidence 8544 332 248999955 468999999999999999987654
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=100.08 Aligned_cols=237 Identities=11% Similarity=0.083 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 30 SLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 30 ~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.+++.|.... ...+..|++.-.....|.+.| ++++.++|++||+++++|..+.++......+.-...++ ..|+
T Consensus 201 ~l~~~~~~~~--~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDi 277 (451)
T PRK07678 201 EIDRVMTWEL--SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDI 277 (451)
T ss_pred HHHHHHHhcC--CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCE
Confidence 3566665321 122445666555555677766 89999999999999999999966544332211111233 3798
Q ss_pred eeeecccccccc-cceEEEEEeCchhHHhhhccCCcc--ccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 106 FSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEY--LKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 106 ~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+++ .|.+++. ...|.+.++++ .. +.+.....+ ....+ + -++-+..+++..++++.+..+
T Consensus 278 vt~--gK~lggG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~h~~------------T-~~gnp~~~aaa~a~l~~l~~~- 339 (451)
T PRK07678 278 ITM--AKGITSAYLPLSATAVKKE-IY-EAFKGKGEYEHFRHVN------------T-FGGNPAACALALKNLEIMENE- 339 (451)
T ss_pred EEe--ecccccCCcceeEEEEcHH-HH-HHHhccCcccccccCC------------C-CCcCHHHHHHHHHHHHHHHhC-
Confidence 877 7988764 35777777654 32 333211100 00000 1 111122334444555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecC-C-CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFP-R-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
.+.++..++.++|++.|.++ ....++.. . ...++.+.+..... ...+.+ ......+...+.+
T Consensus 340 --~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~---------~~~~~~----~~~a~~i~~~l~~ 404 (451)
T PRK07678 340 --NLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKE---------TKEPAD----NDKVASVVAACKE 404 (451)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCc---------ccCcCc----hHHHHHHHHHHHH
Confidence 45666667777777777532 12221111 1 23344454432100 000001 1234567778888
Q ss_pred cCcEEEEEe---EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHA---VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~---~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|.+. .+. +..+..++|++++ ...|++|||.+++++.+.+.++
T Consensus 405 ~Gv~~-~~~g~~v~~~~~~lrl~Pp-l~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 405 KGLII-GKNGDTVAGYNNVLTLSPP-LVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCcEE-eecCccccCCCCEEEEECC-CcCCHHHHHHHHHHHHHHHHhc
Confidence 88544 321 1233578999966 4689999999999999888664
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-09 Score=96.86 Aligned_cols=234 Identities=11% Similarity=-0.009 Sum_probs=135.2
Q ss_pred ceecCCCCCCEEEEecCCCCCc---ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSY---GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~---~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++++.+ ..+++++++... .+.+++++..+|++|.+.+-++|.++|+++++ +++
T Consensus 114 ~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~Ii 182 (360)
T PRK07392 114 LRAFGAT---VKELPLPLDQPSPGLTLRLQTLPPQLT-------PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVV 182 (360)
T ss_pred HHHcCCe---EEEEecccccCCcccccCHHHHHHhcc-------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEE
Confidence 4567777 999999865432 245555544321 14478888899999999999999999999985 777
Q ss_pred ecccccccccChhhh--hhhcCCCCCCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFR--HFIDGVEGADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~--~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++........... ....... -=++..|..|.++. ..-+|+++. ++..++........ ..
T Consensus 183 DE~y~~~~~~~~~~s~~~~~~~~~-~vi~i~S~SK~~~l~GlRiG~~v~-~~~~~~~~~~~~~~----~~---------- 246 (360)
T PRK07392 183 DEAFMDFLPPDAEQSLIPCLAEYP-NLIILRSLTKFYSLPGLRLGYAIA-HPDRLQRWQQWRDP----WP---------- 246 (360)
T ss_pred ECchhhhccCccccchHHHhhcCC-CEEEEEechhhhcCCchheeeeeC-CHHHHHHHHhhCCC----CC----------
Confidence 999865543211000 0011100 11456799999984 456777765 44344332111100 00
Q ss_pred CceeccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
...+...++...+.. +..+...+...+..+.+.+.|+.++++.+. ++..+.+.+.+...
T Consensus 247 ---------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~~---------- 306 (360)
T PRK07392 247 ---------VNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQGS---------- 306 (360)
T ss_pred ---------CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCCC----------
Confidence 112223333333332 233444556667778888999888888775 34555554443321
Q ss_pred ccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++...+. +.|.....+.... +.+++|+++.. .++.++|.++|+.+.
T Consensus 307 --------------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~----~~~~~~l~~al~~~~ 357 (360)
T PRK07392 307 --------------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT----EAENQRLLEALAAIL 357 (360)
T ss_pred --------------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC----HHHHHHHHHHHHHHh
Confidence 135666654 4554444333332 34699999553 456678888887654
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=100.93 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
+++.|++.|.... .....+++.-. ....|.+.| +++|.++|++||+++++|.+|.+.......+.....++
T Consensus 192 ~l~~l~~~i~~~~---~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv- 267 (429)
T PRK06173 192 AIEPLQDLLEQKG---DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGV- 267 (429)
T ss_pred HHHHHHHHHHhCC---CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCC-
Confidence 4677788886321 12445555543 444566533 88999999999999999999955322222211111233
Q ss_pred CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCC--ccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 102 GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNP--EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
..|+++ ..|.+++.+ .++.++.+++ .. +.+.... .+.... ++ .+-+..+.+..++++.+
T Consensus 268 ~PDiv~--~gK~l~gG~~p~~a~~~~~~-i~-~~~~~~~~~~~~~~~-------------T~-~g~p~~~aaa~a~l~~i 329 (429)
T PRK06173 268 VPDIMC--IGKALTGGYLTLSATITTEA-IA-QTICSGEAKCFMHGP-------------TF-MANPLACAIAAESIRLL 329 (429)
T ss_pred CCCEEE--eehhhhCCccccceEEecHH-HH-HHHhcCCCCccccCC-------------CC-CcCHHHHHHHHHHHHHH
Confidence 378777 579886542 3555555543 32 3322110 111110 00 11223344555556555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
..+ ...++..++.++|++.|+++.++..+.. -...++.+.+.... ....+.+.
T Consensus 330 ~~~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~----------------------~~~~i~~~ 384 (429)
T PRK06173 330 LES---PWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV----------------------NMATLQPR 384 (429)
T ss_pred HhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc----------------------cHHHHHHH
Confidence 332 3477778888889888875433332222 13445556664321 12356777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+.++|. ++.+. + .+||+.+. .-.|++|++.++++|.+.+....+
T Consensus 385 l~e~Gi-~v~~~---g-~~l~~~Pp-l~it~~ei~~~~~~l~~~l~~~~~ 428 (429)
T PRK06173 385 FVEHGI-WVRPF---G-KLVYIMPP-FIISPDELSQLTSGLLRVLKQEYN 428 (429)
T ss_pred HHHCCe-EEEec---C-CEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 888875 44332 2 48999955 679999999999999999877654
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-09 Score=98.38 Aligned_cols=216 Identities=12% Similarity=0.014 Sum_probs=125.3
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...|++.-.....|.+.| +++|.++|++||+++++|.+|.++......+.....++ ..|++++ .|.+++.++.
T Consensus 223 iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~~--gK~l~gG~pi 299 (457)
T PRK05639 223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV-KPDLIIF--GKGVASGMGL 299 (457)
T ss_pred eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCC-CCCEEEe--chhhcCCCcc
Confidence 445666555555676655 88999999999999999999975433333211111234 3898884 7998866667
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|++..+++ .. +.+. ..+.. ++ ++-+..+.+..++++.+.. +...++..++.++|++.
T Consensus 300 ~av~~~~~-i~-~~~~--~~~~~---------------T~-~g~p~~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~ 356 (457)
T PRK05639 300 SGVIGRKE-LM-DLTS--GSALL---------------TP-AANPVISAAAEATLEIIEE---ENLLKNALKVGEFIKKR 356 (457)
T ss_pred eeEEehHH-HH-hhcC--CCccc---------------CC-CcCHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHH
Confidence 77776544 32 2211 11111 11 1112223344445554433 34566666788888888
Q ss_pred HcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 201 VGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 201 L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
|+++ .+..++... ...++.+.+..... .+ + ......+.+.+.++|.+ +.+. ..+..++|
T Consensus 357 L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~-----------~~-~----~~~~~~~~~~~~~~Gv~-~~~~-g~~~~~lr 418 (457)
T PRK05639 357 LLEMKESFEVIGDVRGKGLMIGVEIVKENG-----------KP-D----PELTGKICWRAFELGLI-LPSY-GMFGNVIR 418 (457)
T ss_pred HHHHHHhCCCEEeeccceeEEEEEEecCCC-----------CC-C----HHHHHHHHHHHHhCCeE-Eeec-CCCCCEEE
Confidence 8763 233333221 12334444432110 00 0 22335677778888854 4332 11246899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
++++ ...|++|+|.++++|.+.+..+.
T Consensus 419 ~~Pp-l~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 419 ITPP-LVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred EeCC-CccCHHHHHHHHHHHHHHHHHHH
Confidence 9966 67999999999999999987763
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-09 Score=98.50 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=123.3
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...|++.-.....|.+.| +++|.++|++||+++++|.++.+.........-...++ ..|++++ .|.+++....
T Consensus 208 iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv-~pDi~t~--gK~l~~G~p~ 284 (445)
T PRK08593 208 VACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI-TPDLMSF--GKSLAGGMPM 284 (445)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC-CCCEeee--cccccCCccc
Confidence 456777767777788777 99999999999999999999865433322111001123 2686654 7887753446
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|++..+++ .. +.+. ...+... .++.+..+.+..++++.+..+ +..++..++.++|++.
T Consensus 285 gav~~~~~-i~-~~~~-~~~~~~T----------------~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~ 342 (445)
T PRK08593 285 SAIVGRKE-IM-ESLE-APAHLFT----------------TGANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKR 342 (445)
T ss_pred EEEEEcHH-HH-hhhc-cCCCCCC----------------CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHH
Confidence 66666533 33 3321 1111111 011122334445555555332 4566777777777777
Q ss_pred HcCC-CCeEEecC-CC-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 201 VGSD-KRFEVVFP-RH-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 201 L~~~-~~~~v~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
|+++ ....++.. .. ...+.+.+...... .... ......+...+.++|.+. .+. +..++|
T Consensus 343 L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~-----------~~~~---~~~~~~~~~~~~~~Gv~~-~~~---~~~~lr 404 (445)
T PRK08593 343 FDQWVSKYNFVGDVRGYGLSIGIDIVSDKKL-----------KTRD---NEAALKICNYCFEHGVVI-IAV---AGNVLR 404 (445)
T ss_pred HHHHHhcCCcEEEEeccceEEEEEEecCCCc-----------CCCc---HHHHHHHHHHHHHCCeEE-ecc---CCCEEE
Confidence 7653 12222222 11 22333433321000 0000 223356777888888544 221 246899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
++++ ...|++||+.+++++.+.+..+.
T Consensus 405 ~~p~-l~~t~~~id~~~~~l~~~l~~~~ 431 (445)
T PRK08593 405 FQPP-LVITYEQLDTALNTIEQAFTALE 431 (445)
T ss_pred EECC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 9965 67999999999999999987764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=98.68 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
+++.+++++.+++ .+|-+.+++|++..+.||++|+++||++|+.++||.+.+.+.. .+-.. .+||++
T Consensus 151 ~~~~~~~~i~~~t------~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-~~pL~------lGADIV 217 (409)
T KOG0053|consen 151 DLKKILKAIKENT------KAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-QDPLP------LGADIV 217 (409)
T ss_pred hHHHHHHhhccCc------eEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-cChhh------cCCCEE
Confidence 3577778877754 4899999999999999999999999999999999999977632 22111 259999
Q ss_pred eeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHH
Q 046506 107 SLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLR 184 (310)
Q Consensus 107 ~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (310)
+-|..|++++-.. .|.+..+.++..++..... .++.+ -..++.+|..++ |...+.
T Consensus 218 ~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~-~~lg~--------------------~~~p~~~~ll~R--glktl~ 274 (409)
T KOG0053|consen 218 VHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ-EDLGW--------------------CEDPFDLFLLSR--GLKTLH 274 (409)
T ss_pred EEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH-HHhcC--------------------CCCHHHHHHHhc--Ccchhh
Confidence 9999999997422 3455555454433332111 11111 123444554443 556778
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCeEE
Q 046506 185 HFLRSHVNMAKLFERLVGSDKRFEV 209 (310)
Q Consensus 185 ~~~~~~~~~a~~l~~~L~~~~~~~v 209 (310)
-++++..+++..+++.|.+.|.++-
T Consensus 275 lRi~~~~ena~~~A~~Le~~~~v~k 299 (409)
T KOG0053|consen 275 LRINKHSENALKIALLLEAHPKVKK 299 (409)
T ss_pred hhHHHHHHHHHHHHHHhhhCCceeE
Confidence 8899999999999999998888873
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=100.94 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=130.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
-|++++++.|.+.. .....|++....++.|.+.| +++|.++|++||+++++|.+|.+. ...........++
T Consensus 182 ~d~~~l~~~i~~~~---~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~- 256 (426)
T PRK00062 182 NDLEAVEELFEEYG---DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGV- 256 (426)
T ss_pred CCHHHHHHHHHhCC---CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCC-
Confidence 37899999986521 13457777777788899988 999999999999999999999744 2221111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|++ +..|.+++....|++.. +++.. +.+.. ...+.... .++-+..+.++.++++.+..
T Consensus 257 ~pDi~--~~gK~l~~G~p~ga~~~-~~~i~-~~~~~~~~~~~~~T---------------~~~~p~~~aaa~a~L~~~~~ 317 (426)
T PRK00062 257 TPDLT--TLGKIIGGGLPVGAFGG-RREIM-EQLAPLGPVYQAGT---------------LSGNPLAMAAGLATLKLLKE 317 (426)
T ss_pred CcchH--hhhhHhhCCCcceeeeE-HHHHH-HhhccCCCceeccc---------------CcCCHHHHHHHHHHHHHHhc
Confidence 25654 45698875333566644 44333 33321 11111111 11222334445556665533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+ +..++..++.+++++.|+++ -++.........++.+.+.+..... ....... + ......+.+.+
T Consensus 318 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~------~~~~~~~--~-~~~~~~i~~~l 385 (426)
T PRK00062 318 P---GFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTN------YADAKKS--D-TERFARFFHAM 385 (426)
T ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcc------hhhhccc--c-HHHHHHHHHHH
Confidence 3 45566666777777766532 1332211223445555554321000 0000000 0 12234677788
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++|. ++.+. +...+|++ ...|++||+.++++|++.+..+
T Consensus 386 ~~~Gv-~v~~~---~~~~~~~~---~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 386 LDEGV-YLAPS---QFEAGFVS---AAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred HHCCe-EeecC---CcCceeee---ccCCHHHHHHHHHHHHHHHHhh
Confidence 88874 44443 22356665 4579999999999999988654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-09 Score=97.03 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh----HHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL----KPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl----~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.|.... ..+..|++....++.|.+.|. ++|.++|++||+++++|.+|.+. ...........++ .
T Consensus 187 d~~~l~~~l~~~~---~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv-~ 261 (433)
T PRK00615 187 DFQIFQTVMNSLG---HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHV-K 261 (433)
T ss_pred CHHHHHHHHHhcC---CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCC-C
Confidence 6799999986432 124577777777888988874 59999999999999999999543 2222111111233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|+++ ..|.+++....|++..+++ .. +.+.. .+.+...+ ..+-+..+.+..++++.+..+
T Consensus 262 PDi~~--~gK~lggG~p~~av~~~~~-i~-~~~~~~~~~~~~~T---------------~~g~p~~~aa~la~L~~i~~~ 322 (433)
T PRK00615 262 PDITV--YGKILGGGLPAAAVVAHKS-IM-DHLAPEGTIFQAGT---------------LSGNPLAMAAGKASINLCREQ 322 (433)
T ss_pred CCeEE--EcccccCCcceeeeeecHH-HH-hhhcCCCCcccCCC---------------CcccHHHHHHHHHHHHHHhcc
Confidence 78766 5898875443566655443 32 33211 11111111 011123344555566655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHH-HHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEE-RINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l 257 (310)
..+++..++.++|.++|++. .++.+.......++.+.+...... +..+.. .-.+....+...|
T Consensus 323 ---~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l 389 (433)
T PRK00615 323 ---GFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPN----------NLAEAQLSDIEAFQTFYQSA 389 (433)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCC----------ChHHHhhCCHHHHHHHHHHH
Confidence 34566666666665555431 133322112334455555432100 000000 0022335677888
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++|. ++.+..+.. ..++ ...|++|||++++++.+.++++
T Consensus 390 ~~~Gv-~~~~~~~~~-----~~ls-~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 390 FSKGV-YLSPSPFEA-----SFLS-SAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred HHCCe-eecCccccc-----ccee-cCCCHHHHHHHHHHHHHHHHHH
Confidence 88884 444321111 1222 4468999999999999998775
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-09 Score=98.40 Aligned_cols=216 Identities=10% Similarity=0.022 Sum_probs=122.5
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...|++.-.....|.+.| +++|.++|++||+++++|.++.++......+.....++ ..|.++++ |.+++.+..
T Consensus 220 iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv-~PDiv~~g--K~l~~G~Pi 296 (443)
T PRK06058 220 LAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGI-VPDLITTA--KGIAGGLPL 296 (443)
T ss_pred eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCC-CCCEEEEc--ccccCCCcc
Confidence 445555555555676655 99999999999999999999876544332221111233 36888884 998865557
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|.+..+++ .. +.+.. ..... ++ ++-+....+..++++.+.. ++..++..++.++|.++
T Consensus 297 ~av~~~~~-i~-~~~~~--~~~~~--------------T~-~gnpl~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~ 354 (443)
T PRK06058 297 SAVTGRAE-IM-DAPHP--GGLGG--------------TY-GGNPVACAAALAAIETIEE---DDLVARARQIEALMTDR 354 (443)
T ss_pred EEEEEcHH-HH-hhccC--CCCCC--------------CC-CCCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHH
Confidence 77776543 32 32211 00000 11 1111223344445544433 34566666777788887
Q ss_pred HcCC-CCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 201 VGSD-KRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 201 L~~~-~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
|+++ ....++.. ....++.+.+..... ..+. ......+...+.++|.+ +.+... ...+||
T Consensus 355 L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~------------~~~~---~~~~~~l~~~~~~~Gv~-~~~~~~-~~~~lr 417 (443)
T PRK06058 355 LRALAAEDDRIGDVRGRGAMIAIELVKPGT------------TEPD---AELTKALAAAAHAAGVI-VLTCGT-YGNVIR 417 (443)
T ss_pred HHHHHhhCCcEEeeeccceEEEEEEecCCC------------CCCc---HHHHHHHHHHHHHCCeE-EeccCC-CCCEEE
Confidence 7653 12222211 233445555533100 0000 22345677777788854 433211 135899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+.++ .-.|++||+.++++|++.+.+
T Consensus 418 ~~Pp-l~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 418 LLPP-LVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred EECC-CccCHHHHHHHHHHHHHHHHh
Confidence 9855 679999999999999988754
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-09 Score=98.19 Aligned_cols=219 Identities=10% Similarity=0.051 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++++++.|... +..+..+++.-.....|.+. .+++|.++|++||+++++|.++.+.......+.--..++ ..
T Consensus 212 ~~~~~~~i~~~---~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~P 287 (443)
T PRK08297 212 LAQARAAFERH---PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-RP 287 (443)
T ss_pred HHHHHHHHHhC---CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC-CC
Confidence 45566666542 12355677766666667763 399999999999999999999965543332211111233 37
Q ss_pred CeeeeecccccccccceEEEEEeCch-hHH-hhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPS-DLV-NSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~-~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
|++++ .|.+ | .|.+++.++- .+. ..+. .+.+... ++ ++-+....+..++++.+..
T Consensus 288 Div~~--gK~l--~--~~a~l~~~~i~~~~~~~~~-~~~~~~~--------------T~-~gnpl~~aaa~a~L~~l~~- 344 (443)
T PRK08297 288 DIVAF--GKKT--Q--VCGIMAGRRVDEVEDNVFA-VSSRINS--------------TW-GGNLVDMVRARRILEVIEE- 344 (443)
T ss_pred CEEEe--cccc--c--ccceecchHHHHhhhhhcc-CccccCC--------------CC-CccHHHHHHHHHHHHHHHh-
Confidence 98875 6876 3 3444444431 110 1110 0000000 11 1111122333344444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CCe--EEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KRF--EVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~~--~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
++..++..++.+++++.|+++ |.+ .+. ....++.+.+.. ......+..
T Consensus 345 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr--g~G~~~~i~~~~----------------------~~~~~~~~~ 398 (443)
T PRK08297 345 --DGLVENAARQGEYLLARLEELAAEFPAVVSNVR--GRGLMCAFDLPT----------------------TADRDEVIR 398 (443)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeee--ccceEEEEEecC----------------------HHHHHHHHH
Confidence 356667777777777777653 322 221 234455566543 122346777
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.++|.+. .+. +...+||+++ ...|++|+|.++++|.+.+..+
T Consensus 399 ~l~~~Gvl~-~~~---~~~~lr~~P~-l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 399 RLWEEGVLV-LPC---GERSIRFRPA-LTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHHCCEEE-ecC---CCCeEEEECC-ccCCHHHHHHHHHHHHHHHHhh
Confidence 787887543 322 3357999855 6789999999999999988765
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=100.36 Aligned_cols=234 Identities=15% Similarity=0.077 Sum_probs=128.4
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.+|+++++.+.+|+++ + .+.++++..++|++|.+.+ +++|+++|++||+++++|.+++.....
T Consensus 157 ~~~v~~~~~~~~~~d~~~------~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~ 224 (409)
T PRK07590 157 IVYLPCTAENNFVPELPE------E------KVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISD 224 (409)
T ss_pred eeEeecccccCCcccCcc------c------CceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccC
Confidence 788888754434444321 1 2446666788899999877 556888899999999999998754321
Q ss_pred ChhhhhhhcCCCCC---Ceeeeecccccccc-cceEEEEEeCchhHHhhhccC-----CccccccccccccccCCCCcee
Q 046506 90 CPEFRHFIDGVEGA---DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTN-----PEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 90 ~~~~~~~~~~~~~~---D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~-----~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
...... ...+... -++..|+.|.++.| .-+|+++. ++..+....... ..+..... ...
T Consensus 225 ~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~-----------~~~ 291 (409)
T PRK07590 225 PSLPHS-IYEIEGARECAIEFRSFSKTAGFTGTRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQS-----------TKF 291 (409)
T ss_pred CCCCcc-hhhCCCcccceEEEecCccccCCcCceeEEEEc-CHHHhhhccccchhhhHHHHHHHHh-----------hcc
Confidence 111111 1111111 24567999999744 44676665 443432100000 00000000 000
Q ss_pred ccCCCcchHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 161 TLSRRFRSLKLWFVLRNY---GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.+ ...+...++...+ +...+++..++..+..+.+.+.|.+. ++++..+..+..+.+.+++..
T Consensus 292 -~~--~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~~----------- 356 (409)
T PRK07590 292 -NG--VSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGM----------- 356 (409)
T ss_pred -cC--cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCcceEEEEECCCCC-----------
Confidence 00 0111222222222 23456667777788888899999886 677654445556666665420
Q ss_pred ccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINAS-GKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++...+.++ |.....+... .+.+++|+++. .++++++..++.|.+.
T Consensus 357 ----~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 357 ----S-------SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF---GSRENVLEAMERIKKA 408 (409)
T ss_pred ----C-------HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc---CCHHHHHHHHHHHHhh
Confidence 0 13455566544 5433333222 23569999942 4688999998888764
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-09 Score=96.93 Aligned_cols=238 Identities=9% Similarity=-0.019 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+++|+++|+.. ....+..|++.-...+.|.+.| +++|.++|++||+++++|.+|.++......+.-...++ ..
T Consensus 200 ~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~P 276 (451)
T PRK06062 200 LAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VP 276 (451)
T ss_pred HHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CC
Confidence 67888888532 1123456777777777899888 99999999999999999999986544333221112234 37
Q ss_pred Ceeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|++++ .|.+++.+ ..|.+..+++ .. +.+... .+... .++. +-+..+.+..++++.+..+
T Consensus 277 Di~t~--gK~lggG~~Pigav~~~~~-i~-~~~~~~-~~~~~-------------~T~~-gnpl~~Aaa~a~L~~l~~~- 336 (451)
T PRK06062 277 DLITF--AKGVNSGYVPLGGVAISEA-IA-ATFADR-PYPGG-------------LTYS-GHPLACAAAVATINAMEEE- 336 (451)
T ss_pred Ceeee--chhhhcCCcCcEEEEEcHH-HH-HHhccC-CCCCC-------------CCCC-CCHHHHHHHHHHHHHHHhc-
Confidence 87765 79888642 4667766653 33 333211 11100 0111 1122334445555555333
Q ss_pred HHHHHHHHHHHH-HHHHHHHcCC-CCeEEecC-C-CceEEEEEEcCCcchhhhhhhhccccchhHHHH-HHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMA-KLFERLVGSD-KRFEVVFP-R-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI-NEFNRELLESI 257 (310)
Q Consensus 183 ~~~~~~~~~~~a-~~l~~~L~~~-~~~~v~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l 257 (310)
+..++..++. +++++.|+++ ..+.++.. . ...++.+.+..... ...+.+.... ......+.+.+
T Consensus 337 --~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l 405 (451)
T PRK06062 337 --GIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRE---------TREPLAPYGASSAAMAAVKAAC 405 (451)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEccccc---------ccCCCcccchhhHHHHHHHHHH
Confidence 3555555565 4666666543 11222111 1 12234444432100 0000111000 12345677788
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.++|.+. .+ ..+.+|++++ ..+|++|||.+++++++.+..+.
T Consensus 406 ~~~Gvl~-~~----~~~~lrl~pp-l~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 406 KERGLLP-FV----NGNRIHVVPP-CTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred HHCCcEE-ee----cCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHhh
Confidence 8888653 22 1347999855 56899999999999999987764
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-09 Score=99.21 Aligned_cols=238 Identities=13% Similarity=0.100 Sum_probs=137.9
Q ss_pred ceecCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTT-KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~-~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++..|.. ++.+|.. ++ ++.+|++.+++.+.+.+. +..+++...++|++|.+.+ +++|+++|++||++++
T Consensus 159 ~~~~g~~---~~~v~l~~~~-~~~~d~~~l~~~l~~~~~---~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI 231 (423)
T PLN02397 159 FRDAGVP---VRTYRYYDPK-TRGLDFDGLLEDLKAAPD---GSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPF 231 (423)
T ss_pred HHHcCCe---EEEeecccCc-CCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 3456666 8888873 33 368999999998865311 2457777888999999866 6678889999999999
Q ss_pred eecccccccccCh--hhhhh--hcCCCCCC-eeeeecccccccc-cceEEEE--EeCchhHHhhhccCCccccccccccc
Q 046506 79 VDAAYAGSACICP--EFRHF--IDGVEGAD-SFSLNAHKWFFTT-LDCCCLW--VKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 79 vD~a~~~~~~~~~--~~~~~--~~~~~~~D-~~~~~~hK~l~~p-~g~g~l~--v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
+|.++........ ..... ... .+-. ++..|+.|.++.| .-+|+++ ..++..+...............
T Consensus 232 ~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~---- 306 (423)
T PLN02397 232 FDSAYQGFASGDLDADAQSVRMFVE-DGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMY---- 306 (423)
T ss_pred EecccCCccCCchhhhhHHHHHHHh-cCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhccc----
Confidence 9999865543110 01110 111 1111 4567999998853 4567764 3344322111100000000000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhCH-----H---HHHHHHHHHHHHHHHHHHHHcCCCC----eEEecCCCceEE
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYGV-----A---NLRHFLRSHVNMAKLFERLVGSDKR----FEVVFPRHFAVV 218 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~---~~~~~~~~~~~~a~~l~~~L~~~~~----~~v~~~~~~~~v 218 (310)
.+ .......++...+.. + .++++.++..+..+.+.+.|+++ + +.+. .|+.+..
T Consensus 307 -----------~~--~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~-~p~gg~f 371 (423)
T PLN02397 307 -----------SN--PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR-GSPGDWSHI-TKQIGMF 371 (423)
T ss_pred -----------CC--CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcc-cCCceEE
Confidence 00 011112222222221 1 25667778888889999999887 4 5443 3455444
Q ss_pred EEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 219 CFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.|.-.+ .++.++|.++..+++.+ .+ |+++.+ .+++.++.+++.|+
T Consensus 372 l~~~l~--------------------------~~~~~~Ll~~~~V~v~~-----~~--Ri~~~~--~~~~~i~~~~~~i~ 416 (423)
T PLN02397 372 SFTGLN--------------------------KEQVDRMTKEYHIYMTR-----DG--RISMAG--LSSKNVPYLADAIH 416 (423)
T ss_pred EecCCC--------------------------HHHHHHHHHhCCEEECC-----CC--eEEEee--CCHHHHHHHHHHHH
Confidence 332111 23556676665556542 22 999763 78899999999999
Q ss_pred HHHH
Q 046506 299 EHLE 302 (310)
Q Consensus 299 ~~~~ 302 (310)
+++.
T Consensus 417 ~~~~ 420 (423)
T PLN02397 417 AVVT 420 (423)
T ss_pred HHHh
Confidence 8863
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=94.92 Aligned_cols=234 Identities=14% Similarity=0.056 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++.+++.|..... +..+..|++.-..+.+|.+.| +++|.++|++||+++++|.+|.+.............++ ..
T Consensus 189 ~~~~~~~l~~~~~-~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~-~p 266 (443)
T PRK08360 189 VEYIKEKFEGEVY-AEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV-EP 266 (443)
T ss_pred HHHHHHHHHhccC-CCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC-CC
Confidence 4456666643211 123456666656677888766 88999999999999999999975433332111001122 25
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|++++ .|.++.....|++..+ ++.. +.+... .+.. ++ ++-+.....+.++++.+..+
T Consensus 267 Diitl--sK~l~~G~pigav~~~-~~i~-~~~~~~-~~~~---------------T~-~~~p~~~aaa~a~l~~l~~~-- 323 (443)
T PRK08360 267 DIITL--GKPLGGGLPISATIGR-AEIM-DSLPPL-AHAF---------------TL-SGNPVASAAALAVIEEIEEK-- 323 (443)
T ss_pred CEEEe--cccccCCceeEEEEEc-HHHH-hhhcCC-CCCC---------------CC-CcCHHHHHHHHHHHHHHHHc--
Confidence 76655 8998854446776654 3333 332110 0110 00 11112234444555544332
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSHVNMAKLFERLVGSD-KRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+..++..++.+++++.|+++ ....++.. ....++.+.+..... + ... + ......+...+.+.
T Consensus 324 -~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~-----------~-~~~-~-~~~~~~~~~~l~~~ 388 (443)
T PRK08360 324 -NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRE-----------T-KER-A-YEEAAKVVWRAWEL 388 (443)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCc-----------c-cCc-c-HHHHHHHHHHHHHC
Confidence 35667777777787777653 11222221 123344555532100 0 000 0 12234667778888
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
|.+ +.+. ...++|++++ ..+|++||+.+++++.+.+..+.+
T Consensus 389 Gi~-~~~~---~~~~lr~~P~-l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 389 GLI-VTFF---SGNVLRIQPP-LTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred CeE-Eeec---CCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 854 3321 2468999955 679999999999999999987654
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-09 Score=96.87 Aligned_cols=238 Identities=14% Similarity=0.109 Sum_probs=133.0
Q ss_pred ceecCCCCCCEEEEec-CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKT-TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~-~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++.+|+. ++.+|. +++ ++.+|+++|++++.+... +..++++...+|++|.+.+ +++|+++|++||++++
T Consensus 137 ~~~~g~~---~v~v~~~~~~-~~~~d~~~l~~~~~~~~~---~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 209 (396)
T PRK09257 137 FEAAGLE---VKTYPYYDAA-TKGLDFDAMLADLSQAPA---GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPF 209 (396)
T ss_pred HHHcCCc---EEEEeccccc-cCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 4567777 999998 333 358999999999874211 1346666888999999866 6678899999999999
Q ss_pred eecccccccccCh-hhhhh--hcCCCCCCeeeeeccccccc-ccceEEEEE-e-CchhHHhhhccCCccccccccccccc
Q 046506 79 VDAAYAGSACICP-EFRHF--IDGVEGADSFSLNAHKWFFT-TLDCCCLWV-K-DPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 79 vD~a~~~~~~~~~-~~~~~--~~~~~~~D~~~~~~hK~l~~-p~g~g~l~v-~-~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
.|.++........ ..... ......--+++.|..|.++. ..-+|++++ . ++..+.+.............
T Consensus 210 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 283 (396)
T PRK09257 210 LDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNY------ 283 (396)
T ss_pred EeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhc------
Confidence 9999865432111 11110 01110112567999999985 466777764 3 33322211100000000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEE
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYG--------VANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFR 221 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~ 221 (310)
.. ...+...++.+.+. ...+++..++..+..+.+.+.|++.. ++.+. .|..+...|
T Consensus 284 --------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~-~p~gg~~~w- 350 (396)
T PRK09257 284 --------SN---PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFI-ARQRGMFSY- 350 (396)
T ss_pred --------CC---CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cccceEEEe-
Confidence 00 01111111222221 12344566777778888888887752 24443 344444333
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+.-+ .+....+.++.++++.+. + |+++++ .++++|+.+++.|+++
T Consensus 351 ~~l~-------------------------~~~~~~l~~~~~V~~~p~-----~--ri~~~~--~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 351 SGLT-------------------------PEQVDRLREEFGVYAVGS-----G--RINVAG--LNESNIDYVAEAIAAV 395 (396)
T ss_pred cCCC-------------------------HHHHHHHHHcCCEEEcCC-----C--eEEEee--CCHHHHHHHHHHHHhh
Confidence 2211 122333444434555442 2 999763 7888999999999864
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-09 Score=90.53 Aligned_cols=261 Identities=14% Similarity=0.138 Sum_probs=172.1
Q ss_pred ecCCCCCC-EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 5 IVGIDVKN-FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 5 ~~g~~~~~-v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+-|+..++ .+.|.+.+++ -.+..+++-+.|.++.+ -..+|+.+.....+|...++.+|..--+..|+.+=-|=||
T Consensus 178 lhG~~~e~sm~~iePREGE-etlRteDILd~IEkngD---eiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAH 253 (465)
T KOG3846|consen 178 LHGISPENSMIQIEPREGE-ETLRTEDILDTIEKNGD---EIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAH 253 (465)
T ss_pred hcCCChHHheEEecccccc-cchhHHHHHHHHHhcCC---eEEEEEeecceeecccccchhhhhhcccCCCcEechhhhh
Confidence 33444332 3456666543 36888999998877643 3568888999999999999999997666679999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccc---cc--cCCCC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK---QV--VDYKD 157 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~---~~--~~~~~ 157 (310)
+.+-.+...+.. ++|+-+.+..|.+++ +.|.|.++|..+.. ....+...++.....+... .. +..+.
T Consensus 254 AvgNVpL~LHdW------gVDFACWCSYKYlnaGaGgIgGlFvHekh~-~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa 326 (465)
T KOG3846|consen 254 AVGNVPLQLHDW------GVDFACWCSYKYLNAGAGGIGGLFVHEKHT-KESLPRLAGWWGHDPSKRFQMDNVLELIPGA 326 (465)
T ss_pred hhcCCceEEeec------CCceEEEeeecccccCCCccceeeeehhhh-cchhhHHhhhccCCcchhhhhccccccCccc
Confidence 988776643322 699999999999986 78899999987743 2322222223222211100 00 11111
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-----------EecC----CCceEEEE
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE-----------VVFP----RHFAVVCF 220 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-----------v~~~----~~~~~v~~ 220 (310)
.++..+-+ ....++..+++......+.+.+++..-++-|+...++...|.. ++.| .+...++.
T Consensus 327 ~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl 406 (465)
T KOG3846|consen 327 LGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSL 406 (465)
T ss_pred cccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEE
Confidence 11122211 1335667778877777889999999999888888777654443 2222 13445555
Q ss_pred EEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 221 RVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.+..+. ..+...|.++|.+. +-...++||++..+.||+-.||-.++++|.++
T Consensus 407 ~Fssp~------------------------~~vfqeL~krGv~~----DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~ 458 (465)
T KOG3846|consen 407 YFSSPT------------------------PKVFQELHKRGVIG----DKRRPNVIRVAPVPLYNTFSDVYIFVNALNEA 458 (465)
T ss_pred EeCCCc------------------------hHHHHHHHHcCeec----cccCCCceEeecchhhccHHHHHHHHHHHHHH
Confidence 555432 34566666677432 12346789999888999999999999999998
Q ss_pred HHHH
Q 046506 301 LEAL 304 (310)
Q Consensus 301 ~~~~ 304 (310)
+..+
T Consensus 459 ~d~~ 462 (465)
T KOG3846|consen 459 MDKL 462 (465)
T ss_pred HHHh
Confidence 8654
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-09 Score=95.35 Aligned_cols=229 Identities=14% Similarity=0.068 Sum_probs=126.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+...|+. ++.+|.++.+.+.+|+++.+ + +. +.++++...+|++|.+.+ +++|+++|++||+++++
T Consensus 126 ~~~~g~~---v~~v~~~~~~~~~~d~~~~~--~-~~------~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 126 AIASRAK---VLLMPLTKENDFTPSLNEKE--L-QE------VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred HHhcCCE---EEEeecccccCCcCCcchhh--h-cc------ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 4566776 99999986545666655432 2 11 346777788999999866 66778889999999999
Q ss_pred ecccccccccChhhhhhhc-----CC-C-CCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFID-----GV-E-GADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~-----~~-~-~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
|.+++-.....+ ...... +. . .-=++..|..|.++.| .-+|+++. ++..+....... .+.....
T Consensus 194 DE~Y~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~-~~~~~~~~~~~~-~~~~~~~----- 265 (374)
T PRK05839 194 DECYSEIYENTP-PPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAG-DASILKKYKAYR-TYLGCAS----- 265 (374)
T ss_pred ccchhhcccCCC-CCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEec-CHHHHHHHHHHH-hhcCCCC-----
Confidence 999864321111 111000 00 0 0115668999986554 55666654 444433221110 1111000
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhh
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~ 230 (310)
......++...+ ..+.++++.++..++.+.+.+.| ++. .++.+..+.+.+.+.
T Consensus 266 ---------------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~~~----- 319 (374)
T PRK05839 266 ---------------PLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL----GIT--IPPATFYVWLPVDND----- 319 (374)
T ss_pred ---------------ChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCCCh-----
Confidence 111111111112 23445566666666666666654 222 233444555544321
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEe-EEC----CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHA-VLG----GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~----~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+.+ .|. .+.+. ... +.+++|+|+. .+++++...++.|++++
T Consensus 320 --------------------~~~~~~l~~~~gi-~v~pg~~f~~~~~~~~~iRis~~---~~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 320 --------------------EEFTKKLYQNEGI-KVLPGSFLGRNGIGKGYVRIALV---YDTPKLEKALEIIKTYL 372 (374)
T ss_pred --------------------HHHHHHHHHHCCE-EEeCchhhCCCCCCCCeEEEEec---CCHHHHHHHHHHHHHHh
Confidence 356666655 554 44443 222 2479999965 25889999998888765
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-08 Score=94.15 Aligned_cols=238 Identities=11% Similarity=-0.021 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
.++|++.|.+... .....|++.-...+.|.+.| +++|.++|++||+++++|.+|++.......+.....++. .
T Consensus 208 ~~~le~~~~~~~~--~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~-P 284 (460)
T PRK12403 208 ALQLEEKILELGA--ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE-P 284 (460)
T ss_pred HHHHHHHHHHhCC--CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC-C
Confidence 3567776653211 12456777777777898888 999999999999999999999766444432221112343 6
Q ss_pred Ceeeeeccccccccc-ceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 104 DSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 104 D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
|+++ ..|.+++.+ ..|.++++++ .. +.+... ..|+... + -++-+..+.+..++++.+..+
T Consensus 285 Div~--~gK~lggG~~Piga~v~~~~-i~-~~~~~~~~~~~~~~-------------T-~~gnPl~~Aaala~L~~i~~~ 346 (460)
T PRK12403 285 DTLS--IAKGLTSGYVPMGGLVLSKR-IA-EALVEQGGVFAHGL-------------T-YSGHPVAAAVAIANLKALRDE 346 (460)
T ss_pred CeEE--EcccccccccceEEEEECHH-HH-HHHhcCCCccccCC-------------C-CCCCHHHHHHHHHHHHHHHhc
Confidence 8886 579888653 5666666533 32 333211 1111100 0 011122334445556555433
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHV-NMAKLFERLVGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~-~~a~~l~~~L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+ ..++.. ++.+++++.|+++ ....++... ...++.+.+...... ..+.... ......+...+
T Consensus 347 ~---l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~---------~~~~~~~--~~~~~~~~~~~ 412 (460)
T PRK12403 347 G---VVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKAT---------RKRFANE--NDLAWRCRTIG 412 (460)
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccc---------cccccch--hHHHHHHHHHH
Confidence 3 455554 6667777766542 122222221 233444545321000 0000000 12223455667
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.++|.+.. +. ...+|+++. .-.|++|++.+++++++.+.++++
T Consensus 413 ~~~Gll~~-~~----~~~~~l~Pp-l~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 413 FEEGVIIR-ST----LGRMIMAPA-LVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred HhCCEEEE-ec----CCEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77885443 21 235899855 458999999999999999988753
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-08 Score=95.24 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
+.+.+++.+.+.......+..|++.-.....|.+.| ++++.++|++||+++++|..+.++......+.-...++ .
T Consensus 214 ~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv-~ 292 (464)
T PRK06938 214 NLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI-I 292 (464)
T ss_pred HHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC-C
Confidence 367788888643211112445555555555566654 88999999999999999999876654443222111233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++++ .|.+++.+..|.++.++. + +.+. +.+..+ ++ ++.+....+..++++.+..+
T Consensus 293 PDiv~~--gKglggG~PlsAv~~~~~--~-~~~~--~~~~~~--------------T~-~gnpla~Aaa~a~L~~l~~~- 349 (464)
T PRK06938 293 PDVVVL--SKAIGGSLPLAVVVYREW--L-DTWQ--PGAHAG--------------TF-RGNQMAMAAGSATLRYIKEH- 349 (464)
T ss_pred CCEEEe--eccccCCCceEEEeehhH--h-hccC--CCCCCC--------------CC-CcCHHHHHHHHHHHHHHHHh-
Confidence 798888 588876566787876643 2 2221 111111 11 11122333444455544333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecC-CC-ceEEEEEEcCCcchhhhhhhhcc-ccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFP-RH-FAVVCFRVSPSAVMDKLKTKYEN-SLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+..++..++.++|.+.|+++ ....++.. .. ...+.+.+...... ++.. ..+.+ ......+...+.
T Consensus 350 --~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~ 418 (464)
T PRK06938 350 --RLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGE-----PDALGHPPAN----GELASLIQRECL 418 (464)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCccc-----ccccccCCcc----HHHHHHHHHHHH
Confidence 45566667777777777654 12222222 11 23444544321000 0000 00000 123356677777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
++|.+. .+.. ....+|||.++ .-.|++||+.+++++.+.+..+.
T Consensus 419 ~~Gll~-~~~g-~~~~~l~~~Pp-l~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 419 RRGLIL-ELGG-RHGSVVRFLPP-LIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred HCCeEE-eecC-CCCCEEEEECC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 888543 3221 12468999855 67899999999999999887653
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=95.89 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEec-cCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATI-GTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
++++++.|... +.....|++.- .....|.+.| ++++.++|++||+++++|..+.+.......+.....++ .
T Consensus 208 ~~~l~~~l~~~---~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv-~ 283 (453)
T PRK06943 208 LADVRRLFAER---AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV-W 283 (453)
T ss_pred HHHHHHHHHhC---CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC-C
Confidence 46777777532 12244555554 2455566544 88999999999999999999876644443222112234 3
Q ss_pred CCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCC---ccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 103 ADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNP---EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
.|++++ .|.+++.+ ..|.+..+++ .. +.+.... .+. .. .++ ++-+....+..++++.+
T Consensus 284 PDivt~--gKgl~gG~~Pi~av~~~~e-i~-~~~~~~~~~~~~~-~~------------~T~-~gnpl~~aaa~a~L~~i 345 (453)
T PRK06943 284 PDFLCL--SKGISGGYLPLSLVLSRDA-IF-AAFYDDDVTRGFL-HS------------HSY-TGNPLACRAALATLDLF 345 (453)
T ss_pred CCeEee--ehhhccCcccceEEEEcHH-HH-HhhcccCccCCcc-CC------------CCC-CCCHHHHHHHHHHHHHH
Confidence 899888 68777652 5677777654 32 3322110 000 00 011 11122233344445444
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
.+ +...++..++.++|.+.|+++ +.+.=+.. ...++.+.+..... .. ......+..
T Consensus 346 ~~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG-~Gl~~gvel~~~~~-------------~~----~~~~~~i~~ 404 (453)
T PRK06943 346 AE---DDVLARNARKSARLRAALAPLAAHPQVRHLRQ-RGTIFAFDVALDGD-------------AA----RTFSRRFFE 404 (453)
T ss_pred Hh---cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEec-cccEEEEEEccCCC-------------cc----hHHHHHHHH
Confidence 33 345566667777777777654 33321111 22334454432100 00 223456777
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.++|.+. .+. + ..+||++. .-.|++|||.++++|.+.+..+
T Consensus 405 ~~~~~Gll~-~~~---g-~~l~~~Pp-l~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 405 AALERELLL-RPI---G-TTVYLMPP-YVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred HHHHCCcEE-Eec---C-CEEEEeCC-CcCCHHHHHHHHHHHHHHHHHH
Confidence 788888644 322 2 36999955 6799999999999999988765
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-09 Score=98.28 Aligned_cols=223 Identities=12% Similarity=0.007 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccc----cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIG-TTAITA----VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~----~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
|++++++.+.... .....|++... ....|. ..++++|.++|++||+++++|.+|.+.......+.....++
T Consensus 193 ~~~~l~~~l~~~~---~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v- 268 (427)
T TIGR00508 193 AITPLAKLMELHS---DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV- 268 (427)
T ss_pred HHHHHHHHHHhcC---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC-
Confidence 5677888886431 12345555543 333343 35699999999999999999999954333222111111233
Q ss_pred CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccC--CccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 102 GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTN--PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
..|+++ ..|.+++.. .++.++.+++ . .+.+... ..+.... ++. +.+.......++++.+
T Consensus 269 ~pDi~~--~gK~l~gG~~p~~a~~~~~~-~-~~~~~~~~~~~~~~~~-------------T~~-g~p~~~aaa~a~l~~l 330 (427)
T TIGR00508 269 VPDILC--VGKALTGGYMTLSATVTTDK-V-AQTISSGEAGCFMHGP-------------TFM-GNPLACAVAEASLAIL 330 (427)
T ss_pred CCCEEE--echhhhcCcccceEEEEcHH-H-HHHHhcCCCCccccCC-------------CCC-cCHHHHHHHHHHHHHH
Confidence 378776 489886542 3455554433 3 2333211 1111100 011 1223344445555555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
..+ +..++..++.++|++.|+++.....+... ...++.+.+.... ....+.+.
T Consensus 331 ~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~----------------------~~~~~~~~ 385 (427)
T TIGR00508 331 LEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV----------------------NVEELQKK 385 (427)
T ss_pred HhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc----------------------CHHHHHHH
Confidence 332 34677888888888888765322212111 2445566554321 01357778
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+.++|. ++.+. ...+|++++ ..+|++|||++++++++.+.
T Consensus 386 l~~~Gv-~~~~~----~~~l~~~pp-l~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 386 FVEQGV-WIRPF----GKLIYVMPP-YIITTEQLQKLTAALIEALH 425 (427)
T ss_pred HHHCCe-EEEec----CCEEEEECC-CCCCHHHHHHHHHHHHHHHh
Confidence 888885 44332 237999955 56899999999999998764
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-09 Score=94.82 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=115.3
Q ss_pred cEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhc---C-CCCCCeeeeecccccccc
Q 046506 45 PLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---G-VEGADSFSLNAHKWFFTT 117 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~---~-~~~~D~~~~~~hK~l~~p 117 (310)
+.+++++..+|++|.+.+ +++|.++|++||+++++|.+++......+....... + ...-.+++.|+.|.++.|
T Consensus 149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 228 (364)
T PRK07865 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLA 228 (364)
T ss_pred ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCC
Confidence 457777788999998866 678889999999999999999754322111000000 0 001236789999998655
Q ss_pred c-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Q 046506 118 L-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAK 195 (310)
Q Consensus 118 ~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~ 195 (310)
. -+|++ +.+++.+....... .+.... ...+...++...+. .+.+++..+...+..+
T Consensus 229 GlRiG~i-~~~~~~~~~~~~~~-~~~~~~--------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 286 (364)
T PRK07865 229 GYRAGFV-AGDPALVAELLEVR-KHAGMM--------------------VPAPVQAAMVAALGDDAHVREQRERYARRRA 286 (364)
T ss_pred ceeeEEE-ecCHHHHHHHHHHH-HhcCCC--------------------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2 35555 45554443321110 000000 01111122222332 2345666777778888
Q ss_pred HHHHHHcCCCCeEEecCCCceEE-EEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--C
Q 046506 196 LFERLVGSDKRFEVVFPRHFAVV-CFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG--G 272 (310)
Q Consensus 196 ~l~~~L~~~~~~~v~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~ 272 (310)
.+.+.|.+. ++.+. ++..+.. .+.+ +.+ ..++.+.+.+.|.....+.... +
T Consensus 287 ~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~~~-----------------------~~~~~~~l~~~gv~v~pg~~f~~~~ 340 (364)
T PRK07865 287 VLRPALEAA-GFRVD-HSEAGLYLWATR-GED-----------------------CWDTVAWLAERGILVAPGDFYGPAG 340 (364)
T ss_pred HHHHHHHHc-CCccc-CCCccEEEEEeC-CCC-----------------------HHHHHHHHHHCCEEEeCccccCcCC
Confidence 889999875 77665 3444433 2222 211 0245566667776544433222 3
Q ss_pred EeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 273 IYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 273 ~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.+++|+++.. ++++++..++.|+
T Consensus 341 ~~~iRi~~~~---~~~~~~~~~~~l~ 363 (364)
T PRK07865 341 AQHVRVALTA---TDERIAAAVERLA 363 (364)
T ss_pred CCEEEEEecC---CHHHHHHHHHHhh
Confidence 5799999663 5889999998774
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-09 Score=95.45 Aligned_cols=246 Identities=11% Similarity=0.075 Sum_probs=130.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH-----hCcE
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ-----FGIW 76 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~-----~g~~ 76 (310)
..|.. ++.+|.+.+ ++.+|+++++++++..... ...++++..++|++|...+ +++|+++|++ |+++
T Consensus 113 ~~g~~---vv~v~~~~~-~~~~d~~~l~~~~~~~~~~--~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~ 186 (388)
T PRK08637 113 RRGAE---IVTYPIFDE-DGGFDTDALKEALQAAYNK--GKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV 186 (388)
T ss_pred hcCCE---EEEecccCC-CCcCCHHHHHHHHHhhccC--CCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 45666 999998422 2368999999998732111 1345666678999998766 6667777765 8999
Q ss_pred EEeecccccccccChhhhh----hhcCCCCCCeee-eecccccccc-cceEEEEEeC-----chhHHhhhccC-Cccccc
Q 046506 77 VHVDAAYAGSACICPEFRH----FIDGVEGADSFS-LNAHKWFFTT-LDCCCLWVKD-----PSDLVNSLSTN-PEYLKN 144 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~----~~~~~~~~D~~~-~~~hK~l~~p-~g~g~l~v~~-----~~~~~~~~~~~-~~y~~~ 144 (310)
+++|.++....+....... .......+-++. .+..|.++.| .-+|++++.. +... +.+... ..+...
T Consensus 187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 265 (388)
T PRK08637 187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVK-EALEKKVKGLIRS 265 (388)
T ss_pred EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHH-HHHHHHHHHHhhc
Confidence 9999998654432211111 011111121222 3889976655 4477777643 3332 222100 000000
Q ss_pred cccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHH----HHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceE
Q 046506 145 KATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLR----HFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAV 217 (310)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~ 217 (310)
.. . ....+...++...+....+. +...+..+..+.+.+.|.+. +++.+. ++..+.
T Consensus 266 ~~--------------~---~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~-~~~~g~ 327 (388)
T PRK08637 266 NI--------------S---NGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAY-PFNSGY 327 (388)
T ss_pred cc--------------C---CCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cccceE
Confidence 00 0 00112222333333332332 22333444455556666543 245554 344443
Q ss_pred E-EEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHH
Q 046506 218 V-CFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 218 v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~ 295 (310)
+ .+.+.+. -..++.+.+.+ .|.... + .+.+++|+++.. .++++++..++
T Consensus 328 ~~~~~l~~~-----------------------~~~~l~~~l~~~~gv~~~-~---~~~~~iRi~~~~--~~~~~i~~~~~ 378 (388)
T PRK08637 328 FMCLKLKGV-----------------------DAEELRVHLLEKYGIGTI-A---LNETDLRIAFSC--VEEEDIPELFD 378 (388)
T ss_pred EEEecCChH-----------------------HHHHHHHHHhhhcceEEE-e---ccCCceEEEeec--CCHHHHHHHHH
Confidence 3 3333210 12456666654 454332 2 245689999763 67889999999
Q ss_pred HHHHHHHHH
Q 046506 296 VVQEHLEAL 304 (310)
Q Consensus 296 ~l~~~~~~~ 304 (310)
.|.++++++
T Consensus 379 ~l~~~~~~~ 387 (388)
T PRK08637 379 SIYKAIKDL 387 (388)
T ss_pred HHHHHHHhc
Confidence 998888765
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-08 Score=95.05 Aligned_cols=216 Identities=11% Similarity=0.053 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++++++.+... +..+..+++.-.....|.+. .+++|.++|++||+++++|+++.+.......+.-...++ ..
T Consensus 205 l~~~~~~~~~~---~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv-~P 280 (431)
T TIGR03251 205 LRQARAAFAER---PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-QP 280 (431)
T ss_pred HHHHHHHHHhC---CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCC-CC
Confidence 44555566432 22356777777777778764 499999999999999999999975544332211111233 38
Q ss_pred CeeeeecccccccccceEEEEEeCch-hHHh-hhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPS-DLVN-SLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~-~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
|++++ .|.+ | .+|++ ..++- .+.. .+. .+.... .++ ++-+....+..++++.+..+
T Consensus 281 Di~~~--gK~~--~-~~g~~-~~~~i~~~~~~~~~-~~~~~~--------------~T~-~gnpl~~aaa~a~L~~l~~~ 338 (431)
T TIGR03251 281 DIVAF--GKKT--Q-VCGIM-AGRRVDEVADNVFA-VPSRLN--------------STW-GGNLVDMVRATRILEIIEEE 338 (431)
T ss_pred CEEEe--cccC--c-cceEE-ecchHHHhhhhccc-CccccC--------------CCC-CCCHHHHHHHHHHHHHHHhc
Confidence 98876 4554 3 23444 44331 1101 110 000000 011 11122334444555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCeE-EecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD-KRFE-VVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~-~~~~-v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+ ..++..++.+++.+.|+++ .... ++... ...++.+.+.+. .....+...+
T Consensus 339 ~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~----------------------~~~~~~~~~l 393 (431)
T TIGR03251 339 R---LVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPST----------------------ADRDEVIRQL 393 (431)
T ss_pred C---HHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCH----------------------HHHHHHHHHH
Confidence 3 3445555666666666442 1122 22222 234556666431 2234677778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.++|.+ +.+. +...+|++++ ..+|++|||+++++|.+
T Consensus 394 ~~~Gvl-~~~~---g~~~lr~~P~-l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 394 YREGVL-LLGC---GERSIRFRPP-LTVTREEIDAAIDAIRR 430 (431)
T ss_pred HhCCeE-EecC---CCCeEEEECC-ccCCHHHHHHHHHHHHh
Confidence 888754 3322 3367999955 78999999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=95.75 Aligned_cols=240 Identities=10% Similarity=-0.049 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+.|++.+.... ......|++.-.....|.+.| +++|.++|++||+++++|.++.++......+.....++ ..|
T Consensus 206 ~~l~~~~~~~~--~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PD 282 (456)
T PRK07480 206 RQLEAKILELG--ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGI-KPD 282 (456)
T ss_pred HHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCC-CCC
Confidence 56666554321 112446666656666788776 99999999999999999999966543332221111233 378
Q ss_pred eeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 105 SFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 105 ~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++++ .|.+++.+ ..|.+.++++ .. +.+...+....... ++ ++-+..+.+..++|+.+..+
T Consensus 283 iv~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~------------T~-~gnpl~~Aaa~a~L~~l~~~-- 343 (456)
T PRK07480 283 LMTI--AKGLTSGYIPMGAVGVGDR-VA-EVLIEEGGEFNHGF------------TY-SGHPVAAAVALANLRILRDE-- 343 (456)
T ss_pred eeee--ehhhccCCccceEEEEcHH-HH-HHHhcCCCCcccCC------------CC-CcCHHHHHHHHHHHHHHHhC--
Confidence 7766 68877532 3677766544 32 33311111000000 11 11122334445555555333
Q ss_pred HHHHHHH-HHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSH-VNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~-~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
...++. .++.++|.+.|+++....++... ...++.+.+..... ...+.. ........+...+.++
T Consensus 344 -~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~ 411 (456)
T PRK07480 344 -GIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKA---------TRERFE--AGGGVGTICRDHCFAN 411 (456)
T ss_pred -CHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEecccc---------ccccCc--chhhHHHHHHHHHHHC
Confidence 344555 35666666666554222222111 12334444432100 000000 0012234566777888
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSAS 308 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~~~ 308 (310)
|.+. .+. ...+|+++. ...|++|||.++++|.+.+.++++.+
T Consensus 412 Gll~-~~~----~~~l~~~Pp-l~it~~eid~~~~~l~~al~~~~~~~ 453 (456)
T PRK07480 412 GLIM-RAV----GDRMIISPP-LVITHAEIDELVEKARKALDATAAEL 453 (456)
T ss_pred CcEE-eec----CCEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8644 321 257999955 46799999999999999998875543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-09 Score=98.26 Aligned_cols=216 Identities=13% Similarity=0.145 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC-
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE- 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~- 101 (310)
++++|+++|.+.. .....|++.-.....|.+.| +++|.++|++||++|++|.++.+.......+.--..++.
T Consensus 237 ~l~~l~~~l~~~~---~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~ 313 (464)
T TIGR00699 237 CLEEVEDLIKKWH---KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDD 313 (464)
T ss_pred HHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCC
Confidence 4567778886421 12456777777777788888 999999999999999999998655433322111112332
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|++++ .|.+++ .|++ +..+ .+. ...+.+...+ -.+-+..+.+..++++.+..
T Consensus 314 ~PDi~t~--gK~lg~---gG~~-~~~~-~~~---~~~~~~~~~T---------------~~gnp~~~aaa~a~L~~l~~- 367 (464)
T TIGR00699 314 PPDMVTF--SKKFQT---AGYF-FHDP-AFR---PNKPYRQFNT---------------WMGDPSRALILREIIQEIKR- 367 (464)
T ss_pred CCCEEEe--hhhhcc---CCcc-ccch-hcc---CCCCcccccC---------------CCCCHHHHHHHHHHHHHHHh-
Confidence 3788665 687741 2333 2221 110 0011111111 01111223333445555533
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCeE-EecC----CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD-KRFE-VVFP----RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~-~~~~-v~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
++..++..++.++|++.|+++ ..+. ++.. ....++.+.+.. ......+.+
T Consensus 368 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~----------------------~~~~~~i~~ 423 (464)
T TIGR00699 368 --KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPD----------------------EAKRDKLLK 423 (464)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCC----------------------HHHHHHHHH
Confidence 345555656666777776553 1122 1111 234455555432 122356777
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.+.++|.+ +.+. +..+|||+++ ...|++||+.++++|.+.
T Consensus 424 ~~~~~Gvl-~~~~---g~~~ir~~Pp-l~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 424 KARNNGVN-IGGC---GVKAIRLRPM-LVFQKHHADIFLEIISKI 463 (464)
T ss_pred HHHHCCcE-EecC---CCCeEEEeCC-CCCCHHHHHHHHHHHHHh
Confidence 88888854 3332 4478999955 679999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=96.38 Aligned_cols=234 Identities=11% Similarity=0.032 Sum_probs=128.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.|.... .....|++.-...+.|.+.| +++|.++|++||+++++|.++.+. ...........++ .
T Consensus 232 d~~~l~~~l~~~~---~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv-~ 306 (474)
T PLN02482 232 DLEAVKKLFEANK---GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGI-T 306 (474)
T ss_pred ChHHHHHHHHhCC---CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCC-C
Confidence 6899999986531 23456777777777888877 568999999999999999999644 3322111111233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|.+++ .|.+++.+..|.+..+ ++.. +.+.. .+.+...+ +. +-+....+..++++.+..
T Consensus 307 PDi~t~--gK~lggG~Pigav~g~-~ei~-~~~~~~~~~~~~~T--------------~~-gnpl~~aAala~L~~l~~- 366 (474)
T PLN02482 307 PDLTTL--GKVIGGGLPVGAYGGR-REIM-EMVAPAGPMYQAGT--------------LS-GNPLAMTAGIHTLKRLQQ- 366 (474)
T ss_pred CCEEEe--cchhhCCCceEEEEEc-HHHH-HhhccCCCcccccC--------------cc-hhHHHHHHHHHHHHHHhc-
Confidence 787655 8998875557777554 4333 33321 11111111 11 111223334455555532
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-C--CeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD-K--RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~-~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
++.+++..++.++|+++|.++ . ++.++.....+++.+.+....+... ++.. ..+ ......+...|.
T Consensus 367 --~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~-~~~~----~~d----~~~~~~~~~~l~ 435 (474)
T PLN02482 367 --PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNF-ADAK----KSD----TAKFARFHRGML 435 (474)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccCh-hhhc----cCC----HHHHHHHHHHHH
Confidence 346777778888888888754 1 2333311222244444432110000 0000 000 122345677788
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
++|. ++.+..+.. ++ .+...|++|||++++++.+.+..
T Consensus 436 ~~Gv-~~~~~~~~~----~~--psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 436 EEGV-YLAPSQFEA----GF--TSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred HCCe-EEeccCCCC----Cc--CCCCCCHHHHHHHHHHHHHHHHh
Confidence 8875 444321111 11 33567899999999999988754
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=96.14 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
++++|++.|.... ......|++.-.....|.+.| +++|.++|++||+++++|..+.++......+.-...++ .
T Consensus 205 ~~~~l~~~~~~~~--~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv-~ 281 (461)
T PRK07482 205 CADELEELILAEG--PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI-E 281 (461)
T ss_pred HHHHHHHHHHhcC--CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC-C
Confidence 4677888875321 112445555555555566644 88999999999999999999877654443322112334 3
Q ss_pred CCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.+++.+ ..|.++++++ .. +.+....+...... ...++ ++-+..+.+..++++.+.++
T Consensus 282 PDiv~~--gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~---------h~~T~-~gnpl~~Aaa~a~L~~~~~~ 347 (461)
T PRK07482 282 PDLITV--AKGLTSAYAPLSGSIVGEK-VW-DVLEQGSDEHGAIG---------HGWTY-SGHPICAAAALANLDILERE 347 (461)
T ss_pred CCEEEE--ccccccCccccceeeecHH-HH-HHHhcccccCCccc---------cCCCC-CcCHHHHHHHHHHHHHHHhC
Confidence 899887 68887643 4666766644 22 33221110000000 00011 11122334444555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCeEEecC-C-CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD-KRFEVVFP-R-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
...++..++.++|.+.|+++ ....++.. . ...++.+.+..... ...+.+.. ......+...+.
T Consensus 348 ---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~---------~~~~~~~~--~~~~~~i~~~~~ 413 (461)
T PRK07482 348 ---NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRD---------DRTPFDPA--LKIGPQVSAAAL 413 (461)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCC---------cCCCCChh--hHHHHHHHHHHH
Confidence 35555666777777777532 11222111 1 22344454432100 00000000 123456778888
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
++|.+... . .+..++|+.++ ..+|++||+.+++++.+.+..+.+
T Consensus 414 ~~Gvl~~~-~--~~~~~i~~~Pp-l~it~~ei~~~~~~l~~~l~~~~~ 457 (461)
T PRK07482 414 ERGVIARA-M--PHGDILGFAPP-LVLTRAEADEIVAIAKDAVDEVLG 457 (461)
T ss_pred HCCcEEec-C--CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88854322 1 12357999855 679999999999999998877643
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-09 Score=97.67 Aligned_cols=224 Identities=9% Similarity=-0.024 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEecc-CCccccc----CChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAV----DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~----~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
|++++++.|... +.....|++... ....|.+ ..+++|.++|++||+++++|.+|.+.......+.....++
T Consensus 190 d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv- 265 (428)
T PRK07986 190 DIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI- 265 (428)
T ss_pred HHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC-
Confidence 567888888632 112335555443 3334543 2389999999999999999999955433222111001223
Q ss_pred CCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCC-ccccccccccccccCCCCceeccCCCcchHHHHHHHHHhC
Q 046506 102 GADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNP-EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (310)
..|+++ ..|.+++. ..+|.+..+++ . .+.+.... ...... .++. +-+..+.+..++++.+.
T Consensus 266 ~PDi~t--~gK~l~gG~~p~~av~~~~~-i-~~~~~~~~~~~~~~~------------~T~~-g~p~~~aaa~a~L~~i~ 328 (428)
T PRK07986 266 APDILC--LGKALTGGTMTLSATLTTRE-V-AETISNGEAGCFMHG------------PTFM-GNPLACAVANASLSLLE 328 (428)
T ss_pred CCCEEE--echhhhCCcccCcchhchHH-H-HHHhhcCCCCccccC------------CCCC-cCHHHHHHHHHHHHHHH
Confidence 268775 57887644 23455554433 2 23332110 000000 0111 22233444555565553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 180 ~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
.+ +..++..++.++|++.|+++.....+... ...++.+.+..+. ....+...+
T Consensus 329 ~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~----------------------~~~~~~~~l 383 (428)
T PRK07986 329 SG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV----------------------NMAALQRFF 383 (428)
T ss_pred hC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc----------------------cHHHHHHHH
Confidence 33 45777778888888888765222222211 1334445443310 023567777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.++|.+ +.+. + .++|++++ ...|++||+.++++|.+.+.
T Consensus 384 ~~~Gl~-~~~~---g-~~i~~~Pp-l~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 384 VEQGVW-IRPF---G-KLIYLMPP-YIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred HHCCcE-EEec---C-CEEEEeCC-CCCCHHHHHHHHHHHHHHHh
Confidence 788854 4332 2 48999955 67999999999999998774
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-08 Score=94.40 Aligned_cols=241 Identities=13% Similarity=0.088 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+++++.|.... ......|++.-.....|.+.| +++|.++|++||+++++|..+.++......+.....++ ..|
T Consensus 202 ~~l~~~i~~~~--~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PD 278 (459)
T PRK05965 202 AALRAKVAELG--ADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPD 278 (459)
T ss_pred HHHHHHHHhcC--CCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCC
Confidence 57777776421 112445666555555676654 88999999999999999999877654443322112233 379
Q ss_pred eeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 105 SFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 105 ~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++++ .|.+++.+ ..|.+.++++ .. +.+...+....... ...++ ++.+..+.+..++++.+.+
T Consensus 279 iv~~--gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~---------h~~T~-~gnpl~~Aaa~a~L~~l~~--- 341 (459)
T PRK05965 279 LMTV--AKGLTSGYVPMGAVLMSDH-VY-QGIADGAGAAAPVG---------HGYTY-SAHPVSAAVGLEVLRLYHE--- 341 (459)
T ss_pred eEEe--chhhccCCcceeEEEEcHH-HH-HHHhcccccccccc---------ccCCC-CCCHHHHHHHHHHHHHHHh---
Confidence 8888 58877653 5777777655 32 33221110000000 00011 1222233344445554433
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
+...++..++.++|.+.|+++....++... ...++.+.+..... ...+.+. . ......+...+.++|
T Consensus 342 ~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~---------~~~~~~~-~-~~~~~~i~~~~~~~G 410 (459)
T PRK05965 342 GGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKA---------TKTPFDA-A-LDPADRIFDRAYANG 410 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEecccc---------ccCCCCc-h-hHHHHHHHHHHHhCC
Confidence 345666777888888888765322222221 12334444432100 0000000 0 123456777788888
Q ss_pred cEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 262 KAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 262 ~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.+. .+ .+..+||+++. .-.|++||+.+++++.+.+.++.
T Consensus 411 ll~-~~---~g~~~i~~~Pp-L~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 411 LVF-RA---FGDGVLGFAPA-LCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred eEE-Ee---cCCcEEEEECC-CcCCHHHHHHHHHHHHHHHHHHh
Confidence 543 32 13467999955 67899999999999999887763
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-09 Score=97.42 Aligned_cols=230 Identities=14% Similarity=0.057 Sum_probs=127.0
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccc
Q 046506 12 NFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 12 ~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
.++.+|+++.+.+..|+++ . + .+.+++++.++|++|.+.+ +++|+++|++||+++++|.++.-...
T Consensus 152 ~~~~v~~~~~~~~~~~~~~---~--~------~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~ 220 (402)
T TIGR03542 152 KITYLPCTKENNFIPDLPE---E--P------KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFIS 220 (402)
T ss_pred eEEEeecchhhCCCCCccc---c--C------CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhcc
Confidence 3788888754334444321 1 1 1346777789999999988 78899999999999999999865432
Q ss_pred cChhhhhhhcCCCC---CCeeeeecccccccc-cceEEEEEeCchhH-------HhhhccCCccccccccccccccCCCC
Q 046506 89 ICPEFRHFIDGVEG---ADSFSLNAHKWFFTT-LDCCCLWVKDPSDL-------VNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 89 ~~~~~~~~~~~~~~---~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~-------~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
....... ...+.. .-++..|..|.++.| .-+|+++..++ .+ ...+... ....
T Consensus 221 ~~~~~~~-~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~-l~~~~~~~~~~~~~~~---~~~~------------ 283 (402)
T TIGR03542 221 DPSLPHS-IFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE-LTYADGHSVIQDWERR---QCTK------------ 283 (402)
T ss_pred CCCCCcc-hhhCCCCcccEEEEecCccccCCCCcceEEEEecHH-HhhcchhhHHHHHHHH---hhhc------------
Confidence 1110011 111111 124467899998644 45777766433 22 0110000 0000
Q ss_pred ceeccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
..+ ...+...++...+. .....+..+...+..+.+.+.|++. ++++..+..++.+.+.+++.-
T Consensus 284 --~~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~~~-------- 349 (402)
T TIGR03542 284 --FNG---ASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPEGI-------- 349 (402)
T ss_pred --ccC---CCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCCCC--------
Confidence 000 01111112222221 1234445566677778888888875 677664445666666665310
Q ss_pred hccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++.+.+.+ .|.....+.... +.+++|+++. .++++++..++.|++.
T Consensus 350 -------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 350 -------S-------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAF---GKRENIVEACERIKEA 401 (402)
T ss_pred -------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHhh
Confidence 0 1346666664 454333333222 3579999943 3678888888887754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-09 Score=94.41 Aligned_cols=203 Identities=10% Similarity=0.024 Sum_probs=114.7
Q ss_pred cEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC----CCCCeeeeecccccccc
Q 046506 45 PLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV----EGADSFSLNAHKWFFTT 117 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~~p 117 (310)
+.+++++..+|++|.+.+ +++|+++|++||+++++|.+++......+......... ..--++..|..|.++.|
T Consensus 143 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~ 222 (357)
T TIGR03539 143 PDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLA 222 (357)
T ss_pred ccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCC
Confidence 457778889999999876 66799999999999999999864332111000000000 00126668999998665
Q ss_pred cc-eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Q 046506 118 LD-CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAK 195 (310)
Q Consensus 118 ~g-~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~ 195 (310)
.- +|+++ .+++.+.+..... .+.. .. ...+...++...+. ...++...++..+..+
T Consensus 223 G~R~G~~i-~~~~~~~~~~~~~-~~~~-~~-------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 280 (357)
T TIGR03539 223 GYRAGFVA-GDPALVAELLTVR-KHAG-LM-------------------VPAPVQAAMVAALGDDGHVAEQKARYAARRA 280 (357)
T ss_pred ceeEEEEe-cCHHHHHHHHHHH-hhcc-cC-------------------CCHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 32 45554 5554443321111 0000 00 01111222222332 2345566667777888
Q ss_pred HHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCE
Q 046506 196 LFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL--GGI 273 (310)
Q Consensus 196 ~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~ 273 (310)
.+.+.|.+. ++.+. ++..+++.+...+.+ ..++.+.|.+.|.....+..+ .+.
T Consensus 281 ~~~~~L~~~-g~~~~-~p~~~~~~~~~~~~~-----------------------~~~~~~~l~~~gV~v~pg~~f~~~~~ 335 (357)
T TIGR03539 281 QLKPALEKA-GFRID-HSEAGLYLWATRGED-----------------------AWDTVDRLAELGILVAPGDFYGPAGS 335 (357)
T ss_pred HHHHHHHHc-CCCCc-CCCccEEEEEECCCC-----------------------HHHHHHHHHhCCEEECCccccCCCCC
Confidence 888888875 67654 455565544433311 134666676777543332222 235
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHH
Q 046506 274 YAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 274 ~~iRis~~~~~~t~edi~~li~~l 297 (310)
+++|+|+.+ ++++++..++.|
T Consensus 336 ~~iRis~~~---~~~~i~~~~~~l 356 (357)
T TIGR03539 336 QHVRVALTA---TDERIAAAVARL 356 (357)
T ss_pred CeEEEEecC---CHHHHHHHHHhh
Confidence 799999663 578899888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-08 Score=92.50 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=131.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.++.++ ++.+|++++++.+. . ..++++++++|++|.+.+.++|.++|+ +|+++++|.+
T Consensus 111 ~~~~g~~---~~~v~~~~--~~~~d~~~l~~~~~-~------~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~ 177 (337)
T PRK03967 111 AKLNGIP---VIDVPLKE--DFTIDGERIAEKAK-N------ASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEA 177 (337)
T ss_pred HHHcCCe---EEEeecCC--CCCcCHHHHHHhcc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECc
Confidence 4566776 99999875 35899999988652 2 236667889999999999999999995 7999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.... ............. -++..|..|.++.| .-+|+++. ++..+.........+ .
T Consensus 178 y~~~~--~~~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~-~~~~i~~~~~~~~~~----~--------------- 234 (337)
T PRK03967 178 YAEFS--GKSLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIA-NEEIIDALYRIKPPF----S--------------- 234 (337)
T ss_pred hhhhc--ccchHHHHhhCCC-EEEEecchHhhcchhhhheeeec-CHHHHHHHHhhcCCC----C---------------
Confidence 96432 1111111111111 24568999999844 45677765 444433322111111 0
Q ss_pred cCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 162 LSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
...+...++...+ ..+.+.+..++..+..+.+.+.|.+. .. ++.++.+.+.+
T Consensus 235 ----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~-~~~~~~~~~~~------------------ 287 (337)
T PRK03967 235 ----LNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY----AY-PSDANFLLLKL------------------ 287 (337)
T ss_pred ----CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC----cC-CCCCcEEEEhH------------------
Confidence 0112222222222 23345555566666677788887753 11 34444443311
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+.+.|.++|. .+.+......+.+|+++. +.++.+.++++|+.+.+.
T Consensus 288 -----------~~~~~l~~~gi-~v~~~~~~~~~~~Ri~~~----~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 288 -----------DAYDYLLENGI-VVRKLSGRLEGHIRVTVG----KREENDEFIKALKEIKEG 334 (337)
T ss_pred -----------HHHHHHHHCCE-EEEeCCCCCCCeEEEecC----CHHHHHHHHHHHHHHHHh
Confidence 14566666764 333221123468999844 467889999999887654
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-08 Score=91.65 Aligned_cols=219 Identities=14% Similarity=0.098 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc--CC--hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV--DT--LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~--~p--l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.+.+. .+..|+++-..+..|.. .+ +++|.++|++||+++++|.++.+.............++ .
T Consensus 155 d~~~l~~~~~~~-----~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~ 228 (382)
T PLN00144 155 NLEAARKLIQKG-----KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV-E 228 (382)
T ss_pred CHHHHHHhcCCC-----CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC-C
Confidence 678999888432 24455555444554443 23 88999999999999999999976544332111001233 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.| ..+..|.++...-.|++..+++ .. +.+... .+. . ++ ++-+..+..+.++++.+....
T Consensus 229 PD--i~t~sK~l~~G~pig~v~~~~~-~~-~~~~~~-~~~-~--------------T~-~~~pl~~aaa~a~l~~i~~~~ 287 (382)
T PLN00144 229 PD--IMTLAKPLAGGLPIGAVLVTEK-VA-SAINPG-DHG-S--------------TF-AGGPLVCNAALAVLDKISKPG 287 (382)
T ss_pred CC--EEEecccccCCcceEEEEEcHH-HH-hccCCC-CCC-C--------------CC-CCCHHHHHHHHHHHHHHhhch
Confidence 67 5555899986666777776533 32 222110 000 0 11 111223344555566664434
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLV----GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L----~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+.+ +..++.+++++.| .+.|.+.-+.. ....+.+.+... ...+...+.
T Consensus 288 ~~~---~~~~~g~~l~~~l~~~~~~~~~~~~vrg-~G~~~~l~l~~~------------------------~~~~~~~~~ 339 (382)
T PLN00144 288 FLA---SVAKKGEYLRELLRRKLGGNPHVKEVRG-VGLLVGIQLDVP------------------------AGPLVDACR 339 (382)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhhCCCceeeec-CceEEEEEecCc------------------------cHHHHHHHH
Confidence 433 3334444444443 34433321212 333444544211 135667777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.|.... +. ....+||++++ ...++++++.+++.|.+.+..+
T Consensus 340 ~~Gv~i~-~~--~~~~~lrl~p~-~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 340 DSGLLVL-TA--GKGDVVRLVPP-LVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred HCCeEEe-ec--CCCCEEEEeCC-CccCHHHHHHHHHHHHHHHHhc
Confidence 8886443 32 11378999965 4477999999999999887653
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-08 Score=94.56 Aligned_cols=236 Identities=10% Similarity=0.038 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhh-hcCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVEGA 103 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~ 103 (310)
+.+++.|... .+..+..|++.-.....|.+.| +++|.++|++||+++++|..+.++......+... ..++ ..
T Consensus 207 ~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~P 283 (466)
T PRK07036 207 DEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QP 283 (466)
T ss_pred HHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CC
Confidence 4556666431 1123556777767777788877 9999999999999999999996654433221110 1233 37
Q ss_pred Ceeeeeccccccccc-ceEEEEEeCchhHHhhhccC--Cc--cccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 104 DSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTN--PE--YLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 104 D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~--~~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
|++++ .|.+++.+ .+|.+..+++ .. +.+... +. |... . ++ ++.+....+..++++.+
T Consensus 284 Divt~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~~~-~------------T~-~gnpl~~aaa~a~Le~i 345 (466)
T PRK07036 284 DIITF--AKGLTSGYQPLGAVIISER-LL-DVISGPNAKGNVFTHG-F------------TY-SGHPVACAAALKNIEIM 345 (466)
T ss_pred CEEEE--ccccccCccccEEEEEcHH-HH-HHHhcccCcCcccccC-C------------CC-CCCHHHHHHHHHHHHHH
Confidence 88766 68887642 4677776544 32 333210 01 1100 0 11 11222333444455544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
.. ++..++..++.++|++.|.++....++... ...++.+.+...... ..+... + ......+...
T Consensus 346 ~~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~---------~~~~~~-~-~~~~~~~~~~ 411 (466)
T PRK07036 346 ER---EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGS---------KALLPE-D-IAIGQRIDRH 411 (466)
T ss_pred Hh---CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccc---------cCCCCc-h-hHHHHHHHHH
Confidence 32 356677777888888888654332222211 123444555321100 000000 0 1234567777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+.++|.+.. +. + ..+|+++. ...|++|||.+++++.+.+..+.
T Consensus 412 ~~~~Gvl~~-~~---~-~~~~l~Pp-l~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 412 CQERGLLVR-PL---E-HLCVLSPP-LIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred HHHCCcEEe-ec---C-CEEEEeCC-CcCCHHHHHHHHHHHHHHHHHHH
Confidence 888885443 21 2 46899855 46899999999999988887664
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=95.45 Aligned_cols=227 Identities=15% Similarity=0.086 Sum_probs=120.3
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 100 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~ 100 (310)
+.+|+++|+ +.+ .+.++++...+|++|.+.+ +++|+++|++||+++++|.+++...-.. .+.......
T Consensus 167 ~~~d~~~l~--~~~------~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~ 237 (416)
T PRK09440 167 YHVDFEHLH--IDE------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATPLW 237 (416)
T ss_pred cCCCHHHcc--cCC------CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCccc
Confidence 579999987 222 1457888888999999977 6778889999999999999996321100 000000000
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..-=++..|+.|++....-+|+++. ++..+.........+... ...+...++...+..
T Consensus 238 ~~~vI~~~SfSK~~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~---------------------~s~~~q~~~~~~l~~ 295 (416)
T PRK09440 238 NPNIILCMSLSKLGLPGVRCGIVIA-DEEIIEALSNMNGIISLA---------------------PGRLGPAIAAEMIES 295 (416)
T ss_pred cCCeEEEecccccCCCcceEEEEeC-CHHHHHHHHHHHHHhccC---------------------CCcHHHHHHHHHhcc
Confidence 0011456899997443345666654 454433221111000000 012222333333322
Q ss_pred HHHH----H-HHHHHHHHHHHHHHHHcCC-C--CeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHH
Q 046506 181 ANLR----H-FLRSHVNMAKLFERLVGSD-K--RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRE 252 (310)
Q Consensus 181 ~~~~----~-~~~~~~~~a~~l~~~L~~~-~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (310)
..+. + +.+...+..+.+.+.|.+. + ++.+..+..+..+.+.+.+... + ..+
T Consensus 296 ~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~--------------~-------~~~ 354 (416)
T PRK09440 296 GDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPI--------------T-------TEE 354 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCCC--------------C-------HHH
Confidence 1222 1 2233334444455555432 2 4555434345555555543110 0 134
Q ss_pred HHHHHHhcCcEEEEEeEE-CC--------EeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 253 LLESINASGKAYMTHAVL-GG--------IYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 253 l~~~l~~~g~~~~~~~~~-~~--------~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+.+.+.+.|.....+... .+ .+++|+|+.. ++++++.+++.|++++...+
T Consensus 355 ~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~---~~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 355 LYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ---DDEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred HHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC---CHHHHHHHHHHHHHHHHHHh
Confidence 556666666544433222 11 2589999652 58999999999999887653
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-08 Score=92.72 Aligned_cols=233 Identities=9% Similarity=0.050 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+++|++.+.... ....+..++++-...+.|.+.| +++|.++|++||+++++|.++++.........-...++ ..
T Consensus 184 ~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~-~p 261 (425)
T PRK08088 184 IASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGV-AA 261 (425)
T ss_pred HHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCC-CC
Confidence 556888886321 1122456666666666677766 99999999999999999999875433221111001111 24
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
| ..+..|.++.....|++..+ ++.. +.+... .+.. ++. +-+.....+.+.++.+ ..
T Consensus 262 d--i~s~sK~l~~G~rig~v~~~-~~~~-~~~~~~-~~~~---------------t~~-~~~~~~~a~~~~l~~~---~~ 317 (425)
T PRK08088 262 D--LTTFAKSIAGGFPLAGVTGR-AEVM-DAIAPG-GLGG---------------TYA-GNPIACAAALAVLKVF---EQ 317 (425)
T ss_pred C--EEEEeccccCCCcceeeEec-HHHH-hhcCCC-CCCC---------------CCC-cCHHHHHHHHHHHHHH---Hh
Confidence 5 46668999855556777654 3333 322111 0000 001 1112223333333333 23
Q ss_pred HHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 184 RHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
++..++..+..+++.+.|.+ .|.+.-+..+ ...+.+.+...... ..+. ......+...+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~-----------~~p~---~~~~~~l~~~~~~ 382 (425)
T PRK08088 318 ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDH-----------SKPN---AKLTAQIVARARD 382 (425)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCC-----------CCCC---HHHHHHHHHHHHh
Confidence 34455555555555555543 3433222223 44455665321000 0000 1233567778888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.|.++..... ...++|++++ ...++++|+..++.|.+.+..+
T Consensus 383 ~Gv~~~~~~~--~~~~iRl~~~-~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 383 KGLILLSCGP--YYNVLRILVP-LTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CCCEEecCCC--CCCEEEEECC-CCcCHHHHHHHHHHHHHHHHhh
Confidence 8865543211 1368999965 4688999999999999888654
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-08 Score=92.40 Aligned_cols=229 Identities=14% Similarity=0.066 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++.+++.+.... .+.....|++.-.....|.+.| +++|.++|++||+++++|.++.+.........-...++ ..
T Consensus 182 ~~~~~~~~~~~~-~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~p 259 (420)
T TIGR00700 182 LAAARAIFVIDV-GANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EP 259 (420)
T ss_pred HHHHHHHHHhhc-CCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CC
Confidence 566777764211 1123456666666666787766 99999999999999999999876544332111001122 36
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|+++ ..|.+++..-.|+++.+++ .. +.+.. ..... ++ ++-+....++.++++.+..+.+
T Consensus 260 Di~~--lsK~l~~G~pig~v~~~~~-i~-~~~~~--~~~~~--------------T~-~~~pl~~aaa~a~l~~l~~~~~ 318 (420)
T TIGR00700 260 DLIT--TAKSLADGLPLSGVTGRAE-IM-DAPAP--GGLGG--------------TY-AGNPLACAAALAVLAIIESEGL 318 (420)
T ss_pred CEEE--eeccccCCcceEEEEecHH-HH-hhcCC--CCcCC--------------CC-CcCHHHHHHHHHHHHHHHhccH
Confidence 7655 6899886556777776533 32 32211 00000 11 1112223334445655544443
Q ss_pred HHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 184 RHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
.+ +..++.+++++.|.+ .|.+.-+.+ ...++.+.+..... ..+. ......+.+.+.+
T Consensus 319 ~~---~~~~~g~~l~~~L~~l~~~~~~~~~vrg-~G~~~~i~~~~~~~------------~~~~---~~~~~~l~~~~~~ 379 (420)
T TIGR00700 319 IE---RARQIGRLVTDRLTTLKAVDPRIGDVRG-LGAMIAVELVDPGT------------TEPD---AGLAERIATAAHA 379 (420)
T ss_pred HH---HHHHHHHHHHHHHHHHHhhCCCEEEeec-cceEEEEEEecCCC------------CCcc---HHHHHHHHHHHHH
Confidence 33 333344444444433 343332322 34445555532100 0000 2334566777778
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.|.+....... ..++|+++. .-.++++++.+++.|.+.+
T Consensus 380 ~Gv~i~p~~~f--~~~lRl~p~-l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 380 AGLLLLTCGMF--GNIIRFLPP-LTIGDELLSEGLDILCAIL 418 (420)
T ss_pred CCeEEeccCCC--CCEEEEECC-CCcCHHHHHHHHHHHHHHh
Confidence 88654332211 368999955 3478999999999998875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-08 Score=91.61 Aligned_cols=222 Identities=12% Similarity=0.055 Sum_probs=134.2
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++.+|+. ++.+|.+++ +.++... +. . +.++++..++|++|.+.+.+++.+++ ++++++++|.
T Consensus 112 ~~~~~g~~---~~~v~~~~~--~~~~~~~----~~-~------~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE 174 (335)
T PRK14808 112 FAKAVGAK---FLEVPLTKD--LRIPEVN----VG-E------GDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDE 174 (335)
T ss_pred HHHHcCCe---EEEecCCCc--CCCChhH----cc-C------CCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEEC
Confidence 45677887 999999863 3554322 21 1 34788899999999999999999998 5899999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
++.-.. ............ -=++..|..|.++.| .-+|+++. +++.++........+..
T Consensus 175 ~Y~~f~--~~~~~~~~~~~~-~vi~~~S~SK~~~l~GlRvG~~v~-~~~~~~~l~~~~~~~~~----------------- 233 (335)
T PRK14808 175 AYYEFH--GESYVDLLKKYE-NLAVIRTFSKAFSLAAQRIGYVVS-SEKFIDAYNRVRLPFNV----------------- 233 (335)
T ss_pred chhhhc--CCchHHHHHhCC-CEEEEEechhhccCcccceEEEEe-CHHHHHHHHHhcCCCCC-----------------
Confidence 986432 111111111111 125668999999854 44677665 44444332111111000
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+. .....+.++++ ..+.+.+..+...+..+.+.+.|.+. |+++. ++..+.+.+.+....
T Consensus 234 --~~-~~q~a~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~l~~~~-------------- 292 (335)
T PRK14808 234 --SY-VSQMFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFIFMEKEE-------------- 292 (335)
T ss_pred --CH-HHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCeEEEEeCCCcc--------------
Confidence 00 01111222222 22345666667777778888999886 77765 457777766654321
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.+.+.|.... .. ...+|+|+. +.++.++++++|++.
T Consensus 293 ---------~~~~~~~l~~~Gi~V~-~~----~~~~Risi~----~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 293 ---------KERLLEHLRAKNIAVR-SF----REGVRITIG----KREENDMILKELEVF 334 (335)
T ss_pred ---------HHHHHHHHHHCCeEEE-EC----CCCeEEecC----CHHHHHHHHHHHHhh
Confidence 1356777778875433 21 257999944 368899999998753
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-08 Score=93.93 Aligned_cols=232 Identities=10% Similarity=0.006 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++.|.+.. .....|++.-...+.|.+.| +++|.++|++||+++++|.++.++ ...........++ .
T Consensus 186 d~~~l~~~l~~~~---~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv-~ 260 (428)
T PRK12389 186 DIEALKEALDKWG---DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGV-E 260 (428)
T ss_pred CHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCC-C
Confidence 6799999886432 12456777777777898888 999999999999999999999765 2221111001233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|.+++ .|.+++.+..|.+..+ ++.. +.+.. .+.+...+ + .+-+..+.+..++++.+..+
T Consensus 261 PDivt~--gK~lggG~Pi~av~~~-~~i~-~~~~~~~~~~~~~T--------------~-~gnpl~~Aaala~L~~l~~~ 321 (428)
T PRK12389 261 PDLTAL--GKIIGGGLPIGAYGGR-KDIM-EQVAPLGPAYQAGT--------------M-AGNPASMAAGIACLEVLQQE 321 (428)
T ss_pred CCeeee--chhhcCCCceeEEeEH-HHHH-hhhccCCCcccccC--------------C-ccCHHHHHHHHHHHHHHhcc
Confidence 787654 7988765557777554 3333 33311 11111111 0 11122334444555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CC-eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KR-FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~-~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
+..++..++.++|++.|+++ +- ..+.. ...++.+.+....... ....... + ......+...
T Consensus 322 ---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r--~~g~~gi~~~~~~~~~------~~~~~~~--~-~~~~~~~~~~ 387 (428)
T PRK12389 322 ---GVYEKLDRLGAMLEEGILEAAEKHGITITINR--LKGALTVYFTDEKVTN------YDQAERS--D-GEAFGKFFKL 387 (428)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe--cCcEEEEEEeCCCCCC------hhhhccc--C-HHHHHHHHHH
Confidence 46677778888888888653 21 12211 1223444333210000 0000000 0 1233567777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+.++|.+ +.+. +...+.+ + ...|++||+.+++++++.+.+
T Consensus 388 l~~~Gv~-~~~~---~~~~~~~--~-l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 388 MLNQGIN-LAPS---KYEAWFL--T-TAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred HHHCCcE-eecC---CCCCeee--c-CCCCHHHHHHHHHHHHHHHHh
Confidence 8888854 4332 1122333 3 467899999999999988754
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-08 Score=92.96 Aligned_cols=227 Identities=10% Similarity=0.044 Sum_probs=125.5
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...+++.-.....|.+.| +++|.++|++||+++++|..+.+.......+.....++ ..|.+++ .|.+++....
T Consensus 207 iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~~G~Pi 283 (442)
T TIGR00709 207 PAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGI-EPDFVVM--SKAVGGGLPL 283 (442)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCC-CCcEEEE--cccccCCccc
Confidence 445555555555566543 88999999999999999999876654443222111233 3788884 7888775567
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|.+..+++ + ..+. +..... + -++-+..+.+..++++.+..+ ...++..++.++|.+.
T Consensus 284 gav~~~~~--~-~~~~--~~~~~~--------------T-~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~ 340 (442)
T TIGR00709 284 AVLLIAPE--F-DAWQ--PAGHTG--------------T-FRGNQLAMVTGTEALNYWKDD---NLAQNAQERGERITSF 340 (442)
T ss_pred EEEEEchH--H-hccC--CCcCCC--------------C-CCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 88877644 2 2211 111000 1 111122333444555544333 4455666777777777
Q ss_pred HcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 201 VGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 201 L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
|+++ ..+.++... ....+.+.+.....+ ++. ....+.+ ......+...+.++|.+ +.+.. .+..++|
T Consensus 341 L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~---~~~-~~~~~~~----~~~~~~~~~~~~~~Gvl-~~~~~-~~~~~l~ 410 (442)
T TIGR00709 341 LDDMIKEHPCIGNVRGRGLMQGIMIVDERQS---KDA-TGAYPRD----CELAAAIQGACFENGLL-LETGG-REGEVFR 410 (442)
T ss_pred HHHHHHhCCCeeeeeccceEEEEEEccCccc---ccc-cccCCcc----hHHHHHHHHHHHHCCeE-EeecC-CCCCEEE
Confidence 7653 122222221 233444555321000 000 0000000 12345667777788854 33221 1246899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHLEALLSAS 308 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~~~~~~~~ 308 (310)
+.++ ...|++||+.+++++.+.+.++.+.+
T Consensus 411 ~~Pp-l~it~~ei~~~~~~l~~~l~~~~~~~ 440 (442)
T TIGR00709 411 LLCP-ITIDQEECEEGISRFKQAVEEALAEV 440 (442)
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9955 67999999999999999998775543
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=95.26 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=115.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+...|.. ++.+|+++.+++.+|+++|++++++....+.++.++++..++|++|.+.+ +++|+++|++||+++++
T Consensus 172 ~~~~g~~---~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 172 ISLLGGT---LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred HHHcCCE---EEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456665 89999987545789999999999864332223567888888999999876 66788899999999999
Q ss_pred ecccccccccCh-hh---hhhhcCC----C-CCC-eeeeeccccc-ccc-cceEEEEE--eCchhHHhhhccCCcccccc
Q 046506 80 DAAYAGSACICP-EF---RHFIDGV----E-GAD-SFSLNAHKWF-FTT-LDCCCLWV--KDPSDLVNSLSTNPEYLKNK 145 (310)
Q Consensus 80 D~a~~~~~~~~~-~~---~~~~~~~----~-~~D-~~~~~~hK~l-~~p-~g~g~l~v--~~~~~~~~~~~~~~~y~~~~ 145 (310)
|.+++-..+... .+ ......+ . ... ++..|+.|.+ +.| .-+|++++ .++..+....... .....
T Consensus 249 DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~--~~~~~ 326 (407)
T PLN02368 249 DEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA--SIALS 326 (407)
T ss_pred EccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh--cccCC
Confidence 999865543211 11 1111111 0 112 4457889997 333 44677764 3444443322110 00000
Q ss_pred ccccccccCCCCceeccCCCcchHHHHHHHHHhCH------------HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC
Q 046506 146 ATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV------------ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR 213 (310)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~ 213 (310)
...+..+++...+.. +...++.+...+..+.+.+.|.++||+.+. .|
T Consensus 327 --------------------~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~-~P 385 (407)
T PLN02368 327 --------------------PNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCN-FT 385 (407)
T ss_pred --------------------CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeC-CC
Confidence 111222233333311 112345677788889999999999998875 55
Q ss_pred CceEEEE
Q 046506 214 HFAVVCF 220 (310)
Q Consensus 214 ~~~~v~~ 220 (310)
+.....|
T Consensus 386 ~Gafy~~ 392 (407)
T PLN02368 386 EGAMYSF 392 (407)
T ss_pred CeeeEec
Confidence 6555544
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-08 Score=94.42 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.|.... ..+..|++....+++|.+.| +++|.++|++||+++++|.+|.+. ...........++ .
T Consensus 181 d~~~l~~~i~~~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~-~ 255 (423)
T TIGR00713 181 DLEALEEVFEEYG---EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGV-E 255 (423)
T ss_pred CHHHHHHHHHHcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCC-C
Confidence 7899999997421 12446666555555788877 789999999999999999999655 2211111111222 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|.+ +..|.+++..-.|+++.+ ++.. +.+... ..+.... -++-+....+..++++.+..+
T Consensus 256 pDi~--t~sK~l~~G~pig~v~~~-~~i~-~~~~~~~~~~~~~T---------------~~~~~~~~aaa~a~l~~~~~~ 316 (423)
T TIGR00713 256 PDLT--TLGKIIGGGLPVGAFGGR-REIM-ERLAPEGPVYQAGT---------------LSGNPLAMAAGLATLKLLDEE 316 (423)
T ss_pred cchh--hhhhhhcCCCceeeeeEH-HHHH-HhhCcCCCeeeccC---------------CCCCHHHHHHHHHHHHHHhcc
Confidence 5755 568998743346766654 3333 332110 0011100 011122334444555554332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 182 -NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 182 -~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
.++...+....+.+.+.+.+.+. ++.........++.+.+....... .... ... + ......+.+.+.++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~v~~~~~~~~~-----~~~~-~~~--~-~~~~~~~~~~l~~~ 386 (423)
T TIGR00713 317 GVYTELDELAKRLAEGLSEVLEDT-GIPHTVNRVGSMFSLFFTEEEVTN-----YADA-KKS--D-TELFAKFFHEMLDK 386 (423)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccEEEEEEecCCCCC-----hhhh-hcc--c-HHHHHHHHHHHHHC
Confidence 23333333334444444444444 333211123444554443211000 0000 000 0 11224567778787
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
|. ++.+. +.+.+|+++. .|++|++.+++.|.+.+.+
T Consensus 387 Gv-~v~~~---~~~~~~l~~~---~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 387 GV-FLPPS---QFEACFLSAA---HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred Ce-EEecC---CccceeeECC---CCHHHHHHHHHHHHHHHhh
Confidence 74 44432 2245788732 6899999999999887754
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-08 Score=91.13 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc-cCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITA-VDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~-~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
+++++++.+.... .+.....|++.-.....|. +.| +++|.++|++||+++++|.++.+.............++ .
T Consensus 182 ~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~ 259 (421)
T PRK06777 182 ALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV-K 259 (421)
T ss_pred HHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC-C
Confidence 3667888875421 1112445666655666675 344 99999999999999999999875433332111001122 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++ +..|.+++....|++..++. .. +.+... .+ .. ++ ++-+....+..++++.+..
T Consensus 260 pDiv--~~sK~l~~G~pigav~~~~~-i~-~~~~~~-~~-~~--------------T~-~~~p~~~aaa~a~L~~~~~-- 316 (421)
T PRK06777 260 PDLI--TMAKSLGGGMPISAVVGRAE-VM-DAPAPG-GL-GG--------------TY-AGNPLAVAAALAVLDVIAE-- 316 (421)
T ss_pred CCEE--eeehhhcCCCceEEEEEcHH-HH-hccCCC-CC-CC--------------CC-CcCHHHHHHHHHHHHHHHh--
Confidence 6765 46898875445777766533 32 322110 00 00 11 1112233344445544422
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+++.++..++.+++++.|+++ |.+.-+ .+...++.+.+..... ..+. ..+...+...+.
T Consensus 317 -~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~~i~~~~~~~------------~~~~---~~~~~~l~~~~~ 379 (421)
T PRK06777 317 -EKLCQRALILGAHLVEVLEKAKASCPAIVDI-RARGSMVAVEFNDPQT------------GKPS---PEFTRQYQRQAL 379 (421)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCceEEEEEEEecCcc------------CCcc---HHHHHHHHHHHH
Confidence 456777777888888888764 333222 2334444444432100 0000 223455666677
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
++|.+ +.+... ...++||++. ...++++++.+++.|.+.+
T Consensus 380 ~~Gv~-i~~~~~-~g~~lr~~pp-l~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 380 EEGLL-LLSCGV-HGNVIRFLYP-LTIPDAQFSKALNILTRLL 419 (421)
T ss_pred hCCeE-EeecCC-CCCEEEEeCC-CCCCHHHHHHHHHHHHHHH
Confidence 77754 443211 1358999955 4689999999999998765
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-08 Score=102.55 Aligned_cols=235 Identities=9% Similarity=-0.018 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhh-hhcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~-~~~~~~~ 102 (310)
.+++++.+......+..+..|++.-...+.|.+.| +++|.++|++||+++++|.+|.++......+.. -..++ .
T Consensus 728 ~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~ 806 (972)
T PRK06149 728 VRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-V 806 (972)
T ss_pred HHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-C
Confidence 35666666543333334566777777777788888 999999999999999999999555433321100 01233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++++ .|.+++....|++..+++ .. +.+... .+.+. ++ ++-+..+.+..++++.+..+
T Consensus 807 PDivt~--gK~lg~G~Pl~av~~~~~-i~-~~~~~~-~~~~s--------------T~-~gnP~~~aaala~L~~i~~e- 865 (972)
T PRK06149 807 PDIITM--AKGMGNGHPLGAVITRRE-IA-EALEAE-GYFFS--------------ST-GGSPVSCRIGMAVLDVLREE- 865 (972)
T ss_pred CCEEEe--cccccCCeeeEEEEEcHH-HH-hhhccC-CcccC--------------CC-CCCHHHHHHHHHHHHHHHhc-
Confidence 788855 798886555777777654 32 333211 11111 11 22223334445555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
++.++..++.++|+++|+++ ....++... ...++.+.+..... ...+ . ......+.+.+.+
T Consensus 866 --~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~---------~~~~-~----~~~~~~i~~~l~~ 929 (972)
T PRK06149 866 --KLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQ---------TLEP-A----TEETAAICDRLLE 929 (972)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcc---------cCCC-C----hHHHHHHHHHHHh
Confidence 45666667777777777654 112222211 12334444432100 0000 0 1234567788888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+|.+ +.+.. ....+|||.+. .-.|++||+.++++|.+.+.+
T Consensus 930 ~Gvl-~~~~g-~~~~vl~~~Pp-l~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 930 LGVI-MQPTG-DHLNILKIKPP-LCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCeE-EeecC-CCCCEEEEECC-CcCCHHHHHHHHHHHHHHHHh
Confidence 8854 43321 11368999855 568999999999999988754
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-08 Score=90.47 Aligned_cols=200 Identities=13% Similarity=0.012 Sum_probs=120.1
Q ss_pred EEEEeccCCcccccCChHHHHHH---HHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEE
Q 046506 47 FLCATIGTTAITAVDTLKPLCDV---AKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCC 122 (310)
Q Consensus 47 ~v~~~~~~~~~G~~~pl~~I~~l---~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~ 122 (310)
.+++..++|++|.+.+.+++.++ |++++.++++|.++.-+... +...... ...+ =++..|..|.++.| .-+|+
T Consensus 133 ~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~s~~~~~-~~~~-vi~l~SfSK~~gl~GlRiGy 209 (339)
T PRK06959 133 HLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-ASLAAHT-DRPG-LVVLRSVGKFFGLAGVRAGF 209 (339)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-ccchhcc-CCCC-EEEEecChhhcCCcchheEE
Confidence 57777889999999886666554 66789999999998654311 1111111 1011 15668999998755 44676
Q ss_pred EEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Q 046506 123 LWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLV 201 (310)
Q Consensus 123 l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L 201 (310)
++. +++.+........++.. ..+...++...+.. +..++..++..+..+++.+.|
T Consensus 210 ~v~-~~~li~~l~~~~~~~~v-----------------------s~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L 265 (339)
T PRK06959 210 VLA-APALLAALRDALGAWTV-----------------------SGPARHAVRAAFADAAWQAAMRERLAADGARLAALL 265 (339)
T ss_pred Eec-CHHHHHHHHHhcCCCCC-----------------------cHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 45444333221111110 11222233333322 345566777788888999999
Q ss_pred cCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEcc
Q 046506 202 GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAG 281 (310)
Q Consensus 202 ~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~ 281 (310)
+++ ++++. +..+.+.+.... ..++.+.|.++|... .. ....+++|+|+.
T Consensus 266 ~~~-g~~~~--~~~~f~~~~~~~-------------------------~~~l~~~l~~~GI~v-r~--~~~~~~lRisi~ 314 (339)
T PRK06959 266 RAH-GFAVH--ATPLFSWTDDPR-------------------------AAALHAALARRGIWT-RY--FAPPPSVRFGLP 314 (339)
T ss_pred HHC-CCCcc--CcceEEEEeCCC-------------------------HHHHHHHHHhCCeEE-EE--CCCCCeEEEECC
Confidence 887 77664 223333333321 135777788887543 22 234468999943
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhc
Q 046506 282 ATLTEERHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 282 ~~~~t~edi~~li~~l~~~~~~~~~~ 307 (310)
.++++.++++++|+++.+.+...
T Consensus 315 ---~~~~e~~~l~~al~~~~~~~~~~ 337 (339)
T PRK06959 315 ---ADEAEWQRLEDALAECVPTLAAA 337 (339)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHhhc
Confidence 35779999999999998887654
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-08 Score=90.32 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=125.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|+. ++.||.+ ++++++. . +.++++..++|+||.+.+ +++|+++|+++|+++++
T Consensus 103 ~~~~g~~---~~~v~~~----------~~~~~~~-~------~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~ 162 (330)
T PRK05664 103 WRRAGHQ---VRELDEA----------EVEAALD-S------LDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVV 162 (330)
T ss_pred HHHcCCe---EEEechh----------hHhhhhc-C------CCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 4556665 6666653 3455553 2 225677788899999888 55566677899999999
Q ss_pred ecccccccccChhhhhhhcCCCCCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++..+. +.+.. ..+..-| ++..|..|.++.| .-+|+++. ++..+.........+..
T Consensus 163 DE~y~~~~-~~~s~----~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~-~~~l~~~~~~~~~~~~~------------- 223 (330)
T PRK05664 163 DEAFMDNT-PQHSL----AACAHRPGLIVLRSFGKFFGLAGARLGFVLA-EPALLRALAELLGPWTV------------- 223 (330)
T ss_pred ECCcccCC-Ccccc----cccccCCCEEEEeeccccccCCCcceEEEEe-CHHHHHHHHHhcCCCCC-------------
Confidence 99985332 11111 1111112 5779999999744 45677665 45444333211111110
Q ss_pred CceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
......++...+. .+..++..++..+..+.+.+.|.+. +++.. ......+.+... +
T Consensus 224 ----------~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-~~~~~f~~~~~~--~--------- 280 (330)
T PRK05664 224 ----------SGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH-GLTPA-GGCALFQWVRTE--D--------- 280 (330)
T ss_pred ----------CHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCcceEEEEecC--C---------
Confidence 1111122222222 2334566677777888899999876 55422 111233333322 1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.+.+.|.... . ....+.+|+++.. ++++.++++++|+.+.++
T Consensus 281 --------------~~~~~~~l~~~gi~v~-~--f~~~~~iRis~~~---~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 281 --------------AAALHEFLARRGILTR-L--FEQPASLRFGLPA---DEADWARLDQALLAYRKE 328 (330)
T ss_pred --------------HHHHHHHHHHCCeEEE-E--CCCCCeEEEECCC---CHHHHHHHHHHHHHHHhh
Confidence 1356677777775443 2 2245689999552 578899999999887654
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-08 Score=101.89 Aligned_cols=235 Identities=12% Similarity=0.050 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccCh-hhhhhhcCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICP-EFRHFIDGVEGA 103 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~-~~~~~~~~~~~~ 103 (310)
+.+++.|......+..+..+++.-.....|.+.| ++++.++|++||+++++|..+.++...+. .+.-...++ ..
T Consensus 769 ~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv-~P 847 (1013)
T PRK06148 769 ESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGV-VP 847 (1013)
T ss_pred HHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCC-Cc
Confidence 4577777542222233556677666666788777 99999999999999999999966543332 111001233 37
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|++++ .|.+++....|.+..+++ .. +.+.....+. + + -++-+..+.+..++++.+..
T Consensus 848 Divt~--gK~lggG~Plgav~~~~e-i~-~~~~~g~~~~-~--------------T-f~gnpla~aaa~a~L~~i~~--- 904 (1013)
T PRK06148 848 DIVTM--GKPIGNGHPMGAVVTTRE-IA-DSFDNGMEYF-N--------------T-FGGNPVSCAIGLAVLDIIED--- 904 (1013)
T ss_pred ceeee--cccccCCcceEEEEEcHH-HH-hhccCCCccc-c--------------C-CCCCHHHHHHHHHHHHHHhh---
Confidence 88777 798887667888877644 32 3322110111 0 1 11212233344445554433
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCeEEecCC-C-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSHVNMAKLFERLVGSD-KRFEVVFPR-H-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
++..++..++.++|+++|+++ ....++... . ..++.+.+...... ..+ .......+.+.+.++
T Consensus 905 e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~-----------~~~---~~~~~~~i~~~~~~~ 970 (1013)
T PRK06148 905 EDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKT-----------KAP---ATAIARYVKNGARER 970 (1013)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccc-----------cCc---cHHHHHHHHHHHHhC
Confidence 345666777777887777654 122222211 1 23344544321100 000 022345677888888
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|.+. .+.. ....++||.++ .-+|++|||.++++|.+.+.++
T Consensus 971 Gvl~-~~~g-~~~~vlr~~Pp-l~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 971 GILI-GTEG-PHDNVLKIRPP-LIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred CeEE-eccC-CCCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 8544 3221 12468999955 6799999999999999988764
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-08 Score=95.43 Aligned_cols=268 Identities=12% Similarity=0.093 Sum_probs=138.3
Q ss_pred EEEEecCCCCC-----cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHh--CcEEEeecc
Q 046506 13 FRAIKTTKSSS-----YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQF--GIWVHVDAA 82 (310)
Q Consensus 13 v~~v~~~~~~~-----~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~--g~~l~vD~a 82 (310)
++.|++++.+. |.+|+++|++++++. +.+++++.++|++|.+.+ +++|+++|++| ++++++|.+
T Consensus 210 vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~------~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEv 283 (521)
T TIGR03801 210 VVRIKADEMTEDGTHTWQYPDKELEKLRDPS------IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDV 283 (521)
T ss_pred EEEeecccccccccccCCCCHHHHHHhcCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 67777765322 789999999887654 347777789999999987 77788899987 899999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhcc---------CCcccccc-cccccc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLST---------NPEYLKNK-ATESKQ 151 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~---------~~~y~~~~-~~~~~~ 151 (310)
++..... +.........--+++.|..|.++.| .-+|+++..+...+++.... ...|-.-. .+..-.
T Consensus 284 Y~~f~~~---~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~ 360 (521)
T TIGR03801 284 YGTFVDD---FRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLK 360 (521)
T ss_pred chhhccc---ccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhh
Confidence 9754321 1111111111125668999998654 44667665543222111100 00010000 000000
Q ss_pred ccC-----CC---C-ceeccCCCc-chHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe-cCCCceEE
Q 046506 152 VVD-----YK---D-WQITLSRRF-RSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVV-FPRHFAVV 218 (310)
Q Consensus 152 ~~~-----~~---~-~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v 218 (310)
.+| .+ . .+.-.+.+. ...++.++...+ .....++..+.+.+..+.+.+.| |+.+. .++.....
T Consensus 361 fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L----g~~~~~~~~~g~~Y 436 (521)
T TIGR03801 361 FIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL----GLPLQEDPNDVAYY 436 (521)
T ss_pred hHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc----CCCCcCCCCCeEEE
Confidence 000 00 0 000001111 111211222222 23345566667777777777777 33321 24454433
Q ss_pred E-EEEcCCcchhhhhhhhccccchhHHHHHH-----HHHHHHHHHHhc-CcEEEEEeEEC-CEeEEEEEccCCCCCHHHH
Q 046506 219 C-FRVSPSAVMDKLKTKYENSLLSEEERINE-----FNRELLESINAS-GKAYMTHAVLG-GIYAIRFAAGATLTEERHV 290 (310)
Q Consensus 219 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~-g~~~~~~~~~~-~~~~iRis~~~~~~t~edi 290 (310)
. +.+.... ...++ .+...- -..++..+|.++ |...+++...+ ....+|+|+.+ .+++++
T Consensus 437 ~~~di~~~~-----~~~~~------~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~--l~~~~~ 503 (521)
T TIGR03801 437 TLIDLEEWA-----EKNYG------EEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLAN--LNEYDY 503 (521)
T ss_pred EEeehHHHH-----HHhcc------hHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecC--CCHHHH
Confidence 3 3332210 00000 000000 123566666655 44444444333 24579999763 678899
Q ss_pred HHHHHHHHHHHHHHhh
Q 046506 291 MVAWTVVQEHLEALLS 306 (310)
Q Consensus 291 ~~li~~l~~~~~~~~~ 306 (310)
..+.+.|++++.+...
T Consensus 504 ~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 504 AEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=92.13 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=122.3
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeeccccccccc-c
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL-D 119 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g 119 (310)
+..|++.-.....|.+.| ++++.++|++||+++++|..+.++......+.....++ ..|++++ .|.+++.+ .
T Consensus 214 iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~P 290 (449)
T PRK07481 214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV-KPDIMCL--AKGITSGYVP 290 (449)
T ss_pred EEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC-CCCEEEE--eecccCCCcC
Confidence 456666666666677666 99999999999999999999876544332221111233 3788777 68887542 4
Q ss_pred eEEEEEeCchhHHhhhccCCc---cccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 046506 120 CCCLWVKDPSDLVNSLSTNPE---YLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKL 196 (310)
Q Consensus 120 ~g~l~v~~~~~~~~~~~~~~~---y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 196 (310)
.|.+.++++ .. +.+..... .+.... + .++.+....+..++++.+.+ ++..++..++.++
T Consensus 291 i~av~~~~~-i~-~~~~~~~~~~~~~~h~~------------T-~~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~ 352 (449)
T PRK07481 291 LGATMVNAR-IA-DAFEANADFGGAIMHGY------------T-YSGHPVACAAALATLDIVVR---EDLPANAAKRGAY 352 (449)
T ss_pred ceEEEEcHH-HH-HHHhccCccccccccCC------------C-CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Confidence 677776654 32 33321100 000000 0 11122233444445554433 3456666677777
Q ss_pred HHHHHcCCC-CeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCE
Q 046506 197 FERLVGSDK-RFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGI 273 (310)
Q Consensus 197 l~~~L~~~~-~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ 273 (310)
|++.|+++. ...++... ...++.+.+..... ...+.+. .......+...+.++|.+. .+. +
T Consensus 353 l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~Gvl~-~~~---g- 416 (449)
T PRK07481 353 LLEGLQPLKERFELVGDVRGKGLMLALDLVADKA---------TREPIDP--SKGYANAVADVARENGVLV-RPS---G- 416 (449)
T ss_pred HHHHHHHHhhcCCCeEEEeecceEEEEEeccccc---------ccCCCCc--hhHHHHHHHHHHHhCCeEE-Eec---C-
Confidence 777776541 22222221 12344454432100 0000000 0123456777788888543 322 2
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 274 YAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 274 ~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..+|+++. ...|++|||.+++++.+.+.++
T Consensus 417 ~~i~l~Pp-l~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 417 TKIILSPP-LVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 35899855 4579999999999999988764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-08 Score=91.08 Aligned_cols=242 Identities=13% Similarity=0.069 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCC-cccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTT-AITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++++++|.... ......|++.-... ..|.+.| +++|.++|++||+++++|..+.++......+.....++ ..
T Consensus 186 ~~l~~~~~~~~--~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~P 262 (443)
T PRK07483 186 DELEAKILELG--PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV-AP 262 (443)
T ss_pred HHHHHHHHhcC--CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC-CC
Confidence 56676665311 11234455544432 3466655 89999999999999999999876654443322111233 37
Q ss_pred Ceeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|++++ .|.+++.+ ..|.+.++++ .. +.+...+..+...+ + .++-+....+..++++.+.+
T Consensus 263 Div~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~h~~------------T-~~gnpl~~aaa~a~l~~i~~-- 323 (443)
T PRK07483 263 DLVTI--AKGLGAGYQPIGAVLASDR-IY-DAIADGSGFFQHGH------------T-YLGHATACAAALAVQRVIAE-- 323 (443)
T ss_pred Ceeee--hhhhccCccccEEEEEcHH-HH-HHHhcCCCccccCC------------C-CCCCHHHHHHHHHHHHHHHh--
Confidence 88887 68887653 5777777655 32 33321111111100 0 01112223334444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+...++..++.++|++.|+++ ....++... ...++.+.+..... ...+.+. -......+.+.+.+
T Consensus 324 -~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~ 391 (443)
T PRK07483 324 -DGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRA---------TKAPFDP--ALKLHARIKREAMA 391 (443)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeeccc---------ccCCCCc--hhhHHHHHHHHHHH
Confidence 345666667777777777642 222222221 12334444432100 0000010 01234567778888
Q ss_pred cCcEEEEEe-EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 260 SGKAYMTHA-VLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 260 ~g~~~~~~~-~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+|.+..... ... ...++||.++ ...|++|||.++++|.+.+.++.
T Consensus 392 ~Gll~~~~~~~~~~~~~~~l~~~Pp-L~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 392 RGLMVYPMGGTIDGVRGDHVLLAPP-FIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred CCcEEEecCccccCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 886543211 000 1358999955 67999999999999999987754
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-08 Score=89.00 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
+|++.|++.+.+ +..+++..++|++|.+.+ +++|+++|+++|+++++|.+++.+..... . .. ..
T Consensus 106 ~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~---~-~~--~~ 172 (311)
T PRK08354 106 NDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE---S-PE--GE 172 (311)
T ss_pred CCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc---c-cC--CC
Confidence 678888888752 226777788999999877 56677888999999999999965433211 0 01 11
Q ss_pred CCeeeeecccccccc-cceEEEEE
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWV 125 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v 125 (310)
--++..|..|.++.| .-+|+++.
T Consensus 173 ~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 173 NIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred cEEEEeccHhhcCCccceeeeeee
Confidence 235668889999855 34676665
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=95.50 Aligned_cols=268 Identities=12% Similarity=0.082 Sum_probs=136.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH--hCcEEEeeccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ--FGIWVHVDAAYAGSA 87 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~--~g~~l~vD~a~~~~~ 87 (310)
++.++.++.+.+.+|+++|++++++. +.+++++.++|++|.+.+ +++|+++|++ +++++++|.+++-..
T Consensus 216 ~v~v~~~~~~~f~~d~~~l~~~~~~~------tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~ 289 (527)
T PRK09275 216 VVHINADEENEWQYPDSELEKLRDPS------IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV 289 (527)
T ss_pred EEEeecCcccCCCCCHHHHHhhcCCC------CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhc
Confidence 45555555445899999999988654 347778889999999887 7788899965 599999999997543
Q ss_pred ccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccC---------Ccccccc-ccccccccC--
Q 046506 88 CICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTN---------PEYLKNK-ATESKQVVD-- 154 (310)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~---------~~y~~~~-~~~~~~~~~-- 154 (310)
.. +.........--+++.|..|.++.| .-.|++...++..+++....- ..|-.-. .+..-..++
T Consensus 290 ~~---~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrl 366 (527)
T PRK09275 290 DD---FRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRL 366 (527)
T ss_pred cc---ccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHH
Confidence 21 1111111111235668889998755 335666654432221111000 0010000 000000000
Q ss_pred ---CC---Cc-eeccCCCc-chHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEE-EEc
Q 046506 155 ---YK---DW-QITLSRRF-RSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCF-RVS 223 (310)
Q Consensus 155 ---~~---~~-~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~-~~~ 223 (310)
.+ .. +.-.+.+. .++++.+....+ .....++..+.+.+..+.+.+.|. . .+.. .+|......| .+.
T Consensus 367 vad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~-~~p~g~fY~~~di~ 443 (527)
T PRK09275 367 VADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGLG-L-PEPE-DPNNAAYYTLIDLE 443 (527)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcC-C-CCcC-CCCCeeEEEEEEhH
Confidence 00 00 00001110 111211111112 233456666777777777777773 2 2221 2455544433 232
Q ss_pred CCcchhhhhhhhccccchhHHHHH-----HHHHHHHHHHHhcCcE-EEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHH
Q 046506 224 PSAVMDKLKTKYENSLLSEEERIN-----EFNRELLESINASGKA-YMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTV 296 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~g~~-~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~ 296 (310)
... ...+ +.+... .-..++..+|.++..+ .+++...+ ..+.+|+|+.+ .+++++..+.+.
T Consensus 444 ~~~-----~~~~------g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~--~~~~~~~~~~~r 510 (527)
T PRK09275 444 EWA-----EKNY------GKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLAN--LNEEDYAKIGKA 510 (527)
T ss_pred Hhh-----hhcc------CchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEec--CCHHHHHHHHHH
Confidence 210 0000 000000 0023555666655444 44444333 35689999764 688899999999
Q ss_pred HHHHHHHHh
Q 046506 297 VQEHLEALL 305 (310)
Q Consensus 297 l~~~~~~~~ 305 (310)
|++++.+..
T Consensus 511 l~~~l~~y~ 519 (527)
T PRK09275 511 IRKLLDEYY 519 (527)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=90.01 Aligned_cols=239 Identities=10% Similarity=0.036 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEec-cCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATI-GTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
++++++.|... +.....|++.- .....|.+.| +++|.++|++||+++++|..+.+.......+.....++ .
T Consensus 201 l~~le~~~~~~---~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv-~ 276 (466)
T PRK07030 201 FAHMEQTLAEH---HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI-R 276 (466)
T ss_pred HHHHHHHHHhC---CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC-C
Confidence 56677777632 12244555554 3444566554 88999999999999999999876644433221112233 3
Q ss_pred CCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.+++.+ ..|.+.++++ .. +.+....+-.... ....++ ++-+....+..++++.+.+
T Consensus 277 PDiv~~--gKgl~gG~~Pi~av~~~~e-i~-~~~~~~~~~~~~~---------~h~~T~-~gnpla~aaa~a~L~~i~~- 341 (466)
T PRK07030 277 PDFLCL--SKALTGGYLPLAAVLTTDT-VY-QAFYDDYPTLRAF---------LHSHSY-TGNPLACAAALATLDIFEQ- 341 (466)
T ss_pred CCEEee--ehhccCCcccceEEEecHH-HH-HHHhccccccccc---------ccCCCC-CCCHHHHHHHHHHHHHHHh-
Confidence 799888 68877653 5677766544 32 3321110000000 000011 1112233344445554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-C-CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-R-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
++..++..++.++|++.|+++.....+.. . ....+.+.+..... ...+... . ......+...+.+
T Consensus 342 --~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~---------~~~~~~~-~-~~~~~~i~~~~~~ 408 (466)
T PRK07030 342 --DNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKA---------SKTPYPW-Q-ERRGLKVYQHALE 408 (466)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCcc---------ccccCcc-h-hHHHHHHHHHHHH
Confidence 34567777788888888866522222221 1 22334454432100 0000000 0 1223467777888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|.+ +.+. + .++|+.++ .-.|++||+.+++.+.+.+..+
T Consensus 409 ~Gvl-~~~~---g-~~i~~~Pp-l~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 409 RGAL-LRPL---G-SVVYFLPP-YVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCeE-EEec---C-CEEEEECC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 8854 3332 2 47999855 6799999999999999998876
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-08 Score=84.53 Aligned_cols=247 Identities=15% Similarity=0.113 Sum_probs=138.8
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc---cCChHHHHHHHHHhCcEEEeeccccc-ccccCh----hhh
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITA---VDTLKPLCDVAKQFGIWVHVDAAYAG-SACICP----EFR 94 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~---~~pl~~I~~l~~~~g~~l~vD~a~~~-~~~~~~----~~~ 94 (310)
+|.+|++.|++.|++-..++ .|.+++..++++..|. +.+++++.++|++|++++++|+|.-+ .+++.. .++
T Consensus 166 KGd~D~~kLe~lidevG~~n-vp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYr 244 (471)
T COG3033 166 KGNFDLEKLERLIDEVGADN-VPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYR 244 (471)
T ss_pred CCccCHHHHHHHHHHhCccc-CcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccc
Confidence 34799999999998865443 4666666667777775 46689999999999999999998633 233321 121
Q ss_pred h-----hh-cCCCCCCeeeeecccccccccceEEEEEeCchhH---HhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 95 H-----FI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDL---VNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 95 ~-----~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+ .. +-++++|-+++|+-|=..++. .|+++.+++..+ ..+.....-+ .+.+.|+- -.||.
T Consensus 245 d~sI~~IarEm~sYaD~~~mS~KKD~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~--------eG~~tYGg---l~Grd 312 (471)
T COG3033 245 DWSIEEIAREMYSYADGCTMSAKKDGLVNM-GGFLCFKDDSFFDVYEECRTLVVVQ--------EGFPTYGG---LAGRD 312 (471)
T ss_pred cccHHHHHHHHHhhhhhheeeccccceecc-ccEEEecCccHHHHHHHHHhheEee--------ccccccCc---ccchh
Confidence 1 11 124679999999999888776 467788888532 1111111000 01111110 11222
Q ss_pred cchHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHH
Q 046506 166 FRSLKLWFVLRN-YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEE 244 (310)
Q Consensus 166 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
..++ +..|.. +..+.+ ++..+-.+||.++|.+. |++++-|....-+.+..... |...-.+|-
T Consensus 313 meal--AvGL~e~~~~~yl----~~Rv~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~-----lphip~eqF----- 375 (471)
T COG3033 313 MEAL--AVGLREGVNFDYL----AHRVAQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKF-----LPHIPAEQF----- 375 (471)
T ss_pred HHHH--HHHHHHhcCcHHH----HHHHHHHHHHHHHHHhc-CCeeEecCCCceEEeehhhh-----cCCCChhhC-----
Confidence 2221 122211 122333 34444567788888876 89888666665554443321 000111110
Q ss_pred HHHHHHHHHHHHHHhc-CcEEEEEe------EEC-------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 245 RINEFNRELLESINAS-GKAYMTHA------VLG-------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 245 ~~~~~~~~l~~~l~~~-g~~~~~~~------~~~-------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
- ++.+.-.|... |+-.+.-. ..+ .-..+|+.+...--|.+++|.++++++.+.+.
T Consensus 376 p----aqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 376 P----AQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred c----HHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 1 13343334333 33222211 111 12689999886556788999999999998765
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=89.37 Aligned_cols=225 Identities=13% Similarity=0.079 Sum_probs=123.9
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...|++.-.....|.+.| ++++.++|++||+++++|..+.++......+.....++ ..|++++ .|.+++.+..
T Consensus 226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv-~PDivt~--gK~l~gG~Pi 302 (459)
T PRK06931 226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI-EPDIIVM--SKAVGGGLPL 302 (459)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC-CCCEEEe--cccccCCcce
Confidence 445555555555566554 88999999999999999999876654443222111233 3788887 6887765556
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|.+..++. + +.+. +....+ ++ ++-+..+.+..++++.+..+ ...++..++.++|++.
T Consensus 303 ~av~~~~~--~-~~~~--~~~~~~--------------T~-~gnpla~aaala~L~~l~~~---~l~~~~~~~G~~l~~~ 359 (459)
T PRK06931 303 AVLGIKKE--F-DAWQ--PGGHTG--------------TF-RGNQLAMATGLTTLKILKEE---NLAQNAAERGEWLKAQ 359 (459)
T ss_pred eeeeeHHH--H-hhcc--CCCCCC--------------CC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 76655432 2 2221 111100 11 12222334444555544333 3556666677777777
Q ss_pred HcCC-CCeEEecCC--CceEEEEEEcCCcchhhhhhhhcc-ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 201 VGSD-KRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYEN-SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 201 L~~~-~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
|+++ ....++... ...++.+.+...... ++.. ..+.+ ......+...+.++|.+. .+.. ....++
T Consensus 360 L~~l~~~~~~i~~vrG~Glm~giel~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~Gvl~-~~~~-~~~~~l 428 (459)
T PRK06931 360 LAELQKRYPCIGNVRGRGLMIGIEIVDERQP-----ADAMGSYPAD----GELAAAIQKACFENGLLL-ERGG-RNGNVV 428 (459)
T ss_pred HHHHHHhCCCeEeEecCceEEEEEEccCccc-----ccccccCCcc----HHHHHHHHHHHHHCCcEE-eecC-CCCCEE
Confidence 7653 122222221 233444555321000 0000 00001 123356777788888544 3221 124689
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~~~~~ 307 (310)
|+.++ ...|++||+.+++++.+.+..+.|.
T Consensus 429 ~~~Pp-l~it~~eid~~~~~l~~~l~~~~~~ 458 (459)
T PRK06931 429 RLLPP-LLITQAECEEFIDRFEQALLAAVKA 458 (459)
T ss_pred EEECC-CCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 99855 6799999999999999999876653
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-07 Score=86.09 Aligned_cols=233 Identities=12% Similarity=0.016 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++++++.+.... .+..+..|++.-.....|.+.| +++|.++|++||+++++|.++.+.........-...++ ..
T Consensus 183 ~~~l~~~~~~~~-~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv-~p 260 (425)
T PRK07495 183 LAALDKLFKADV-DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEV-AA 260 (425)
T ss_pred HHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCC-CC
Confidence 344566664311 1122445666555555675543 88999999999999999999875433322110000112 25
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|+ .+..|.+++....|++..+++ .. +.+. +..... ++ ++-+..+.+..++++.+..+
T Consensus 261 Di--~tlsK~l~~G~pigav~~~~~-i~-~~~~--~~~~~~--------------T~-~~~pl~~aaa~a~l~~l~~~-- 317 (425)
T PRK07495 261 DL--TTMAKGLAGGFPLAAVTGRAE-IM-DAPG--PGGLGG--------------TY-GGNPLGIAAAHAVLDVIEEE-- 317 (425)
T ss_pred CE--EeehhhhcCCccceEEEEcHH-HH-hccC--CCCcCC--------------CC-CCCHHHHHHHHHHHHHHHhc--
Confidence 65 445798876555677766433 32 3221 110000 11 11122333344566555333
Q ss_pred HHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 184 RHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
...++..++.++++++|+++ |.+.=+... ...+.+.+.+... . ... ......+.+.+.+
T Consensus 318 -~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-Gl~~~iel~~~~~----------~--~~~---~~~~~~~~~~~~~ 380 (425)
T PRK07495 318 -DLCERANQLGNRLKQRLASLRETVPEIADIRGP-GFMNAVEFNDADS----------G--LPS---AEFANRVRLKALE 380 (425)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC-ceEEEEEEecCCC----------C--Ccc---HHHHHHHHHHHHH
Confidence 34555556666666666543 322111111 3344555543210 0 000 1234567777888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+|.+. .+... ...++||.+. ...|++++|.+++.|.+.+.++.
T Consensus 381 ~Gvl~-~~~g~-~~~~~r~~Pp-l~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 381 KGLIL-LTCGV-HGNVIRFLAP-ITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred CCeEE-eecCC-CCCEEEEeCC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 88543 32211 1368999955 67999999999999999987753
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=89.81 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEec-cCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATI-GTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
+++.+++.+... +.....|++.- .....|.+.| ++++.++|++||+++++|..+.+.......+.....++
T Consensus 222 ~~~~l~~~~~~~---~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv- 297 (472)
T PRK08742 222 AADALQALFEQS---PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV- 297 (472)
T ss_pred HHHHHHHHHHhC---CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC-
Confidence 356777777532 11244455543 2444566544 88999999999999999999876654443222111233
Q ss_pred CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCC--ccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 102 GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNP--EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
..|++++ .|.+++.+ ..|.++++++ .. +.+.... ...... .++ ++-+....+..++++.+
T Consensus 298 ~PDiv~~--gKgl~gG~~Plaav~~~~e-i~-~~~~~~~~~~~~~h~------------~T~-~gnpl~~Aaa~a~L~~i 360 (472)
T PRK08742 298 MPDLLCL--SKGLTGGFLPLSAVLATQQ-LY-DAFLDDSRERAFLHS------------HSY-TGNPLACAAALATLDIF 360 (472)
T ss_pred CCCEEEE--cccccCCCCCcceeeccHH-HH-HHhhccCccCccCcC------------CCC-CccHHHHHHHHHHHHHH
Confidence 3798888 68887542 4677766544 32 3221110 000000 011 11122334444555555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
.+++ ..++..++.+++.+.+..+....++... ....+.+.+..... ...+... . ......+.+.
T Consensus 361 ~~~~---l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~---------~~~~~~~-~-~~~~~~~~~~ 426 (472)
T PRK08742 361 ADDD---VIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGN---------KRTPFPP-A-ARVGLHAYRA 426 (472)
T ss_pred HHCC---HHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCcc---------ccccCCc-h-hHHHHHHHHH
Confidence 4433 3445555555555554433222222221 12334454432100 0000000 0 1223456677
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.++|.+. .+. + .+|||.+. ...|++||+.+++.|.+.+.++
T Consensus 427 ~~~~Gll~-~~~---g-~vi~~~Pp-L~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 427 ALARGVVL-RPL---G-DVLYWMPP-YCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred HHHCCeEE-Eec---C-CEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 77888543 332 2 58999955 6799999999999999998765
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-08 Score=90.08 Aligned_cols=231 Identities=10% Similarity=0.013 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC-C---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD-T---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~-p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
++.+++.+.+.. ....+..|+++-..++.|... | +++|.++|++||+++++|..+.+.........-...++ ..
T Consensus 183 ~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~p 260 (421)
T PRK09792 183 LDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KP 260 (421)
T ss_pred HHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC-CC
Confidence 477787776421 011245666666667778654 6 99999999999999999999876544332111001112 36
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|+ .+..|.+++....|.++.+++ .. +.+.. ..... ++ .+-+....+..++++.+..+
T Consensus 261 Di--~t~gK~l~~G~pigav~~~~~-i~-~~~~~--~~~~~--------------T~-~gnpl~~aaa~a~l~~l~~~-- 317 (421)
T PRK09792 261 DL--MTMAKSLAGGMPLSGVVGNAN-IM-DAPAP--GGLGG--------------TY-AGNPLAVAAAHAVLNIIDKE-- 317 (421)
T ss_pred cE--EEeehhhcCCCceEEEEEcHH-HH-hccCC--CCcCC--------------CC-CCCHHHHHHHHHHHHHHHhh--
Confidence 75 455899986566777765433 32 22210 00000 11 11112233334555555333
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCeEEecC-CC-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSHVNMAKLFERLVGSD-KRFEVVFP-RH-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+..++..++.+++.+.|.++ ..+..+.. .. ...+.+.+.+... ..+ . ......+...+.++
T Consensus 318 -~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~-------------~~~-~-~~~~~~l~~~~~~~ 381 (421)
T PRK09792 318 -SLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQT-------------GEP-S-AAIAQKIQQRALAQ 381 (421)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCcc-------------CCc-c-hHHHHHHHHHHHHC
Confidence 45556666777776666543 11211222 22 3455555543210 000 0 12345677788888
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
|.+. .+. -....+||+.++ .-.+++||+.++++|.+.+.
T Consensus 382 Gv~i-~~~-g~~~~~irl~P~-l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 382 GLLL-LTC-GAYGNVIRFLYP-LTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred CcEE-eec-CCCCCEEEEeCC-CcCCHHHHHHHHHHHHHHHh
Confidence 8654 221 012478999855 45899999999999988763
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-08 Score=90.64 Aligned_cols=210 Identities=10% Similarity=0.005 Sum_probs=114.7
Q ss_pred cEEEEEecc-CCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccc-c
Q 046506 45 PLFLCATIG-TTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-L 118 (310)
Q Consensus 45 ~~~v~~~~~-~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~ 118 (310)
...|++.-. ....|.+. .+++|.++|++||+++++|.+|.+.......+.....++ ..|++++ .|.+++. .
T Consensus 201 iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDi~t~--gK~l~gG~~ 277 (422)
T PRK05630 201 VAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGV-TPDIMCV--GKALTGGFM 277 (422)
T ss_pred eEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCC-CCCeeee--echhhcCcc
Confidence 334554432 33445543 389999999999999999999865543332211111233 3788855 7988553 2
Q ss_pred ceEEEEEeCchhHHhhhccC--CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 046506 119 DCCCLWVKDPSDLVNSLSTN--PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKL 196 (310)
Q Consensus 119 g~g~l~v~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 196 (310)
..|++.++++ .. +.+... ...+... .++ ++-+..+.+..++++.+..+ ...++..++.++
T Consensus 278 p~~av~~~~~-i~-~~~~~~~~~~~~~h~------------~T~-~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~ 339 (422)
T PRK05630 278 SFAATLCTDK-VA-QLISTPNGGGALMHG------------PTF-MANPLACAVAHASLEIIETG---MWRKQVKRIEAE 339 (422)
T ss_pred ccceeeccHH-HH-HHHhccCCCCccccC------------CCC-cCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHH
Confidence 3455555443 22 333110 0000000 011 12222334445556555333 345677778888
Q ss_pred HHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEe
Q 046506 197 FERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIY 274 (310)
Q Consensus 197 l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~ 274 (310)
|++.|+.+.....+... ...++.+.+.... . ...+.+.+.++|.+ +.+. + .
T Consensus 340 l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~--------------------~--~~~~~~~~~~~Gl~-~~~~---g-~ 392 (422)
T PRK05630 340 LIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV--------------------D--MEEATQAAVDHGVW-LRPF---G-R 392 (422)
T ss_pred HHHHHHHhhcCCCeeeeeccccEEEEEECCcc--------------------c--HHHHHHHHHHCCeE-EEec---C-C
Confidence 88877653222112111 2445556554320 0 13566677788754 4332 2 5
Q ss_pred EEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 275 AIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 275 ~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
++|+.+. ...|++|||.++++|++.+..
T Consensus 393 ~l~~~Pp-L~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 393 LVYVMPP-YITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred EEEEECC-ccCCHHHHHHHHHHHHHHHhc
Confidence 8999955 679999999999999987753
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-07 Score=87.69 Aligned_cols=243 Identities=12% Similarity=0.030 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCC-cccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTT-AITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
++.+++.+..... .....|++.-... ..|.+.| +++|.++|++||+++++|.++.++......+.....++ .
T Consensus 185 ~~~le~~i~~~~~--~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv-~ 261 (447)
T PRK06917 185 ATELETAIERIGA--EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGV-E 261 (447)
T ss_pred HHHHHHHHHhcCC--CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCC-C
Confidence 4667777764211 1234455544333 3345544 88999999999999999999875533333221111233 3
Q ss_pred CCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.+++.+ ..|.+..+++ .. +.+......+...+ + ..+-+....+..++++.+..
T Consensus 262 PDi~~~--gK~l~~G~~Pi~a~~~~~~-i~-~~~~~~~~~~~~~~------------T-~~gnpl~~aaa~a~l~~l~~- 323 (447)
T PRK06917 262 PDIMTL--GKGLGAGYTPIAATVVSDR-VM-EPILRGSRSIMSGH------------T-LSANPLSAATALAVLEYMEK- 323 (447)
T ss_pred CCEEEe--eehhccCCcceEEEEEcHH-HH-HHHhccCccccccc------------C-CCCCHHHHHHHHHHHHHHHH-
Confidence 788666 79887643 4666666543 32 33321111111100 0 01112233444455554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CeEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDK-RFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
++..++..++.++|++.|+++. ...++... ...++.+.+...... + .+.. ........+...+.
T Consensus 324 --~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~---~------~~~~--~~~~~~~~~~~~~~ 390 (447)
T PRK06917 324 --HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKT---K------QPFS--KSQAVASELISVAA 390 (447)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCc---C------CCCc--chhHHHHHHHHHHH
Confidence 2456677777777777776541 22222221 233444544321000 0 0000 00234456777888
Q ss_pred hcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 259 ASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 259 ~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
++|.+. .+... ....++|+++. ...|++|||.+++++.+.+.++.+
T Consensus 391 ~~Gvl~-~~~~~~~~g~~~~~i~l~Pp-l~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 391 KNGLLL-YPAVAGQDGKEGDAVIIAPP-MTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred hCCcEE-EecccccCCCCCCEEEEECC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 888654 32211 12468999955 569999999999999999977644
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.7e-08 Score=87.15 Aligned_cols=239 Identities=11% Similarity=0.084 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++++.+... ....|++.-.-...|.+.| +++|.++|++||++|+.|....++-...-.... ..++ .
T Consensus 186 D~~al~~~~~~~g~---~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~-~~gi-~ 260 (432)
T COG0001 186 DLEALEEAFEEYGD---DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQG-YYGV-E 260 (432)
T ss_pred CHHHHHHHHHHcCC---cEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccc-ccCc-C
Confidence 78999999988632 2445555555566688877 778999999999999999988655443211111 1222 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH-H
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV-A 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 181 (310)
.|..++ .|.+++...+|.+--+ ++..+...+..+-|..++-. +-+....+..++++.+.. +
T Consensus 261 PDlttl--GKiIGGGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~s---------------gnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 261 PDLTTL--GKIIGGGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLS---------------GNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred cchhhh--hhhhcCCcceeeeccH-HHHHhhhCCCCCccccCCCC---------------CcHHHHHHHHHHHHHHHhcc
Confidence 677665 6888887777877544 33433222333333222110 001122333445554433 2
Q ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 182 N-LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 182 ~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+ |+.+.+.-.++.+-+.+.+.+. ++++......+.+.+.+.+..+.. +.+. ...+.+.+ ..+...|.++
T Consensus 323 ~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~i~F~~~~~~n-----~~da---~~sd~~~~-~~~~~~~l~~ 392 (432)
T COG0001 323 GVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFGIFFTEEGVRN-----YADA---KRSDVERF-AKFFHHLLNR 392 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEEEEecCCCCCC-----HHHH---HhhchHHH-HHHHHHHHhC
Confidence 2 4444444444444444444443 665543444556666666532110 0000 01122323 3344477788
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
|. ++.|..+ +.. +.+.-.|++|||+.++++.+....+.
T Consensus 393 GV-~l~ps~~--ea~----flS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 393 GV-YLAPSQF--EAG----FLSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred Cc-ccCCccc--cce----eeecccCHHHHHHHHHHHHHHHHHhh
Confidence 74 5554421 111 23345789999999999998887764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=91.05 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=120.0
Q ss_pred eecCCCCCCEEEEecC------CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhC
Q 046506 4 QIVGIDVKNFRAIKTT------KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFG 74 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~------~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g 74 (310)
.+.|-. .++|+.. -.+.+.+|++.||.+|++.|+ +|++..++|++|.+.+ |++|+++|++||
T Consensus 135 ~maG~t---pv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk------~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~ 205 (420)
T KOG0257|consen 135 VMAGGT---PVFVPLKPKEGNVSSSDWTLDPEELESKITEKTK------AIILNTPHNPTGKVFSREELERIAELCKKHG 205 (420)
T ss_pred hhcCCc---ceeeccccccccccCccccCChHHHHhhccCCcc------EEEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 455655 7778877 334689999999999999865 8999999999999755 999999999999
Q ss_pred cEEEeecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccc
Q 046506 75 IWVHVDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 75 ~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
++++.|.++........++-... .++-..-.-+.|+.|+++.. -=.|.++. +++++..........
T Consensus 206 ~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~---------- 274 (420)
T KOG0257|consen 206 LLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNF---------- 274 (420)
T ss_pred EEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhcc----------
Confidence 99999999854443332221110 11111233457888887752 23456655 555544333221111
Q ss_pred ccCCCCceeccCCCc-chH--HHHHHH--HHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEc
Q 046506 152 VVDYKDWQITLSRRF-RSL--KLWFVL--RNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS 223 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~-~~~--~~~~~l--~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~ 223 (310)
.+.+..++ .+. +....+ ..-+ ......+.+...++.+.+.+.|.++ |+++..+.....+...+.
T Consensus 275 -------~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs 344 (420)
T KOG0257|consen 275 -------VFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFS 344 (420)
T ss_pred -------ccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEecc
Confidence 11111121 111 111111 1111 1334457788889999999999998 999987766666666666
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-08 Score=90.81 Aligned_cols=244 Identities=16% Similarity=0.168 Sum_probs=146.7
Q ss_pred EEEEecCCCC----CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccc
Q 046506 13 FRAIKTTKSS----SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 13 v~~v~~~~~~----~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
-+++.+..|. -+.|+.+.+++.+.+..... + .++...+|..|++-++++|.++++++++|+.+|.+|++...
T Consensus 134 Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k-~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~ 209 (557)
T COG1982 134 PVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---K-LAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFD 209 (557)
T ss_pred eEEecCCCCccccccCCCCHHHHHHHHHhChhhh---e-eEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCccccc
Confidence 5555554432 13689999999998875421 2 44456677889999999999999999999999999988776
Q ss_pred cChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCc-----hhHHhhh----ccCCccccccccccccccCCCCce
Q 046506 89 ICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDP-----SDLVNSL----STNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 89 ~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~-----~~~~~~~----~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
..+.... ......+|+++-|.||.+++...++.+++++. +.+.+++ +.+|.|.-.
T Consensus 210 ~~~~l~~-~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~--------------- 273 (557)
T COG1982 210 FSPMLPE-SALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLM--------------- 273 (557)
T ss_pred ccccCcc-hhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHH---------------
Confidence 6544332 11114699999999999999999999999972 2222322 222222111
Q ss_pred eccCCCcchHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc--eEE----------EEEEcCCc
Q 046506 160 ITLSRRFRSLKLWFV-LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF--AVV----------CFRVSPSA 226 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~--~~v----------~~~~~~~~ 226 (310)
.++.++.. ....|..-+.+.++...+.++++++...++++|.++.++.. ..- .+.+.|..
T Consensus 274 -------ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K 346 (557)
T COG1982 274 -------ASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTK 346 (557)
T ss_pred -------HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccE
Confidence 11222111 11124444555678888888999999888888888865421 000 11222211
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 227 VMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
++.. ++ ...--...+.+.|.++|++..-... ....+=|++. ......+|+.|++..+
T Consensus 347 lti~--------tp----~~Gipg~~v~~~L~e~gii~e~~~d--~~~lll~~~~-~gk~~~lv~~L~~f~r 403 (557)
T COG1982 347 LTIT--------TP----EFGIPGAIVAKYLREHGIIPEETGD--YSNLLLFSPG-IGKWQTLVDRLLEFKR 403 (557)
T ss_pred EEEe--------cC----CCCCcHHHHHHHHHHcCCeeeecCC--ceeeEEeeec-cchHHHHHHHHHHHHH
Confidence 1100 00 0011124567778788865443221 2333444423 2456677888887766
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-07 Score=87.42 Aligned_cols=240 Identities=10% Similarity=0.020 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEec-cCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATI-GTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
+++.+++.|... +.....|++.- .....|.+.| ++++.++|++||+++++|..+.+.......+.-...++
T Consensus 209 ~~~~l~~~l~~~---~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv- 284 (460)
T PRK06916 209 HLEELEELLKEK---HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENV- 284 (460)
T ss_pred HHHHHHHHHHhC---CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCC-
Confidence 356677777532 11244555544 3455566543 88999999999999999999866544333222111233
Q ss_pred CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|++++ .|.+++.+ ..|.+..+++ .. +.+.. .+..... . ....++ ++.+....+..++++.+..
T Consensus 285 ~PDiv~~--gK~l~gG~~Pi~av~~~~e-i~-~~~~~--~~~~~~~-----~--~~~~T~-~gnpl~~aaa~a~l~~l~~ 350 (460)
T PRK06916 285 TPDIMTA--GKGLTGGYLPIAITVTTDE-IY-NAFYG--DYEEQKT-----F--FHGHSY-TGNPLGCAVALANLELYEK 350 (460)
T ss_pred CCCeeee--ehhhhcCccccceeeecHH-HH-HHhhc--cccccCc-----c--ccCCCC-CCCHHHHHHHHHHHHHHHh
Confidence 3788766 68777542 4677766544 32 32211 1100000 0 000011 1112223334444544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CC-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RH-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+...++..++.+++++.|+++.....+.. .. ..++.+.+..... ...+... . ......+...+.
T Consensus 351 ---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~---------~~~~~~~-~-~~~~~~i~~~~~ 416 (460)
T PRK06916 351 ---TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKE---------TKEPFEW-T-ERVGVQVCKRSR 416 (460)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccc---------cccCCCc-h-hhHHHHHHHHHH
Confidence 34567777888888888876532222221 11 2233444432100 0000000 0 122346777788
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
++|.+. .+. ..++|+.++ ...|++||+.+++++.+.+.++
T Consensus 417 ~~Gvl~-~~~----g~~l~~~Pp-l~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 417 ELGMLT-RPL----GNTIVFMPP-LASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred HCCeEE-Eec----CCEEEEeCC-cccCHHHHHHHHHHHHHHHHhh
Confidence 888543 332 247999844 6799999999999999988765
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-07 Score=88.03 Aligned_cols=224 Identities=10% Similarity=-0.008 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCee
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~ 106 (310)
|+++|+++|.+.. .....|++.....+.+...++++|.++|++||+++++|.+|.+......... ...++ ..|.+
T Consensus 173 d~~~l~~~l~~~~---~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~-~~~gv-~PDi~ 247 (431)
T PRK06209 173 DIASLEALFEDHP---GRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQ-KLYGI-VPDLS 247 (431)
T ss_pred CHHHHHHHHHhCC---CCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhh-HHhCC-Cccee
Confidence 7899999996531 1244566655544444445599999999999999999999854422110001 01123 36774
Q ss_pred eeecccccccccceEEEEEeCchhHHhhhcc---C-C-ccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 107 SLNAHKWFFTTLDCCCLWVKDPSDLVNSLST---N-P-EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 107 ~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~---~-~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
+ ..|.+++.+..|.+..+++ .. +.+.. + + .++... + -++-+..+.+..++++.+..+
T Consensus 248 t--~gK~lggG~p~~av~~~~~-i~-~~~~~~~~~~~~~~~~~~-------------T-~~~np~~~aaa~a~l~~i~~~ 309 (431)
T PRK06209 248 C--FGKALGNGFAVSALAGKRE-YM-ELGGLEHTDRERVFLLST-------------T-HGAETHALAAAIATMAIYRDE 309 (431)
T ss_pred e--ehhhhcCCcccEEEEEHHH-HH-hhhcccccCCCCceeecc-------------C-CCCCHHHHHHHHHHHHHHhcc
Confidence 4 4798886444566655433 32 22100 0 0 111000 0 001112334455566655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCCeEE-ecCCCceEE-EEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGS----DKRFEV-VFPRHFAVV-CFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~----~~~~~v-~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
...++..++.+++++.|++ . ++.. +......+. .+...... ..+ .......+.+
T Consensus 310 ---~~~~~~~~~g~~l~~~L~~~~~~~-~~~~~vr~~G~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~ 369 (431)
T PRK06209 310 ---DVIERLHEQGAKLAAGVNEAAAEH-GLQDHVRVSGRPCCLTYSTLDGN--------------GQP--SQAFRTLFLQ 369 (431)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeecceEEEEEecCCcc--------------cCC--cHHHHHHHHH
Confidence 3455556666666666643 3 2221 111111111 11111110 000 0223345667
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.+.+.|.+. . .++++ ...|++||+++++++.+.+..++
T Consensus 370 ~l~~~Gi~~-p--------~l~is---~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 370 ETIRRGVLM-P--------SLVVS---YAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred HHHHCCccc-c--------ccccc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 787888543 2 24444 35789999999999999887764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-07 Score=80.18 Aligned_cols=227 Identities=15% Similarity=0.180 Sum_probs=126.7
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEeecccccccc--cChhhhhhh
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHVDAAYAGSAC--ICPEFRHFI 97 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~~--~~~~~~~~~ 97 (310)
+|++|+++|+-. +. ...||++-++|.+|.+ +++.+|..+|++||++|++|.|+|..+- .+.......
T Consensus 166 KY~vDF~~l~i~--e~------~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w 237 (417)
T COG3977 166 KYHVDFEHLHIG--ES------TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLW 237 (417)
T ss_pred eeccCHHHcccc--cc------cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccC
Confidence 467788876532 33 3389999999999987 4588899999999999999999976531 111111111
Q ss_pred cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHH----
Q 046506 98 DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWF---- 173 (310)
Q Consensus 98 ~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 173 (310)
. .=-..++|..|.+....-||+++ .++..+ +.++....-+ ++..+|-..+++.-+
T Consensus 238 ~---~NiilC~SLSK~GLPG~R~GIiI-ane~vi-qaitnmn~ii----------------sLap~~~G~Aia~~mie~g 296 (417)
T COG3977 238 N---ENIILCMSLSKLGLPGSRCGIII-ANEKVI-QAITNMNGII----------------SLAPGRMGPAIAAEMIESG 296 (417)
T ss_pred C---CCEEEEeehhhcCCCCcceeEEE-ccHHHH-HHHHhcccee----------------eecCCCccHHHHHHHhhcc
Confidence 1 12357899999755445566665 455443 4432211111 111111111221111
Q ss_pred HHHHhCHHHHHHHHHHHHHH-HHHHHHHHcCCCCeEEecCCCceEE-EEEEcCCcchhhhhhhhccccchhHHHHHHHHH
Q 046506 174 VLRNYGVANLRHFLRSHVNM-AKLFERLVGSDKRFEVVFPRHFAVV-CFRVSPSAVMDKLKTKYENSLLSEEERINEFNR 251 (310)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~-a~~l~~~L~~~~~~~v~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
.+..+.++-+...+++..+. ...++..|-+. .+.+ ..|+..|+ ..|+....++ ..
T Consensus 297 dl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-~~~i-HkpEGAIFlWLWf~dLPIt---------------------t~ 353 (417)
T COG3977 297 DLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-RCLI-HKPEGAIFLWLWFKDLPIT---------------------TE 353 (417)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-ceee-ecCCcceeehhhhccCCCC---------------------HH
Confidence 11112223333333322222 22333344332 2233 35555544 5666653221 15
Q ss_pred HHHHHHHhcCcEEEEEeEE---------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 252 ELLESINASGKAYMTHAVL---------GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 252 ~l~~~l~~~g~~~~~~~~~---------~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+++++|.+.|.+.+++... ....++|++.. -+++.|+.-++.|.+-.++.
T Consensus 354 ~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~---~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 354 ELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV---PEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred HHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecC---CCHHHHHHHHHHHHHHHHHH
Confidence 7899999999877765322 12569998844 47888999999888877664
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=92.53 Aligned_cols=280 Identities=19% Similarity=0.214 Sum_probs=177.4
Q ss_pred cceecCCCCCCEEEEecCCCC--CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC-cEEE
Q 046506 2 AAQIVGIDVKNFRAIKTTKSS--SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG-IWVH 78 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~--~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g-~~l~ 78 (310)
+|+.+|+.-..+..++-...+ .++||.-.+++.|+++...+.+|.+++...+.+..|..+.|-+|.++|++|+ .|||
T Consensus 248 aarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~kildi~eahakfWLH 327 (838)
T KOG0630|consen 248 AAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMILKILDICEAHAKFWLH 327 (838)
T ss_pred HHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHHHHHHHHHHhhheeEe
Confidence 467788875555555443321 2489999999999999888889999999999999999999999999999998 9999
Q ss_pred eecccccccccChhhhhhhcC-CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 79 VDAAYAGSACICPEFRHFIDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
.-|- +..++.+.+....... .+..|+++.+..-|++.|.---+++-|+-+. |-.... + ..
T Consensus 328 asGh-aiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg----------~aaSaf-e--sd----- 388 (838)
T KOG0630|consen 328 ASGH-AIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEG----------SAASAF-E--SD----- 388 (838)
T ss_pred eccc-hhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeeccccc----------ccchhc-c--cC-----
Confidence 9873 3333333321111101 1247999999999999996444443222211 111000 0 00
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC------------------------
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR------------------------ 213 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------------------------ 213 (310)
....++..++++|.+++++|...+..+++....+++-+.+.+.+.+++++++..
T Consensus 389 --pi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn~aelaarl~dn~~sPfdvqalfd 466 (838)
T KOG0630|consen 389 --PILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELAARLSDNIFSPFDVQALFD 466 (838)
T ss_pred --hHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHHHHHhhccCCcchHhhhhc
Confidence 012345689999999999999999999999999999999999999999998521
Q ss_pred -CceEEEEEEcCCcchhhhhhhhcc---c-------------cchh-HHHHHHHHHHHHHHHHhcCc-EEEEEeEEC--C
Q 046506 214 -HFAVVCFRVSPSAVMDKLKTKYEN---S-------------LLSE-EERINEFNRELLESINASGK-AYMTHAVLG--G 272 (310)
Q Consensus 214 -~~~~v~~~~~~~~~~~~~~~~~~~---~-------------~~~~-~~~~~~~~~~l~~~l~~~g~-~~~~~~~~~--~ 272 (310)
..++|.+.+.+... .++....+- | ..++ .+..+.+|.++.+.|..+.- +-....-.. .
T Consensus 467 aaaPtVai~~~~~ts-Ik~a~q~hkaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~Llpd~~~f~fdtIE~~gn~ 545 (838)
T KOG0630|consen 467 AAAPTVAIFFDGSTS-IKLAGQGHKAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGLLPDCLNFDFDTIEHGGNH 545 (838)
T ss_pred ccCCeEEEEecCcee-eeccccccHHHHhhccccchhhcchhhhcchHHHHHHHHHHHhcccccCCCCCCceeeecCCcc
Confidence 12445554443211 111111110 0 1112 23456667777766554431 111111112 2
Q ss_pred EeEEEEEccCC-----CCCHHHHHHHHHHHHHHHHH
Q 046506 273 IYAIRFAAGAT-----LTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 273 ~~~iRis~~~~-----~~t~edi~~li~~l~~~~~~ 303 (310)
+.++|+|..-- -...+++++|...|.....-
T Consensus 546 GiafRfCPLEhgaae~pphidhlerFaqkLea~m~I 581 (838)
T KOG0630|consen 546 GIAFRFCPLEHGAAEQPPHIDHLERFAQKLEAHMDI 581 (838)
T ss_pred ceeEEecccccccccCCCchHHHHHHHHHHHHHHHH
Confidence 57899985421 13457888888887766543
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=85.66 Aligned_cols=225 Identities=18% Similarity=0.150 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCccc-ccCChHHHHHHHHHhCcEEEeeccc-ccccccChhhhhhhcCCCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAIT-AVDTLKPLCDVAKQFGIWVHVDAAY-AGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G-~~~pl~~I~~l~~~~g~~l~vD~a~-~~~~~~~~~~~~~~~~~~~~D 104 (310)
|.++|+++ ... . .+.+++..+++ .| .+.++++|.+.+|++|++++|=.=- +.+.+..|. --++|
T Consensus 199 d~~~l~~~-~~~-~----~~gv~vQyP~~-~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPG-------e~GAD 264 (450)
T COG0403 199 DLDDLESA-DDG-D----VFGVLVQYPNT-FGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPG-------EFGAD 264 (450)
T ss_pred hhhhhhhc-ccc-C----eEEEEEecCCC-CCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCcc-------ccCCc
Confidence 56778887 321 1 35677776665 56 6777999999999999987764321 122222221 12699
Q ss_pred eeeeecccccccccc-----eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC----CCcc--------
Q 046506 105 SFSLNAHKWFFTTLD-----CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS----RRFR-------- 167 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g-----~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~----~~~~-------- 167 (310)
+++.+++.+ |.|.| +|+|-++++. .+ ..|+.+-+.+.+..+-+-++. .+|.- ||--
T Consensus 265 IvvG~~Qrf-GvPmgfGGPhag~fA~~~~~--~R---~mPGRlVG~S~D~~G~~A~rL-aLQTREQHIRReKATSNICTn 337 (450)
T COG0403 265 IVVGSAQRF-GVPMGFGGPHAGYFAVKDEF--KR---QMPGRLVGVSVDAAGKRAFRL-ALQTREQHIRREKATSNICTN 337 (450)
T ss_pred eEEecCccc-CCCcCCCCcceeeeeEhHhH--hh---cCCCceeeeeecCCCCchhhh-hHHHHHHHHhhhccchhhhHH
Confidence 999999884 44533 5567666552 22 335555555433222222211 11111 2210
Q ss_pred ----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEecCCCceEEEEEEcCCcchhhhhhhhccccchh
Q 046506 168 ----SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK-RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSE 242 (310)
Q Consensus 168 ----~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
++.....+-.+|.+|+.++.++.++++.+++++|+++. |++++...-++.+.+++..
T Consensus 338 QaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~------------------ 399 (450)
T COG0403 338 QALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPE------------------ 399 (450)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecch------------------
Confidence 11112223357999999999999999999999999763 6888866667777777653
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 243 EERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 243 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..+..+.++....|. -+... ....+=+++.- -+|++||+.|++++...
T Consensus 400 -----~~~~~l~~~~~~~G~-~L~~~---~~~~~~ia~tE-t~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 400 -----EVAEALLAAAIAGGI-NLRRV---DADTVLIALTE-TTTKEDIDALVAAFGGV 447 (450)
T ss_pred -----hHHHHHHHHHHhcCC-ceeee---cCCceEEEeec-ccCHHHHHHHHHHHhhh
Confidence 112334443333342 22111 11255677664 48899999999998764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-07 Score=86.40 Aligned_cols=236 Identities=13% Similarity=0.032 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++.+... ....|++.-.....|.+.| ++++.++|++||+++++|..+....-.... .. ..++ .
T Consensus 206 d~~~l~~~l~~~-----~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~-~~-~~gv-~ 277 (453)
T PRK07046 206 DLAALEAALADG-----DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY-TR-AHGL-E 277 (453)
T ss_pred CHHHHHHHhCCC-----CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch-hH-HhCC-C
Confidence 689999888421 2445666655566677766 899999999999999999998511001111 11 1133 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|.+++ .|.+++.+.+|.+..+++ .. +.+.. ......... ....++. +-+....+..++++.+..
T Consensus 278 PDi~t~--gK~lggG~Pi~av~g~~~-i~-~~~~~~~~~~~~~~~--------~~~~T~~-gnpl~~aa~~a~L~~l~~- 343 (453)
T PRK07046 278 PDFLVV--GKPIAGGVPCAVYGFSAE-LA-ERAQAAKASAPPGHS--------GIGTTLS-ANALAMAAMRATLAEVMT- 343 (453)
T ss_pred ccceee--hhhhcCCCcceeeeehHH-HH-HHHhhccccCCCCCc--------eeCCCCc-ccHHHHHHHHHHHHHHhc-
Confidence 788875 798887666787776544 32 32210 000000000 0000001 111223344445554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC---CCeEE-ecCCCceEEEEEEcCCcchhhhhhhhccccchhHHH--HHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD---KRFEV-VFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEER--INEFNRELLE 255 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~---~~~~v-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 255 (310)
++..++..++.++|+++|.++ -++.. +... ...+.+.+.+.... ...+... -......+..
T Consensus 344 --~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~-G~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 410 (453)
T PRK07046 344 --EAAYAHMLALAARLAAGLRAVIARHGLPWHVTRV-GARVEFQFAPTPPR----------NGAEAAAALDPELEAALHL 410 (453)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CcEEEEEEeCCCCC----------CHHHHhcccCHHHHHHHHH
Confidence 234556666666776666542 12221 1111 22344444321100 0000000 0123456677
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.+.++|.++ .+. ...+|++. -.|++|||.+++++.+.+..+.
T Consensus 411 ~~~~~Gv~~-~~~----~~~~~~~p---~~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 411 YLLNRGVLI-TPF----HNMMLVCP---ATTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred HHHHCCCEE-ecc----cCcEEEeC---CCCHHHHHHHHHHHHHHHHHHh
Confidence 788888644 331 24577773 3789999999999999887653
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-07 Score=84.27 Aligned_cols=208 Identities=12% Similarity=0.022 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC-C---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD-T---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~-p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++.|.+. +..|++.......|... | +++|.++|++||+++++|.++.+. ...........++ .
T Consensus 151 d~~~l~~~i~~~------~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv-~ 222 (364)
T PRK04013 151 DVEAAKEAITKE------TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKV-E 222 (364)
T ss_pred CHHHHHHHhcCC------cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCC-C
Confidence 568888888532 44666666665556544 4 999999999999999999998754 3332221111233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++++ .|.+++....|.+..+.. . . +..... + -++.+..+.+..++++.+.+++
T Consensus 223 PDiv~~--gK~lggG~P~~a~~~~~~-~-~------~~~~~~--------------T-~~gnp~~~aaa~a~l~~i~~~~ 277 (364)
T PRK04013 223 PDIVTM--GKGIGNGVPVSLTLTNFD-V-E------RGKHGS--------------T-FGGNPLACKAVAVTLRILRRER 277 (364)
T ss_pred CCEEEe--cccccCCceeEEEEeccc-c-c------CCCcCC--------------C-CCcCHHHHHHHHHHHHHHHhcc
Confidence 787777 688876555666665433 1 1 000000 0 1122233444555666665544
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
+-+..++ . + ..+.. +.+.=+.. ..-.+.+.+..+ ...+...+.++|.
T Consensus 278 l~~~~~~---~---l-~~l~~-~~v~~vRG-~Gl~~gve~~~~------------------------~~~i~~~~~~~Gl 324 (364)
T PRK04013 278 LVEKAGE---K---F-IEIKG-ERVVTTRG-RGLMIGIVLKKP------------------------VGKYVEELQNRGY 324 (364)
T ss_pred HHHHHHH---H---H-HHhcc-Ccceeeee-CcEEEEEEeCCc------------------------HHHHHHHHHhCCc
Confidence 4333322 1 2 22322 22111111 123344444321 1346677777875
Q ss_pred EEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 263 AYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 263 ~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ +.+. +..++||.++ ...|++|++.+++.|++.+.++.
T Consensus 325 l-~~~~---g~~vlr~~Pp-l~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 325 L-VHTA---GQRVIRLLPP-LIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred E-EeeC---CCCEEEEeCC-cccCHHHHHHHHHHHHHHHHHHh
Confidence 4 3322 3478999955 67999999999999999987654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-07 Score=83.49 Aligned_cols=219 Identities=11% Similarity=0.041 Sum_probs=114.8
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...|++.-.....|.+.| +++|.++|++||++++.|..+.+.........-...++ ..|++ +..|.++...-.
T Consensus 220 iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pi 296 (451)
T PRK06918 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPI 296 (451)
T ss_pred eEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEE--eeehhhcCCCcc
Confidence 445555544444566444 88999999999999999999865543332111001111 26744 568998865667
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|+++.+++ .. +.+.. ..... + .++.+....+..++++.+..+. ..++..++.++++++
T Consensus 297 g~v~~~~~-i~-~~~~~--~~~~~--------------T-~~g~~l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~ 354 (451)
T PRK06918 297 SGVIGRKE-IM-DESAP--GELGG--------------T-YAGSPLGCAAALAVLDIIEKEN---LNDRAIELGKVVMNR 354 (451)
T ss_pred EEEEEcHH-HH-hccCC--CCcCc--------------C-CCcCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
Confidence 88776533 32 22210 00000 0 1111122333334555443333 333444455555555
Q ss_pred HcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 201 VGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 201 L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
|+++ +.+.-+.. ...++.+.+..... +..+. ......+...+.++|.+....... ..++
T Consensus 355 l~~l~~~~~~~~~vrg-~G~~~~~~~~~~~~-----------~~~~~---~~~~~~l~~~~~~~Gvlv~~~~~~--~~~l 417 (451)
T PRK06918 355 FEEMKNKYNCIGDVRG-LGAMCAFELVQDRK-----------TKEPD---KTLTANICKEANKRGLLLLSAGTY--GNVI 417 (451)
T ss_pred HHHHHhhCCCceeecc-ceeEEEEEEccCCC-----------cCCCc---HHHHHHHHHHHHHCCeEEeecCCC--CCEE
Confidence 5433 22211222 34444444421100 00000 223356667777888654332111 3679
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
|++++ ...++++|+.++++|.+.+..+.+
T Consensus 418 rl~p~-l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 418 RVLMP-LVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred EEECC-CccCHHHHHHHHHHHHHHHHHHHH
Confidence 99955 347899999999999999987654
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=84.38 Aligned_cols=241 Identities=12% Similarity=0.039 Sum_probs=148.0
Q ss_pred ccCHHHHHHHHHHHHHc---C----CCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh
Q 046506 25 GLSPDSLMAKINSDVEA---G----LIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI 97 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~---~----~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~ 97 (310)
+.|+++||+.+.+.+.. + ..-..+++....-++|.+.|+.+|.++..+|...+++|.+++.|.+.- ..++..
T Consensus 207 hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~-~GrGvt 285 (467)
T KOG1358|consen 207 HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGK-TGRGVT 285 (467)
T ss_pred CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccc-cCcccc
Confidence 45778898888654411 1 113467888888889999999999999999999999999987665432 111111
Q ss_pred ----cCCCCCCeeeeecccccccccceEEEEEeCchhHH-hhhccCCccccccccccccccCCCCceeccCCCcchHHHH
Q 046506 98 ----DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLV-NSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLW 172 (310)
Q Consensus 98 ----~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (310)
-.+..+|.+++++.-.+. +.|.+++.+...+. +.++. ..|.++. ...++-+-
T Consensus 286 eH~~v~~~~iDiv~~sm~~ala---s~GgFc~G~~~i~~hQrLSg-~~Y~fSA-------------------slPp~la~ 342 (467)
T KOG1358|consen 286 EHFGVPITDIDIVTASMETALA---SGGGFCAGKSFIADHQRLSG-SGYCFSA-------------------SLPPYLAG 342 (467)
T ss_pred ccCCCCccceeeeeeccccccc---ccCceeecceeeEeeeeccc-cceeeec-------------------cCchhhhh
Confidence 123458899988776554 34555555332110 11111 1233222 11122122
Q ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHH
Q 046506 173 FVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNR 251 (310)
Q Consensus 173 ~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
++.+.+. .++-.++.+.....+..+-+.|....++.+.+.+.++++-..+.+.. .+.+.-..+-+
T Consensus 343 aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~--------------~s~e~e~~lL~ 408 (467)
T KOG1358|consen 343 AAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSY--------------GSREKEEKLLE 408 (467)
T ss_pred hHHHHHHHHhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccc--------------cchHHHHHHHH
Confidence 2222221 23334466666677777777887777899998899999988887742 12222233445
Q ss_pred HHHHHHHhcCcEEEEEeEEC------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 252 ELLESINASGKAYMTHAVLG------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 252 ~l~~~l~~~g~~~~~~~~~~------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
++.+....++...+...... -...||+++.. ..++||++++.+.|++....+
T Consensus 409 eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a-~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 409 EIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSA-GMSEEELERAAELIKEVASAV 466 (467)
T ss_pred HHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeC-CCCHHHHHHHHHHHHHHHHhh
Confidence 66666555554443322221 24589999775 789999999999999987654
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-07 Score=80.50 Aligned_cols=226 Identities=11% Similarity=0.015 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhc-CCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID-GVEGA 103 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~ 103 (310)
++|++.|...+.+. +...++.......|++++ +++..++|+++|..++.|.+|.++......+ ++.. ++ -.
T Consensus 199 ~~l~d~i~~~~~~~--vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~w-gfe~h~v-~P 274 (442)
T KOG1404|consen 199 KELEDLILYDGPET--VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMW-GFESHGV-VP 274 (442)
T ss_pred HHHHHHHHhcCCCc--eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccc-cccccCC-Cc
Confidence 45566665544322 445666666666788776 8899999999999999999998877655221 1111 11 25
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|++++ -|.++.....|.+++.++ . .+.+..+..|.+..+ |.+..+....++++.+ ..
T Consensus 275 DIvTm--AKgiGnG~Pl~AVvtt~E-I-a~v~~~~~~~fnTyg----------------gnP~a~avg~aVL~Vi---ke 331 (442)
T KOG1404|consen 275 DIVTM--AKGIGNGFPLGAVVTTPE-I-ADVLNQKSSHFNTYG----------------GNPVACAVGLAVLKVI---KE 331 (442)
T ss_pred cHHHH--HhhccCCCcceeeecCHH-H-HHHHHhccccccccC----------------CCchhHHHHHHHHHHH---HH
Confidence 77765 588887777888877655 2 233322222333221 1122233333444433 45
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCeEEecCCCc-e-EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSHVNMAKLFERLVGSD-KRFEVVFPRHF-A-VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+++.++..+...+|.+.|.++ .+.+++++.+. + ++.+-+..... .+.+++ ......+.+.+.+.
T Consensus 332 e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~-----------~~~pp~--~~~~~~i~~~cke~ 398 (442)
T KOG1404|consen 332 ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKS-----------EPKPPA--TAEGAVIGEQCKEL 398 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccC-----------CCCCcc--hHHHHHHHHHHHHh
Confidence 677788888999999999876 46677765432 2 23333332210 001111 22334566777777
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
|.+. ......+. ++||++. .-.|+||||.+++..
T Consensus 399 Gvlv-g~g~i~G~-vfriaPP-lciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 399 GVLV-GKGGIHGN-VFRIAPP-LCITKEDIDFAVEYF 432 (442)
T ss_pred Ceee-ecccccce-EEEecCC-eeccHHHHHHHHHHH
Confidence 7544 32223333 9999966 569999998888866
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=88.24 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=75.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCC--cccccCChHHHHHHHHHhCcEEEeec
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTT--AITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~--~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
.+.|.+ ++.+-.. + .-...+++.+|.+++. ++.-++.++ .+|. .++++++++||++|++++||.
T Consensus 129 ~~aG~~---l~EvG~t--n--~t~~~d~~~AIne~ta------~llkV~s~~~~f~~~-l~~~~l~~ia~~~~lpvivD~ 194 (395)
T COG1921 129 RLAGAK---LVEVGTT--N--RTHLKDYELAINENTA------LLLKVHSSNYGFTGM-LSEEELVEIAHEKGLPVIVDL 194 (395)
T ss_pred HHcCCE---EEEeccc--C--cCCHHHHHHHhccCCe------eEEEEeecccccccc-ccHHHHHHHHHHcCCCEEEec
Confidence 344554 6666554 2 5778999999999865 444455543 3343 468889999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHH
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLV 132 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~ 132 (310)
+-|.-.-.-+..++.+. .++|.+++|++|.|++|. .|++ +..++++.
T Consensus 195 aSg~~v~~e~~l~~~la--~GaDLV~~SgdKllgGPq-aGii-~GkKelI~ 241 (395)
T COG1921 195 ASGALVDKEPDLREALA--LGADLVSFSGDKLLGGPQ-AGII-VGKKELIE 241 (395)
T ss_pred CCccccccccchhHHHh--cCCCEEEEecchhcCCCc-cceE-echHHHHH
Confidence 87543222222233222 369999999999999996 4544 56666653
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=81.22 Aligned_cols=237 Identities=14% Similarity=0.067 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEE-eccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCA-TIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~-~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
.++||++|.+... .....+++ .......|.+.| ++++.++|++||++|+.|..-.++...+..+.--..++ -
T Consensus 200 a~~le~~i~~~g~--~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi-~ 276 (449)
T COG0161 200 ADELEALILEHGP--ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGI-V 276 (449)
T ss_pred HHHHHHHHHhcCc--ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCC-C
Confidence 5677777766431 12223333 222333566655 89999999999999999998766665554433212223 2
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCC-ccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNP-EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
.|++++ .|.+.+. ...|.+++.++ .. +.+.... .-+.+ ++..+ ...+++.+++..+..
T Consensus 277 PDi~~~--aKGLT~GY~Pl~a~l~~~~-I~-~~~~~~~~~~f~H--------------G~TYs--ghPlacAaAla~L~i 336 (449)
T COG0161 277 PDILCL--AKGLTGGYLPLSAVLTSDR-IY-EAFSDGDAGAFMH--------------GHTYS--GNPLACAAALANLDI 336 (449)
T ss_pred CCeeee--cccccccchhhHhHhhhHH-HH-HHHhcccCCeecc--------------CCccc--cCHHHHHHHHHHHHH
Confidence 687776 4776542 22344455444 33 2222110 00000 00111 234555555554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCC-Cce-EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPR-HFA-VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
-.-+.+.++..++..+|.+.|++ +++-..+... ..+ +..+.+....- .+ .+. -.+....+.+..
T Consensus 337 ~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~---t~------~~f----~~~~~~~~~~~~ 403 (449)
T COG0161 337 LEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKA---TK------TPF----EARVGARVRAAA 403 (449)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccc---cc------cch----hhhHHHHHHHHH
Confidence 33355566666788888888876 4433344332 233 33344443210 00 000 123345677777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.++|. ++.|. ...+=+++. +-.|++||+.+++++.+.+....+
T Consensus 404 ~e~Gl-~iRp~----g~~i~~~PP-liit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 404 LERGL-LIRPL----GDVIYLMPP-LIITREEIDELVDALREALDETLA 446 (449)
T ss_pred HHCCe-EEeec----CCEEEEcCC-ccCCHHHHHHHHHHHHHHHHHHHh
Confidence 78874 55443 235666744 568999999999999999876543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=89.25 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=125.7
Q ss_pred EEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccc-----e
Q 046506 46 LFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-----C 120 (310)
Q Consensus 46 ~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-----~ 120 (310)
..|++. .++..|.+.++++|++++|+.|++++ +++--......... +--++|++ ++.++-|+.|.| .
T Consensus 210 ~~v~vq-~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll~~P-----ge~GADI~-vG~~Q~fGvp~~~GGP~a 281 (954)
T PRK12566 210 FGALLQ-YPDTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVLTPP-----GELGADVV-LGSTQRFGVPMGYGGPHA 281 (954)
T ss_pred EEEEEE-CCCCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCCCCh-----hhcCCcEE-eeCCCcCCCCCCCCCCCe
Confidence 344444 44568999999999999999999855 55432222111110 11269998 555565666544 4
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc----CCC--cc-------h-HHHH--HHHHHhCHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL----SRR--FR-------S-LKLW--FVLRNYGVANLR 184 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~----~~~--~~-------~-~~~~--~~l~~~~~~~~~ 184 (310)
|++.++++ +.+ ..|..+-+...+..+-+-++. ++|. =|| +. + +++. ..+-++|.+|+.
T Consensus 282 g~~a~~~~--~~R---~~PGRivG~s~D~~G~~a~~l-~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~ 355 (954)
T PRK12566 282 AYFACRDD--YKR---AMPGRIIGVSRDARGNTALRM-ALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLK 355 (954)
T ss_pred eeeeehHH--HHh---hCCCCccceeecCCCCeeeeh-hhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHH
Confidence 56666543 223 235555555433323222211 1111 122 10 0 1222 223346999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEE
Q 046506 185 HFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAY 264 (310)
Q Consensus 185 ~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 264 (310)
++.++++.++.++++.|.+ +|+++...+-++.+.+.+... ..++.++..+.|.-.
T Consensus 356 ~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~~~~------------------------~~~~~~~a~~~~~n~ 410 (954)
T PRK12566 356 RIAQRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLEVGGA------------------------QAAIIESAEAARINL 410 (954)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccccCCccceEEEEccCC------------------------HHHHHHHHHHCCCee
Confidence 9999999999999999998 699998776677777776311 134555555555322
Q ss_pred EEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 265 MTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 265 ~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
.. . +...+.+|+-- -+|++|++.+++++.
T Consensus 411 r~---~-~~~~~~~s~de-~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 411 RI---L-GRGRLGVSLDE-TCDEATVARLFDIFL 439 (954)
T ss_pred EE---e-CCCeEEEEeCC-CCCHHHHHHHHHHhc
Confidence 21 1 23468899775 589999999999984
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-05 Score=69.55 Aligned_cols=261 Identities=10% Similarity=0.146 Sum_probs=136.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcC---CCc-EEEEEeccCCcccccCChH---HHHHHHHHhCc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAG---LIP-LFLCATIGTTAITAVDTLK---PLCDVAKQFGI 75 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~---~~~-~~v~~~~~~~~~G~~~pl~---~I~~l~~~~g~ 75 (310)
.+.+|+. ++.|+.|.+ .+++|.|++.+...+... .+| ++=++..+.|++|.-..++ +|.++|++|++
T Consensus 165 ~~a~gv~---~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDf 238 (472)
T KOG0634|consen 165 MEALGVK---IIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDF 238 (472)
T ss_pred ccccCce---EEeccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCE
Confidence 3445654 677777654 499999999998765431 224 3445566679999987765 59999999999
Q ss_pred EEEeecccccccccC---------hhh------hhhhcCCCCCCe----ee-eecccccccccceEEEEEeCchhHHhhh
Q 046506 76 WVHVDAAYAGSACIC---------PEF------RHFIDGVEGADS----FS-LNAHKWFFTTLDCCCLWVKDPSDLVNSL 135 (310)
Q Consensus 76 ~l~vD~a~~~~~~~~---------~~~------~~~~~~~~~~D~----~~-~~~hK~l~~p~g~g~l~v~~~~~~~~~~ 135 (310)
+++-|..+..-.+.. +.+ +.+.......|+ +. -++.|-+....-.|++-.. +..+++.+
T Consensus 239 LIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~-~~~l~ril 317 (472)
T KOG0634|consen 239 LIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGN-SLFLKRIL 317 (472)
T ss_pred EEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecC-HHHHHHHh
Confidence 999999874332221 000 000111111111 11 3456655433344444333 32333332
Q ss_pred ccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHH----HHHHHHHHHHHcC-CCCe-EE
Q 046506 136 STNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSH----VNMAKLFERLVGS-DKRF-EV 209 (310)
Q Consensus 136 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~a~~l~~~L~~-~~~~-~v 209 (310)
. ..+...++...+...=+++.++..|.+|+-+++.+. ......+...|.+ +|+- ..
T Consensus 318 ~------------------~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~ 379 (472)
T KOG0634|consen 318 D------------------LAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCE 379 (472)
T ss_pred h------------------hcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeE
Confidence 1 111111221113344566677777776655544433 3334445555543 4433 33
Q ss_pred ecCCCce-EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--C-----CEeEEEEEcc
Q 046506 210 VFPRHFA-VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL--G-----GIYAIRFAAG 281 (310)
Q Consensus 210 ~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~-----~~~~iRis~~ 281 (310)
+.+|..+ .+.+.+.-... .....+++.-+.+...+.+.|+..+-+... . ....+|+|+.
T Consensus 380 ~~~P~aGmFiwv~i~~~~~-------------~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a 446 (472)
T KOG0634|consen 380 YHPPKAGMFIWVEIPYINF-------------DTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA 446 (472)
T ss_pred EecCCcceEEEEEeccccc-------------ccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEee
Confidence 4455544 44455541100 001112333345555666777644433211 1 2359999966
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 046506 282 ATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 282 ~~~~t~edi~~li~~l~~~~~~ 303 (310)
+...|+++..++.+...+++
T Consensus 447 --~a~~e~l~~g~~rf~~~ike 466 (472)
T KOG0634|consen 447 --FAEPEKLDEGIERFGSVIKE 466 (472)
T ss_pred --cCCHHHHHHHHHHHHHHHHH
Confidence 35677777777777766654
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=68.03 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=133.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH-hCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ-FGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~-~g~~l~vD~ 81 (310)
|.+-+++ |+.+|.++ ++.++.|++.+.+..... +..+.++++.|.+|.+...+.|-++..- -|..++||.
T Consensus 128 A~iNd~e---Vvkvpl~p--dF~lnvdai~evl~~ds~----iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDE 198 (375)
T KOG0633|consen 128 AAINDAE---VVKVPLNP--DFSLNVDAIAEVLELDSK----IKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDE 198 (375)
T ss_pred eecCCce---EEEecCCC--CccccHHHHHHHHhcccc----ceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEee
Confidence 5667777 99999998 479999999999976533 6688999999999998665555555443 279999999
Q ss_pred ccccccccChhhhhhhcCCCCCCee-eeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSF-SLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~-~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+--+........ ++. ++...+ .-+..|-|+-. .-.|+-+. +.....-......+|--+..
T Consensus 199 AYidFsg~~S~~~-lV~--kYpNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~------------- 261 (375)
T KOG0633|consen 199 AYIDFSGVESRMK-LVK--KYPNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVA------------- 261 (375)
T ss_pred eeEeeccccccch-HhH--hCCceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccch-------------
Confidence 9743322111100 011 122222 24555655421 11122121 22222111222333322111
Q ss_pred eccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 160 ITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
+--+++.++. ...++...+.+.+-..++...|.++|.+. ..++...|.+-.++.+.+
T Consensus 262 ----------~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~--------- 322 (375)
T KOG0633|consen 262 ----------GSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGD--------- 322 (375)
T ss_pred ----------hHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCC---------
Confidence 1112233332 23455556666666677888888887764 334556777777777643
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEE--EeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMT--HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+..+..+...+.....+.+. ++-....+.+|+++. |+|+-+.+++.+++.
T Consensus 323 -----------n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG----t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 323 -----------NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG----TPEENTVLMKCLKQF 374 (375)
T ss_pred -----------cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC----CcccchHHHHHHHhh
Confidence 33344454444433333332 122235789999854 456778888888764
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=80.60 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHH--cCCCcEEEEEecc-CCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 29 DSLMAKINSDVE--AGLIPLFLCATIG-TTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 29 ~~Le~~i~~~~~--~~~~~~~v~~~~~-~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
+.+++.|..... .+.....+++.-. ....|.+.| ++++.++|++||++|++|..+.++......+.-...++
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv- 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGC- 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCC-
Confidence 567777754211 1122334444432 344466654 88999999999999999999987765554332212233
Q ss_pred CCCeeeeecccccccc-cceEEEEEeCchhHHhhhccC-C-ccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 102 GADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTN-P-EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~-~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
..|++++ .|.+.+. ...|.++++++ .. +.|... . ..+.... ++ ++.+..+.+..++|+.+
T Consensus 646 ~PDIi~~--gKgLtgG~~Plaa~l~~~~-I~-~~f~~~~~~~~~~hg~------------Ty-~gnpl~cAaala~L~~~ 708 (817)
T PLN02974 646 KPDIACY--AKLLTGGLVPLAATLATEE-VF-EAFRGPSKLDALLHGH------------SY-TAHPMGCAAAAKALQWY 708 (817)
T ss_pred CCCEEee--cccccCCCCccEEEEEcHH-HH-HhhccccccCCcccCC------------CC-CcCHHHHHHHHHHHHHH
Confidence 2788887 4887765 35677776644 33 333210 0 0000000 11 12223344445556655
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHH----cCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHH
Q 046506 179 GVA-NLRHFLRSHVNMAKLFERLV----GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNREL 253 (310)
Q Consensus 179 ~~~-~~~~~~~~~~~~a~~l~~~L----~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (310)
..+ -++...++..++..++.+.| .+.|.+.=+.. ...++.+.+..... .. +. .......+
T Consensus 709 ~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg-~Gl~~~iel~~~~~---------~~-~~----~~~~a~~v 773 (817)
T PLN02974 709 KDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVS-LGTVLALELDAEGS---------GS-GY----SSLYARSV 773 (817)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEe-eeeEEEEEEecCCc---------cc-cc----chHHHHHH
Confidence 443 23344455555555554444 44443321111 23344555543210 00 00 02234566
Q ss_pred HHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 254 LESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 254 ~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.+.+. ++|. ++.+. .++||+... +.+++++++.++++|.+.+
T Consensus 774 ~~~~~~~~Gl-~~r~~----Gnvi~l~pP-~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 774 VRRLRREDGI-YARPL----GNVVYLMCG-PTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHhCCE-EEEec----CCEEEEeCC-CCCCHHHHHHHHHHHHHHh
Confidence 77777 6764 44332 257898744 7899999999999998754
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-05 Score=70.23 Aligned_cols=222 Identities=13% Similarity=0.130 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|.++|+.+|.... ....++.-..-+-|.+.| +++..++|.+||+++++|..|.+-+.......--.+.+ .
T Consensus 195 d~eale~~l~~~~-----vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env-~ 268 (427)
T KOG1402|consen 195 DAEALEVALKSPN-----VAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV-R 268 (427)
T ss_pred CHHHHHHHhcCCC-----eeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc-C
Confidence 5788999887621 233444444556677665 89999999999999999999976554332211001112 3
Q ss_pred CCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|.+.+ .|.|.+ .+..+.++. +++..-. ..|.--.. ++++ ..+++..++..+.--
T Consensus 269 PDivil--gKalSGG~~Pvsavl~-~~~im~~---~~pgeHgs--------------Tygg----NpLg~~vaiAalevi 324 (427)
T KOG1402|consen 269 PDIVIL--GKALSGGVYPVSAVLA-DDDIMLN---IKPGEHGS--------------TYGG----NPLGCAVAIAALEVI 324 (427)
T ss_pred CCeEEE--eccccCCeeeeEEEEe-cHHHHhc---cCCCcccc--------------ccCC----ChHHHHHHHHHHHHH
Confidence 677765 466654 222333433 3322211 11111000 1111 233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CeE-EecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDK-RFE-VVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~-~~~-v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
.-+.+.+++..+-..+++.|.+++ .+. ++... +.-+..+.+.+... .+-+. =+++-.|
T Consensus 325 ~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~-------------~~~~a-----w~~cl~l 386 (427)
T KOG1402|consen 325 VEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT-------------SGQDA-----WDVCLAL 386 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc-------------cchhH-----HHHHHcc
Confidence 446677888889999999998763 220 12111 12223333333210 01111 1233334
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++|. ..-++ ....|||++. .-.+++|++.-+++|.+.+
T Consensus 387 k~~g~-LAkpt---H~~IiRfaPP-L~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 387 KENGL-LAKPT---HGNIIRFAPP-LVISEEDLREGIEAIEKTI 425 (427)
T ss_pred ccccc-ccCCC---CCCeEEecCC-cccCHHHHHHHHHHHHHHh
Confidence 44542 22222 2449999966 5689999999999998754
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=74.70 Aligned_cols=206 Identities=14% Similarity=0.070 Sum_probs=131.9
Q ss_pred EEEEeccCCcccccCC-hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEE
Q 046506 47 FLCATIGTTAITAVDT-LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWV 125 (310)
Q Consensus 47 ~v~~~~~~~~~G~~~p-l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v 125 (310)
.|.+.++.|..|+..| ...+.. . .+++.|.+......+.+- ...|.+.++..|.++ |.|.+++++
T Consensus 147 yv~~~~NeTi~Gv~v~~~p~~~~---~--~~~v~D~SS~ilsr~iDv--------sk~dviyagaQKnlG-paGltvvIv 212 (365)
T COG1932 147 YVHFCWNETISGVEVPELPDIGS---D--GLLVADASSAILSRPIDV--------SKYDVIYAGAQKNLG-PAGLTVVIV 212 (365)
T ss_pred EEEEecCCcccceEccCCCCCCC---C--ceEEEecccHHhcCCCCh--------hHcceEEEehhhccC-ccceEEEEE
Confidence 5888889999998544 222221 2 889999998777766653 248999999999986 778999998
Q ss_pred eCchhHHhhhcc-CCccccccccccccccCCCCceeccCCC--cchHHHH---HHHHHh-CHHHHHHHHHHHHHHHHHHH
Q 046506 126 KDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRR--FRSLKLW---FVLRNY-GVANLRHFLRSHVNMAKLFE 198 (310)
Q Consensus 126 ~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~l~~~-~~~~~~~~~~~~~~~a~~l~ 198 (310)
+++ .+.+.-.. .|.. .+|......++.- +..++++ .+++.+ ..-|++++.++..+.++.|.
T Consensus 213 r~~-~l~r~~~~~~P~i-----------f~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY 280 (365)
T COG1932 213 RPD-LLERAESYTLPSI-----------FDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLY 280 (365)
T ss_pred cHH-HHhcccccCCchH-----------hhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 876 34443222 1211 1221111122211 1122222 233333 33478999999999999999
Q ss_pred HHHcCCCCeEEecC---CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeE
Q 046506 199 RLVGSDKRFEVVFP---RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYA 275 (310)
Q Consensus 199 ~~L~~~~~~~v~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 275 (310)
+.+.+.+-+.-... +....|+|.+.. .++...+.+.+.+.|....-+ .+-.+.
T Consensus 281 ~~id~s~fy~~~v~~~~RS~mnV~f~~~~----------------------~~ld~~fv~eae~~gl~~lkG--hr~vgG 336 (365)
T COG1932 281 DWIDKSDFYRNLVAKANRSRMNVTFTLVD----------------------AELDKGFVAEAEAAGLIYLKG--HRSVGG 336 (365)
T ss_pred HHHHhCCccccccchhhccceeEEEEcCc----------------------HHHHHHHHHHHHHcCCceecc--ccCCCc
Confidence 99988643332211 224467788775 455567777777887666554 223344
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 276 IRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 276 iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+|+|+-+ -...|+|+.|++-++++.+.
T Consensus 337 mRasiyn-A~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 337 LRASIYN-AVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred eeeeeec-CCCHHHHHHHHHHHHHHHHh
Confidence 9999765 57889999999999887654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=71.57 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+.+++.+.+..... ...+++.-.....|.+.| +++|.++|++||+++++|..+.+.........-...++ ..|
T Consensus 164 ~~~~~~~~~~~~~~--iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv-~PD 240 (339)
T PF00202_consen 164 NALEELIAALNADE--IAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV-DPD 240 (339)
T ss_dssp HHHHHHHHHHHGGG--EEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS-SSS
T ss_pred HHHHHHHHhhcCCc--EEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccc-cCc
Confidence 34555555443322 345666555555565433 89999999999999999999977644333221112333 379
Q ss_pred eeeeecccccccccceEEEEEeCc
Q 046506 105 SFSLNAHKWFFTTLDCCCLWVKDP 128 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g~g~l~v~~~ 128 (310)
+++++ |.+++....|.++++++
T Consensus 241 iv~~g--K~l~gG~p~sav~~~~~ 262 (339)
T PF00202_consen 241 IVTFG--KGLGGGLPISAVLGSEE 262 (339)
T ss_dssp EEEEE--GGGGTTSSEEEEEEEHH
T ss_pred ccccc--cchhhhhhcccccccch
Confidence 99986 99888777888887755
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00024 Score=64.17 Aligned_cols=157 Identities=13% Similarity=0.030 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+.+|++.++.++.+ ...|++.-..-..|.+.. +..|..+|+++|++++.|..+.+.........-...++ -
T Consensus 192 d~t~l~k~~~~h~~~---IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~-~ 267 (433)
T KOG1401|consen 192 DSTALEKLFESHKGE---IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGV-T 267 (433)
T ss_pred CHHHHHHHHHhCCCc---eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCc-C
Confidence 589999999887531 335555555544454422 77899999999999999999977555554332212222 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH-H
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV-A 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 181 (310)
.|..++ -|.+++....|.+.++++ .....-+.++ +.+.+ ++. +-+........+++.+.. +
T Consensus 268 PDI~t~--aK~L~gGlPigA~~v~~k-V~~~i~~~~~--l~hg~------------Tf~-gnpLacsa~~~~l~~l~~~e 329 (433)
T KOG1401|consen 268 PDITTV--AKPLGGGLPIGATGVRDK-VAEMISPGDH--LYHGG------------TFS-GNPLACSAGIKVLDELKDPE 329 (433)
T ss_pred Ccceee--hhhccCCceeEEEeehHH-HHhhcCCCCc--cccCc------------ccC-CChhhhhHHHHHHHHHcCHH
Confidence 677766 587877677888888876 2222212222 11111 111 111122233445555544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDK 205 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~ 205 (310)
.+.+.......+.+.+.+.+.+-+
T Consensus 330 ~~k~vs~~~k~L~~~l~e~~~~~~ 353 (433)
T KOG1401|consen 330 TLKNVSKIGKELRKLLDEYLKKTP 353 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Confidence 667777777778888888887654
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.2e-05 Score=65.91 Aligned_cols=220 Identities=13% Similarity=0.090 Sum_probs=124.6
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc----cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC-
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITA----VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV- 100 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~- 100 (310)
=+++++|++|.+..+.......+++.-..++.|. .+=++.+.++|++||+.++||..|.++...+.....-.-++
T Consensus 253 ~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 253 GCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred hHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC
Confidence 4688999999887654433345555544555543 34489999999999999999999987765553221101111
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..+|+++|| |-|. +|.++ .+++.. +..|-.++.+. .|-+...+-+-.+++.+.+
T Consensus 333 ~PpD~vTFS--KK~q----~gGff-h~~~fr----pn~pYrifNTW---------------mGdP~k~lll~~vv~~I~~ 386 (484)
T KOG1405|consen 333 SPPDVVTFS--KKFQ----TGGFF-HDEEFR----PNEPYRIFNTW---------------MGDPSKNLLLEEVVQEIKR 386 (484)
T ss_pred CCccceehh--hhhh----cCccc-cCcccC----CCchHHHhhhh---------------cCChHHHHHHHHHHHHHhH
Confidence 247888886 4443 23333 233221 11122222221 2222333433444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CCCeEEecC--CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGS----DKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELL 254 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (310)
+.+.+++...-++|..+|.+ .|+. ++. -+...+++.++... ....+.
T Consensus 387 ---~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~--~~~~RGrGTF~a~d~ps~~----------------------~Rdk~i 439 (484)
T KOG1405|consen 387 ---EDLLNNVAHVGKALLKGLLELQAKYPGK--INNLRGRGTFIAWDCPSGS----------------------IRDKLI 439 (484)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhCchh--hhcccccceEEEEeCCChH----------------------HHHHHH
Confidence 34455555566667666654 3432 111 14556777777642 223555
Q ss_pred HHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 255 ESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 255 ~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..+..+|. .+.+. +...||+-.+ .-.++.+.+.+++.+.++++.
T Consensus 440 ~~~~~nGv-~~GGC---g~~siRfRPs-Lvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 440 LIARLNGV-NLGGC---GDKSIRFRPS-LVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred HHHHHcCc-eeccc---ccceeeeccc-eeehhhhHHHHHHHHHHHhcc
Confidence 66666664 33322 3567888755 457788999999999887754
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-06 Score=77.14 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCc--ccc--cCChHHHHHHHHHhCcEEEeecccccc
Q 046506 11 KNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTA--ITA--VDTLKPLCDVAKQFGIWVHVDAAYAGS 86 (310)
Q Consensus 11 ~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~--~G~--~~pl~~I~~l~~~~g~~l~vD~a~~~~ 86 (310)
..++.|-+. + +..++++|++|+++|. ++.-.|.||. .|. -.+++++++++|+||+++++|.+-|..
T Consensus 113 a~lvEVGtt--N--~t~~~Dye~AI~e~Ta------~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l 182 (367)
T PF03841_consen 113 ARLVEVGTT--N--RTHLSDYEKAITENTA------ALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLL 182 (367)
T ss_dssp ----------------------------------------------------------HHHHHHHHHT--EEEE-TTHHH
T ss_pred ccccccccc--c--cccccccccccccccc------ccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCC
Confidence 346666664 2 5678999999999875 5556664444 332 357999999999999999999876432
Q ss_pred c----ccChhhhhhhcCC-CCCCeeeeecccccccccceEEEEEeCchhHH
Q 046506 87 A----CICPEFRHFIDGV-EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLV 132 (310)
Q Consensus 87 ~----~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~ 132 (310)
. +..+........+ .++|.++||+.|.+++|. +|+++-+ ++++.
T Consensus 183 ~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gk-k~lI~ 231 (367)
T PF03841_consen 183 VDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGK-KELIE 231 (367)
T ss_dssp HHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEE-HHHHH
T ss_pred cCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeC-HHHHH
Confidence 1 1111111111112 469999999999999996 6776554 54554
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00032 Score=63.00 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=133.3
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEeecc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~vD~a 82 (310)
.|++ |..-|--...+..+|.+.+-..|.+.... .+++....+.|+||.- +..++|.++.++.|..-++|-|
T Consensus 140 aGl~---v~~Y~Yyd~~~~~~df~~mla~L~~a~~~---~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~A 213 (396)
T COG1448 140 AGLE---VETYPYYDAETKGLDFDGMLADLKTAPEG---SVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIA 213 (396)
T ss_pred cCCc---eeeeeccccccccccHHHHHHHHHhCCCC---CEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehh
Confidence 5676 44444322123369999999999876431 2344445556999963 2277899999999999999999
Q ss_pred cccccccChhh--h--hhhcCCCCCCeeeeeccccccc---ccceEEEEEeCchhHHhhhcc-----CCccccccccccc
Q 046506 83 YAGSACICPEF--R--HFIDGVEGADSFSLNAHKWFFT---TLDCCCLWVKDPSDLVNSLST-----NPEYLKNKATESK 150 (310)
Q Consensus 83 ~~~~~~~~~~~--~--~~~~~~~~~D~~~~~~hK~l~~---p~g~g~l~v~~~~~~~~~~~~-----~~~y~~~~~~~~~ 150 (310)
+=++.-..++. . .+.... .-=+++.|..|.|+. -.|+-.++..+.+...+.++- ...|..+..
T Consensus 214 YQGF~~GleeDa~~lR~~a~~~-~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~---- 288 (396)
T COG1448 214 YQGFADGLEEDAYALRLFAEVG-PELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPA---- 288 (396)
T ss_pred hhhhccchHHHHHHHHHHHHhC-CcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCch----
Confidence 74444333221 1 111111 114677999999875 234444444444433332211 111111110
Q ss_pred cccCCCCceeccCCCcchHHHHH------HHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC-C--CeEEecCCCceEEEEE
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWF------VLRNYGVANLRHFLRSHVNMAKLFERLVGSD-K--RFEVVFPRHFAVVCFR 221 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~-~--~~~v~~~~~~~~v~~~ 221 (310)
..+.+.+ .|++.-...++.+++|+.++++.|.+.|++. + .+..+ ..+.+.++|
T Consensus 289 ----------------~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i-~~Q~GMFsy- 350 (396)
T COG1448 289 ----------------HGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFI-ISQRGMFSY- 350 (396)
T ss_pred ----------------hhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchH-hhcCceeec-
Confidence 1111111 2333445667888999999999999999873 2 35444 223333433
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.+-+ .+-..+|.++..+|.... . |+++.. .++..|+.+.++|.++
T Consensus 351 -~Gls------------------------~~QV~rLree~~IY~v~s----G---Ri~vaG--l~~~ni~~va~ai~~v 395 (396)
T COG1448 351 -TGLS------------------------PEQVDRLREEFGIYLVAS----G---RINVAG--LNTSNIDYVAKAIAAV 395 (396)
T ss_pred -CCCC------------------------HHHHHHHHHhccEEEecC----C---eeeecc--CChhhHHHHHHHHHhh
Confidence 3432 233466766666665432 1 999664 6788999999999875
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=67.97 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=97.4
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCC--cccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTT--AITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~--~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+|++ -++.-|+-+.+....|++.+++.|.+... -.++|+.+.++ ..-..+.+++|+.+|..|+++-+|..|+
T Consensus 123 agfe--piiie~i~d~d~l~tdleav~~~iee~g~----dcilci~sttscfapr~pd~leaiaaica~~diphivnnay 196 (432)
T KOG3843|consen 123 AGFE--PIIIENILDGDELITDLEAVEAIIEELGE----DCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAY 196 (432)
T ss_pred cCCC--ceeeeccccchHHHHhHHHHHHHHHHhCC----ceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccc
Confidence 4565 23333333333456789999999987532 22444433222 2233577999999999999999999998
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
|...-..-..-......+.+|.++-|.-|.|+.|.|..++..-+...+......-|+ ..+
T Consensus 197 glqsee~i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak~ypg---ras----------------- 256 (432)
T KOG3843|consen 197 GLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAKMYPG---RAS----------------- 256 (432)
T ss_pred ccchHHHHHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHHhCCC---ccc-----------------
Confidence 754321111000112245789999999999999998877654444333222111111 110
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLV 201 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L 201 (310)
....+.+..++...|..++.+......++--+++..+
T Consensus 257 -a~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki 293 (432)
T KOG3843|consen 257 -ASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKI 293 (432)
T ss_pred -cCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 0123455566666677776666655555544444444
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=63.49 Aligned_cols=240 Identities=14% Similarity=0.143 Sum_probs=122.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHH-HHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDV-AKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l-~~~~g~~l~ 78 (310)
++.+|++ .+.||.+++| .|+|.+|+++.++.. ...+.|+...+|++|...- +++++.+ ....+..++
T Consensus 141 ~E~~Gie---mi~VpM~~dG---PDmD~Ve~LV~~D~s---vKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 141 TEHFGIE---MIPVPMTEDG---PDMDMVEELVAEDPS---VKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp HHHCT-E---EEEEEEETTE---E-HHHHHHHTHTSTT---EEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred HHhhCcE---EEecCCCCCC---CCHHHHHHHHhcCCc---cceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 4678998 9999999864 999999999976533 2347899999999998744 5666666 346789999
Q ss_pred eecccccccccChhhh-------hhhcCCCCCCe--eeeecccccccccceEEEEEeCch--hHHhhhccCCcccccccc
Q 046506 79 VDAAYAGSACICPEFR-------HFIDGVEGADS--FSLNAHKWFFTTLDCCCLWVKDPS--DLVNSLSTNPEYLKNKAT 147 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~-------~~~~~~~~~D~--~~~~~hK~l~~p~g~g~l~v~~~~--~~~~~~~~~~~y~~~~~~ 147 (310)
=|.|++...+..+... ..+...+..|. +..|..|.-+...|.+++...... ++.+.+.. .-+..
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~--~tIgp--- 286 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSV--QTIGP--- 286 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHH--H-S-----
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcC--ceeCc---
Confidence 9999988887322111 11111223443 558889987766666666544331 22222110 00000
Q ss_pred ccccccCCCCceeccCCCcchHHHHHHHHHh-CHH-HHHHHHHHHHHH--------HHHHHHHHc-CCCCeEEecCC-Cc
Q 046506 148 ESKQVVDYKDWQITLSRRFRSLKLWFVLRNY-GVA-NLRHFLRSHVNM--------AKLFERLVG-SDKRFEVVFPR-HF 215 (310)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~~--------a~~l~~~L~-~~~~~~v~~~~-~~ 215 (310)
.-+....-.+++ ..+ |+++.++++.++ .+.|.+.|. .. ++--...| ..
T Consensus 287 -------------------dKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P~GG 346 (425)
T PF12897_consen 287 -------------------DKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKPKGG 346 (425)
T ss_dssp --------------------HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE---SBS
T ss_pred -------------------cHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCCCCc
Confidence 001111112222 234 666666655544 355666676 33 44334444 45
Q ss_pred eEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE-EeEE-----CCEeEEEEEccCCCCCHHH
Q 046506 216 AVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMT-HAVL-----GGIYAIRFAAGATLTEERH 289 (310)
Q Consensus 216 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~-----~~~~~iRis~~~~~~t~ed 289 (310)
..++|...+.. +..+.+...+.|..... +..+ ....-||++.+ +-+.||
T Consensus 347 YFIsld~~~G~-----------------------AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS--~P~lee 401 (425)
T PF12897_consen 347 YFISLDVLDGT-----------------------AKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPS--YPSLEE 401 (425)
T ss_dssp S-EEEEESTT------------------------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--S--SS-HHH
T ss_pred eEEEEecCCCh-----------------------HHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCC--CCCHHH
Confidence 67888888753 13445555566754443 1111 23568999954 578899
Q ss_pred HHHHHHHHHHHH
Q 046506 290 VMVAWTVVQEHL 301 (310)
Q Consensus 290 i~~li~~l~~~~ 301 (310)
++..++.+.-..
T Consensus 402 l~~Am~~~~~cv 413 (425)
T PF12897_consen 402 LETAMDVFATCV 413 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888876444
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.019 Score=51.92 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=59.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEeeccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
.+.--.|+...|.+|.++|++.+++.. .+..|+.+|+..+.|.+|.+ ..|++|..+|+++|+.|+.|..+
T Consensus 185 ~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVY 257 (475)
T KOG0258|consen 185 QVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVY 257 (475)
T ss_pred ccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHH
Confidence 444446776789999999999999987 67888888888888999986 56999999999999999999975
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0098 Score=51.95 Aligned_cols=241 Identities=9% Similarity=0.025 Sum_probs=132.5
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.-.+.+++.+.+.-..+......+..+-.+-.|.+.| ++++++-.|.+|-.++.|..|.++......+-.+-..-.
T Consensus 191 ~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~f 270 (452)
T KOG1403|consen 191 LYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNF 270 (452)
T ss_pred hhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhcc
Confidence 4457788888776554433323333444455676655 788999999999999999999777655543211111101
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
-.|+++++ |-++-....+.+...++ +-++|.. .-.|....+ |-+-..+...+.++..
T Consensus 271 iPDIVtmg--KpmGNGhPVa~Vattke--IA~Af~atgv~YFNTyG----------------GnPVsCAv~laVm~v~-- 328 (452)
T KOG1403|consen 271 IPDIVTMG--KPMGNGHPVAAVATTKE--IAQAFHATGVEYFNTYG----------------GNPVSCAVGLAVMRVC-- 328 (452)
T ss_pred ccchheec--ccCCCCCeeeEEeccHH--HHHHhccccceehhccC----------------CCchhHHHHHHHHHHH--
Confidence 25777653 33333222344443333 3455533 345554432 1122233333444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCeEEecCCCc-eE-EEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSD-KRFEVVFPRHF-AV-VCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
.-+++.++....-.+|...|+++ ...++++..+. ++ +.+.+.... .+..+. .+.+.++..+|
T Consensus 329 -e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~-----------~tRtP~---tk~A~~~v~rl 393 (452)
T KOG1403|consen 329 -EDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDR-----------KTRTPD---TKEAHWVVNRL 393 (452)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeeccc-----------ccCCCc---HHHHHHHHHHH
Confidence 33455666666667777666654 24455654332 22 222222110 001111 34557778888
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.+...+.++.. -.+.+.+.|-+. -..++++.+.++..|.+++..|.
T Consensus 394 ke~y~VLlsaD-GPh~NilKiKPP-mCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 394 KELYRVLLSAD-GPHRNILKIKPP-MCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred HHhhhEEEecC-CCCCceeecCCC-cccChhhHHHHHHHHHHHHHHHH
Confidence 88765555522 124677888755 35788999999999999887553
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=59.61 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=69.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccC--Cc--ccccCChHHHHHHHHHh--CcEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGT--TA--ITAVDTLKPLCDVAKQF--GIWV 77 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~--~~--~G~~~pl~~I~~l~~~~--g~~l 77 (310)
.-+|+. ...||..+++ .+|.+.++++|++.+ .+|.+.=.. +. .=++++|+++.+.+|+. ++.+
T Consensus 125 ~e~Gi~---Y~~v~L~~dg--~~D~~~i~~~~~~~t------k~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~ii 193 (403)
T PF06838_consen 125 KEFGIK---YREVPLTEDG--TIDWEAIKKALKPNT------KMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVII 193 (403)
T ss_dssp GGGT-E---EEE--B-TTS--SB-HHHHHHHHHTTE------EEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEE
T ss_pred HHhCce---eEEEeecCCC--CcCHHHHHHhhccCc------eEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEE
Confidence 345676 8899999765 999999999999653 366664332 11 12256677777788876 6899
Q ss_pred EeecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhh
Q 046506 78 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNS 134 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~ 134 (310)
+||.++|-+.-... + ..+ ++|.+..|.=|..++. ..+|..++.+.++++++
T Consensus 194 fVDNCYGEFvE~~E---P--~~v-GADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~ 245 (403)
T PF06838_consen 194 FVDNCYGEFVETQE---P--TEV-GADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA 245 (403)
T ss_dssp EEE-TTTTTTSSS----G--GGG-T-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred EEeCCcceeccccC---c--ccc-chhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence 99999975543221 1 112 6999999999998862 34566667777665544
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.038 Score=48.01 Aligned_cols=167 Identities=16% Similarity=0.090 Sum_probs=95.0
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhC-
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYG- 179 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~- 179 (310)
..+.+..++.|..+ |.|.-++++|+. .+.+.....|.-+.-.-. + .+.++-.+-+ +.....-..++.+-
T Consensus 195 k~gvi~aGAQKN~G-~aG~Tvvivr~d-llg~~~~~tP~v~dyk~~------~-~NnSlyNTpP~f~iy~~~Lv~~~il~ 265 (370)
T KOG2790|consen 195 KFGVIFAGAQKNVG-PAGVTVVIVRKD-LLGNALDITPSVLDYKIM------D-KNNSLYNTPPCFGIYVMGLVFEWILE 265 (370)
T ss_pred hcceEEeccccccC-ccccEEEEEehh-hhcccccCCccccceeee------c-cccccccCCCeeeeeehhhHHHHHHh
Confidence 46789999999976 778888888876 343333222211110000 0 0000000011 22222223344432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CC---CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PR---HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 180 ~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
.-|+.++.+...+.++.+.+.|.+..||-.+. +| .-..|+|++.+. ++..++.+
T Consensus 266 ~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d----------------------~Le~eFLk 323 (370)
T KOG2790|consen 266 KGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKD----------------------ELEAEFLK 323 (370)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecch----------------------HHHHHHHH
Confidence 34678888888899999999999877886653 12 234578998863 22233333
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.-.+++ +++.--++..+.||-|+-+ ..+-|++..|++-+++..+
T Consensus 324 eA~~~~--mv~LKGhRSVGGiRASlYN-Aisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 324 EAAKEH--MVQLKGHRSVGGIRASLYN-AISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred HHHHhh--hhccccccccccchhhhhc-cccHHHHHHHHHHHHHHHH
Confidence 333332 1111112345678999776 4888999999988888764
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.14 Score=49.39 Aligned_cols=212 Identities=16% Similarity=0.090 Sum_probs=117.6
Q ss_pred EEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEe
Q 046506 47 FLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVK 126 (310)
Q Consensus 47 ~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~ 126 (310)
.+.+..+.+ .|.+.+..++++.+++.|..+++-.-..+-.+.-+ .+-.++|+...|... |+.|.|=|.=...
T Consensus 250 gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrp------PgefGaDIavGSsQR-FGVPlGYGGPHAa 321 (1001)
T KOG2040|consen 250 GVLVQYPDT-EGSVLDFDELVELAHANGSLVVMATDLLALTILRP------PGEFGADIAVGSSQR-FGVPLGYGGPHAA 321 (1001)
T ss_pred EEEEEcCCC-CCcccCHHHHHHHhhccCceEEEeehhhHHHccCC------hhhcCceeeeccccc-cCccccCCCchHH
Confidence 455554444 69999999999999999988665432211111111 111269999988887 5788777642111
Q ss_pred CchhHHhhhccCCccccccccccccccCCCCceec----cCCC--c-----chHHHHH-----HHHHhCHHHHHHHHHHH
Q 046506 127 DPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT----LSRR--F-----RSLKLWF-----VLRNYGVANLRHFLRSH 190 (310)
Q Consensus 127 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~----~~~~--~-----~~~~~~~-----~l~~~~~~~~~~~~~~~ 190 (310)
--..........|+.+-+-..+..+-.-++ ..+| --|| + .+-++.+ ..-+.|.+|++++.++.
T Consensus 322 FfAv~~~l~R~mPGRiiGvtkD~~gk~a~R-LALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrv 400 (1001)
T KOG2040|consen 322 FFAVSESLVRMMPGRIIGVTKDALGKEAYR-LALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRV 400 (1001)
T ss_pred HHHHHHHHHhhCCCceEeeeecccccHHHH-HHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 000001112233444433322111100000 0001 0122 1 0111111 11135899999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC-cEEEEEeE
Q 046506 191 VNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG-KAYMTHAV 269 (310)
Q Consensus 191 ~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~ 269 (310)
+..+-.|..+|++. |-++.+.+-+..+.+++.... +++.++-.++. ++...
T Consensus 401 h~~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~s~------------------------~~~l~rA~~~~iNlr~~--- 452 (1001)
T KOG2040|consen 401 HNLTLILAEGLKNA-GHELQHKPFFDTLKIRCGCSA------------------------EEVLDRAAKRQINLRLV--- 452 (1001)
T ss_pred HHHHHHHHHHHhhc-chhhccccccceEEEEecCcH------------------------HHHHHHHHhhcCceEEe---
Confidence 99999999999975 778877777777777776521 23333333332 22111
Q ss_pred ECCEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 270 LGGIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 270 ~~~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
..+.|-+|+-- -++++|+|.++..+.
T Consensus 453 --ed~tigvslDE-Tv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 453 --EDGTIGVSLDE-TVTEKDVDDLLWVFN 478 (1001)
T ss_pred --ecCceEEeecc-cccHHHHHHHHHHHc
Confidence 23456677554 588999999998886
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.036 Score=48.54 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=70.3
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEecc--CCc--ccccCChHHHHHHHHHh--CcEEE
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIG--TTA--ITAVDTLKPLCDVAKQF--GIWVH 78 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~--~~~--~G~~~pl~~I~~l~~~~--g~~l~ 78 (310)
-+|++ ...||...++ ++|.+.++..|+++++ +|.+.-. ... .=.+.+|+++..+.++- |+.++
T Consensus 137 dfgi~---Y~~v~Lt~~g--kiD~~~v~~~i~~~tk------li~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivF 205 (416)
T COG4100 137 DFGIK---YKAVPLTADG--KIDIQAVKTAISDRTK------LIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVF 205 (416)
T ss_pred HhCcc---eeecccccCC--cccHHHHHHhcCccce------EEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEE
Confidence 45776 7889998755 9999999999998764 4544322 111 22356677777777775 68999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhH
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDL 131 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~ 131 (310)
||.++|-+.- ...+ ..+ ++|.+..|.=|.-++. .-+|..+....++.
T Consensus 206 VDNCYGEFvE---~~EP--t~v-GaDliAGSLIKNpGGgiaktGGYiaGk~~~v 253 (416)
T COG4100 206 VDNCYGEFVE---EKEP--THV-GADLIAGSLIKNPGGGIAKTGGYIAGKAELV 253 (416)
T ss_pred Eeccchhhhh---ccCc--ccc-chhhhccceeeCCCCceeeccceeechHHHH
Confidence 9999975432 1111 112 5999999999975542 22333344444443
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.6 Score=38.76 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=118.5
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccCC----hHHHHHHHHHhCcEEEeecccccccccC---hhh--
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACIC---PEF-- 93 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~---~~~-- 93 (310)
-.+|++-+.+.|...+.. .++++-.| .|++| +|| ...|++..++.+...+.|-|+-+++-.- +.+
T Consensus 161 k~~d~e~~Lsdl~~APe~----si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAi 235 (410)
T KOG1412|consen 161 KCVDLEGFLSDLESAPEG----SIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAI 235 (410)
T ss_pred ceecHHHHHHHHhhCCCC----cEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHH
Confidence 368989888888776432 13333333 57777 566 5579999999999999999864433211 111
Q ss_pred hhhhcCCCCC-Ceeeeeccccccc---ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchH
Q 046506 94 RHFIDGVEGA-DSFSLNAHKWFFT---TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSL 169 (310)
Q Consensus 94 ~~~~~~~~~~-D~~~~~~hK~l~~---p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (310)
+.+++. +. =+++-|+-|.|+- -.|+=-+.++++..+....+-..--+... ++- +.+.
T Consensus 236 R~fV~~--g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~------------~SN-----PPAy 296 (410)
T KOG1412|consen 236 RYFVEQ--GFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSN------------WSN-----PPAY 296 (410)
T ss_pred HHHHhc--CCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhc------------cCC-----Ccch
Confidence 111221 23 2456788888774 24554556676654322111000000000 000 0111
Q ss_pred HHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHcCC--CCe-EEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 170 KLWFVLRNY--------GVANLRHFLRSHVNMAKLFERLVGSD--KRF-EVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 170 ~~~~~l~~~--------~~~~~~~~~~~~~~~a~~l~~~L~~~--~~~-~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
++-.+.+.+ -...+..+..|+.++...|++.|.++ ||- .-+ ..+.+. |.+.+.+
T Consensus 297 GArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI-~~QiGM--FSyTGLt------------ 361 (410)
T KOG1412|consen 297 GARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHI-TQQIGM--FSYTGLT------------ 361 (410)
T ss_pred hhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-Hhhccc--eeecCCC------------
Confidence 111111111 12345666778888889999998875 221 000 013333 4444432
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..-.+.|.+++.+|+... + |++++. .+...+|++-.+|.+....+
T Consensus 362 ------------p~qV~~li~~h~vyLl~~----G---RInisG--LN~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 362 ------------PAQVDHLIENHKVYLLSD----G---RINISG--LNMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred ------------HHHHHHHHHhceEEEecC----C---cEeeec--cccccHHHHHHHHHHHHHhh
Confidence 234566777777776543 2 788664 34457888888888877654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.49 Score=42.47 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=121.8
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD 80 (310)
.+|+..+..++-... ...+|++.+-+-|.+... + .++++.-...|.+|. || .++|.++.++.+..-+.|
T Consensus 165 ~ag~~~~~yrYyd~~---t~gld~~g~ledl~~~p~-g--s~ilLhaCaHNPTGv-DPt~eqw~ki~~~~~~k~~~pffD 237 (427)
T KOG1411|consen 165 DAGLPVKFYRYYDPK---TRGLDFKGMLEDLGEAPE-G--SIILLHACAHNPTGV-DPTKEQWEKISDLIKEKNLLPFFD 237 (427)
T ss_pred ccCcceeeeeecccc---ccccchHHHHHHHhcCCC-C--cEEEeehhhcCCCCC-CccHHHHHHHHHHhhhccccchhh
Confidence 356664444444443 346888888887766543 2 234444444577774 44 778999999999999999
Q ss_pred cccccccccC---hhh--hhhhcCCCCCCeeeeeccccccc---ccceEEEEEeCchhHHhh---h--ccCCcccccccc
Q 046506 81 AAYAGSACIC---PEF--RHFIDGVEGADSFSLNAHKWFFT---TLDCCCLWVKDPSDLVNS---L--STNPEYLKNKAT 147 (310)
Q Consensus 81 ~a~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~hK~l~~---p~g~g~l~v~~~~~~~~~---~--~~~~~y~~~~~~ 147 (310)
.|+-+++... +.+ +.+... +.-=.++-|.-|.++- -.|+=-+++.+.+.-.+. + ...|-|..+.
T Consensus 238 mAYQGfaSG~~d~DA~avR~F~~~-g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP-- 314 (427)
T KOG1411|consen 238 MAYQGFASGDLDKDAQAVRLFVED-GHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPP-- 314 (427)
T ss_pred hhhcccccCCchhhHHHHHHHHHc-CCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCC--
Confidence 9875543221 111 111111 1112345666676653 223323344444211111 0 1112222111
Q ss_pred ccccccCCCCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec---CCCceEEEEEEc
Q 046506 148 ESKQVVDYKDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF---PRHFAVVCFRVS 223 (310)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~---~~~~~~v~~~~~ 223 (310)
.-++|-. ..+. -..+..--...++.+.+|+....+.+.+.|... +-..-+ ..+.+.+|| .
T Consensus 315 ------------~hGArIv~~Il~-d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~-gs~~~W~hI~~QIGMF~f--T 378 (427)
T KOG1411|consen 315 ------------LHGARIVATILS-DPDLKNQWLGEVKGMADRIISMRQQLFDALEKE-GSPGNWSHITKQIGMFCF--T 378 (427)
T ss_pred ------------ccchhhhhhccC-ChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcC-CCCccHHHHHHhhheeee--c
Confidence 0111110 0000 001111122456778899999999999999864 322211 123344444 3
Q ss_pred CCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 224 PSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+.+ .+-.++|..+..+|+... . |+|+.+ .+...|++|-++|.++.+
T Consensus 379 gl~------------------------peQv~~l~ke~~iYmT~d----G---RiS~aG--~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 379 GLN------------------------PEQVDWLTKEYHIYLTKD----G---RISMAG--LSSSNVPYLADAIHAVTK 424 (427)
T ss_pred CCC------------------------HHHHHHHHhhheeeeccC----c---eEeecc--ccccCCcccchhhHhHhc
Confidence 321 234456666655555421 2 889664 555678888888877643
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=82.33 E-value=20 Score=32.62 Aligned_cols=202 Identities=14% Similarity=0.093 Sum_probs=98.0
Q ss_pred cEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccc-cccceEEE
Q 046506 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-TTLDCCCL 123 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l 123 (310)
+.+=++++++|+.|.+-. .+++.-+..++-|=|+-..++.- ... -.+-|++-|+..|.=| +..-.|..
T Consensus 138 ~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTp-----I~~-~aD~DiMLFT~SK~TGHAGSR~GWA 206 (363)
T PF04864_consen 138 PYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTP-----ITA-PADHDIMLFTLSKLTGHAGSRFGWA 206 (363)
T ss_dssp GEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS--------S--B--SEEEEEHHHHCS-GGG-EEEE
T ss_pred CeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccc-----cCC-CCCCceEEEEEecccCcccccccee
Confidence 667788899999997531 13455667789998876655321 111 1246889999999533 33456889
Q ss_pred EEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cchHHHHHHHHH-hCHH-----HHHHHHHHHHHHHH
Q 046506 124 WVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FRSLKLWFVLRN-YGVA-----NLRHFLRSHVNMAK 195 (310)
Q Consensus 124 ~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~~-----~~~~~~~~~~~~a~ 195 (310)
+|++++..++.. .|+.... +.-+|- .+++.+..++.. ++.. -.+--.+...+.=+
T Consensus 207 lVKD~~Va~kM~----~y~~lnT-------------iGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~ 269 (363)
T PF04864_consen 207 LVKDEEVAKKMT----KYMELNT-------------IGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWE 269 (363)
T ss_dssp EES-HHHHHHHH----HHHHHHC-------------SS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHH----HHHHHhc-------------ccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHH
Confidence 999997554332 2322111 011111 244444443322 2211 11111222333345
Q ss_pred HHHHHHcCCCCeEEec-C------------CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 196 LFERLVGSDKRFEVVF-P------------RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 196 ~l~~~L~~~~~~~v~~-~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
.|++.+.....|.+-. + |......+.+.... + .+....|.+.++
T Consensus 270 ~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee---------------d--------~DC~~~l~~~~I 326 (363)
T PF04864_consen 270 KLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE---------------D--------EDCYAVLREAKI 326 (363)
T ss_dssp HHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG---------------G--------SSHHHHHHCTTE
T ss_pred HHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc---------------c--------ccHHHHHHhCCc
Confidence 5777777666666532 1 12334445555321 0 244555555554
Q ss_pred EEEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 263 AYMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 263 ~~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+--++...+ +...+|+|+. -++++.|.|++.|+.+
T Consensus 327 ~tr~G~~fga~~ryVRlSml---~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 327 ITRSGVLFGADSRYVRLSML---KRDDDFDQLLERLSKL 362 (363)
T ss_dssp EEEEGGGGTS-TTEEEEESS---S-HHHHHHHHHHHHCC
T ss_pred ccCCCCccCCCCCeEEEecc---CCHHHHHHHHHHHHhh
Confidence 444333222 3568999954 5688999999988754
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 310 | ||||
| 3rbf_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 6e-60 | ||
| 3rch_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 2e-59 | ||
| 1js3_A | 486 | Crystal Structure Of Dopa Decarboxylase In Complex | 4e-58 | ||
| 3k40_A | 475 | Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl | 7e-57 | ||
| 4e1o_A | 481 | Human Histidine Decarboxylase Complex With Histidin | 6e-55 | ||
| 2jis_A | 515 | Human Cysteine Sulfinic Acid Decarboxylase (Csad) I | 2e-27 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 9e-21 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 2e-20 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 4e-20 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 2e-18 | ||
| 3f9t_A | 397 | Crystal Structure Of L-tyrosine Decarboxylase Mfna | 4e-04 |
| >pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480 | Back alignment and structure |
|
| >pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480 | Back alignment and structure |
|
| >pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486 | Back alignment and structure |
|
| >pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475 | Back alignment and structure |
|
| >pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 | Back alignment and structure |
|
| >pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
| >pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-132
Identities = 118/310 (38%), Positives = 166/310 (53%), Gaps = 26/310 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +AI + + + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGV---KLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE V D RFEV +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ N LLE IN++ K ++ L G + +RFA + E HV +AW ++
Sbjct: 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGL 470
Query: 301 LEALLSASKP 310
LL+A +
Sbjct: 471 AAELLAAEEG 480
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 379 bits (974), Expect = e-130
Identities = 108/306 (35%), Positives = 160/306 (52%), Gaps = 28/306 (9%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I + + + ++ L ++L I D + GL+P+F+CAT+GTT + A
Sbjct: 203 KAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAF 257
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L + + G+W+H+DAAYAG+A +CPEFR F+ G+E ADSF+ N KW DC
Sbjct: 258 DCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC 317
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
WVKD L + S NP YL++ S D+ WQI LSRRFRS+KLWFV+R++GV
Sbjct: 318 TGFWVKDKYKLQQTFSVNPIYLRHA--NSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGV 375
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NL+ +R MAK FE LV +D FE+ RH +V FR+
Sbjct: 376 KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP--------------- 420
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
N +L+ I +G+ ++ A + IRF + T ++ W ++++
Sbjct: 421 ------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDA 474
Query: 301 LEALLS 306
+LS
Sbjct: 475 ATLILS 480
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 375 bits (965), Expect = e-129
Identities = 114/305 (37%), Positives = 162/305 (53%), Gaps = 29/305 (9%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A + G+ +++ + S ++ + +L I DV GLIP + T+GTT A
Sbjct: 197 RAGLLGGVKLRSVQ------SENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAF 250
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L V + +W+HVDAAYAGSA ICPE+RH + G+E ADSF+ N HKW DC
Sbjct: 251 DYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC 310
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+W+KDPS +VN+ + +P YLK+ S DY+ WQI L RRFR+LKLWFVLR YGV
Sbjct: 311 SAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGRRFRALKLWFVLRLYGV 368
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NL+ +R H N AK F L +D RFE+ + +VCFR+ S
Sbjct: 369 ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS--------------- 413
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
NE N LL+ IN G ++ A + +Y +R A + T+ + +W V
Sbjct: 414 ------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAA 467
Query: 301 LEALL 305
+ +
Sbjct: 468 ADEME 472
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 370 bits (953), Expect = e-127
Identities = 64/308 (20%), Positives = 118/308 (38%), Gaps = 11/308 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA +G N IK + P AKI + G +P ++ AT GTT A
Sbjct: 204 KAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF 261
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D ++ + D+ +++ +W+HVDAA+ G + + RH ++G+E A+S + N HK L C
Sbjct: 262 DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC 321
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+ VK+ L YL + D D I R K W + + G
Sbjct: 322 SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 381
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENS 238
+ + + +A+ + + + FE+VF VCF P ++ +
Sbjct: 382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP---- 437
Query: 239 LLSEEERINEFNRELLESINASGKAYMTHA-VLGGIYAIRFAAGATLTEERHVMVAWTVV 297
E++++ ++ + SG + + R + + +
Sbjct: 438 --QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEI 495
Query: 298 QEHLEALL 305
+ + L
Sbjct: 496 ERLGQDLH 503
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-125
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 10/306 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A +G+ + R +K + P+ L +I G +P + AT GTT + A
Sbjct: 218 KGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ + DV ++ G+W+HVDAA+ GS + RH +DG++ ADS + N HK L C
Sbjct: 276 DPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQC 335
Query: 121 CCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179
L ++D S+ L + YL + +D D + RR LKLW + + G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239
L + +A+ + + FE+V F VCF P ++ K ++ +
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYH-- 453
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGG-IYAIRFAAGATLTEERHVMVAWTVVQ 298
ER+++ L E + G + + G R + + ++
Sbjct: 454 ----ERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELE 509
Query: 299 EHLEAL 304
+ L
Sbjct: 510 RLGQDL 515
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 355 bits (914), Expect = e-121
Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 24/305 (7%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K+A +G+ K + + + L I GLIP + T GTT A+
Sbjct: 217 KSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAI 274
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + D+A + +W+HVD AY G A I + + GVE A S S++ HK F+ T+ C
Sbjct: 275 DDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISC 333
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
L V D S+ L + +YL + E + + D I ++RF +LK++ ++N G
Sbjct: 334 GALLVNDKSNF-KFLLHHADYLNREHDE---LPNLVDKSIATTKRFDALKVFMTMQNVGP 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L + ++ ++ +FE++ + V FR +
Sbjct: 390 KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATH---------------- 433
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
E ++E N+ L G A + ++ G A++F + +
Sbjct: 434 -ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINML 492
Query: 301 LEALL 305
L+
Sbjct: 493 AVELV 497
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-28
Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 34/241 (14%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA VG++++ + + + + I ++E G P + +T+
Sbjct: 191 KAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNS 247
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFTTL 118
D + + + + + I ++ AY A + + D+ ++ K T +
Sbjct: 248 DDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPI 304
Query: 119 DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178
++ D + + S + L +
Sbjct: 305 GGGLVYSTDAEFIKEI--------------------SLSYPGRASAT-PVVNTLVSLLSM 343
Query: 179 GVANLRHFLRSHVNMAKLFERLVGS-----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233
G N +++ N KL + L+ +F V + + P + KL
Sbjct: 344 GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYN 403
Query: 234 K 234
Sbjct: 404 L 404
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 34/247 (13%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA G+ + R ++ ++ Y + + IN + + L +
Sbjct: 173 KAAYYFGMKL---RHVELDPTT-YQVDLGKVKKFINKN------TVLLVGSAPNFPHGIA 222
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAG------SACICPEFRHFIDGVEGADSFSLNAHKWF 114
D ++ L +A+++ + +HVD+ V G S S + HK+
Sbjct: 223 DDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG 282
Query: 115 FTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL--SRR-FRSLKL 171
F + ++ ++ NP + TL SR +
Sbjct: 283 FAPKGSSVIMYRNSDLRMHQYYVNPAWTG-----------GLYGSPTLAGSRPGAIVVGC 331
Query: 172 WFVLRNYGVANLRHFLRSHVNMAK-LFERLVGSDKRFEVVFPRHFAVVCFR---VSPSAV 227
W + N G + V A + + + +++ ++V+ F ++ +
Sbjct: 332 WATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHEL 391
Query: 228 MDKLKTK 234
D+L K
Sbjct: 392 SDRLSKK 398
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 1e-23
Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 30/243 (12%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQ GI + Y ++ I + + + + V
Sbjct: 207 KAAQYFGIKL---VRTPLDAD--YRADVAAMREAITPN------TVVVAGSAPGYPHGVV 255
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----FRHFIDGVEGADSFSLNAHKWFF 115
D + + +A + GI HVDA G E F +EG S S + HK+ +
Sbjct: 256 DPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY 315
Query: 116 TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFV 174
+ + P L ++ Y SR S W
Sbjct: 316 GAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGALSATAWAA 366
Query: 175 LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR---VSPSAVMDKL 231
+ + G R + A + V + +++ V+ ++ VM+++
Sbjct: 367 MLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD-PLWVIAVASDELNIYQVMEEM 425
Query: 232 KTK 234
+
Sbjct: 426 AGR 428
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 4e-20
Identities = 40/251 (15%), Positives = 87/251 (34%), Gaps = 38/251 (15%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A+ +++ + +K ++ Y + P + ++ + + + A +G+T
Sbjct: 169 KFARYFEVEL---KEVKLSEGY-YVMDPQQAVDMVDEN------TICVAAILGSTLNGEF 218
Query: 61 DTLKPLCDVAKQFG------IWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKW 113
+ +K L D+ + +HVDAA G D + S +++ HK+
Sbjct: 219 EDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKY 278
Query: 114 FFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL--SRR-FRSLK 170
+ ++ DL L + YL TL S+ + +
Sbjct: 279 GLVYAGIGWVIWRNKEDLPEELIFHINYLG-----------ADQPTFTLNFSKGSSQVIA 327
Query: 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPS---- 225
++ L G R+ + + + + +RF +V +V F + S
Sbjct: 328 QYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHT 387
Query: 226 --AVMDKLKTK 234
+ D L+
Sbjct: 388 EFEISDMLRRY 398
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-18
Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 35/245 (14%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K +++ ++ + Y + + + + GTT + +
Sbjct: 138 KGREMMDLEY---IYAPIKED--YTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTI 187
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHFIDGVE-------GADSFSLNAH 111
D ++ L +AK+ I++HVDAA+ G + P + ++ GV G DS +++ H
Sbjct: 188 DNIEELSKIAKENNIYIHVDAAFGGL--VIPFLDDKYKKKGVNYKFDFSLGVDSITIDPH 245
Query: 112 KWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR-RFRSLK 170
K + + KD L + YL + I +R F
Sbjct: 246 KMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQAT----------ILGTRVGFGGAC 294
Query: 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS-PSAVMD 229
+ VLR G R + + + + + F+ V +V V
Sbjct: 295 TYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDYKEVCK 353
Query: 230 KLKTK 234
KL+ +
Sbjct: 354 KLRDR 358
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 2e-15
Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 43/256 (16%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A+ +++ R I + P ++ + + + + T G T
Sbjct: 154 KFARYWDVEL---REIPMRPGQ-LFMDPKRMIEACDEN------TIGVVPTFGVTYTGNY 203
Query: 61 DTLKPLCDVAKQF------GIWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKW 113
+ +PL D +F I +H+DAA G D + S S + HK+
Sbjct: 204 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKF 263
Query: 114 FFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL--SRR-FRSLK 170
L C + +D L L N +YL + + SR + +
Sbjct: 264 GLAPLGCGWVIWRDEEALPQELVFNVDYLG-----------GQIGTFAINFSRPAGQVIA 312
Query: 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA----VVCFRVSPS- 225
++ G + +A + +E + VCF++
Sbjct: 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 372
Query: 226 -------AVMDKLKTK 234
+ ++L+ +
Sbjct: 373 DPGYTLYDLSERLRLR 388
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-05
Identities = 17/86 (19%), Positives = 29/86 (33%)
Query: 46 LFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105
L L +T A D L+ L + + I V+ AY + C V D+
Sbjct: 200 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDA 259
Query: 106 FSLNAHKWFFTTLDCCCLWVKDPSDL 131
F + K F + + + +
Sbjct: 260 FVQSLDKNFMVPVGGAIIAGFNEPFI 285
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 17/84 (20%), Positives = 29/84 (34%)
Query: 46 LFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105
L + +T A D L+ L + + I V+ AY + C V D+
Sbjct: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277
Query: 106 FSLNAHKWFFTTLDCCCLWVKDPS 129
F + K F + + + S
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDS 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.94 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.93 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.92 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.92 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.91 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.91 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.9 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.9 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.9 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.9 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.9 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.9 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.9 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.89 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.89 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.89 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.89 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.89 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.88 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.88 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.88 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.88 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.88 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.87 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.87 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.87 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.87 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.87 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.87 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.86 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.86 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.85 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.85 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.84 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.84 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.84 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.84 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.84 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.83 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.83 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.83 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.83 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.82 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.81 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.81 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.8 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.8 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.8 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.8 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.8 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.79 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.79 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.79 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.79 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.79 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.79 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.79 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.79 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.78 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.78 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.78 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.78 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.78 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.78 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.78 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.78 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.78 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.78 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.78 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.77 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.77 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.77 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.77 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.76 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.76 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.76 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.76 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.76 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.76 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.76 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.76 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.76 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.76 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.75 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.75 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.75 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.75 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.75 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.75 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.75 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.74 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.74 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.74 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.74 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.74 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.74 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.74 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.74 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.74 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.74 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.74 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.73 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.73 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.73 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.73 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.73 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.72 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.72 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.72 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.72 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.71 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.71 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.71 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.71 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.71 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.71 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.71 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.71 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.71 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.71 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.7 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.7 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.7 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.7 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.69 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.69 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.69 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.69 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.68 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.68 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.68 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.68 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.68 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.67 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.67 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.67 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.67 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.67 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.66 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.66 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.66 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.66 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.65 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.65 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.65 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.65 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.65 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.65 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.64 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.64 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.64 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.63 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.63 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.63 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.62 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.61 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.61 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.61 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.61 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.6 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.6 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.39 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.6 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.59 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.59 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.58 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.58 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.58 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.58 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.58 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.57 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.57 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.57 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.57 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.56 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.56 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.56 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.56 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.55 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.55 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.54 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.54 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.54 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.54 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.54 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.53 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.53 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.53 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.53 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.52 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.52 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.52 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.51 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.51 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.51 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.51 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.5 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.5 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.5 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.49 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.49 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.48 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.48 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.48 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.48 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.48 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.46 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.46 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.46 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.45 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.44 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.43 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.42 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.41 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.35 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.29 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.19 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.15 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.1 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.1 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.64 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.04 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.79 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 98.78 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.77 |
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=326.84 Aligned_cols=278 Identities=38% Similarity=0.768 Sum_probs=244.4
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|++++.|.. ++.||+++ ++.+|+++|+++|++.+..+..|++|++++++|++|.++||++|+++|++||+|+|||
T Consensus 203 ~~~~~~g~~---~~~v~~~~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvD 277 (481)
T 4e1o_A 203 KAGLISLVK---MKFLPVDD--NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHID 277 (481)
T ss_dssp HHHHHHTCE---EEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhCCCc---eEEEEcCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEee
Confidence 355666776 99999985 4699999999999988777777888999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+||+++.+..+.++....+++.+|++++++||||++|.|+|+++++++..+.+.+...+.|+..... ...+++.++++
T Consensus 278 aA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~ 355 (481)
T 4e1o_A 278 AAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS--GVATDFMHWQI 355 (481)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT--TTSCCGGGGSS
T ss_pred hhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc--CCCCCcccccc
Confidence 9999988877777766666667899999999999999999999999998777777777888876532 23457788899
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+++|++.++++|++++.+|.++++++++++.++++++++.|+++|+++++.++..++++|++.+.
T Consensus 356 ~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--------------- 420 (481)
T 4e1o_A 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP--------------- 420 (481)
T ss_dssp SSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC---------------
T ss_pred cCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc---------------
Confidence 99999999999999999999999999999999999999999999999998888899999999764
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+..+.++.++|.++|.+++.++.+.+..++|++++++++|++||++++++|+++++++.+
T Consensus 421 ------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 421 ------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS 480 (481)
T ss_dssp ------HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 344568888999999888888888999999999999999999999999999999887653
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=327.42 Aligned_cols=277 Identities=41% Similarity=0.770 Sum_probs=225.8
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|++++.|+. ++.||+++ .+ +|+++|+++|++.+..+..|++|++++++|.+|.++|+++|+++|++||+|+|||
T Consensus 197 ~~~~~~g~~---~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD 270 (475)
T 3k40_A 197 RAGLLGGVK---LRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVD 270 (475)
T ss_dssp HHHHHHTCE---EEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHcCCc---eEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEe
Confidence 356677886 99999985 47 9999999999998777777888999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+||+++.+..+.++....+++.+|++++++|||+++|.|+|+++++++..+.+.+...+.|+..... ...+++.++++
T Consensus 271 ~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~ 348 (475)
T 3k40_A 271 AAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ--GSAPDYRHWQI 348 (475)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------------------
T ss_pred HHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcC--CCCCCcccccc
Confidence 9999888777766665666667899999999999999999999999987666666667788865432 23456778899
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+++|++.++++|++++.+|.++++++.+++.++++++++.|+++|+++++.++..++++|++.+.
T Consensus 349 ~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~--------------- 413 (475)
T 3k40_A 349 PLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS--------------- 413 (475)
T ss_dssp CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC---------------
T ss_pred cCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc---------------
Confidence 99999999999999999999999999999999999999999999999999888899999999764
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+..+.++.++|.++|.+++.++.+.+..++|++++++++|++||++++++|+++++++.+
T Consensus 414 ------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 414 ------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp ------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 334568888999999988888989999999999999999999999999999999988754
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=316.34 Aligned_cols=296 Identities=22% Similarity=0.386 Sum_probs=247.4
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|+++++|++..+++.||++++ +.+|+++|+++|++....+..|++|++++++|++|.++||++|+++|++||+|+|||
T Consensus 207 ~~~~~~g~g~~~~~~v~~d~~--~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD 284 (511)
T 3vp6_A 207 KAGAALGFGTDNVILIKCNER--GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD 284 (511)
T ss_dssp HHHHHTTSCGGGEEEECBCTT--SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCCCCcEEEeecCCC--CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEE
Confidence 456788886556999999864 699999999999988777777889999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+||+++.+..+.++....++.++|++++++||||++|.|||+++++++..+...+...+.|+......+....++.++++
T Consensus 285 ~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 364 (511)
T 3vp6_A 285 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAI 364 (511)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSS
T ss_pred ccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCC
Confidence 99999998888777666667789999999999999999999999999877777777788898876554445567788899
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
+++|++.++++|++++.+|.++++++++++.++++++++.|+++|+++++. +|..++++|++.|..... . ..
T Consensus 365 ~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~----~--~~ 438 (511)
T 3vp6_A 365 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRG----V--PD 438 (511)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSS----C--CC
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccc----c--cc
Confidence 999999999999999999999999999999999999999999999999987 578899999998753210 0 00
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECC-EeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGG-IYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.......++..+.++.+.|.++|.+++......+ .+++|++++++.++++||++++++|+++++.+
T Consensus 439 ~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 439 SPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1112223455667899999999987776544444 46899998789999999999999999988765
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=311.88 Aligned_cols=280 Identities=42% Similarity=0.786 Sum_probs=231.8
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|+++++|++ ++.||+++ ++.+|+++|+++|++.++.+..|++|++++++|.+|.++|+++|+++|++||+|+|||
T Consensus 197 ~~~~~~G~~---v~~v~~d~--~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD 271 (486)
T 1js3_A 197 RAGLIGGVK---LKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (486)
T ss_dssp HHHHHHTCE---EEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhCCCc---eEEeecCC--CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence 356778988 99999975 4699999999999998877777889999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+||+++.+..+.++....++.++|++++++|||+++|.|+|+++++++..+.+.+...+.|+...........++..+++
T Consensus 272 ~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 351 (486)
T 1js3_A 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351 (486)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSS
T ss_pred hhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCC
Confidence 99998887776665545556679999999999999999999999998865556665567777654321123456667788
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+++||+.++++|++++.+|.++++++.+++.++++++.+.|+++|+++++.+|..++++|++.+.
T Consensus 352 ~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~--------------- 416 (486)
T 1js3_A 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416 (486)
T ss_dssp CSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC---------------
T ss_pred CCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecCh---------------
Confidence 99999999999999999999999999999999999999999999999998778889999998753
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+..+.++.+.|.++|.+++.++.+.+..++|+|++++++|++||++++++|++++.++.+
T Consensus 417 ------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp ------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 234467888888889877777778888999999888899999999999999999887653
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=300.17 Aligned_cols=296 Identities=22% Similarity=0.379 Sum_probs=234.7
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|+++++|++..+++.||+++ .+.+|+++|+++|++....+..|.+|++++++|.+|.++|+++|+++|++||+|+|||
T Consensus 204 ~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD 281 (504)
T 2okj_A 204 KAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD 281 (504)
T ss_dssp HHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEe
Confidence 35667777444699999986 4699999999999887665556789999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|++++.+..+.++....++.++|++++++|||+++|.|+|+++++++..+...+...++|+..........+++.++++
T Consensus 282 ~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 361 (504)
T 2okj_A 282 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAI 361 (504)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSS
T ss_pred hhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCC
Confidence 99999988776655545555579999999999999999999999998766655566667888654332223356777888
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
+++||+.++++|++++.++.++++++.++..++++++.+.|+++|+++++. +|..++++|+..+..... ...
T Consensus 362 ~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~------~~~ 435 (504)
T 2okj_A 362 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRG------VPD 435 (504)
T ss_dssp CSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSS------CCC
T ss_pred CCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccc------ccc
Confidence 999999999999999999999999999999999999999999999999987 477888999886531000 000
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCE-eEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGI-YAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~-~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
...-.+..+..+.++.+.|.++|.+++.++.+.+. +++|+|++++++|++||++++++|+++++++
T Consensus 436 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 436 SPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred chhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00001112234567888899999877776666664 7999998778999999999999999887654
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=295.66 Aligned_cols=294 Identities=25% Similarity=0.416 Sum_probs=227.0
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|+++++|++..+++.||++++ +.+|+++|+++|++....+..|.+|++++++|.+|.++|+++|+++|++||+|+|||
T Consensus 218 ~~~~~~g~g~~~v~~v~~~~~--~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD 295 (515)
T 2jis_A 218 KGAAFLGLGTDSVRVVKADER--GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVD 295 (515)
T ss_dssp HHHHHTTSCGGGEEEECBCTT--SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCCCCcEEEEecCCC--CcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEe
Confidence 356677885446999999864 589999999999887665556789999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCc-hhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDP-SDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
+|++++.+..+.++....++.++|++++++|||+++|.|+|+++++++ ..+++.+...++|+..........+++..+.
T Consensus 296 ~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 375 (515)
T 2jis_A 296 AAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV 375 (515)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGC
T ss_pred hhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCC
Confidence 999999988776655455665799999999999999999999999988 5555556656778755432222334566678
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
++.+||+.++++|++++.+|.++++++.+++.++++++.+.|+++|+++++.++..++++|++.+.... +. ...
T Consensus 376 ~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~----~~--~~~ 449 (515)
T 2jis_A 376 VQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLR----GK--QES 449 (515)
T ss_dssp SCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGT----TC--TTS
T ss_pred CCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCcccc----cc--ccc
Confidence 899999999999999999999999999999999999999999999999999877788899988653110 00 000
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECC-EeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGG-IYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..-...+...+..+.+.+.+.|.+++..+.+.+ ..++|+|++++++|++||++++++|++++.
T Consensus 450 ~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 450 PDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 001122233445678888889987776655555 579999975789999999999999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=295.79 Aligned_cols=279 Identities=24% Similarity=0.407 Sum_probs=219.8
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++++|++..+++.||+++ .+.+|+++|+++|++....+.+|.+|++++++|.+|.++|+++|+++|++||+|+|||+
T Consensus 218 ~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~ 295 (497)
T 2qma_A 218 SASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDG 295 (497)
T ss_dssp HHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEeh
Confidence 4566777434699999986 46999999999998876555556789999999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
||+++..+.+ ++....++..+|++++++|||+++|.++|+++++++..+ +.+...+.|+..... ..+++..+.++
T Consensus 296 a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~-~~~~~~~~yl~~~~~---~~~~~~~~~~~ 370 (497)
T 2qma_A 296 AYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHD---ELPNLVDKSIA 370 (497)
T ss_dssp TTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG-GGGCC-----------------------C
T ss_pred hhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH-HHhcCCchhcCCccc---cCCCccccCCC
Confidence 9998887766 444445555799999999999999999999999988655 344444566644321 13455667788
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
++|++.++++|++++.++.++++++.++..++++++.+.|+++|+++++.++..++++|++.+...
T Consensus 371 ~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~-------------- 436 (497)
T 2qma_A 371 TTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETA-------------- 436 (497)
T ss_dssp CSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSS--------------
T ss_pred CCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCcc--------------
Confidence 999999999999999999999999999999999999999999999999878888999999876320
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..+.++.++.+.+.++|.++..++.+.+..++|+|+.++++|++||++++++|++++.++
T Consensus 437 ---~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 437 ---DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp ---CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 113455678888889998887777778888999998678999999999999999987654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=258.43 Aligned_cols=264 Identities=16% Similarity=0.210 Sum_probs=208.7
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh------Cc
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF------GI 75 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~------g~ 75 (310)
+++++|++ ++.||++++ .+.+|+++|+++|++. +.+|++++++|.+|.++|+++|+++|+++ |+
T Consensus 170 ~~~~~G~~---~~~v~~~~~-~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~ 239 (502)
T 3hbx_A 170 FARYFEVE---LKEVKLSEG-YYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDT 239 (502)
T ss_dssp HHHHTTCE---EEEECCBTT-BCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCce---eEEEecCCC-cCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCC
Confidence 56778888 999999874 4799999999999764 56899999999999999999999999999 99
Q ss_pred EEEeeccccccccc--ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 76 WVHVDAAYAGSACI--CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 76 ~l~vD~a~~~~~~~--~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
|+|||+||+++..+ .+.... ...+.++|++++++|||+++|.|+|+++++++..+...+...+.|+....
T Consensus 240 ~l~VD~A~~~~~~p~~~~~~~~-~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~------- 311 (502)
T 3hbx_A 240 PIHVDAASGGFIAPFLYPELEW-DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ------- 311 (502)
T ss_dssp CEEEECTTGGGTHHHHCTTCCC-STTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE-------
T ss_pred eEEEECCccchhhhhhCccccc-ccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC-------
Confidence 99999999876532 222221 11245799999999999999999999999988665455555556665432
Q ss_pred CCCCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhh
Q 046506 154 DYKDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~ 231 (310)
..+.++++|+. .++++|++++.++.+++.+++++..++++++++.|+++++++++.+ +..++++|++.+..-
T Consensus 312 --~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~---- 385 (502)
T 3hbx_A 312 --PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC---- 385 (502)
T ss_dssp --EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSS----
T ss_pred --CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCc----
Confidence 12345566664 6788999999999999999999999999999999999988999876 789999999976310
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEE---EEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYM---THAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.. ..++.+.|.++|.+.. .+..+.+..++|++++ ..+|+||++.|+++|+++++.+.+
T Consensus 386 ---------~~-------~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~-~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 386 ---------HT-------EFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR-EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp ---------CC-------HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CC-------HHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 00 1367888888887532 2223345689999977 579999999999999999987753
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=253.11 Aligned_cols=265 Identities=18% Similarity=0.259 Sum_probs=203.6
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh------Cc
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF------GI 75 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~------g~ 75 (310)
+++++|+. ++.||++++ ++.+|+++|+++|++. +.+|++++++|.+|.++|+++|+++|++| |+
T Consensus 155 ~~~~~G~~---v~~v~~~~~-~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~ 224 (452)
T 2dgk_A 155 FARYWDVE---LREIPMRPG-QLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI 224 (452)
T ss_dssp HHHHTTCE---EEECCCBTT-BCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCce---EEEEecCCC-CCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCC
Confidence 56778887 999999862 4699999999999764 56899999999999999999999999996 99
Q ss_pred EEEeeccccccccc--ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 76 WVHVDAAYAGSACI--CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 76 ~l~vD~a~~~~~~~--~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
|+|||+||+++..+ .+.... ...+.++|++++++|||+++|.++|+++++++..+.+.+...+.|+...
T Consensus 225 ~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-------- 295 (452)
T 2dgk_A 225 DMHIDAASGGFLAPFVAPDIVW-DFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ-------- 295 (452)
T ss_dssp CEEEECTTGGGTHHHHCTTCCC-STTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC--------
T ss_pred cEEEEcccHHHHHHhhCccchh-hcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC--------
Confidence 99999999887642 121111 1124579999999999999999999999987754434443445565421
Q ss_pred CCCCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC----CCceEEEEEEcCCcch
Q 046506 154 DYKDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP----RHFAVVCFRVSPSAVM 228 (310)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~----~~~~~v~~~~~~~~~~ 228 (310)
+..+.++++|++ .++++|++++.++.++++++.+++.++++++.+.|+++++++++.+ +..++++|++.+...
T Consensus 296 -~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~- 373 (452)
T 2dgk_A 296 -IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED- 373 (452)
T ss_dssp -EEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCC-
T ss_pred -CCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccc-
Confidence 112345677776 6788999999999999999999999999999999999988998865 567899999875210
Q ss_pred hhhhhhhccccchhHHHHHHH-HHHHHHHHHhcCcE---EEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEF-NRELLESINASGKA---YMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~g~~---~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
... ..++.+.|.++|.. +..+..+.+..++|+|+++ ++|++|+++++++|++++..+
T Consensus 374 ------------------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~-~~t~e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 374 ------------------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRR-GFEMDFAELLLEDYKASLKYL 434 (452)
T ss_dssp ------------------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence 000 13677788888863 3333333456799999885 578999999999999998776
Q ss_pred hh
Q 046506 305 LS 306 (310)
Q Consensus 305 ~~ 306 (310)
.+
T Consensus 435 ~~ 436 (452)
T 2dgk_A 435 SD 436 (452)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=220.18 Aligned_cols=258 Identities=18% Similarity=0.158 Sum_probs=190.8
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++.+|++ ++.||+++ ++.+|+++|+++|+++ +.+|++++++|++|.++|+++|+++|++||+++|||+
T Consensus 208 ~~~~~G~~---v~~v~~~~--~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 208 AAQYFGIK---LVRTPLDA--DYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHHHTCE---EEEECBCT--TSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHcCCe---eEEeeeCC--CCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEec
Confidence 45667887 99999987 4589999999999753 5688999999999999999999999999999999999
Q ss_pred ccccccccChhhh-----hhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 82 AYAGSACICPEFR-----HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 82 a~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
||+++..+..... .......++|++++++||++++|.|+|+++++++......+...+.|.... +.
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 347 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGL---------YF 347 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCS---------EE
T ss_pred ccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCc---------cc
Confidence 9987755310000 111123468999999999999999999999988754322111111111110 11
Q ss_pred CceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 157 DWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 157 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
...+.+++.. ..+++|++++.++..+++++.++..++++++.+.|+++++++++.++ .+++.|...+.+
T Consensus 348 ~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~--------- 417 (514)
T 3mad_A 348 SPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDELN--------- 417 (514)
T ss_dssp ESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECSSSC---------
T ss_pred CCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCCCC---------
Confidence 1233444443 35788999999999999999999999999999999999999988655 446666554321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
..++.+.|.++|... .+ ......+|+++++++++++++++++++|++++.++.+
T Consensus 418 --------------~~~l~~~L~~~Gi~v-~g--~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 418 --------------IYQVMEEMAGRGWRL-NG--LHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp --------------HHHHHHHHHTTTCBC-EE--ETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHhcCCEe-cc--CCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 135778888888644 32 2334579999887788889999999999999987753
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=219.43 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=174.8
Q ss_pred cceecCCCCCCEEEEecCC-CCCcccCHHHHHHHH-HHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe
Q 046506 2 AAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKI-NSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i-~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v 79 (310)
+++..|++ ++.++..+ ++++.+|+++|+++| ++..+ ..+.+|+.+.++|++|.++|+++|+++|+++|+++||
T Consensus 192 ~~~~~G~~---~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~v 266 (456)
T 2z67_A 192 AVSFVGMN---MRLVETVLDGDRVYVPVEDIENAIKKEIEL--GNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHII 266 (456)
T ss_dssp HHHHTTCE---EEEECCEEETTEEECCHHHHHHHHHHHHHT--TCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHHcCCC---ceEEEEeccCCCCCcCHHHHHHHHHHHhhC--CCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 45567887 88888632 235799999999999 43111 1356677888889999999999999999999999999
Q ss_pred ecccccccccC-hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACIC-PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|+||+...... +.......+ ++|++++++|||+++|.|+|+++++++..+... .+.|.+...
T Consensus 267 D~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~g~~~------------ 329 (456)
T 2z67_A 267 NGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYPGRAS------------ 329 (456)
T ss_dssp ECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSCSCBC------------
T ss_pred ECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCCCCCC------------
Confidence 99887655421 221111222 599999999999999999999999877554332 233332110
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
...++++|+++..++.++++++.++..++++++.+.|++++ |+.++.+ . ++++|.+....
T Consensus 330 ------~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~-~-~~v~~~~~~~~--------- 392 (456)
T 2z67_A 330 ------ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-E-SPIASCISVNS--------- 392 (456)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC-C-CSSEEEEECSS---------
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCC-C-CeEEEEEeccc---------
Confidence 01267788899888889999999999999999999999886 7766644 4 78888773211
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcE--EEE-------EeE--ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKA--YMT-------HAV--LGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~--~~~-------~~~--~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
. ..++.+.|.++|.. -+. +.. ....+.+|+|++ +++|++|||+++++|++++
T Consensus 393 -----------~--~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~-~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 393 -----------D--PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAA-IGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp -----------C--HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECC-TTCCHHHHHHHHHHHHTC-
T ss_pred -----------H--HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhh-cCCCHHHHHHHHHHHHHHh
Confidence 0 13466666666631 111 000 112468999955 7899999999999998643
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-27 Score=221.53 Aligned_cols=257 Identities=16% Similarity=0.212 Sum_probs=190.8
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+++.+|+. ++.||++++ .+.+|+++|+++|+++ +.+|++++++|++|.++|+++|+++|++||+++|||+
T Consensus 174 ~~~~~G~~---~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~ 243 (497)
T 3mc6_A 174 AAYYFGMK---LRHVELDPT-TYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDS 243 (497)
T ss_dssp HHHHSCCE---EEEECBCTT-TCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEET
T ss_pred HHHHcCCe---EEEEecCcc-cCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEEC
Confidence 45677887 999999872 4689999999999753 5689999999999999999999999999999999999
Q ss_pred ccccccccChhh------hhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 82 AYAGSACICPEF------RHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 82 a~~~~~~~~~~~------~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
||+++..++... ........++|+++.++|||+++|.|+|+++++++......+...+.|.... +
T Consensus 244 a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~ 314 (497)
T 3mc6_A 244 CLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL---------Y 314 (497)
T ss_dssp TTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC---------B
T ss_pred cchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC---------c
Confidence 998765542110 0011122468999999999999999999999887754322112222222211 1
Q ss_pred CCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 156 KDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
....+.++|.. ..+++|++++.++.++++++.++..++++++++.|.+ +|+++++.++..++++|...+.+
T Consensus 315 ~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~~------- 387 (497)
T 3mc6_A 315 GSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLN------- 387 (497)
T ss_dssp CCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTTT-------
T ss_pred CCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCCC-------
Confidence 12223333332 2567899999999999999999999999999999999 79999987888888888765421
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
..++.+.|.++|..... . .....+|++++ .++++|+++++++|++++..+.
T Consensus 388 ----------------~~~l~~~L~~~Gi~v~~-~--~~~~~~ri~~~--~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 388 ----------------IHELSDRLSKKGWHFNA-L--QKPVALHMAFT--RLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp ----------------HHHHHHHHHTTTCBCEE-C--CSSCCEEEECC--TTTTCTHHHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHhCCEEEec-C--CCCCeEEEEEe--CCCHHHHHHHHHHHHHHHHHHH
Confidence 14677888888854322 1 12346799966 4789999999999999998764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=201.12 Aligned_cols=248 Identities=17% Similarity=0.243 Sum_probs=183.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ +.+|+++|+++|++. .+.++++++++|++|.+.|+++|+++|++||+++++|++
T Consensus 140 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea 209 (397)
T 3f9t_A 140 REMMDLE---YIYAPIKED--YTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAA 209 (397)
T ss_dssp HHHHTCE---EEEECBCTT--SSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHcCce---eEEEeeCCC--CcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEcc
Confidence 4556776 999999864 589999999999872 144788889999999999999999999999999999999
Q ss_pred cccccccChhhh--------hhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 83 YAGSACICPEFR--------HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 83 ~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|+++.+...... ...... ++|++++++||++++|.++|+++++++... +.+....+|+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~------- 280 (397)
T 3f9t_A 210 FGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETRQ------- 280 (397)
T ss_dssp TGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSEE-------
T ss_pred ccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCCc-------
Confidence 987655332110 000112 589999999999999999999999887543 333222334333210
Q ss_pred CCCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 155 YKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
..+.+++. ...+++++++..++..+++++.++..++++++.+.|+++ +++++.++..++++|.....
T Consensus 281 ---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-------- 348 (397)
T 3f9t_A 281 ---ATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDEDY-------- 348 (397)
T ss_dssp ---CSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTTH--------
T ss_pred ---cccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCCH--------
Confidence 11223332 245677888888888889999999999999999999988 88877777888887765431
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.++.+.|.++|.. +.+.. ..+++|++++ ..++++|+++++++|+++++
T Consensus 349 -----------------~~~~~~l~~~gi~-v~~~~--~~~~~Ri~~~-~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 349 -----------------KEVCKKLRDRGIY-VSVCN--CVKALRIVVM-PHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp -----------------HHHHHHHHHTTCB-CEECS--SSSEEEEECC-TTCCHHHHHHHHHHHHHHC-
T ss_pred -----------------HHHHHHHHhCCeE-EeccC--CCCEEEEEEc-CCCCHHHHHHHHHHHHHhhC
Confidence 4677778788754 33321 2478999966 67899999999999988653
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-25 Score=202.93 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=139.9
Q ss_pred CcceecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe
Q 046506 1 KAAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v 79 (310)
||+.++|++ .++|++.+ ++.+.+|+++|+++|.+.... .+.+|+.+.+++..|.++||++|+++||+||+|+||
T Consensus 159 kAl~l~Gl~---p~~v~~~~~~~~~~id~~~le~aI~~~~~~--~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~V 233 (450)
T 3bc8_A 159 KSMVTAGFE---PVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 233 (450)
T ss_dssp HHHHHTTCE---EEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHcCCe---eEEEEeeecCccCCcCHHHHHHHHHhcCCC--CEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEE
Confidence 577889998 66665521 125799999999999885311 244566655555567899999999999999999999
Q ss_pred ecccccccccChhhhhhhcCC--CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
|+|||+.......... ..+ +++|+++.|+|||+++|.|+++++++++..++.... .|....
T Consensus 234 D~A~G~~~~~~~~l~~--~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g~~------------ 296 (450)
T 3bc8_A 234 NNAYGLQSSKCMHLIQ--QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRA------------ 296 (450)
T ss_dssp ECTTTTTCHHHHHHHH--HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCB------------
T ss_pred ECCCchhhhhhHhHHH--HHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---HhhcCC------------
Confidence 9999876554322110 122 479999999999999999999999998866644321 222111
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCC
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRH 214 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~ 214 (310)
.+ ...+.+|.++..+|.+++.+.++++.++++++++.|++++ +++++..+.
T Consensus 297 ----s~--SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~ 350 (450)
T 3bc8_A 297 ----SA--SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPH 350 (450)
T ss_dssp ----CS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTT
T ss_pred ----cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCcc
Confidence 00 1358899999999999999999999999999999999888 888876543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=197.94 Aligned_cols=250 Identities=10% Similarity=0.052 Sum_probs=173.6
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhh
Q 046506 15 AIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR 94 (310)
Q Consensus 15 ~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~ 94 (310)
.+|.++ .+.+|+++|+++|++.+. .+.+|++++.+|++|.+.|+++|+++|++||+++++|++|+.+..+.+...
T Consensus 190 ~~~~~~--~~~~d~~~l~~~i~~~~~---~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~ 264 (465)
T 3e9k_A 190 IKPREG--EETLRIEDILEVIEKEGD---SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHD 264 (465)
T ss_dssp ECCCTT--CSSCCHHHHHHHHHHHGG---GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHH
T ss_pred EecCCC--CCccCHHHHHHHHHhcCC---CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhh
Confidence 344443 468999999999986421 256899999999999999999999999999999999999998887665322
Q ss_pred hhhcCCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccc-----cccCCCCceeccCCC--c
Q 046506 95 HFIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK-----QVVDYKDWQITLSRR--F 166 (310)
Q Consensus 95 ~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~--~ 166 (310)
. ++|++++++||+++ +|.|+|+++++++. +.........+......... ..+......++.+.+ .
T Consensus 265 ~------~~D~~~~s~~K~l~~gp~~~g~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 337 (465)
T 3e9k_A 265 W------GVDFACWCSYKYLNAGAGGIAGAFIHEKH-AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPIL 337 (465)
T ss_dssp H------TCCEEEECSSSTTCCCTTCCCEEEECGGG-TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHH
T ss_pred c------CCCEEEECcccccccCCCceEEEEEcHHH-HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHH
Confidence 1 58999999999994 78889999987553 22211111111111000000 000111122233333 2
Q ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC----------CCeEEecCC----CceEEEEEEcCCcchhhhh
Q 046506 167 RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD----------KRFEVVFPR----HFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~----------~~~~v~~~~----~~~~v~~~~~~~~~~~~~~ 232 (310)
..+++.+++..+...+++++.++..++++++.+.|+++ ++++++.+. ..++++|.+....
T Consensus 338 ~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~------ 411 (465)
T 3e9k_A 338 LVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPN------ 411 (465)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTT------
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCH------
Confidence 34566777777766678999999999999999999875 789988654 2678888776311
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++.+.|.++|.+. . ....+++|+|+.+.+++++||++++++|++++...
T Consensus 412 ------------------~~l~~~L~~~Gi~v-~---~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 412 ------------------KDVFQELEKRGVVC-D---KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp ------------------CCHHHHHHTTTEEC-E---EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ------------------HHHHHHHHHCCEEE-e---cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 25677787887543 2 23457999997567899999999999999987643
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=193.97 Aligned_cols=261 Identities=11% Similarity=0.026 Sum_probs=175.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ +.+|+++|+++|++. .+.+|++++++|++|.+.|+++|+++|++||+++++|++
T Consensus 107 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea 176 (411)
T 3nnk_A 107 ARRCRAE---VHTIEVPWG--EVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDAT 176 (411)
T ss_dssp HHHTTCE---EEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECT
T ss_pred HHHcCCe---EEEEecCCC--CCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECC
Confidence 3456766 999999764 489999999999863 145888899999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhc---cCCcccccccccc--cccc-CCC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS---TNPEYLKNKATES--KQVV-DYK 156 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~---~~~~y~~~~~~~~--~~~~-~~~ 156 (310)
|+.+..+.+.. . .++|++++++|||+++|.|+|+++++++ .+..... ..+.|........ .... .+.
T Consensus 177 ~~~~~~~~~~~-----~-~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~ 249 (411)
T 3nnk_A 177 ASLGGNPLETD-----V-WGLDAVSAGMQKCLGGPSGTSPITLSAR-MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYF 249 (411)
T ss_dssp TTBTTBCCCTT-----T-TTCSEEECCSTTTTCCCSSEEEEEECHH-HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTT
T ss_pred cccCCcccchh-----c-cCCcEEEecCccccCCCCceEEEEECHH-HHHHHhhcccccccccccccccccCCCCccccc
Confidence 98766544321 1 2589999999999999999999988655 3322221 1122221110000 0000 000
Q ss_pred ----------CceeccCC-C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEE
Q 046506 157 ----------DWQITLSR-R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFR 221 (310)
Q Consensus 157 ----------~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~ 221 (310)
...+..+. . ....++.++++.+...+++++.++..++++++.+.|+++ ++++..++. .++++|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 328 (411)
T 3nnk_A 250 DLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVV 328 (411)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEE
T ss_pred chHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEE
Confidence 00111111 1 123445556665555568899999999999999999987 887764432 5677777
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
++... + ..++.+.|.++ |. .+.+.. ....+++|++++++.++++|+++++++|++
T Consensus 329 ~~~~~---------------~-------~~~l~~~l~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 329 IPQGI---------------N-------GDQARKLMLEDFGI-EIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp CCTTC---------------C-------HHHHHHHHHHHHSE-EEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CCCCC---------------C-------HHHHHHHHHHhcCe-EEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 64310 0 13566777666 64 444321 123468999975566799999999999999
Q ss_pred HHHHH
Q 046506 300 HLEAL 304 (310)
Q Consensus 300 ~~~~~ 304 (310)
+++++
T Consensus 386 ~l~~~ 390 (411)
T 3nnk_A 386 VLNYL 390 (411)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98765
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=186.16 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=175.2
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++.+|.+++ +.+|+++|+++|++.. +.+|++++++|++|.+.|+++|.++|++||+++++|++|
T Consensus 97 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~ 166 (384)
T 3zrp_A 97 KRYPVN---VKVLRPSPG--DYVKPGEVEEEVRKSE-----YKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVS 166 (384)
T ss_dssp TTSSCE---EEEECCSTT--CCCCHHHHHHHHHHSC-----EEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTT
T ss_pred HHcCCc---EEEecCCCC--CCCCHHHHHHHHHhCC-----CcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcc
Confidence 345665 999999874 4899999999998731 568889999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhh-hcc-CCccccccccccccccCC-CC---
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNS-LST-NPEYLKNKATESKQVVDY-KD--- 157 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~-~~~-~~~y~~~~~~~~~~~~~~-~~--- 157 (310)
+.+....+.. . .++|++++++||++++|.|+|+++++++ .+... ... .+.+...... .... ..
T Consensus 167 ~~~~~~~~~~-----~-~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 235 (384)
T 3zrp_A 167 SVGAEEVKAE-----E-WNVDVYLTASQKALGSAAGLGLLLLSPK-ALSILDSQNSIAGYYLDLRN----WLPVMRGAEE 235 (384)
T ss_dssp TTTTSCCCTT-----T-TTCSEEEEETTSTTCCCSSEEEEEECHH-HHHHHHHCCCSCCSTTCHHH----HHHHHHHHHT
T ss_pred cccCcccccc-----c-cCCCEEEecCcccccCCCceEEEEECHH-HHHHhcCCCCCCcccccHHH----HHHHHHhhcc
Confidence 8766543321 1 1489999999999998999999988655 33332 110 0111100000 0000 00
Q ss_pred -ceec-cCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----CceEEEEEEcCCcchhh
Q 046506 158 -WQIT-LSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----HFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 158 -~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~ 230 (310)
.... ++.. ....++.+++..+...+++++.++..++++++.+.|+++ ++++..++ ...+++|.+...+
T Consensus 236 ~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---- 310 (384)
T 3zrp_A 236 GKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVAD---- 310 (384)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSSC----
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCCC----
Confidence 0000 1111 123445566666655668899999999999999999988 88877544 2556677765421
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
..++.+.|.++|.... +......+.+|+++. .+++++|+++++++|++++.++.
T Consensus 311 -------------------~~~~~~~l~~~gi~v~-~g~~~~~~~iRi~~~-~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 311 -------------------PQKVLAGTVNEGVEFA-PGVHPAFKYFRIGHM-GWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp -------------------HHHHHHHHHTTTCCCE-ECCCTTCCEEEEECC-SSCCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHCCEEEe-cCCCCCcCEEEEecc-ccCCHHHHHHHHHHHHHHHHHcC
Confidence 1467777878875433 322111278999966 46999999999999999998764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=186.83 Aligned_cols=254 Identities=11% Similarity=0.043 Sum_probs=168.5
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++.+|.+++ +.+|+++|+++|++. .+.+|++++++|++|.+.|+++|.++|++||+++++|++|
T Consensus 94 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~ 163 (353)
T 2yrr_A 94 ALHGLD---PEVLDFPPG--EPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVT 163 (353)
T ss_dssp HHTTCC---EEEEECCTT--SCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHcCCc---eEEEeCCCC--CCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCc
Confidence 446776 999999864 489999999999862 1447888999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+..+.+. .. . ++|++++++|||+++|.|+|+++++++ .+.. +...+.+...... ..+... .....++
T Consensus 164 ~~~~~~~~~-~~----~-~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~-l~~~~~~~~~~~~-~~~~~~--~~~~~~~ 232 (353)
T 2yrr_A 164 TLGMLPFSM-RA----M-GVDYAFTGSQKCLSAPPGLAPIAASLE-ARKA-FTGKRGWYLDLAR-VAEHWE--RGGYHHT 232 (353)
T ss_dssp TTTTSCCCH-HH----H-TCSEEECCTTSTTCCCSSCEEEEECHH-HHHH-CCCCSCSTTCHHH-HHHHHT--TCCCSSC
T ss_pred ccccccccc-cc----c-CceEEEecCcccccCCCceEEEEECHH-HHHH-hccCCCccccHHH-Hhhhhh--cCCCCCC
Confidence 765543321 11 1 479999999999999889999988655 3322 2111111100000 000000 0001111
Q ss_pred CCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhccccc
Q 046506 164 RRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 164 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
... ...++.++++.+...+++++.++..++++++.+.|+++ ++++..++ ...+++|.++...
T Consensus 233 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-------------- 297 (353)
T 2yrr_A 233 TPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV-------------- 297 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC--------------
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC--------------
Confidence 111 22344556665555568889999999999999999987 89887543 3445667764210
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHH-HHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVM-VAWTVVQEHLE 302 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~-~li~~l~~~~~ 302 (310)
+ ..++.+.|.++|.....+......+.+|+|++. +++++|++ +++++|++++.
T Consensus 298 -~-------~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 298 -D-------ADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMG-EGARREAYQAFLKALDRALA 351 (353)
T ss_dssp -C-------HHHHHHHHHHTTEECEECCGGGTTTCEEEECSG-GGSCHHHHHHHHHHHHHHHH
T ss_pred -C-------HHHHHHHHHHCCEEEeCCccccCCCeEEEecCc-cCCHHHHHHHHHHHHHHHHh
Confidence 0 135677777776433322211234689999754 57888888 99999998764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=193.38 Aligned_cols=261 Identities=11% Similarity=0.057 Sum_probs=172.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ +.+|+++|+++|++.. +.+|++++++|++|.+.|+++|+++|++||+++++|++
T Consensus 105 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a 174 (416)
T 3isl_A 105 AERYGAN---VHMLECEWG--TVFDPEDIIREIKKVK-----PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAV 174 (416)
T ss_dssp HHHTTCE---EEEEECCTT--CCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECT
T ss_pred HHhcCCe---eEEEecCCC--CCCCHHHHHHHHhhCC-----CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECC
Confidence 4456776 999999875 4899999999998421 45889999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC---C--------cccccccccccc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN---P--------EYLKNKATESKQ 151 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~---~--------~y~~~~~~~~~~ 151 (310)
|+.+..+.+.. . .++|++++++|||+++|.|+|+++++++ .+....... . ++..+.......
T Consensus 175 ~~~~~~~~~~~-----~-~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~ 247 (416)
T 3isl_A 175 ATIGGCEVKVD-----E-WKIDAAIGGTQKCLSVPSGMAPITYNER-VADVIAARKKVERGIATQADRAALSGNRPITSN 247 (416)
T ss_dssp TTTTTSCCCTT-----T-TTCSEEECCSSSTTCCCSSEEEEEECHH-HHHHHHTC------------------CCCCSCS
T ss_pred ccccCCCcchh-----h-cCCCEEEecCccccCCCCCeEEEEECHH-HHHHhhccccccccccccccchhccCCCCCCcc
Confidence 98766544321 1 2589999999999999999999988655 332221110 0 000000000000
Q ss_pred ccCC-------CCceeccCC-C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEE
Q 046506 152 VVDY-------KDWQITLSR-R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVC 219 (310)
Q Consensus 152 ~~~~-------~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~ 219 (310)
..+. ....+..+. . ....++.++++.+...+++++.++..++++++.+.|.++ ++++..++. .++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 326 (416)
T 3isl_A 248 YFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTC 326 (416)
T ss_dssp TTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEE
T ss_pred ccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEE
Confidence 0000 011111111 1 123445566665555568999999999999999999985 888775432 45777
Q ss_pred EEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 220 FRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
|.+.... + ..++.+.|.++ |. .+.+.. ....+.+|++++.+.++++++++++++|
T Consensus 327 ~~~~~~~---------------~-------~~~l~~~L~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l 383 (416)
T 3isl_A 327 VEIPGGI---------------D-------GESVRDMLLAQFGI-EIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGL 383 (416)
T ss_dssp EECCTTC---------------C-------HHHHHHHHHHHHCE-ECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred EeCCCCC---------------C-------HHHHHHHHHHhCCE-EEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHH
Confidence 7774210 0 13566777666 64 433321 1235689999765445555599999999
Q ss_pred HHHHHHH
Q 046506 298 QEHLEAL 304 (310)
Q Consensus 298 ~~~~~~~ 304 (310)
++++.++
T Consensus 384 ~~~~~~~ 390 (416)
T 3isl_A 384 EAVLLRH 390 (416)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998765
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=184.03 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=171.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|.+++ +.+|+++|+++|++. +.+|++++.+|++|.+.|+++|+++|++||+++++|++|
T Consensus 135 ~~~g~~---~~~~~~~~~--~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~ 203 (406)
T 1kmj_A 135 ARVGAE---LRVIPLNPD--GTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQ 203 (406)
T ss_dssp HHHTCE---EEEECBCTT--SCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HhCCCE---EEEEecCCC--CCcCHHHHHHHhccC------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchh
Confidence 345665 889999864 589999999999653 568889999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccc-----ccccCCCCc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATES-----KQVVDYKDW 158 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~-----~~~~~~~~~ 158 (310)
+.+..+.+. .. . +.|+++.|+||++ +|.|+|+++++ +..+....... ..+..... ...+.....
T Consensus 204 ~~g~~~~~~-~~----~-~~d~~~~s~~K~~-g~~G~G~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 272 (406)
T 1kmj_A 204 AVMHHPVDV-QA----L-DCDFYVFSGHKLY-GPTGIGILYVK-EALLQEMPPWE---GGGSMIATVSLSEGTTWTKAPW 272 (406)
T ss_dssp TTTTSCCCH-HH----H-TCSEEEEEGGGTT-SCTTCEEEEEC-HHHHHHCCCSS---CSTTSEEEEETTTEEEECCTTG
T ss_pred hcCCCCCcc-cc----c-CCCEEEEEchhcc-CCCCcEEEEEe-HHHHhhcCCcc---cCCCceeecccccccccCCCch
Confidence 876654321 11 1 4899999999988 67789999886 43433221111 00000000 000000011
Q ss_pred eeccCCC-cc-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRR-FR-SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.++.+.+ .. .+++.++++.+...+++++.++..++++++.+.|+++|++++..+. ..+++.|.+.+.+
T Consensus 273 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 343 (406)
T 1kmj_A 273 RFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH--------- 343 (406)
T ss_dssp GGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCC---------
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCC---------
Confidence 1222222 11 2233355565544577888999999999999999998899987543 6778888764321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAV--------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.|.+.|.....+.. .+..+++|+|++ .++|++|+++++++|+++++.+
T Consensus 344 --------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 344 --------------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp --------------HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEee-cCCCHHHHHHHHHHHHHHHHhh
Confidence 13466677777754333221 122478999966 5789999999999999988754
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=197.14 Aligned_cols=245 Identities=13% Similarity=0.046 Sum_probs=167.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++++|++++ +.+++++++.+++++ +.+|++++++|.+|++.|+ +|+++|+++|||++|
T Consensus 123 ~~~G~~---~~~~~~~~~--~~~~~~~~~~~i~~~------t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q 186 (377)
T 3e77_A 123 KKFGTI---NIVHPKLGS--YTKIPDPSTWNLNPD------ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSS 186 (377)
T ss_dssp TTTSEE---EECSCCCSS--SCSCCCGGGCCCCTT------CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTT
T ss_pred HHhCCc---eEEeccCCC--cCCCCChHHhccCCC------ccEEEEeCccCchheEchh-----hhccCCCEEEEEccc
Confidence 334554 667787653 357788777766554 3478899999999999999 588999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+..+.+... .|++++++|||+ +|.|+|+++++++.. .+.-+..|.|+..... . +.....+
T Consensus 187 ~~g~~~id~~~--------~~~~~~s~~K~~-gp~G~g~l~~~~~~l-~~~~~~~p~~~~~~~~-----~---~~~~~~~ 248 (377)
T 3e77_A 187 NFLSKPVDVSK--------FGVIFAGAQKNV-GSAGVTVVIVRDDLL-GFALRECPSVLEYKVQ-----A---GNSSLYN 248 (377)
T ss_dssp TTTSSCCCGGG--------CSEEEEEGGGTT-SCTTCEEEEEETTSC-SCCCTTSCGGGCHHHH-----H---TTTTCSS
T ss_pred ccCCCCCchhh--------cCEEEEeccccc-CCCccEEEEEcHHHH-hhccCCCCchhhHHHH-----h---hcCCCCC
Confidence 99998887432 457899999999 599999999997742 2221122333211100 0 0000112
Q ss_pred CC--cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-C--Cc-eEEEEEEcCCcchhhhhhhhc
Q 046506 164 RR--FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-R--HF-AVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 164 ~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~--~~-~~v~~~~~~~~~~~~~~~~~~ 236 (310)
++ +..+++.++++.+..+ |++++.++..++++++++.|.++||+.+... + +. .+++|.+++.+.
T Consensus 249 Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~--------- 319 (377)
T 3e77_A 249 TPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKG--------- 319 (377)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTC---------
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCC---------
Confidence 22 2346677788877777 8999999999999999999999999986431 1 33 368999986320
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
. ..+...+.+.+.+.|.. +.+. ....+.+|+|+. .++|+||||+|+++|+++.++
T Consensus 320 ------~---~~~~~~~l~~l~~~Gi~-~~~g-~~~~g~iRiS~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 320 ------D---DALEKRFLDKALELNML-SLKG-HRSVGGIRASLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ------C---HHHHHHHHHHHHHTTEE-SCBC-CTTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ------c---hhHHHHHHHHHHHCCcE-EeCC-CCcCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 0 11212455556666643 3221 122356999976 579999999999999998765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=181.88 Aligned_cols=243 Identities=13% Similarity=0.101 Sum_probs=170.5
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. ++.+|.+++ +.+|+++|+++|++. +.++++++++|++|.+.|+++|+++|++||+ +++|++|+.
T Consensus 111 ~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~ 178 (382)
T 4hvk_A 111 QGFE---VEYIPVGKY--GEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASV 178 (382)
T ss_dssp TTCE---EEEECBCTT--SCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTB
T ss_pred cCCE---EEEeccCCC--CCcCHHHHHHHhccC------ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhc
Confidence 3665 899999864 489999999999754 4589999999999999999999999999999 999999987
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC-
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR- 164 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~- 164 (310)
+....+... .++|++++++||++ +|.|+|+++++++..+ . .+...... ...+..+.
T Consensus 179 ~~~~~~~~~------~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~------~-~~~~~~~~---------~~~~~~~~~ 235 (382)
T 4hvk_A 179 GQIEVDVEK------IGADMLTISSNDIY-GPKGVGALWIRKEAKL------Q-PVILGGGQ---------ENGLRSGSE 235 (382)
T ss_dssp TTBCCCHHH------HTCSEEEEESGGGT-SCTTCEEEEEETTCCC------C-CSSCSSCT---------GGGTSCSCC
T ss_pred CCCCCCchh------cCCCEEEEeHHHhc-CCCceEEEEEcCccCc------C-cccccCCC---------cCccccCCc
Confidence 765543221 14899999999975 5778999998876321 1 11111110 00011111
Q ss_pred C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcchhhhhhhhccccc
Q 046506 165 R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
. ....++.+++... .++++++.++..++++++.+.|.++|++++..++. .+++.|.+.+.+
T Consensus 236 ~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 300 (382)
T 4hvk_A 236 NVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIE-------------- 300 (382)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCC--------------
T ss_pred CHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCC--------------
Confidence 1 1223334444433 46789999999999999999999999999875442 357788776432
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CC-----------------EeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVL--GG-----------------IYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~-----------------~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+.|.....+... .. .+.+|++++ +.++++|+++++++|++++
T Consensus 301 ---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 301 ---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp ---------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHHHHHHH
Confidence 135666777776543221111 00 478999966 5799999999999999999
Q ss_pred HHHhhcc
Q 046506 302 EALLSAS 308 (310)
Q Consensus 302 ~~~~~~~ 308 (310)
+++.+.+
T Consensus 371 ~~~~~~~ 377 (382)
T 4hvk_A 371 ERLRSMS 377 (382)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 8876543
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=190.86 Aligned_cols=247 Identities=13% Similarity=0.040 Sum_probs=168.2
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh-CcEEEeecc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF-GIWVHVDAA 82 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~-g~~l~vD~a 82 (310)
+..|+. ++.++.+++ +.+|+++|+ +++. +.+|++++++|++|.+.|+++|+++|++| |+++++|++
T Consensus 103 ~~~g~~---~~~v~~~~~--~~~d~~~l~--~~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a 169 (362)
T 3ffr_A 103 GELGRE---AYKEEAAFG--KGFYPADIT--VPAD------AEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAV 169 (362)
T ss_dssp HHTTCE---EEEEECCTT--CCCCGGGCC--CCTT------CCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECT
T ss_pred HHhCCC---eEEEecCCC--CCCCHHHHh--ccCC------ccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecc
Confidence 345665 899998764 589999998 3332 55888889999999999999999999999 999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC-----CccccccccccccccC-CC
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN-----PEYLKNKATESKQVVD-YK 156 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-----~~y~~~~~~~~~~~~~-~~ 156 (310)
|+.+..+.+. ..+|++++++|||+++|.|+|+++++++ .+.+..... ..+...... ..+ ..
T Consensus 170 ~~~~~~~~~~--------~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~----~~~~~~ 236 (362)
T 3ffr_A 170 SSLPYPKFDW--------TKIDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKALLAKRKSIGTYHTIPS----MLEKAR 236 (362)
T ss_dssp TTTTSSCCCT--------TSCSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHHHHTTCCCCSTTSHHH----HHHHHT
T ss_pred cccCCcccCh--------hHCcEEEEecccccCCCCceEEEEECHH-HHHHhhhccccCCCCcccccHHH----HHHHhh
Confidence 9876544321 1289999999999998889999887755 332221110 011110000 000 00
Q ss_pred CceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----CceEEEEEEcCCcchhhh
Q 046506 157 DWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----HFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~~ 231 (310)
.....++.. ....++.++++.+...+++++.++..++++++.+.|+++|++++..+. ...+++|.+.. +
T Consensus 237 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~----- 310 (362)
T 3ffr_A 237 VNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-L----- 310 (362)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-C-----
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-C-----
Confidence 000011111 123445566665555568999999999999999999999999987522 24567777654 2
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.++|.....+....+.+.+|+|++ ..++++|+++++++|+++.
T Consensus 311 ------------------~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 311 ------------------PGEINKILEPFDMAVGAGYGSKKETQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ------------------HHHHHHHHGGGTEEEEECSGGGTTTEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred ------------------HHHHHHHHHHCCeEEecCccccCCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 14677888888644333222224578999976 5789999999999998763
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=189.97 Aligned_cols=262 Identities=9% Similarity=0.053 Sum_probs=172.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|.++++ .+|+++|+++|++.. +.+|++++++|++|.+.|+++|.++|++||+++++|++|
T Consensus 118 ~~~g~~---~~~~~~~~~~--~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~ 187 (393)
T 3kgw_A 118 DRIGAR---VHQMIKKPGE--HYTLQEVEEGLAQHK-----PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVA 187 (393)
T ss_dssp HHTTCE---EEEEECCTTC--CCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTT
T ss_pred HHcCCc---eEEEeCCCCC--CCCHHHHHHHHhhCC-----CcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCc
Confidence 445665 8999998653 899999999998731 458888899999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCC---ccccccccccccccCC-CCce
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNP---EYLKNKATESKQVVDY-KDWQ 159 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~-~~~~ 159 (310)
+.+....+.. . .++|++++++||++++|.|+|+++++++ .++....... .+...... ....+.. ....
T Consensus 188 ~~g~~~~~~~-----~-~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 259 (393)
T 3kgw_A 188 SLGGVPIYMD-----Q-QGIDIMYSSSQKVLNAPPGISLISFNDK-AKYKVYSRKTKPVSFYTDITY-LAKLWGCEGETR 259 (393)
T ss_dssp TTTTSCCCTT-----T-TTCCEEEEESSSTTCCCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHH-HHHHTTCSSSCC
T ss_pred cccCcccchh-----h-cCCCEEEecCcccccCCCceeEEEECHH-HHHHHhccCCCCCceeecHHH-HHHhhhhccccC
Confidence 8665443211 1 2589999999999999999999988655 3333221111 11000000 0000000 0000
Q ss_pred eccC-CC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---C-ceEEEEEEcCCcchhhhhh
Q 046506 160 ITLS-RR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---H-FAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 160 ~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~-~~~v~~~~~~~~~~~~~~~ 233 (310)
+..+ .. ....++.+++..+..++++++.++..++++++.+.|+++ ++++..++ . ..+++|.+....
T Consensus 260 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------- 331 (393)
T 3kgw_A 260 VIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGY------- 331 (393)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTB-------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCCC-------
Confidence 1111 11 122344455665555668999999999999999999988 88776332 1 345556654310
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 234 KYENSLLSEEERINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.|.++ |.....+......+++|++++.+.++++|+++++++|+++++++.+
T Consensus 332 --------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 332 --------N-------WRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp --------C-------HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred --------C-------HHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 0 13566777776 6433322211235689999755556999999999999999987643
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=185.63 Aligned_cols=257 Identities=14% Similarity=0.060 Sum_probs=172.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|+. ++.+|.+++ +.+|+++|+++|++.. .+.+|++++++|++|.+.|+++|+++|++||+++++|++|
T Consensus 115 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~ 185 (386)
T 2dr1_A 115 ESNGRK---AVVLEYEPG--KAVKPEDLDDALRKNP----DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVS 185 (386)
T ss_dssp HHTTCE---EEEEECCTT--CCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhCCc---eEEEecCCC--CCCCHHHHHHHHhcCC----CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccc
Confidence 445666 899999863 5799999999996521 2457888898999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCC-Cceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYK-DWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~-~~~~~ 161 (310)
+.+..+.+. ... ++|+++.|+||++++|.|+|+++++++ .+....... ..+...... ...... .....
T Consensus 186 ~~~~~~~~~-----~~~-~~di~~~s~sK~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 255 (386)
T 2dr1_A 186 AMGGADIKF-----DKW-GLDVVFSSSQKAFGVPPGLAIGAFSER-FLEIAEKMPERGWYFDIPL---YVKYLKEKESTP 255 (386)
T ss_dssp TBTTBCCCT-----TTT-TCSEEEEETTSTTCCCSSCEEEEECHH-HHHHHTTCTTCCSTTCHHH---HHHHHHHHSSCS
T ss_pred cccCccccc-----ccc-CCcEEEEeccccccCCCceEEEEECHH-HHHHHhcCCCCceEEeHHH---HHHhhccCCCCC
Confidence 877653321 111 489999999999999988999988654 333221100 111000000 000000 00001
Q ss_pred cCCC-cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhc
Q 046506 162 LSRR-FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 162 ~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
++.. ....++.++++.+... +++++.++..++++++.+.|+++ ++++..+. ..+++++.+....
T Consensus 256 ~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~---------- 324 (386)
T 2dr1_A 256 STPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI---------- 324 (386)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC----------
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC----------
Confidence 1111 1234455566655444 57889999999999999999987 88776442 3567777765310
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.|.++|. .+.+.. ....+++|++++ .+++++|+++++++|++++..+
T Consensus 325 -----~-------~~~~~~~l~~~gi-~v~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 325 -----K-------GDEVYEAMRKRGF-ELAKGYGSVKEKTFRIGHM-GYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp -----C-------HHHHHHHHHHTTE-ECEECCGGGTTTEEEEECC-SSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----C-------HHHHHHHHHHCCe-EEecCccccCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 0 1457777877764 444322 113468999966 4789999999999999988765
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=185.00 Aligned_cols=258 Identities=11% Similarity=0.052 Sum_probs=171.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.+|++++ +.+|+++|+++|++.. .+.+|++++++|++|.+.|+++|+++|++||+++++|++|+
T Consensus 104 ~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 174 (392)
T 2z9v_A 104 RYSPH---LLEIEVPYN--EAIDPQAVADMLKAHP----EITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSS 174 (392)
T ss_dssp HHCSC---EEEEECCTT--SCCCHHHHHHHHHHCT----TCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HcCCc---eEEeeCCCC--CCCCHHHHHHHHhcCC----CCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccc
Confidence 35766 999999875 3799999999996521 14578889999999999999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC--Cc-cccccccccccccCCCCceec
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN--PE-YLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~--~~-y~~~~~~~~~~~~~~~~~~~~ 161 (310)
.+..+.+. . .. ++|++++|+|||+++|.|+|+++++++ .++...... +. +........ . .+......
T Consensus 175 ~g~~~~~~-~----~~-~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~-~--~~~~~~~~ 244 (392)
T 2z9v_A 175 FGGMKTHP-E----DC-KADIYVTGPNKCLGAPPGLTMMGVSER-AWAKMKANPLAPRASMLSIVDWE-N--AWSRDKPF 244 (392)
T ss_dssp BTTBSCCG-G----GG-TCSEEEECSSSTTCCCSCCEEEEECHH-HHHHHHTCTTSCCSSTTCSGGGT-T--TTSTTSCC
T ss_pred cCCccccc-c----cc-cceEEEecCcccccCCCceeEEEECHH-HHHHhhhccCCCCceeccHHHHH-h--hhcccCCC
Confidence 76554331 1 11 489999999999999999999988654 333221111 11 111100000 0 00000111
Q ss_pred -cCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----CceEEEEEEcCCcchhhhhhhh
Q 046506 162 -LSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----HFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 162 -~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
++... ..+++.++++.+...+++++.++..++++++.+.|+++ ++++..++ ..+++.+.+....
T Consensus 245 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 314 (392)
T 2z9v_A 245 PFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGV--------- 314 (392)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTC---------
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCC---------
Confidence 11111 12344556665544458889999999999999999887 88876523 3566777764210
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.|.++ |.....+......+.+|+++..+.++++|+++++++|++++.++
T Consensus 315 ------~-------~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 315 ------D-------EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp ------C-------HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ------C-------HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 0 13566777776 65433322112356899996544789999999999999988765
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=188.49 Aligned_cols=260 Identities=14% Similarity=0.052 Sum_probs=169.6
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|.. ++.+|.+++ +.+|+++|+++|++. .+.+|++++++|++|.+.|+++|+++|++||+++++|++|+
T Consensus 115 ~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~ 184 (393)
T 2huf_A 115 RYGAD---VRVVKSKVG--QSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVAS 184 (393)
T ss_dssp HTTCE---EEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTT
T ss_pred HcCCe---eEEEeCCCC--CCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccc
Confidence 35665 899999864 489999999999862 14478888999999999999999999999999999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhcc---CCccccccccccccccC-CCCcee
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST---NPEYLKNKATESKQVVD-YKDWQI 160 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~-~~~~~~ 160 (310)
.+..+.+. .. .++|++++++|||+++|.|+|+++++ +..+...... ..+|........ ..+. ......
T Consensus 185 ~~~~~~~~-----~~-~~~d~~~~s~sK~l~g~~G~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (393)
T 2huf_A 185 LGGAPMFM-----DR-WEIDAMYTGSQKVLGAPPGITPVSFS-HRAVERYKRRNTKVKVYYWDMSLVG-DYWGCFGRPRI 256 (393)
T ss_dssp BTTBCCCT-----TT-TTCSEEECCSSSTTCCCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHH-HHTTCSSSCCC
T ss_pred cCCCCcch-----hh-cCccEEEECCCcccccCCCeEEEEEC-HHHHHHHhhcCCCCceEEEchHHHH-hhhccccccCC
Confidence 66543321 11 14899999999999988899998886 4343332221 112211100000 0000 000001
Q ss_pred ccC-CCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--Cc-eEEEEEEcCCcchhhhhhhh
Q 046506 161 TLS-RRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HF-AVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 161 ~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~-~~v~~~~~~~~~~~~~~~~~ 235 (310)
..+ ... ...++.++++.+...+++++.++..++++++.+.|.++ ++++..++ .. .++.+.+....
T Consensus 257 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 326 (393)
T 2huf_A 257 YHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGV--------- 326 (393)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTC---------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCC---------
Confidence 111 111 12334445655544468888999999999999999987 88776443 23 36667664210
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 236 ENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.|.++ |. .+.+.. ....+.+|++++.+.++++++++++++|+++++.+.+
T Consensus 327 ------~-------~~~~~~~L~~~~gi-~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 327 ------D-------WLKAAQYAMKTYLV-EISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp ------C-------HHHHHHHHHHHHCE-ECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ------C-------HHHHHHHHHHhCCE-EEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 0 13566667654 64 443221 1235689999755557899999999999999887643
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=180.72 Aligned_cols=258 Identities=10% Similarity=0.059 Sum_probs=168.5
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|+. ++.+|.+++ +.+|+++|+++|++.++ +.++++++++|++|.+.|+++|+++|++||+++++|++|
T Consensus 100 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~~~----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~ 170 (366)
T 1m32_A 100 GLMGIA---HHAYDCGEV--ARPDVQAIDAILNADPT----ISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMS 170 (366)
T ss_dssp HHHTCC---EEEEECCTT--SCCCHHHHHHHHHHCTT----CCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHhCCc---eEEEeCCCC--CCCCHHHHHHHHhcCCC----eEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCc
Confidence 445776 999999864 47999999999986421 447778888899999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+..+.+. .. .++|+++.|+|||+++|.|+|++++++. .+........++.........+. .........+
T Consensus 171 ~~~~~~~~~-----~~-~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 242 (366)
T 1m32_A 171 SFGGIPMDI-----AA-LHIDYLISSANKCIQGVPGFAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCM-EDNHGKWRFT 242 (366)
T ss_dssp TTTTSCCCT-----TT-TTCSEEEEESSSTTCCCSSEEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHH-HHTTTCCSSC
T ss_pred cccCcCccc-----cc-cCccEEEecCcccccCCCceEEEEECHH-HHHhhcCCCCCccccHHHHHhhh-cccCCCCCCC
Confidence 866543321 11 1489999999999988999999988754 33221111111111000000000 0000000011
Q ss_pred CC-cchHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCce-EEEEEEcCC-cchhhhhhhhcc
Q 046506 164 RR-FRSLKLWFVLRNYGVAN-LRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFA-VVCFRVSPS-AVMDKLKTKYEN 237 (310)
Q Consensus 164 ~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~-~v~~~~~~~-~~~~~~~~~~~~ 237 (310)
.. ....++.++++.+...+ ++++.++..++++++.+.|+++ ++++..+ +..+ ++.+.+... ..
T Consensus 243 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 311 (366)
T 1m32_A 243 SPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQY---------- 311 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTC----------
T ss_pred CCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCC----------
Confidence 11 12234455665554444 7889999999999999999987 7877644 2344 677776530 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+ ..++.+.|.++| +.+.+....+.+.+|++++ ..++++|+++++++|++++.
T Consensus 312 ----~-------~~~~~~~l~~~g-i~v~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 312 ----R-------FSEFYRRLKEQG-FVIYPGKVSQSDCFRIGNI-GEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ----C-------HHHHHHHHHHTT-EECEECCCSSSCEEEEECC-SSCCHHHHHHHHHHHHHHCT
T ss_pred ----C-------HHHHHHHHHHCC-EEEECCcCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 0 135677777776 4444432224578999966 56899999999999988754
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=183.11 Aligned_cols=257 Identities=10% Similarity=0.059 Sum_probs=171.2
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.+|.++ ++.+|+++|+++|++. +.+|++++++|++|.+.|+++|+++|++||+++++|++|+
T Consensus 141 ~~g~~---~~~v~~~~--~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 209 (420)
T 1t3i_A 141 KTGAV---LKFVQLDE--QESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQS 209 (420)
T ss_dssp HHCCE---EEEECBCT--TSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred hcCcE---EEEeccCC--CCCcCHHHHHHhhCCC------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhc
Confidence 45666 88999985 3589999999999653 5688899999999999999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccc-ccccCCCCceeccC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATES-KQVVDYKDWQITLS 163 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~ 163 (310)
.+..+.+. .. . ++|++++|+||. ++|.|+|++++++ ..+.................. ...+......++.+
T Consensus 210 ~~~~~~~~-~~----~-~~di~~~s~sK~-~~~~g~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (420)
T 1t3i_A 210 APHYPLDV-QL----I-DCDWLVASGHKM-CAPTGIGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAG 281 (420)
T ss_dssp TTTSCCCH-HH----H-TCSEEEEEGGGT-TSCTTCEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCS
T ss_pred cCCccCch-hh----c-CCCEEEEehhhh-cCCCceEEEEEch-HHHhhcCceecCCCccccccccccCCCCchhhccCC
Confidence 77654321 11 1 489999999995 5677888888764 343332111100000000000 00000001112222
Q ss_pred CC-c-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----CceEEEEEEcCCcchhhhhhhhc
Q 046506 164 RR-F-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----HFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 164 ~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.+ . ..+++.++++.+...+++++.++..++++++.+.|++++++++..+. ..+++.|.+.+.+
T Consensus 282 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------- 351 (420)
T 1t3i_A 282 TPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH---------- 351 (420)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC----------
T ss_pred CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCC----------
Confidence 22 1 12333345665554567889999999999999999998899988654 3678888765311
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------ECC-EeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV--------LGG-IYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~~-~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
..++.+.|.+.|. .+.+.. ..+ .+++|+|++ ..++++|+++++++|+++++.++
T Consensus 352 -------------~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~g~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 352 -------------ASDVATMVDQDGI-AIRSGHHCTQPLHRLFDASGSARASLY-FYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp -------------HHHHHHHHHTTTE-ECBCSCTTCHHHHHHTTCCCCEEEECC-TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred -------------HHHHHHHHHHCCe-EEeeccccchHHHHhcCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 1346666767764 443321 112 578999966 57899999999999999987764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=182.62 Aligned_cols=252 Identities=11% Similarity=0.011 Sum_probs=166.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. ++.++.+++ +.+|+++|++++++. +.++++++++|++|.+.|+++|+++|++||+++++|++|
T Consensus 115 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~~~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~ 183 (376)
T 3f0h_A 115 EIHEIP---YVALKLEHG--KKLTKEKLYEYDNQN------FTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVS 183 (376)
T ss_dssp HHTTCC---EEEEECCTT--CCCCHHHHHTTTTSC------CCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCc---eEEEeCCCC--CCCCHHHHHHhhccC------ceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCc
Confidence 344665 899999863 589999999987543 457888888999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccC-CCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVD-YKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~-~~~~~~~ 161 (310)
+.+....+... .++|++++++||++++|.|+|+++++++ .+...... .+.+...... ... .......
T Consensus 184 ~~~~~~~~~~~------~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 252 (376)
T 3f0h_A 184 AFLADPFNMNE------CGADVMITGSQKVLACPPGISVIVLAPR-GVERVEKSKVRTMYFDLKD----ALKNQERGQTP 252 (376)
T ss_dssp TTTTSCCCHHH------HTCSEEEEETTTTTCCCSSCEEEEECHH-HHHHHHTCCCCCSTTCHHH----HHHHHTTTCCS
T ss_pred cccCccccccc------cCccEEEecCcccccCCCceEEEEECHH-HHHHhhcCCCCceeecHHH----HHhhcccCCCC
Confidence 87766543211 1489999999999998889999877654 33332211 1111110000 000 0000000
Q ss_pred cCCCc-chHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc-eEEEEEEcCCcchhhhhhhhccc
Q 046506 162 LSRRF-RSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF-AVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 162 ~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
.+... ..+++.+++..+... +++++.++..++++++.+.|.++ ++++..+... .++.+...+.+
T Consensus 253 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~------------ 319 (376)
T 3f0h_A 253 FTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTAN------------ 319 (376)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSSC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCCC------------
Confidence 01011 114455666666555 68999999999999999999987 6877654333 33444432211
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.|.+++.+.+.+.. ..+.+++|+|++ ..+|++|+++++++|+++++
T Consensus 320 -----------~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~-~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 320 -----------AYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHI-GALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp -----------HHHHHHHHHHHSSEECEECCGGGTTTCEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCEEEecCccccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 14577778777334444331 123568999966 56999999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=184.66 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=174.0
Q ss_pred CcceecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCc-ccccCChHHHHHHHHHhCcEEE
Q 046506 1 KAAQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTA-ITAVDTLKPLCDVAKQFGIWVH 78 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~-~G~~~pl~~I~~l~~~~g~~l~ 78 (310)
||+.+.|+. .++|++..+ +.+.+|+++||++|.+... ..+.++++..++. .+.++||++|+++||+||+++|
T Consensus 177 kAliL~Gl~---Pv~V~p~~d~~~~~id~e~le~aI~e~ga---~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpll 250 (501)
T 3hl2_A 177 KSMITAGFE---PVVIENVLEGDELRTDLKAVEAKVQELGP---DCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHI 250 (501)
T ss_dssp HHHHHTTCE---EEEECEEEETTEEEECHHHHHHHHHHHCG---GGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHcCCe---EEEEeeeecccccCCCHHHHHHHHHhcCC---CcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEE
Confidence 456778888 888877321 2578999999999998621 1334444444433 4577999999999999999999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
||+|||+...+..........++.+|+++.|+||++..|.|+++++.++++.+.+... .|....
T Consensus 251 VDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yPGr~------------- 314 (501)
T 3hl2_A 251 VNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYPGRA------------- 314 (501)
T ss_dssp EECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSCSCB-------------
T ss_pred EeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHH---hCCCCC-------------
Confidence 9999988765543321111112249999999999999999999998888876654322 221100
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceE-EEEEEcCCcchhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAV-VCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~-v~~~~~~~~~~~~~~~~ 234 (310)
..+.++.+|+++..+|.++|.++++++.+++++|++.|+++. |-+++..+..+| +++.+....
T Consensus 315 -----S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~-------- 381 (501)
T 3hl2_A 315 -----SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLD-------- 381 (501)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSC--------
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccc--------
Confidence 124678899999999999999999999999999999998753 456664443322 233333211
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCc---EEEEEe--------EEC---------CEeEEEEEccCCCCCHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGK---AYMTHA--------VLG---------GIYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~---~~~~~~--------~~~---------~~~~iRis~~~~~~t~edi~~li 294 (310)
.+ . ......+...|...+. -.+.+. ... ....+=++ .....+++|||.|+
T Consensus 382 --~~---~----~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a-~aiG~~~~~v~~~~ 451 (501)
T 3hl2_A 382 --EH---R----DKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAA-SAIGMKMQDVDLFI 451 (501)
T ss_dssp --TT---T----SCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEE-CCTTCCHHHHHHHH
T ss_pred --cc---c----cccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHH-HHcCCCHHHHHHHH
Confidence 00 0 0011234444444332 122211 111 13456566 55789999999999
Q ss_pred HHHHHHHHHHhhcc
Q 046506 295 TVVQEHLEALLSAS 308 (310)
Q Consensus 295 ~~l~~~~~~~~~~~ 308 (310)
+.|.+...+++++.
T Consensus 452 ~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 452 KRLDRCLKAVRKER 465 (501)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998886543
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=179.40 Aligned_cols=254 Identities=9% Similarity=0.056 Sum_probs=165.6
Q ss_pred EEEEecCCCC------C-cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecc
Q 046506 13 FRAIKTTKSS------S-YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 13 v~~v~~~~~~------~-~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a 82 (310)
+++++.++.+ . ..+|+++|+++|++.. +.+|++++++|.+|.+.| +++|+++|++||+++++|++
T Consensus 102 ~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~ 176 (379)
T 3ke3_A 102 STVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK-----SAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176 (379)
T ss_dssp EEEEECEESSCCSSCCCEECCCHHHHHHHHHHHT-----CSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred eEEEeccccccccccCCCCCCCHHHHHHHHhhcC-----CcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 6777765311 1 2589999999996531 447888999999999999 99999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhc-cCCcccccccc--ccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS-TNPEYLKNKAT--ESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~-~~~~y~~~~~~--~~~~~~~~~~~~ 159 (310)
|+ +..+.+... .++|++++++|||+++|.|+|+++++++ .+..... ...++...... ...+........
T Consensus 177 ~~-g~~~~~~~~------~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 248 (379)
T 3ke3_A 177 AS-GCVWLDMKE------LGIDVLISAPQKGWSSTPCAGLVMLSAA-AIKKVESTESNCFSLDLKQWLTIMRAYENGGHA 248 (379)
T ss_dssp TC-TTCCCCHHH------HTCSEEEECTTTTTCSCCCEEEEEECHH-HHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCC
T ss_pred cc-CCccccccc------cCCCEEEecchhhcCCCCceEEEEECHH-HHHhhhcCCCCceeecHHHHHHHHHhhhccCCC
Confidence 98 655443221 1589999999999999999999998765 3333222 11222211000 000000000000
Q ss_pred eccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
+.++.+ ....++.++++.+..++++++.++..++++++++.|.++ |++++.++ ..+++.....+.
T Consensus 249 ~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~----------- 316 (379)
T 3ke3_A 249 YHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER----------- 316 (379)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-----------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-----------
Confidence 011111 123455567776666678999999999999999999987 88876543 244443322221
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.. ....+.|.+.|.+ +.+.. ..+.+.+|+|++ .++|++||++++++|+++++++.
T Consensus 317 ----------~~--~~~~~~L~~~Gi~-v~~g~~~~~~~~~~~~~lRis~~-~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 317 ----------DD--MHKGSAFAEAGLQ-IAAGVPLKVGEPDNFKTFRLGLF-GLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ----------HH--HHSSHHHHHTTCC-CEECCCCSSCCCTTCCEEEEECC-SHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----------cc--hHHHHHHHHCCeE-EeCCccccccccCcCCEEEEeCC-cCCCHHHHHHHHHHHHHHHHHhc
Confidence 00 1124456667754 33332 123678999966 57899999999999999988764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=191.50 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=161.0
Q ss_pred EEEEecC--CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc-CChHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTT--KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-DTLKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~--~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~pl~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
|.++|++ +.+ ..+++++++++|+++ +.+|++++++|.+|++ +||++|+ +|+++|||++|+.+..+
T Consensus 140 v~~v~~~~~~~G-~~~~~~~~~~~l~~~------t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~p 207 (386)
T 3qm2_A 140 PQIIDAKITVDG-KRAVKPMREWQLSDN------AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAP 207 (386)
T ss_dssp EEEEECEEEETT-EEEECCGGGCCCCTT------CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSC
T ss_pred eEEEecCcccCC-CCCCchHHHhhcCCC------CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCC
Confidence 8899988 433 137888888888765 3478999999999995 9999996 89999999999999988
Q ss_pred ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cc
Q 046506 90 CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FR 167 (310)
Q Consensus 90 ~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~ 167 (310)
.+... .|++++++|||++ |.|+|+++++++. +.+..+..|.++..... . +.....+++ +.
T Consensus 208 idv~~--------~~~~~~s~hK~lG-P~G~g~l~v~~~~-~~~~~~~~p~~~~~~~~-----~---~~~~~~gTp~v~~ 269 (386)
T 3qm2_A 208 LDVSR--------YGVIYAGAQKNIG-PAGLTLVIVREDL-LGKAHESCPSILDYTVL-----N---DNDSMFNTPPTFA 269 (386)
T ss_dssp CCGGG--------CSEEEEETTTTTC-CTTEEEEEEEGGG-CSCCCTTSCGGGCHHHH-----H---HC-------CCSH
T ss_pred CCccc--------cCEEEEecccccC-CCccEEEEECHHH-HhhhcccCCcHHHHHHH-----h---hcCCCCCCCcHHH
Confidence 87432 4578899999995 9999999999773 22221222222110000 0 000001111 24
Q ss_pred hHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCe-EEecCC--C-ceEEEEEEcCCcchhhhhhhhccccchh
Q 046506 168 SLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRF-EVVFPR--H-FAVVCFRVSPSAVMDKLKTKYENSLLSE 242 (310)
Q Consensus 168 ~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
.+++.++++.+... |++++.++..++++++++.|.++ ++ ....++ + ..+++|.+++...
T Consensus 270 i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~~--------------- 333 (386)
T 3qm2_A 270 WYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNTL--------------- 333 (386)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGGG---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCccc---------------
Confidence 56777888888777 89999999999999999999987 55 332222 2 3588999875211
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 243 EERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 243 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..+...|.+.|.....+ ....+.+|+|+. .++|+||||+|+++|+++.++
T Consensus 334 ----~---~~~~~~L~~~gI~~~~g--~~~~~~iRiS~~-~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 334 ----D---KVFLEESFAAGLHALKG--HRVVGGMRASIY-NAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ----H---HHHHHHHHHTTEECCBC--CTTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ----c---HHHHHHHHHCCCEEeCC--CCCcCeEEEEcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 1 24455566676432211 112245999976 579999999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=177.36 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=166.5
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. ++.+|.+++ +.+|+++|+++|++. +.+|++++++|++|.+.|+++|+++|++||++ ++|++|+.
T Consensus 111 ~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~ 178 (382)
T 4eb5_A 111 QGFE---VEYIPVGKY--GEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASV 178 (382)
T ss_dssp TTCE---EEEECBCTT--SCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTB
T ss_pred CCcE---EEEeccCCC--CccCHHHHHHHhcCC------CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhc
Confidence 4665 899999864 589999999999653 55888899999999999999999999999999 99999986
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC-
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR- 164 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~- 164 (310)
+..+.+. .. . ++|++++|+||+ ++|.|+|+++++++..+. .+...... ......+.
T Consensus 179 g~~~~~~-~~----~-~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~-------~~~~~~~~---------~~~~~~~~~ 235 (382)
T 4eb5_A 179 GQIEVDV-EK----I-GADMLTISSNDI-YGPKGVGALWIRKEAKLQ-------PVILGGGQ---------ENGLRSGSE 235 (382)
T ss_dssp TTBCCCH-HH----H-TCSEEEEETGGG-TCCSSCEEEEEETTCCCC-------CSSCSSCT---------GGGTSCSCC
T ss_pred CCcccCc-cc----c-CCCEEEeehHHh-cCCCceEEEEEccccccC-------ceecCCCc---------cccccCCCc
Confidence 5543321 11 1 489999999998 557789999887662111 11111000 00011111
Q ss_pred C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcchhhhhhhhccccc
Q 046506 165 R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
. ....++.++++.+ .++++++.++..++++++.+.|+++|++++..++. .+++.|.+.+.+
T Consensus 236 ~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 300 (382)
T 4eb5_A 236 NVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIE-------------- 300 (382)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSC--------------
T ss_pred cHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcC--------------
Confidence 1 1223444555544 34688899999999999999999988998875432 557777775321
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------------E-----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAV--------------L-----GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------------~-----~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+.|.....+.. . .+.+.+|+++. +.++++|+++++++|++++
T Consensus 301 ---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 370 (382)
T 4eb5_A 301 ---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp ---------HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 13456666666653322110 0 01368999955 5789999999999999999
Q ss_pred HHHhh
Q 046506 302 EALLS 306 (310)
Q Consensus 302 ~~~~~ 306 (310)
..+++
T Consensus 371 ~~~~~ 375 (382)
T 4eb5_A 371 ERLRS 375 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-22 Score=181.57 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=169.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|.. ++.+|.+++ +.+|+++|+++|++. + +.+|++++++|++|.+.|+++|+++|++||+++++|++
T Consensus 128 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~-~----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea 197 (393)
T 1vjo_A 128 AGRYGAD---VRTISKPWG--EVFSLEELRTALETH-R----PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTV 197 (393)
T ss_dssp HHHTTCE---EEEEECCTT--CCCCHHHHHHHHHHH-C----CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECT
T ss_pred HHHcCCc---eEEEecCCC--CCCCHHHHHHHHhhC-C----ceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECC
Confidence 3445666 899999864 489999999999873 1 44788889999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC---CccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN---PEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+.+..+.+. .. .++|+++.++||++++|.++|+++++++ .+....... .++...... ..+... ...
T Consensus 198 ~~~g~~~~~~-----~~-~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~ 267 (393)
T 1vjo_A 198 TSLGGVPIFL-----DA-WGVDLAYSCSQKGLGCSPGASPFTMSSR-AIEKLQRRRTKVANWYLDMNL-LGKYWG--SER 267 (393)
T ss_dssp TTTTTSCCCT-----TT-TTCSEEECCSSSTTCSCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHH-HHHHHS--TTC
T ss_pred ccccCcCCcc-----cc-cCccEEEEcCcccccCCCceEEEEECHH-HHHHHhccCCCCCceecCcHh-hhhhhc--cCC
Confidence 9855433221 11 2589999999999999999999988654 333221110 111110000 000000 001
Q ss_pred ecc-CCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcchhhhhhh
Q 046506 160 ITL-SRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 160 ~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~ 234 (310)
... +.. ....++.++++.+...+++++.++..++++++.+.|+++ ++++..+.. .+++.+.++...
T Consensus 268 ~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-------- 338 (393)
T 1vjo_A 268 VYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV-------- 338 (393)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC--------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCCC--------
Confidence 111 111 223445566665544567889999999999999999987 887764432 356677664210
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+ ..++.+.|.++ |.....+......+++|+|+..+.+++++++.++++|++++
T Consensus 339 -------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 339 -------D-------GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp -------C-------HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred -------C-------HHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 0 13567777776 65433322222357899996555678889999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=184.88 Aligned_cols=239 Identities=12% Similarity=0.084 Sum_probs=162.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++++++++++.+.++++. + |+++ +.+|++++++|.+|++.|. +++ +|+++|||++|
T Consensus 112 ~~~G~~---v~~~~~~~~g~~~~~~~~-~--l~~~------t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q 173 (361)
T 3m5u_A 112 QILGVN---VKTVASSEESNFDHIPRV-E--FSDN------ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASS 173 (361)
T ss_dssp HHTTCC---EEEEEECTTTTSCSCCCC-C--CCTT------SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGG
T ss_pred HHcCCc---eEEEecccCcCCCcCChh-h--cCCC------CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEccc
Confidence 335776 999999986422256666 4 6554 3488899999999998662 344 49999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhc-cCCccccccccccccccCCCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS-TNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
+.+..+.+.. .+|++++++|||++ |.|+|+++++++. +.+..+ ..|.++...... +.....
T Consensus 174 ~~g~~~id~~--------~~d~~~~s~~K~~g-p~G~g~l~~~~~~-~~~~~~~~~p~~~~~~~~~--------~~~~~~ 235 (361)
T 3m5u_A 174 DFFSRKVDFS--------NIALFYGGVQKNAG-ISGLSCIFIRKDM-LERSKNKQIPSMLNYLTHA--------ENQSLF 235 (361)
T ss_dssp GTTSSCCCCT--------TEEEEEEETTTTSS-CTTCEEEEEEHHH-HHHHHTCCCCGGGCHHHHH--------HTTTCS
T ss_pred ccCCCCCCcc--------cCCEEEEechhccC-CCccEEEEEcHHH-HhhhcCCCCCceeehHHHh--------hcCCCC
Confidence 9999887632 37999999999995 9999999998763 333322 223332211000 000001
Q ss_pred CCC--cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCe-EEecCC--C-ceEEEEEEcC-Ccchhhhhhh
Q 046506 163 SRR--FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRF-EVVFPR--H-FAVVCFRVSP-SAVMDKLKTK 234 (310)
Q Consensus 163 ~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~--~-~~~v~~~~~~-~~~~~~~~~~ 234 (310)
+++ +..+++.++++.+... |++++.++..++++++++.|++++++ .+..++ + ..+++|.+++ ...
T Consensus 236 ~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~------- 308 (361)
T 3m5u_A 236 NTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDL------- 308 (361)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTTH-------
T ss_pred CCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchhh-------
Confidence 122 2346677788877667 79999999999999999999999776 554332 2 3588999875 211
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ .++...|.+.|. .+... ....+.+|+|++ .++|++||++++++|+++.++
T Consensus 309 ------------~---~~~~~~L~~~gI-~~~~g-~~~~g~iRiS~~-~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 309 ------------E---PLFVKEAEEAGM-IGLKG-HRILGGIRASIY-NALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ------------H---HHHHHHHHHTTE-ECCBC-CTTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------h---HHHHHHHHHCCC-EEecC-CCccCeEEEEcc-CCCCHHHHHHHHHHHHHHHHh
Confidence 1 245566767764 33221 112256999977 579999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=175.87 Aligned_cols=246 Identities=14% Similarity=0.046 Sum_probs=165.6
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeeccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDAAY 83 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~a~ 83 (310)
.|.. ++.+|.+++ +.+|+++|++ + .+.+|++++++|++|.+.|+++|.++|++| |+++++|++|
T Consensus 97 ~g~~---~~~v~~~~~--~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~ 162 (352)
T 1iug_A 97 AGLV---VERLDYPYG--DTPRPEDVAK---E------GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVT 162 (352)
T ss_dssp TTCE---EEEEECCTT--CCCCTTTSCC---S------SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred cCCc---eEEEeCCCC--CCCCHHHHhc---c------CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCc
Confidence 5665 899999864 4799999887 2 145788899999999999999999999999 9999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccC-CCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD-YKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~ 162 (310)
+.+..+.+. . .. ++|++++++|||+++|.|+|+++++++ .+... .. ..+..... .... .......+
T Consensus 163 ~~~~~~~~~-~----~~-~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~-~~-~~~~~~~~----~~~~~~~~~~~~~ 229 (352)
T 1iug_A 163 SLLVGEVAL-E----AM-GVDAAASGSQKGLMCPPGLGFVALSPR-ALERL-KP-RGYYLDLA----RELKAQKEGESAW 229 (352)
T ss_dssp TBTTBCCCS-G----GG-TCSEEEEESSSTTCCCSCEEEEEECHH-HHHTC-CC-CSSTTCHH----HHHHHHTTTCCSS
T ss_pred cccCcceec-c----cc-CeeEEEecCcccccCCCceeEEEECHH-HHHHh-hC-CCceeeHH----HHHhhcccCCCCC
Confidence 866544331 1 11 489999999999999999999988654 33221 11 01100000 0000 00000011
Q ss_pred CCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhhhccccc
Q 046506 163 SRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 163 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+... ...++.++++.+... ++++.++..++++++.+.|+++ ++++..+. ..+++.|.+....
T Consensus 230 ~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-------------- 293 (352)
T 1iug_A 230 TPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-------------- 293 (352)
T ss_dssp CCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC--------------
T ss_pred CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC--------------
Confidence 1111 123444556554444 7888999999999999999987 89887543 4567777765210
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.|.++|. .+.+.. ..+.+.+|++++ ..++++|+++++++|+++++++
T Consensus 294 -~-------~~~~~~~l~~~gi-~v~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 294 -P-------YARVKEAFAQRGA-VIAGGQGPLKGKVFRLSLM-GAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp -C-------HHHHHHHHHTTTE-ECEECCGGGTTTEEEECCC-SSCCHHHHHHHHHHHHHHHHHH
T ss_pred -C-------HHHHHHHHHHCCE-EEEeCCCccCCCEEEEEcc-ccCCHHHHHHHHHHHHHHHHHh
Confidence 0 1357777777764 444322 113468999966 4688999999999999988766
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=179.45 Aligned_cols=255 Identities=13% Similarity=0.140 Sum_probs=169.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHH----HhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAK----QFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~----~~g~~l~v 79 (310)
+..|.. ++.+|.++..++.+|+++|+++|++. +.+|++++++|++|.+.|+++|+++|+ +||+++++
T Consensus 123 ~~~g~~---~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~ 193 (390)
T 1elu_A 123 ARFGIT---YRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLV 193 (390)
T ss_dssp HHHCCE---EEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEE
T ss_pred HHhCcE---EEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEE
Confidence 345666 88999873124589999999999653 558888999999999999999999999 99999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC--
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD-- 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~-- 157 (310)
|++|+.+..+.+. .. .++|+++.|+|||+++|.|+|+++++++ .+.........+............++.+
T Consensus 194 Dea~~~g~~~~~~-----~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 266 (390)
T 1elu_A 194 DGAQSAGSLPLDF-----SR-LEVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGG 266 (390)
T ss_dssp ECTTTBTTBCCCT-----TT-SCCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGG
T ss_pred EcccccCCcCCCh-----hh-cCCCEEEccccccccCCCceEEEEECHH-hHhhcCCccccCCcccccccCcccccccch
Confidence 9999866543321 11 2589999999999999999999998754 3322211100000000000000000000
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhh
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVAN-LRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~ 232 (310)
..+..+.. ....++.++++.+...+ ++++.++..++++++.+.|++++++++..+ +..+++.|.+....
T Consensus 267 ~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 340 (390)
T 1elu_A 267 KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL------ 340 (390)
T ss_dssp GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS------
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCC------
Confidence 01111211 12234455666554444 888999999999999999998889998753 35778888774210
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++.+.|.+.|. .+.+.. +.+++|+|++ ..++++|+++++++|+++
T Consensus 341 ---------~-------~~~~~~~l~~~gi-~v~~~~--~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 341 ---------G-------HRAIVQKLEEQRI-YLRTIA--DPDCIRACCH-YITDEEEINHLLARLADF 388 (390)
T ss_dssp ---------C-------HHHHHHHHHHTTE-ECEEET--TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred ---------C-------HHHHHHHHHHCCE-EEEecC--CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence 0 1356677767764 443322 3468999965 579999999999998754
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=178.88 Aligned_cols=254 Identities=13% Similarity=0.085 Sum_probs=166.3
Q ss_pred eecCCCCCCEEEEec-CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEee
Q 046506 4 QIVGIDVKNFRAIKT-TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~-~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD 80 (310)
+..|.. ++.+|. ++ ++.+|+++|+++|++. .+.+|++++.+|++|.+.|+++|+++|++| |+++++|
T Consensus 106 ~~~g~~---~~~v~~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D 175 (385)
T 2bkw_A 106 RSYGAQ---VDVVRPLKI--GESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVD 175 (385)
T ss_dssp HHTTCE---EEEECCSST--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEE
T ss_pred HHcCCc---eEEEecCCC--CCCCCHHHHHHHHhcC-----CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEE
Confidence 345665 899998 65 3589999999999762 144788899999999999999999999999 9999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhc-----cCCcccccccccccccc-C
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS-----TNPEYLKNKATESKQVV-D 154 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~-----~~~~y~~~~~~~~~~~~-~ 154 (310)
++|+.+..+.+. ... ++|++++++|||+++|.|+|+++++++ .+.+.+. ....|...... ..... .
T Consensus 176 ~a~~~~~~~~~~-----~~~-~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 247 (385)
T 2bkw_A 176 AVCSIGCEEFEF-----DEW-GVDFALTASQKAIGAPAGLSISLCSSR-FMDYALNDSKNGHVHGYFSSLRR-WTPIMEN 247 (385)
T ss_dssp CTTTTTTSCCCT-----TTT-TCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHTCHHHHCCCSCSTTCHHH-HHHHHHH
T ss_pred CccccCCccccc-----ccc-CceEEEecCccccccCCcceEEEEcHH-HHHHHHhhccCCCCCceeecHHH-HhhHHHh
Confidence 999866544321 112 489999999999999999999988654 3331221 00111110000 00000 0
Q ss_pred CCC--ceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-cCCCCeEEecCC-----CceEEEEEEcCC
Q 046506 155 YKD--WQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLV-GSDKRFEVVFPR-----HFAVVCFRVSPS 225 (310)
Q Consensus 155 ~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L-~~~~~~~v~~~~-----~~~~v~~~~~~~ 225 (310)
+.. ....++.. ...+++.++++.+...+++++.++..++++++.+.| +++ ++++..+. ..+++++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~- 325 (385)
T 2bkw_A 248 YEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD- 325 (385)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC-
T ss_pred hhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC-
Confidence 000 00001111 122344456655544457888999999999999999 887 88887421 35677776642
Q ss_pred cchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCEeEEEEE-cc-C-CCCCHHHHHHHHHHHHHH
Q 046506 226 AVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL--GGIYAIRFA-AG-A-TLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~iRis-~~-~-~~~t~edi~~li~~l~~~ 300 (310)
..++.+.|.+.|. .+.+... ...+.+|+| +. + +.++++|+++++++|+++
T Consensus 326 ------------------------~~~~~~~l~~~gi-~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 326 ------------------------PPDVIAFLKSHGV-VIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp ------------------------HHHHHHHHHHTTE-ECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHCCe-EEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHH
Confidence 1356677766664 4433221 135789999 44 2 247999999999999887
Q ss_pred HH
Q 046506 301 LE 302 (310)
Q Consensus 301 ~~ 302 (310)
++
T Consensus 381 ~~ 382 (385)
T 2bkw_A 381 LQ 382 (385)
T ss_dssp TT
T ss_pred HH
Confidence 54
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=180.51 Aligned_cols=263 Identities=12% Similarity=0.029 Sum_probs=169.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ +.+|+++|+++|++. + +.+|++++++|++|.+.|+++|+++|++||+++++|++
T Consensus 112 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~l~~~-~----~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea 181 (396)
T 2ch1_A 112 SERYGAD---VRTIEGPPD--RPFSLETLARAIELH-Q----PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAV 181 (396)
T ss_dssp HHHTTCE---EEEEECCTT--SCCCHHHHHHHHHHH-C----CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECT
T ss_pred HHHcCCc---eEEecCCCC--CCCCHHHHHHHHHhC-C----CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcc
Confidence 3456776 899999864 589999999999863 1 34788889999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhcc---CCcccccccccccccc-CCCCc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST---NPEYLKNKATESKQVV-DYKDW 158 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~---~~~y~~~~~~~~~~~~-~~~~~ 158 (310)
|+.+..+.+ ... .++|+++.++||++++|.|+|++++++. .+...... ...+............ .....
T Consensus 182 ~~~g~~~~~-----~~~-~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
T 2ch1_A 182 ASLCGVPFY-----MDK-WEIDAVYTGAQKVLGAPPGITPISISPK-ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPK 254 (396)
T ss_dssp TTBTTBCCC-----TTT-TTCCEEECCCC-CCCCCSSCEEEEECHH-HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCC
T ss_pred ccccCCccc-----hhh-cCcCEEEEcCCccccCCCCeEEEEECHH-HHHhhhhccCcccceEechHHHHHhhhhhcccC
Confidence 986544332 111 1479999999999999999998888653 33322111 0111111000000000 00000
Q ss_pred eeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC----ceEEEEEEcCCcchhhhhh
Q 046506 159 QITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH----FAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 159 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~----~~~v~~~~~~~~~~~~~~~ 233 (310)
...++.+. ...++.++++.+..++++++.++..++++++.+.|+++ |++++.+.. ..++.+.+....
T Consensus 255 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------- 326 (396)
T 2ch1_A 255 RYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV------- 326 (396)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-------
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCC-------
Confidence 01111111 22444556665545668889999999999999999887 887764332 136677664210
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 234 KYENSLLSEEERINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.|.++ |.....+......+.+|++++.+.++++|+++++++|+++++++.
T Consensus 327 --------~-------~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 327 --------D-------WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp --------C-------HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred --------C-------HHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 0 13566667654 653322111123568999975556799999999999999988764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=171.57 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=163.8
Q ss_pred CCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccc
Q 046506 7 GIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGS 86 (310)
Q Consensus 7 g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~ 86 (310)
|+. ++.+|.+++ +.+|+++|+++|++. +.++++++++|++|.+.|+++|+++|++||+++++|++|+.+
T Consensus 137 g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~ 205 (423)
T 3lvm_A 137 GFE---VTYLAPQRN--GIIDLKELEAAMRDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205 (423)
T ss_dssp TCE---EEEECCCTT--SCCCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CCE---EEEeccCCC--CccCHHHHHHhcCCC------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcC
Confidence 665 899999874 589999999999754 568888889999999999999999999999999999999876
Q ss_pred cccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC-C
Q 046506 87 ACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR-R 165 (310)
Q Consensus 87 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (310)
..+.+.. . .++|++++++||+ ++|.|+|+++++++.. .. + . .+...... ...+..+. .
T Consensus 206 ~~~~~~~-----~-~~~di~~~s~sK~-~g~~g~G~~~~~~~~~-~~-~--~-~~~~~~~~---------~~~~~~~~~~ 264 (423)
T 3lvm_A 206 KLPIDLS-----Q-LKVDLMSFSGHKI-YGPKGIGALYVRRKPR-VR-I--E-AQMHGGGH---------ERGMRSGTLP 264 (423)
T ss_dssp TSCCCTT-----T-SCCSEEEEESTTT-TSCSSCEEEEECBTTB-CC-C--C-CSSCSSCT---------TTTTCCSCCC
T ss_pred CCCcChh-----h-cCCCEEEechHHh-cCCCCeEEEEEecccc-CC-C--C-ccccCCcc---------cccccCCCCC
Confidence 6543221 1 1489999999996 5577899998875521 11 1 1 11111100 00001111 1
Q ss_pred -cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcchhhhhhhhccccch
Q 046506 166 -FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
....++.++++.+ ...++++.++..++++++.+.|+++|++++..++. .+++.|.+.+.+
T Consensus 265 ~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 328 (423)
T 3lvm_A 265 VHQIVGMGEAYRIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE--------------- 328 (423)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSC---------------
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCC---------------
Confidence 1223334455444 23478899999999999999999999999886543 457778775432
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEE---------------C-----CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVL---------------G-----GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---------------~-----~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+ +.+.+... . ..+.+|+++. ..++++||++++++|++++
T Consensus 329 --------~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 329 --------GESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp --------HHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 1234444433 22221100 0 0378999966 5789999999999999999
Q ss_pred HHHhh
Q 046506 302 EALLS 306 (310)
Q Consensus 302 ~~~~~ 306 (310)
+++++
T Consensus 397 ~~~~~ 401 (423)
T 3lvm_A 397 GRLRD 401 (423)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 88754
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=173.56 Aligned_cols=240 Identities=12% Similarity=0.071 Sum_probs=160.4
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|.. ++++|.++. ++.+|+++|+++|++. +.+|++++++|++|.+.|+++|+++|+++|+++++|++|+.
T Consensus 137 ~g~~---v~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~ 206 (406)
T 3cai_A 137 YGAK---VKWAEVDIE-TGELPTWQWESLISKS------TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAA 206 (406)
T ss_dssp HBCE---EEEECCCTT-TCCCCGGGHHHHCCTT------EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCCe---EEEEecCcc-cCCcCHHHHHHHhCCC------ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEccccc
Confidence 4665 899998842 3589999999999653 56888999999999999999999999999999999999987
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceE-EEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCC-CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g-~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
+..+.+... . ++|++++|+||+++ |. +| +++++ +..+........ +... . ....+..+.
T Consensus 207 g~~~~~~~~-----~-~~d~~~~s~~K~~g-~~-~G~~~~~~-~~~~~~l~~~~~-~~~~-~---------~~~~~~~~t 266 (406)
T 3cai_A 207 PYRLLDIRE-----T-DADVVTVNAHAWGG-PP-IGAMVFRD-PSVMNSFGSVST-NPYA-T---------GPARLEIGV 266 (406)
T ss_dssp TTCCCCHHH-----H-CCSEEEEEGGGGTS-CS-CEEEEESC-HHHHHTSCCCCS-CTTC-C---------GGGGGCCSC
T ss_pred CCCCCCchh-----c-CCCEEEeehhhhcC-CC-cCeEEEEe-hHHHhhcCCccc-CCCC-C---------ccccccCCC
Confidence 655443211 1 48999999999875 65 77 77665 433322211110 0000 0 000111111
Q ss_pred -Cc-chHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCc
Q 046506 165 -RF-RSLKLWFVLRNYGVA--------------NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSA 226 (310)
Q Consensus 165 -~~-~~~~~~~~l~~~~~~--------------~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~ 226 (310)
.. ...++.++++.+... +++++.++..++++++.+.|+++|++++..+. ..++++|.+.+.+
T Consensus 267 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (406)
T 3cai_A 267 HQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVP 346 (406)
T ss_dssp CCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBC
T ss_pred ccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcC
Confidence 11 112333445443221 47888899999999999999998899887543 3567777765321
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-------E---CCEeEEEEEccCCCCCHHHHHHHHHH
Q 046506 227 VMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV-------L---GGIYAIRFAAGATLTEERHVMVAWTV 296 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------~---~~~~~iRis~~~~~~t~edi~~li~~ 296 (310)
..++.+.|.+.|. .+.+.. . .+...+|+++. ..++++|+++++++
T Consensus 347 -----------------------~~~~~~~L~~~gi-~v~~g~~~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~~~ 401 (406)
T 3cai_A 347 -----------------------ADRVVQRLADNGI-LAIANTGSRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLVRA 401 (406)
T ss_dssp -----------------------HHHHHHHHHHTTE-ECEECCSCHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHCCc-EEecCChHHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHHHH
Confidence 1356667766664 444321 1 12468999966 57899999999999
Q ss_pred HHHH
Q 046506 297 VQEH 300 (310)
Q Consensus 297 l~~~ 300 (310)
|+++
T Consensus 402 l~~~ 405 (406)
T 3cai_A 402 LASL 405 (406)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8753
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=168.93 Aligned_cols=243 Identities=12% Similarity=0.108 Sum_probs=162.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC--cEEEeec
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG--IWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g--~~l~vD~ 81 (310)
+..|.. ++.+|.+++ +.+|+++|+++|++. +.+|++++++|++|.+.|+++|.++|++|| +++++|+
T Consensus 110 ~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~De 178 (384)
T 1eg5_A 110 SMKGFK---VKYVPVDSR--GVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178 (384)
T ss_dssp HHTTCE---EEECCBCTT--SCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred HhcCCE---EEEEccCCC--CccCHHHHHHHhCCC------CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEh
Confidence 345665 889998864 589999999999653 558888899999999999999999999999 9999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+|+.+..+.+ .... ++|++++|+||++ +|.|+|+++++++..+. .++...... .. ...
T Consensus 179 a~~~~~~~~~-----~~~~-~~di~~~s~sK~~-g~~G~G~~~~~~~~~~~-------~~~~~~~~~-------~~-~~~ 236 (384)
T 1eg5_A 179 VQTIGKIPFS-----LEKL-EVDYASFSAHKFH-GPKGVGITYIRKGVPIR-------PLIHGGGQE-------RG-LRS 236 (384)
T ss_dssp TTTTTTSCCC-----CTTT-CCSEEEEEGGGGT-SCTTCEEEEECTTSCCC-------CSBCSSCTT-------TT-TBC
T ss_pred hhhcCCcccC-----chhc-CCCEEEecHHHhc-CCCceEEEEEcCCCccc-------cccccCccc-------cc-ccC
Confidence 9975443222 1122 4899999999985 46678998887552011 111110000 00 001
Q ss_pred cCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhcc
Q 046506 162 LSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
++.. ....++.++++.. .++++++.++..++++++.+.|.+ +++++..++ ....+.|.+.+.+
T Consensus 237 ~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~----------- 303 (384)
T 1eg5_A 237 GTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNIR----------- 303 (384)
T ss_dssp SCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTCC-----------
T ss_pred CCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCCC-----------
Confidence 1111 1223344455442 346788899999999999999998 689887543 2356677665321
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-------------------CEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLG-------------------GIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------------~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
..++.+.|.+.|.....+.... +.+++|+++. ++++++|+++++++|+
T Consensus 304 ------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~ 370 (384)
T 1eg5_A 304 ------------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIE 370 (384)
T ss_dssp ------------HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHH
Confidence 1356667766664332211110 1378999965 5789999999999999
Q ss_pred HHHHHHh
Q 046506 299 EHLEALL 305 (310)
Q Consensus 299 ~~~~~~~ 305 (310)
+++++++
T Consensus 371 ~~~~~~~ 377 (384)
T 1eg5_A 371 EILSFLD 377 (384)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9987764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=170.11 Aligned_cols=234 Identities=15% Similarity=0.130 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeee
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFS 107 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~ 107 (310)
+++|+++|++. +.+|++++++|++|.+.|+++|+++|++||+++++|++|+.+..+.+. .. . ++|+++
T Consensus 155 ~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~----~-~~d~~~ 222 (416)
T 1qz9_A 155 PEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDL-HQ----A-GADYAI 222 (416)
T ss_dssp GGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCH-HH----H-TCSEEE
T ss_pred HHHHHHHhCCC------ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCCh-hh----c-CCCEEE
Confidence 67888888642 568999999999999999999999999999999999999876554331 11 1 489999
Q ss_pred eecccccccccce-EEEEEeCchhHHhhhccCCccccccccccccccCCC----CceeccCC-Cc-chHHHHHHHHHhCH
Q 046506 108 LNAHKWFFTTLDC-CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK----DWQITLSR-RF-RSLKLWFVLRNYGV 180 (310)
Q Consensus 108 ~~~hK~l~~p~g~-g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~-~~-~~~~~~~~l~~~~~ 180 (310)
+|+||+++++.|+ |+++++++ .+.........|...... .....++. ...+..+. .. ..+++.++++.+..
T Consensus 223 ~s~~K~l~~g~~~~g~l~~~~~-~~~~l~~~~~g~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 300 (416)
T 1qz9_A 223 GCTYKYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSRQ-FAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ 300 (416)
T ss_dssp ECSSSTTCCCTTCCCEEEECTT-TTTTSCCSCCCGGGBCTT-SCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT
T ss_pred ecCcccCCCCCCCeEEEEECHH-HHhccCCCccccCccccc-cCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh
Confidence 9999998777777 99988765 222211111111110000 00000000 01111111 11 22445566766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-C--CeEEecCC----CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSD-K--RFEVVFPR----HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNREL 253 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~-~--~~~v~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (310)
++++++.++..++++++.+.|.++ | ++++..+. ..+++++.+.. ..++
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~l 355 (416)
T 1qz9_A 301 TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE-------------------------GYAV 355 (416)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT-------------------------HHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC-------------------------HHHH
Confidence 678889999999999999999885 6 88887543 35666665542 1456
Q ss_pred HHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 254 LESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 254 ~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.|.++|. .+.. .+.+.+|+++++++++++|+++++++|++++.+.
T Consensus 356 ~~~l~~~gi-~~~~---~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 356 IQALIDRGV-IGDY---REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp HHHHHTTTE-ECEE---ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCc-Eecc---CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 777777774 3321 2456899997645799999999999999988653
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-21 Score=179.02 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=163.2
Q ss_pred cceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc-CChHHHHHHHHHhCcEEEee
Q 046506 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-DTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 2 aa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~pl~~I~~l~~~~g~~l~vD 80 (310)
+++..|+. ++.||++++ +.+|+++|+++|+++ +.+|+++++ |.+|.+ +|+++|+++|++||+++|+|
T Consensus 172 ~~~~~G~~---vv~v~~~~~--~~~d~~~L~~~i~~~------t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~D 239 (474)
T 1wyu_B 172 TASMAGYQ---VREIPSGPE--GEVDLEALKRELGPH------VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYD 239 (474)
T ss_dssp HHHHTTCE---EEEECBCTT--SSBCHHHHHHHCSTT------EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEE
T ss_pred HHHHCCCE---EEEecCCCC--CCcCHHHHHHhhCCC------ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEe
Confidence 34567776 999999864 589999999999754 346777765 569998 79999999999999999999
Q ss_pred cccccccc-cChhhhhhhcCCCCCCeeeeeccccccccc-----ceEEEEEeCchhHHhhhccCCcccccccccccc---
Q 046506 81 AAYAGSAC-ICPEFRHFIDGVEGADSFSLNAHKWFFTTL-----DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ--- 151 (310)
Q Consensus 81 ~a~~~~~~-~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-----g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~--- 151 (310)
++|+.+.. ..+. . . .++|++++|+||+|++|. ++|+++++++ .+ +.+.. .+....+..+.-
T Consensus 240 ea~~~~~~g~~~~-~----~-~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~-~~l~~--~~~~~~g~~~~~~~~ 309 (474)
T 1wyu_B 240 GANLNAIMGWARP-G----D-MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPV--PLVERGEEGFYLDFD 309 (474)
T ss_dssp GGGGGGTTTTCCH-H----H-HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCS--CEEEECSSCEEEECC
T ss_pred CchhhhhccCCCc-c----c-CCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HH-HhCCC--CeeeccCCeeEeccc
Confidence 99976553 1111 1 1 148999999999999996 5899988765 33 22211 111000000000
Q ss_pred cc-CCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchh
Q 046506 152 VV-DYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMD 229 (310)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~ 229 (310)
.. ..+.+....+......++++.++.+|.+++++..++..++++++.+.|.++ ++++..++ ..+.+.+.+... .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~-- 385 (474)
T 1wyu_B 310 RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEG-F-- 385 (474)
T ss_dssp CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTT-C--
T ss_pred CcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCC-C--
Confidence 00 000000000111223455566666678889999999999999999999987 88774332 232122333111 0
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
...++.++|.++|... ....+. ..+.+|++++ ..++++++++++++|++++.
T Consensus 386 -------------------~~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 386 -------------------RALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPT-ETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp -------------------CHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHT
T ss_pred -------------------CHHHHHHHHHHCCccc-cccccccccCCEEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 0146777777777642 211111 2468999976 46899999999999998763
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=172.74 Aligned_cols=243 Identities=16% Similarity=0.130 Sum_probs=157.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc-
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA- 82 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a- 82 (310)
+..|+. ++.+|++ + +.+|+++ |+++ +.+|+++++ |++|.+.|+++|+++||++|+++|||..
T Consensus 172 ~~~G~~---v~~v~~~-~--~~~d~~~----i~~~------t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~ 234 (438)
T 1wyu_A 172 EAVGAK---LLTLPLE-G--GRTPLPE----VGEE------VGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADP 234 (438)
T ss_dssp HHTTCE---EEEECCB-T--TBCCCCC----CCTT------EEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCT
T ss_pred HHCCCE---EEEEcCc-C--CccCHHH----hCCC------eEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEech
Confidence 446776 8899873 2 4788776 4332 568888887 9999999999999999999999997754
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeeccc-----ccccccceEEEEEeCchhHHhhhccCCccccccccccccc----c
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHK-----WFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV----V 153 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK-----~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~----~ 153 (310)
++.+....+. . .++|++++++|| |+++| |+|+++++++ .. +.+ +.++.+...+..+. .
T Consensus 235 ~a~g~~~~~~-~------~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~-~~l---~~~~~g~~~~~~~~~~~~~ 301 (438)
T 1wyu_A 235 LSLGVLKPPG-A------YGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FV-RQL---PGRLVSETVDVEGRRGFIL 301 (438)
T ss_dssp TGGGTBCCHH-H------HTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GG-GGC---CSCCEEEEEBTTSCEEEEE
T ss_pred hhccCcCCCc-c------CCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HH-HhC---CCceeccccccCCCcceee
Confidence 4444433331 1 158999999888 78888 9999988755 33 222 22221111100000 0
Q ss_pred CC--CC--ceeccCCC-c---c-hHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEE
Q 046506 154 DY--KD--WQITLSRR-F---R-SLKLWFV--LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFR 221 (310)
Q Consensus 154 ~~--~~--~~~~~~~~-~---~-~~~~~~~--l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~ 221 (310)
++ .+ ...+.+.. . . .++++++ +..++.++++++.++..++++++.+.|+++||+++..+ +...++.+.
T Consensus 302 ~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 381 (438)
T 1wyu_A 302 TLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALA 381 (438)
T ss_dssp CCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEE
T ss_pred eccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEe
Confidence 00 00 00011111 1 1 2233333 66677889999999999999999999999999998865 334445554
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEE-EEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAY-MTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.... ..++.+.|.++|... ..+..+...+.+|+|++ .++|++|+++++++|+++
T Consensus 382 ~~~~------------------------~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~-~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 382 LPKD------------------------PEAVRRALAERGFHGATPVPREYGENLALFAAT-ELHEEEDLLALREALKEV 436 (438)
T ss_dssp CSSC------------------------HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred CCCC------------------------HHHHHHHHHHCCceeccccccccCCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence 3211 146777787777543 12222123578999976 689999999999999875
Q ss_pred H
Q 046506 301 L 301 (310)
Q Consensus 301 ~ 301 (310)
+
T Consensus 437 l 437 (438)
T 1wyu_A 437 L 437 (438)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=166.68 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=162.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|. +|+++|+++|++....+..+.+|++++++|++|.+.|+++|+++|++||+++++|++|
T Consensus 145 ~~~g~~---~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~ 214 (399)
T 3tqx_A 145 RLCKAQ---RYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSH 214 (399)
T ss_dssp HSCCSE---EEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCc---eeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 344554 666554 5678999999876543334678999999999999999999999999999999999999
Q ss_pred ccccccChh--hhhhhcC-CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 84 AGSACICPE--FRHFIDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 84 ~~~~~~~~~--~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+.+....+. ... ..+ ....|+++.++||+++++.| |+++.+ +..+.........|....
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~~~~~~~~~~~~~--------------- 276 (399)
T 3tqx_A 215 AVGFIGENGRGTPE-YCGVADRVDILTGTLGKALGGASG-GYTSGH-KEIIEWLRNRSRPYLFSN--------------- 276 (399)
T ss_dssp TTTTSSTTSCCHHH-HHTCTTCCSEEEEESSSSSCSSCC-EEEEEC-HHHHHHHHHHCHHHHSSC---------------
T ss_pred cccccCCCCCchHH-hhCCCCCCcEEEecchHhcccCce-EEEEcC-HHHHHHHHHhCcceeccC---------------
Confidence 754432211 011 111 13579999999999996666 666554 444433222111221110
Q ss_pred ccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
+.. .....+.++++... ++.+++.++..++.+++.+.|+++ ++++. ++..+++.+.+...
T Consensus 277 --~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------------- 337 (399)
T 3tqx_A 277 --TVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGDA-------------- 337 (399)
T ss_dssp --CCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEECH--------------
T ss_pred --CCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCH--------------
Confidence 101 11223334444332 557888899999999999999887 77766 56677777776541
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeE----ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAV----LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
....++.+.|.++|.. +.+.. ..+.+++|++++ +.++++|++.++++|+++++++
T Consensus 338 --------~~~~~~~~~l~~~gi~-v~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 338 --------QLATNMADHLLQEGIY-VVGFSYPVVPMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp --------HHHHHHHHHHHHTTEE-CCEECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHCCCE-EeeeCCCCCCCCCceEEEEee-cCCCHHHHHHHHHHHHHHHHHh
Confidence 2235677788887754 33332 234579999966 5799999999999999988764
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=174.39 Aligned_cols=249 Identities=10% Similarity=0.044 Sum_probs=157.3
Q ss_pred EEEEec--CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccC
Q 046506 13 FRAIKT--TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACIC 90 (310)
Q Consensus 13 v~~v~~--~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~ 90 (310)
++.++. ++. ++.+|+++|++++++. +|.+|++ +.++++ .+.|+++|+++|++||+++++|+||+.+....
T Consensus 166 ~~~v~~~~~~~-~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~ 237 (483)
T 1rv3_A 166 FESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA 237 (483)
T ss_dssp SEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH
T ss_pred EEEEECccccC-CCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc
Confidence 445554 643 4689999999999842 1446777 777766 88999999999999999999999998765543
Q ss_pred hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchh-HHhhhccCCccccccccccccccCCC-CceeccCCCc-c
Q 046506 91 PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVDYK-DWQITLSRRF-R 167 (310)
Q Consensus 91 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 167 (310)
+..... +.++|++++++||+|.+|.| |+++++++.. +...-.....|-... ..+.. ....+++... .
T Consensus 238 ~~~~~p---~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~~~------~~~~~~~~~~~g~~~~~~ 307 (483)
T 1rv3_A 238 GVVPSP---FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLES------LINSAVFPGLQGGPHNHA 307 (483)
T ss_dssp TSSCCG---GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHH------HHHHHHTTTTCCSCCHHH
T ss_pred CCCCCC---CCCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHHHH------HhhhhcCCcccCCccHHH
Confidence 221111 12589999999999999998 9999887521 000000000000000 00000 0001222111 2
Q ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 168 SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
..++.++++.....+++++.++..++++++.+.|.+. |++++.+. ....+.+.+.+.+. +
T Consensus 308 iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~g~--------------~---- 368 (483)
T 1rv3_A 308 IAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGT--------------D---- 368 (483)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTC--------------C----
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCCCC--------------C----
Confidence 3455567766666788999999999999999999987 89987542 23344454443110 0
Q ss_pred HHHHHHHHHHHHhcCcEEEE----EeE--ECCEeEEEEEccCCCCC----HHHHHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINASGKAYMT----HAV--LGGIYAIRFAAGATLTE----ERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 247 ~~~~~~l~~~l~~~g~~~~~----~~~--~~~~~~iRis~~~~~~t----~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.+.| +.+. +.. ..+.+.+|+|++ .+|+ ++|++++++.|++++..
T Consensus 369 ---~~~~~~~L~~~g-I~v~~~~~pg~~~~~~~~~iRis~~-~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 369 ---GGRAEKVLEACS-IACNKNTCPGDKSALRPSGLRLGTP-ALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp ---HHHHHHHHHHTT-EECEEECCSSCSCTTSCCEEEEECH-HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCC-cEEecCCCCCCCcCCCCceEEeecC-CcccCCCCHHHHHHHHHHHHHHHHh
Confidence 124555665666 4444 221 113568999976 4567 99999999999988765
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=171.97 Aligned_cols=242 Identities=14% Similarity=0.103 Sum_probs=160.1
Q ss_pred eecCCCCCCEEEEe--cCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeec
Q 046506 4 QIVGIDVKNFRAIK--TTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 4 ~~~g~~~~~v~~v~--~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
+..|+. ++.+| .+++ +.+|+++|+++|++.... ..+.++++++++|++|.+.|+++|+++|++||+++++|+
T Consensus 111 ~~~g~~---~~~v~~~~~~~--~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~ 184 (371)
T 2e7j_A 111 ERAGLN---IALVPKTDYPD--YAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG 184 (371)
T ss_dssp HHTTCE---EEEECCCCTTT--CCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC
T ss_pred HHcCCe---EEEeecccCCC--CCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEEC
Confidence 445665 88999 7653 589999999999754211 125688999999999999999999999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHh-hhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVN-SLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|+.+..+.+... . ++|+++.|+||++++|.++|+++++++ .+.. .......+... ..+
T Consensus 185 a~~~~~~~~~~~~-----~-~~di~~~s~sK~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~ 244 (371)
T 2e7j_A 185 AYAIGRMPVSLKE-----I-GADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKE-------------VEL 244 (371)
T ss_dssp TTTBTTBCCCHHH-----H-TCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSB-------------GGG
T ss_pred ccccCCCCCChhh-----c-CCCEEEecCCcCCCCCCCcEEEEEech-hhhhhccccccCcccc-------------ccc
Confidence 9988765432111 1 479999999999999989999998765 3222 11111111100 000
Q ss_pred ccCC-Ccc-hHHHHHHHHHhCHHHHHHHHHHH--HHHHHHHHHHHcCCCCeEEecCC--CceEEEEEEcCCcchhhhhhh
Q 046506 161 TLSR-RFR-SLKLWFVLRNYGVANLRHFLRSH--VNMAKLFERLVGSDKRFEVVFPR--HFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 161 ~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~--~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~~~~~~~~~~~~~~~~ 234 (310)
..+. ... ..++.++++.+.. ++.++. .++++++.+.|+++ ++++..++ ..+++++.+. +
T Consensus 245 ~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~-------- 309 (371)
T 2e7j_A 245 LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--V-------- 309 (371)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--H--------
T ss_pred ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--C--------
Confidence 1111 111 2233344443321 566777 88999999999987 89887553 4667767653 1
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-C---C--EeEEE-EEccCCC-CCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVL-G---G--IYAIR-FAAGATL-TEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~---~--~~~iR-is~~~~~-~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.+.|... .+... . + .+.+| +++. .. ++++++++++++|++++++
T Consensus 310 ---------------~~~~~~~l~~~gi~~-~~~~~~~~~~g~~~~~iRii~~~-~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 310 ---------------LYEISKKAKGGRFFL-YRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp ---------------HHHHHHHSSSGGGHH-HHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHCCEEE-EeccccccccCCCCCceEEEEee-ccCCCHHHHHHHHHHHHHHHHh
Confidence 124555555444322 11100 0 1 46789 9966 45 8999999999999988764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=172.26 Aligned_cols=247 Identities=13% Similarity=0.081 Sum_probs=144.4
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|.. ++.+|.+++ +.+|+++|+++|++. +.++++++.+|++|.+.|+++|+++|++||+++++|++|+.
T Consensus 132 ~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~ 200 (400)
T 3vax_A 132 RGFE---VDFLTPGPS--GRISVEGVMERLRPD------TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGY 200 (400)
T ss_dssp TTCE---EEEECCCTT--CCCCHHHHHTTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTT
T ss_pred cCCe---EEEEccCCC--CCcCHHHHHHhcCCC------ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhc
Confidence 3555 899999864 589999999999754 56889999999999999999999999999999999999986
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEE-EeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLW-VKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~-v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
+....+ .... +|+++.++||+ ++|.|+|+++ ++++.......... +++..... ...+..+.
T Consensus 201 ~~~~~~-----~~~~--~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~ 262 (400)
T 3vax_A 201 GKVPGD-----LTTP--IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLE-PIMFGGGQ---------ERKLRPGT 262 (400)
T ss_dssp TTSGGG-----GGSC--CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCC-CSSCSSCT---------GGGTSCSC
T ss_pred CCCCcC-----hhhc--CcEEEEeHHHh-CCCCceEEEEEecchhccccccccC-ceecCCCc---------eeeeecCC
Confidence 654332 1222 89999999995 5688999999 88743210000011 11111100 00011111
Q ss_pred -C-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcchhhhhhhhcccc
Q 046506 165 -R-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 165 -~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
. ....++.++++.+ .++++++.++..++++++.+.|+ .+++++..++. .+++.|.+.+.+
T Consensus 263 ~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 327 (400)
T 3vax_A 263 LPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVD------------- 327 (400)
T ss_dssp CCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCC-------------
T ss_pred CCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCC-------------
Confidence 1 1122333444433 34678899999999999999999 88999875543 357777765421
Q ss_pred chhHHHHHHHHHHH-HHHHHhcCcEEEEEeEE--------C-C----EeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNREL-LESINASGKAYMTHAVL--------G-G----IYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 240 ~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~--------~-~----~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. ..+.+.+ .+.+...|..+...... + . .+.+|+++++..++++|+++++++|+++++
T Consensus 328 --~----~~l~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 328 --A----EAFLVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp --H----HHHHHHHHHHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred --H----HHHHHHHhcCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 1 1111111 33444455444332100 0 0 378999972357899999999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=168.53 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=154.2
Q ss_pred CCCCCCEEEEecCCCCCcccCHHHHHH-HHHHHH-HcCCCcEEEEEeccCCcccc---cCChHHHHHHHHHhCcEEEeec
Q 046506 7 GIDVKNFRAIKTTKSSSYGLSPDSLMA-KINSDV-EAGLIPLFLCATIGTTAITA---VDTLKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 7 g~~~~~v~~v~~~~~~~~~id~~~Le~-~i~~~~-~~~~~~~~v~~~~~~~~~G~---~~pl~~I~~l~~~~g~~l~vD~ 81 (310)
|.. ++.+|.+ .+.+|+++|++ +|++.. ..+..+.+|++++.++ +|. .+++++|+++|++||+++|+|+
T Consensus 108 g~~---~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~ 180 (356)
T 1v72_A 108 GAK---LMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDG 180 (356)
T ss_dssp SCE---EEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcE---EEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 665 7888875 35899999999 886421 0111256777777554 999 5668999999999999999999
Q ss_pred ccccccccChhhhhhhcCC-CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGV-EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+|+.+............++ .++|++++++||+ +.|.|+|+++. +++.+....... .+... .
T Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~-~~~~~~~~~~~~-~~~~~---------------~ 242 (356)
T 1v72_A 181 SRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLF-NTSLATEMSYRR-KRAGH---------------L 242 (356)
T ss_dssp TTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEES-SGGGHHHHHHHH-HHTTC---------------C
T ss_pred hhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEE-CHHHHhhHHHHh-hccCc---------------h
Confidence 9975432111101001111 2589999999999 67888888876 444433221000 00000 0
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
..........++..+....+.++.++..++++++.+.|++++++++..++..+++.+.+.
T Consensus 243 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----------------- 302 (356)
T 1v72_A 243 ---SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----------------- 302 (356)
T ss_dssp ---CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----------------
T ss_pred ---hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-----------------
Confidence 001122333345555445577788888999999999999888999876666777766552
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++.+.|.++|.....+. +. .+++|++++ +.++++|+++++++|++++++.
T Consensus 303 ----------~~~~~~l~~~gi~v~~g~-~~-~~~iRi~~~-~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 ----------SAMIDALLKAGFGFYHDR-WG-PNVVRFVTS-FATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp ----------HHHHHHHHHTTCBCBCSS-SS-TTEEEEECC-TTCCHHHHHHHHHHHHHTC---
T ss_pred ----------HHHHHHHHhcCeEEeccc-cC-CCeEEEEec-CCCCHHHHHHHHHHHHHHHHhh
Confidence 146666767775443222 22 568999944 6789999999999999876553
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-19 Score=164.81 Aligned_cols=231 Identities=14% Similarity=0.030 Sum_probs=156.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCC-CC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGV-EG 102 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~ 102 (310)
+|+++|+++|++... ..+.+|+++..+|++|.+.|+++|+++|++||+++++|++|+.+.+... ..... .++ .+
T Consensus 178 ~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~-g~~~~~~~~~~~~ 254 (427)
T 2w8t_A 178 NSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPN-GRGVYEAQGLEGQ 254 (427)
T ss_dssp TCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHTTCTTC
T ss_pred CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCC-CCchHhhcCCCcC
Confidence 689999999976311 1256888888899999999999999999999999999999987765311 11111 111 25
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
+|+++.++||+++ +.| |+++.+ ++.+........+|... ++.. ....++.++++.+.
T Consensus 255 ~di~~~s~sK~~g-~~g-G~v~~~-~~l~~~l~~~~~~~~~~-----------------~~~~~~~~aa~~~al~~~~-- 312 (427)
T 2w8t_A 255 IDFVVGTFSKSVG-TVG-GFVVSN-HPKFEAVRLACRPYIFT-----------------ASLPPSVVATATTSIRKLM-- 312 (427)
T ss_dssp CSEEEEESSSTTC-SCC-EEEEEC-CTTGGGGGGTCHHHHSS-----------------CCCCHHHHHHHHHHHHHHT--
T ss_pred CcEEEecchhhhc-cCC-CEEEeC-HHHHHHHHHhccccccc-----------------CCCCHHHHHHHHHHHHHHh--
Confidence 8999999999997 445 777665 43432221111122211 1111 12233334555432
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
..+++.++..++++++.+.|+++ ++++..++ ..+++.+.+.. .....++.+.|.++
T Consensus 313 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~~L~~~ 369 (427)
T 2w8t_A 313 TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED----------------------QEQAAMMWQALLDG 369 (427)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS----------------------HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC----------------------HHHHHHHHHHHHHC
Confidence 24778888999999999999887 88887455 67778777753 12235677788888
Q ss_pred CcEEEEEeE----ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 261 GKAYMTHAV----LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 261 g~~~~~~~~----~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
|. ++.+.. ..+..++|++++ ..++++|+++++++|+++++++.+
T Consensus 370 Gi-~v~~~~~~~~~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 370 GL-YVNMARPPATPAGTFLLRCSIC-AEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp TE-ECEEECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred Ce-EEeeeCCCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHHHHHHHhCc
Confidence 74 444332 124579999966 568999999999999999887644
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-19 Score=161.92 Aligned_cols=232 Identities=15% Similarity=0.080 Sum_probs=152.6
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccc-c-ChhhhhhhcCCCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSAC-I-CPEFRHFIDGVEGA 103 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~ 103 (310)
+|+++|+++|++....+..+.+|++++++|++|.+.|+++|.++|++||+++++|++|+.+.. . .........-..+.
T Consensus 159 ~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~ 238 (401)
T 1fc4_A 159 NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRV 238 (401)
T ss_dssp TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCC
T ss_pred CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCC
Confidence 578999999987543222356888899999999999999999999999999999999964443 1 11111111111247
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 182 (310)
|+++.++||+++++.| |+++.+ ++.+........++.. ..+.. .....+.++++.+. .
T Consensus 239 di~~~s~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~~-----------------~~~~~~~~~~a~~~~l~~~~--~ 297 (401)
T 1fc4_A 239 DIITGTLGKALGGASG-GYTAAR-KEVVEWLRQRSRPYLF-----------------SNSLAPAIVAASIKVLEMVE--A 297 (401)
T ss_dssp SEEEEESSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHHH-----------------SCCCCHHHHHHHHHHHHHHH--T
T ss_pred cEEEecchhhccCCCC-EEEEcC-HHHHHHHHHhCcCcee-----------------CCCCCHHHHHHHHHHHHHHh--c
Confidence 9999999999966666 777764 5444332221111111 00111 12223333444331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
.+++.++..++++++.+.|+++ ++++. ++..+++.+.+.. .....++.+.|.++|.
T Consensus 298 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~----------------------~~~~~~l~~~l~~~gi 353 (401)
T 1fc4_A 298 GSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD----------------------AVVAQKFARELQKEGI 353 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC----------------------HHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC----------------------hHHHHHHHHHHHHCCc
Confidence 4677888899999999999887 77766 5567777777743 1122467777877774
Q ss_pred EEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 263 AYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 263 ~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.+... .+..++|++++ ..+++++++.++++|+++++++
T Consensus 354 -~v~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 354 -YVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -ECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred -EEeeecCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 4333221 23578999966 5689999999999999988765
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=167.74 Aligned_cols=251 Identities=9% Similarity=0.055 Sum_probs=161.9
Q ss_pred ceecCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTT-KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~-~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~ 78 (310)
++..|.. ++.+|.+ +++.+.+|+++|+++|++. .+.+|++++++|++|.+ .++++|+++|++||++++
T Consensus 126 ~~~~g~~---~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li 197 (391)
T 3dzz_A 126 IEGNGRR---VISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLI 197 (391)
T ss_dssp HHHTTCE---EEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHcCCE---EEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEE
Confidence 3445665 8888886 2345669999999999732 25578888999999999 779999999999999999
Q ss_pred eecccccccccChhhhhhhcC-CCCCC--eeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 79 VDAAYAGSACICPEFRHFIDG-VEGAD--SFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~-~~~~D--~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
+|++|+.+............. ....| +++.|+||+++ ....+|+++++++............+. ..
T Consensus 198 ~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~--------- 267 (391)
T 3dzz_A 198 SDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG-IG--------- 267 (391)
T ss_dssp EECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT-CS---------
T ss_pred EecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhc-cC---------
Confidence 999997655432111111110 01256 88899999996 345678887765644322211000000 00
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
+.-.....++.+++.. +.+.++++.++..++++++.+.|++ +|++++..+.....+.+.+.....
T Consensus 268 -------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 333 (391)
T 3dzz_A 268 -------EPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGM------ 333 (391)
T ss_dssp -------SCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCS------
T ss_pred -------CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCC------
Confidence 0011222333444443 4566888999999999999999998 899988744333334455543110
Q ss_pred hhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESIN-ASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.|. +.|. .+.+. .. .+.+++|+|++ +++++++.+++.|+++++++
T Consensus 334 --------~-------~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 334 --------N-------AEDFCKYLREKTGL-IISAGNGYRGNGHEFVRINLA---CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp --------C-------HHHHHHHHHHHHCE-ECEESGGGCTTGGGEEEEECC---SCHHHHHHHHHHHHHHHHTC
T ss_pred --------C-------HHHHHHHHHHhCCE-EEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 0 145667775 5664 44432 12 23579999955 58999999999999887654
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=165.01 Aligned_cols=254 Identities=12% Similarity=0.046 Sum_probs=155.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|+. ++++|.++++ .+|+++|+++|++. +.+|++++. +|.+.|+++|+++|++||+++++|++|
T Consensus 92 ~~~g~~---~~~~~~~~~~--~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~ 157 (375)
T 2fnu_A 92 LESGYT---PVFAGIKNDG--NIDELALEKLINER------TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSH 157 (375)
T ss_dssp HHTTCE---EEECCBCTTS--SBCGGGSGGGCCTT------EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHCCCE---EEEeccCCCC--CCCHHHHHhhcCcC------ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECcc
Confidence 345666 8899998753 79999999998653 345555554 899999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeC-chhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKD-PSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
+.+...... . ......++++++++||++ +| |.|++++.+ ++......... ....... ..+.+. ....
T Consensus 158 ~~~~~~~~~--~-~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~--~~~~ 225 (375)
T 2fnu_A 158 ALGSEYQNK--K-VGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFR----SHGMLKK-DFFEGE--VKSI 225 (375)
T ss_dssp CTTCEETTE--E-TTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHT----BTTEEES-SSSCEE--ESSC
T ss_pred ccCCeECCe--e-ccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHH----hcCCccc-cccccc--cccc
Confidence 876544221 1 111223566677788998 45 789888854 44332221110 0000000 000000 0001
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----CceEEEEEEcCCcchhhhhhhhcc
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----HFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
+.++....+.+++.....++++++.++..++++++.+.|+++|++++..++ ...++.+.+.....
T Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 295 (375)
T 2fnu_A 226 GHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF---------- 295 (375)
T ss_dssp CCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----------
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcccc----------
Confidence 111122222233333334677888999999999999999999899887542 12233455543100
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEE---EeE----EC--------------CEeEEEEEccCCCCCHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMT---HAV----LG--------------GIYAIRFAAGATLTEERHVMVAWTV 296 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~----~~--------------~~~~iRis~~~~~~t~edi~~li~~ 296 (310)
. ...++.+.|.+.|..... +.. +. ....+|++++ +++|++|+++++++
T Consensus 296 ---------~-~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~-~~~t~~~i~~~~~~ 364 (375)
T 2fnu_A 296 ---------T-CKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCH-ANLNLESVQNIAHS 364 (375)
T ss_dssp ---------G-GHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCC-TTCCHHHHHHHHHH
T ss_pred ---------c-hHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCC-CCCCHHHHHHHHHH
Confidence 0 114566777777643221 100 00 1268999955 67999999999999
Q ss_pred HHHHHHHH
Q 046506 297 VQEHLEAL 304 (310)
Q Consensus 297 l~~~~~~~ 304 (310)
|++++.++
T Consensus 365 l~~~~~~~ 372 (375)
T 2fnu_A 365 VLKTFESF 372 (375)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=158.84 Aligned_cols=242 Identities=13% Similarity=0.110 Sum_probs=154.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHH-HcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDV-EAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~-~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++..|+. ++.+|.+ ++.+|+++|+++|++.. ..+..+.+|++++. |++|.+.| +++|+++|++||+++|
T Consensus 109 ~~~~g~~---~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li 181 (359)
T 1svv_A 109 IEATGHK---VVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLF 181 (359)
T ss_dssp HHHTTCC---EEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HhcCCCe---eEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEE
Confidence 3455666 8999986 35899999999998641 11112457777776 67999998 9999999999999999
Q ss_pred eecccccc---cccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 79 VDAAYAGS---ACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 79 vD~a~~~~---~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
+|++|..+ ....+...-... ..+|++++++||+ ++|.|+|+++++++ .+..... +......
T Consensus 182 ~De~~~~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~-g~~~~~g~l~~~~~-~~~~~~~----~~~~~~~-------- 245 (359)
T 1svv_A 182 LDGARLASALSSPVNDLTLADIA--RLTDMFYIGATKA-GGMFGEALIILNDA-LKPNARH----LIKQRGA-------- 245 (359)
T ss_dssp EECTTHHHHHTSTTCCCCHHHHH--HHCSEEEEECTTT-TCSSCEEEEECSGG-GCTTHHH----HHHHTTC--------
T ss_pred EEccchhhhhcCCCcchhhhhhh--hcCCEEEEecccC-CCCCceEEEEEccc-HHHHHHH----HHhcCCc--------
Confidence 99999432 221111000000 1489999999998 55888998887544 3211110 0000000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
....+.+ .... ....+...+++++.++..++++++.+.| +.+++++..+...+++.+.+.
T Consensus 246 ---~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------------ 305 (359)
T 1svv_A 246 ---LMAKGWL-LGIQ---FEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------------ 305 (359)
T ss_dssp ---CCTTTHH-HHHH---HHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE------------
T ss_pred ---ccccchh-hHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC------------
Confidence 0000000 1111 1223445577889999999999999999 567888775555665544332
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++.+.|.++ |... .+....+.+++|++++ +.++++|+++++++|+++++++
T Consensus 306 ---------------~~~~~~l~~~~gi~v-~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ---------------NTMIAELNNDFDMYT-VEPLKDGTCIMRLCTS-WATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ---------------HHHHHHHTTTEECEE-EEEETTTEEEEEEECC-TTCCHHHHHHHHHHHHHC----
T ss_pred ---------------HHHHHHHHHhcCEEE-EecccCCCceEEEEcc-CcCCHHHHHHHHHHHHHHHhcc
Confidence 2567778777 6544 2222235789999954 6789999999999999876543
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=160.80 Aligned_cols=237 Identities=9% Similarity=0.030 Sum_probs=151.8
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhh
Q 046506 15 AIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR 94 (310)
Q Consensus 15 ~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~ 94 (310)
.+++++. ++.+|+++|++++.+.+ |.+|++.. +..|...|+++|+++|++||+++|+|+||+.+........
T Consensus 180 ~~~vd~~-~~~iD~d~le~~l~~~~-----~klIi~~~--s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~ 251 (490)
T 2a7v_A 180 PYKLNPK-TGLIDYNQLALTARLFR-----PRLIIAGT--SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp -CCBCTT-TCSBCHHHHHHHHHHHC-----CSEEEECC--SSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred ecccccc-cCCcCHHHHHHHHhhcC-----CcEEEEcC--CCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCC
Confidence 4445542 46999999999997632 44555433 3346678999999999999999999999976654322111
Q ss_pred hhhcCCCCCCeeeeecccccccccceEEEEEeCch-------------hHHhhhccCCccccccccccccccCCCCceec
Q 046506 95 HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPS-------------DLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 95 ~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~-------------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
.. +.++|++++++||+|++|.| |+++.++.. .+.+.+. ..++. ..+
T Consensus 252 ~~---~~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~~--------------g~q 310 (490)
T 2a7v_A 252 SP---FKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRIN---FAVFP--------------SLQ 310 (490)
T ss_dssp CG---GGTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHH---HHHTT--------------TTC
T ss_pred CC---CCCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHH---HHhcc--------------cCC
Confidence 11 12599999999999999987 787777641 0111110 00000 112
Q ss_pred cCCCcc-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 162 LSRRFR-SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 162 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
++.... ..++.+++.....+.++++.++..++++++++.|.+. |++++.+ ..++++.+.+.+....
T Consensus 311 ggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~~----------- 378 (490)
T 2a7v_A 311 GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLD----------- 378 (490)
T ss_dssp CSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCC-----------
T ss_pred CCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCCC-----------
Confidence 222222 2334445554434566888999999999999999986 9998753 4567777777653210
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E-----CCEeEEEEEc---cCCCCCHHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAV-L-----GGIYAIRFAA---GATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-----~~~~~iRis~---~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.+.|+ .+.... + .....||++. ++...+++|++++.+.|.+++..
T Consensus 379 ----------~~~~~~~L~~~GI-~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 379 ----------GARAERVLELVSI-TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp ----------HHHHHHHHHHTTE-ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhCCe-EEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 1345666666664 444321 1 1246899963 23457899999999999888753
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=164.08 Aligned_cols=255 Identities=13% Similarity=0.058 Sum_probs=164.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++.+.+.+|+++|+++|++. +..+++.+++|++|.+.| +++|+++|++||+++++
T Consensus 159 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~ 229 (427)
T 3dyd_A 159 AESMGIE---VKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILA 229 (427)
T ss_dssp HHHTTCE---EEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHcCCE---EEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3456776 88899876445689999999999653 457888889999999999 99999999999999999
Q ss_pred ecccccccccChhhhhhhcCC-CCCC-eeeeecccccccc-cceEEEEEeCch-----hHHhhhccCCcccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFIDGV-EGAD-SFSLNAHKWFFTT-LDCCCLWVKDPS-----DLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~-~~~D-~~~~~~hK~l~~p-~g~g~l~v~~~~-----~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
|++|+.+.......... ..+ ...+ +++.|+||.++.| ..+|+++++++. .+...+.. +.....
T Consensus 230 Deay~~~~~~g~~~~~~-~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~---~~~~~~----- 300 (427)
T 3dyd_A 230 DEIYGDMVFSDCKYEPL-ATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK---LSQRIL----- 300 (427)
T ss_dssp ECTTTTCBCSSCCCCCG-GGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH---HHHHHC-----
T ss_pred EcCchhhccCCCcCccH-HHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH---HHhccC-----
Confidence 99997654332111110 011 1122 4557999986654 347888887641 11111110 000000
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhh
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~ 231 (310)
+.-.....++.++++....++++++.++..++++++.+.|+++|++.+..+.....+.+.+......
T Consensus 301 ----------~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~--- 367 (427)
T 3dyd_A 301 ----------GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFP--- 367 (427)
T ss_dssp ----------CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCT---
T ss_pred ----------CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcC---
Confidence 0001123344445554456778899999999999999999999999887555555666666521000
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 232 KTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.. ....++.+.|. +.|.+...+......+++|+++. +++++++.+++.|++++++++
T Consensus 368 ---------~~-----~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 368 ---------EF-----ENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT---VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp ---------TC-----SSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC---SCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------CC-----CCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC---CCHHHHHHHHHHHHHHHHHhh
Confidence 00 00134556664 55644433333334578999954 689999999999999887764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=172.24 Aligned_cols=261 Identities=12% Similarity=0.047 Sum_probs=165.6
Q ss_pred eecCCCCCCEEEEecCCCCC---ccc-----CHHHHHHHHHHH--HH--cCCCcEEEEEeccCCcccccCChHHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTKSSS---YGL-----SPDSLMAKINSD--VE--AGLIPLFLCATIGTTAITAVDTLKPLCDVAK 71 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~---~~i-----d~~~Le~~i~~~--~~--~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~ 71 (310)
...|.. +++++++.++- +.+ |+++|+++|++. ++ .+..|.+++++++ |.+|.+.|+++|+++|+
T Consensus 263 ~~~G~~---~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~ 338 (755)
T 2vyc_A 263 MLTGAK---PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLE 338 (755)
T ss_dssp HHHCCE---EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHT
T ss_pred HHcCCE---EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHH
Confidence 345665 88888865310 235 999999999863 11 2333456777765 67999999999999999
Q ss_pred HhCcEEEeecccccccccChhhhhhhcCCCC--CCe------eeeecccccccccceEEEEEeCc--hhHHhhhccCCcc
Q 046506 72 QFGIWVHVDAAYAGSACICPEFRHFIDGVEG--ADS------FSLNAHKWFFTTLDCCCLWVKDP--SDLVNSLSTNPEY 141 (310)
Q Consensus 72 ~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~--~D~------~~~~~hK~l~~p~g~g~l~v~~~--~~~~~~~~~~~~y 141 (310)
+||+++|||+||+++....+.+++. ..+.+ +|+ ++.|+||++++|.++|++++++. ..-...+......
T Consensus 339 ~~~~~livDeA~~~~~~~~~~~~~~-~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~ 417 (755)
T 2vyc_A 339 KTSDRLHFDEAWYGYARFNPIYADH-YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMM 417 (755)
T ss_dssp TTCSEEEEECTTCTTGGGCGGGTTS-SSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHH
T ss_pred HcCCEEEEECcCchhcccCcccCCc-chhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHH
Confidence 9999999999997654444332111 11124 687 99999999999999999998866 1100111000000
Q ss_pred ccccccccccccCCCCceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC---------eEEe
Q 046506 142 LKNKATESKQVVDYKDWQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR---------FEVV 210 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~---------~~v~ 210 (310)
++.+.+ ...+++.++++.+..++.++++++..++++++++.|.++++ ++++
T Consensus 418 ------------------~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~ 479 (755)
T 2vyc_A 418 ------------------HATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPW 479 (755)
T ss_dssp ------------------TSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEES
T ss_pred ------------------hCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeecc
Confidence 011111 12345556666666665678899999999999999998877 7776
Q ss_pred cCCC-------------------------------------------------ceEEEEEEcCCcchhhhhhhhccccch
Q 046506 211 FPRH-------------------------------------------------FAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 211 ~~~~-------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
++.. ...+++...+.+.. +.+.+. -.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~----G~~~~~-g~ 554 (755)
T 2vyc_A 480 NKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGED----GELEET-GV 554 (755)
T ss_dssp SCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTT----SSBCSS-CC
T ss_pred CchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCC----CCcccc-CC
Confidence 5421 12445555431100 000000 00
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ...+.+.|.+.|+ .+... +.+.+|++++ +.+|++++++++++|+++.+..
T Consensus 555 ~-------~~~l~~~L~~~gI-~~e~~---~~~~v~~~~~-~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 555 P-------AALVTAWLGRHGI-VPTRT---TDFQIMFLFS-MGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp C-------HHHHHHHHHTTTC-CCSEE---CSSEEEEECC-TTCCTTTTHHHHHHHHHHHHHH
T ss_pred c-------HHHHHHHHHHCCC-EEeec---CCCeEEEEEC-CCCCHHHHHHHHHHHHHHHHhh
Confidence 0 1356666766653 33221 4568899955 8899999999999999997654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=159.87 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=155.0
Q ss_pred EEEEec--CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccC
Q 046506 13 FRAIKT--TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACIC 90 (310)
Q Consensus 13 v~~v~~--~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~ 90 (310)
+..++. +++ .+.+|+++|+++|++.. +.+|++..+++ |.+.|+++|+++|++||+++++|++|+.+....
T Consensus 136 ~~~~~~~~~~~-~~~~d~~~l~~~l~~~~-----~~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 207 (407)
T 2dkj_A 136 YKVVSYGVRPD-TELIDLEEVRRLALEHR-----PKVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAA 207 (407)
T ss_dssp SEEEEECCCTT-TSSCCHHHHHHHHHHHC-----CSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT
T ss_pred EEEEecCCCcc-cCccCHHHHHHHHhhcC-----CeEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEcccccccccc
Confidence 344444 432 46899999999997521 33555533333 578899999999999999999999998755433
Q ss_pred hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc-chH
Q 046506 91 PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF-RSL 169 (310)
Q Consensus 91 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 169 (310)
.... ..+..+|+++.|+||+++++.+ |+++++++............+.. ++... ...
T Consensus 208 ~~~~---~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~ 265 (407)
T 2dkj_A 208 GLHP---NPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGIQ------------------GGPLEHVIA 265 (407)
T ss_dssp TCSC---CCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTTC------------------SSCCHHHHH
T ss_pred CccC---CccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhccccc------------------CCCcHHHHH
Confidence 2111 1122479999999999998886 88887645443222111101100 01111 122
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHH
Q 046506 170 KLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINE 248 (310)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (310)
++.++++....++++++.++..++++++.+.|+++ ++++..+ ...+++++.+..... +
T Consensus 266 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~------ 324 (407)
T 2dkj_A 266 GKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPKGL--------------T------ 324 (407)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC--------------C------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcccCC--------------C------
Confidence 44456655444678899999999999999999988 8888754 456777777653100 0
Q ss_pred HHHHHHHHHHhcCcEEEEEeEE-------CCEeEEEEEccCC---CCCHHHHHHHHHHHHHHHHH
Q 046506 249 FNRELLESINASGKAYMTHAVL-------GGIYAIRFAAGAT---LTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 249 ~~~~l~~~l~~~g~~~~~~~~~-------~~~~~iRis~~~~---~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.+.|. .+.+... ...+.+|+|++.+ ..+++|+++++++|++++.+
T Consensus 325 -~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 325 -GKEAEERLDAVGI-TVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -HHHHHHHHHHTTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCc-eecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 1356667767764 4433211 1246799996532 27899999999999988866
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=158.35 Aligned_cols=259 Identities=12% Similarity=0.036 Sum_probs=162.4
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh---HHHHHHHHHhCcEEEeec
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL---KPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl---~~I~~l~~~~g~~l~vD~ 81 (310)
..|.. ++.+|.++++.+.+|+++|+++|++....+..+.+|+++.++|++|.+.|. ++|+++|++||+++++|+
T Consensus 155 ~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 231 (435)
T 3piu_A 155 RTGVE---IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDE 231 (435)
T ss_dssp TTCCE---EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred hcCCE---EEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 35665 899999875556799999999998865544456788888899999998664 788899999999999999
Q ss_pred ccccccccChhh---hhhhcCC--------CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccc
Q 046506 82 AYAGSACICPEF---RHFIDGV--------EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATES 149 (310)
Q Consensus 82 a~~~~~~~~~~~---~~~~~~~--------~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~ 149 (310)
+|+.+.+..... ....... ....++..++||+++.| ..+|+++..++... +.+.....+...
T Consensus 232 a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~-~~~~~~~~~~~~----- 305 (435)
T 3piu_A 232 IYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATKMSSFGLV----- 305 (435)
T ss_dssp TTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHHHGGGSCC-----
T ss_pred cccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHH-HHHHHHhhcCCC-----
Confidence 997654322111 1111110 01227789999999743 45788877555433 222111111100
Q ss_pred ccccCCCCceeccCCCcchHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcc
Q 046506 150 KQVVDYKDWQITLSRRFRSLKLWFVLRNYG--VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAV 227 (310)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~ 227 (310)
+ +.....+.+.+.... .+.+++..++..++.+++.+.|.+. ++++..+....++.+.+.....
T Consensus 306 -------------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~ 370 (435)
T 3piu_A 306 -------------S-SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLR 370 (435)
T ss_dssp -------------C-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSS
T ss_pred -------------C-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccc
Confidence 0 011122222222111 2345677788889999999999987 8887754444566666654100
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
... .....++.+.+.++..+.+.+.. . .+.+++|+++.. .++++++.+++.|+++++++
T Consensus 371 ------------~~~----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 371 ------------SNT----FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFAN--LPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp ------------SSS----HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSS--SCHHHHHHHHHHHHHHHHHH
T ss_pred ------------cCC----chhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeC--CCHHHHHHHHHHHHHHHHHH
Confidence 000 01124566777666334554422 1 346799999653 38999999999999988765
Q ss_pred h
Q 046506 305 L 305 (310)
Q Consensus 305 ~ 305 (310)
.
T Consensus 433 ~ 433 (435)
T 3piu_A 433 Y 433 (435)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=156.82 Aligned_cols=253 Identities=11% Similarity=0.069 Sum_probs=160.0
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeec
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~ 81 (310)
..|+. ++.+|.++++.+.+|+++|+++|++....+..+.+|+++.++|++|.+.| +++|+++|++||+++++|+
T Consensus 152 ~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 228 (428)
T 1iay_A 152 RTGVQ---LIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDE 228 (428)
T ss_dssp TTCCE---EEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred hcCCE---EEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEec
Confidence 45665 88999876434679999999999875433334667888888999999999 9999999999999999999
Q ss_pred ccccccccCh---hhhhhhcC----CCCCC--eeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccc
Q 046506 82 AYAGSACICP---EFRHFIDG----VEGAD--SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 82 a~~~~~~~~~---~~~~~~~~----~~~~D--~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
+|+.+.+... ........ .-..| ++..++||+++.| ..+|++++.++..+....... .+.
T Consensus 229 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~-~~~--------- 298 (428)
T 1iay_A 229 IYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS-SFG--------- 298 (428)
T ss_dssp TTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH-TTS---------
T ss_pred cccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHH-hcc---------
Confidence 9987543211 11111110 00157 7789999998744 236888775554432221110 000
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCc
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNYGV-----ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSA 226 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~ 226 (310)
. ...+...++...+.. +.+++..++..++.+++.+.|+++ ++++..+...+++.+.+....
T Consensus 299 ---------~----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~ 364 (428)
T 1iay_A 299 ---------L----VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLL 364 (428)
T ss_dssp ---------C----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGC
T ss_pred ---------c----CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhc
Confidence 0 012222233333322 245777888889999999999887 777654335556666664310
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-EC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 227 VMDKLKTKYENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-LG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. ... .....++.+.|.++ |. .+.+.. .. +.+++|+++. .+++++++.++++|+++++
T Consensus 365 ~------------~~~----~~~~~~l~~~l~~~~gi-~v~~~~~~~~~~~~~iRis~~--~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 365 R------------EST----FDSEMSLWRVIINDVKL-NVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp S------------SSS----HHHHHHHHHHHHHTSCE-ECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHHH
T ss_pred C------------CCc----hhHHHHHHHHHHHhCCE-EEeCchhhCCCCCCEEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 0 000 01124577777776 64 444322 11 2468999965 3789999999999998765
Q ss_pred H
Q 046506 303 A 303 (310)
Q Consensus 303 ~ 303 (310)
+
T Consensus 426 ~ 426 (428)
T 1iay_A 426 V 426 (428)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-18 Score=154.76 Aligned_cols=254 Identities=13% Similarity=0.128 Sum_probs=157.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. ++++|++++ ++.+|+++|+++|++. +.+|+ .++++|.+.|+++|+++|++||+++|+|++|
T Consensus 96 ~~~g~~---~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~ 162 (388)
T 1b9h_A 96 QRLGAV---TVPVDVDAA-TYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAH 162 (388)
T ss_dssp HHTTCE---EEEECBCTT-TCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTT
T ss_pred HHcCCE---EEEEecCCC-cCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecch
Confidence 445776 899999874 4689999999999643 33444 6778999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchh--HHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD--LVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....... ...+..+++++++.||+++++. .|+++.+++.. +....... .+-... ....+......
T Consensus 163 ~~g~~~~~~~---~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~g 232 (388)
T 1b9h_A 163 AHGARWQGKR---VGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRH-SCGRPR-----DDRRYFHKIAG 232 (388)
T ss_dssp CTTCEETTEE---GGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHT-BTTCCT-----TCSSCCCCSCC
T ss_pred hcCCccCCee---cccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHHH-hCCCCc-----cCccceeeccc
Confidence 8665432111 1112247788888999997764 56666665533 33321111 000000 00000000000
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-----C-CceEEEEEEcCCcchhhhhhhh
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-----R-HFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-----~-~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.+.+...+.+++... ..+.+++..++..++++++.+.|+++|++++..+ + ..+++++.+.+..
T Consensus 233 ~~~~~~~~~~a~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 301 (388)
T 1b9h_A 233 SNMRLNEFSASVLRA--QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT--------- 301 (388)
T ss_dssp CBCBCBHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC---------
T ss_pred ccCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC---------
Confidence 111123333333222 2345677788888899999999999889988752 2 2467777775421
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-----------------------------CEeEEEEEccCCCC-
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLG-----------------------------GIYAIRFAAGATLT- 285 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----------------------------~~~~iRis~~~~~~- 285 (310)
.....++.+.|.++|.......... ....||+++. +.+
T Consensus 302 -----------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~-~~~~ 369 (388)
T 1b9h_A 302 -----------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHR-VLLA 369 (388)
T ss_dssp -----------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGG-GGGS
T ss_pred -----------cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCC-CCCC
Confidence 0112467777777775433221100 0247999966 567
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 046506 286 EERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 286 t~edi~~li~~l~~~~~~ 303 (310)
|++||++++++|+++.++
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999987653
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-19 Score=161.73 Aligned_cols=247 Identities=12% Similarity=0.099 Sum_probs=154.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++.+++.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 131 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (388)
T 1j32_A 131 VKLAEGT---PVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLS 201 (388)
T ss_dssp HHHTTCE---EEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCE---EEEecCCcccCCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3455666 88999875334679999999999653 457888889999999865 99999999999999999
Q ss_pred ecccccccccChh---hhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPE---FRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|++|+.+...... .........+.|++..|+||+++.| | +|+++++++ ......... ... .
T Consensus 202 De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~-G~r~G~~~~~~~-~~~~l~~~~-~~~--~--------- 267 (388)
T 1j32_A 202 DEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT-GWRVGFLAGPVP-LVKAATKIQ-GHS--T--------- 267 (388)
T ss_dssp ECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT-TTCCEEEECCHH-HHHHHHHHH-HTT--T---------
T ss_pred EccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc-ccceEEEEeCHH-HHHHHHHHH-hhc--c---------
Confidence 9999765432211 0100000013788999999998634 5 788876543 332221100 000 0
Q ss_pred CCCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 155 YKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
.+.+ .....+.++++ .+.+.++++.++..++.+++.+.|+++|++++..+.....+.+.+....
T Consensus 268 -------~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------- 332 (388)
T 1j32_A 268 -------SNVCTFAQYGAIAAYE-NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTG------- 332 (388)
T ss_dssp -------CSCCHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGT-------
T ss_pred -------cCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCC-------
Confidence 0000 11122223333 2356678889999999999999999988888764332222323232100
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+ ..++.+.|.+ .|.....+......+++|+|+. +++++++.+++.|+++++++
T Consensus 333 -------~~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 333 -------RS-------SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp -------CC-------HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred -------CC-------HHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 00 1356666765 5643333222222468999954 68999999999999887654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=156.20 Aligned_cols=243 Identities=11% Similarity=0.150 Sum_probs=150.3
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. +++++.+ +++|+++|++. +.+|++++++|++|.+.|+++|+++|++||+++++|++|+
T Consensus 118 ~~g~~---~~~~~~~--------~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 118 LMGVT---VRYVDPE--------PEAVREALSAK------TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp TTTCE---EEEECSS--------HHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGG
T ss_pred HcCCE---EEEECCC--------HHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCc
Confidence 34554 6666653 78999998653 4588889999999999999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeCchh-HHhhhccCCccccccc--ccc--cccc-CCCC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKDPSD-LVNSLSTNPEYLKNKA--TES--KQVV-DYKD 157 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~~~~-~~~~~~~~~~y~~~~~--~~~--~~~~-~~~~ 157 (310)
.+....... . .++|+++.|+||++++|.+ .|++++.++.. ..+.....++...... ... .... ..+.
T Consensus 181 ~~~~~~~~~-----~-~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~ 254 (412)
T 2cb1_A 181 AAGALCRPL-----A-WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRT 254 (412)
T ss_dssp TTTTSCCGG-----G-GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHH
T ss_pred cccccCCcc-----c-cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHH
Confidence 763222111 1 1589999999999999877 78877776421 1000001111110000 000 0000 0000
Q ss_pred ce-eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-C----------------CCceEEE
Q 046506 158 WQ-ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-P----------------RHFAVVC 219 (310)
Q Consensus 158 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~----------------~~~~~v~ 219 (310)
.. ...+........+..+. +.+.+..+.++..++++++.+.|.+.+++.++. + ...++++
T Consensus 255 ~~~~~~g~~~~~~~a~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~ 332 (412)
T 2cb1_A 255 LGLSLCGMALSPFNAYLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILT 332 (412)
T ss_dssp HHTTTTCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEE
T ss_pred HHHHhcCCCCChHHhHHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 00 00111223344444433 334566777888899999999999989987552 2 1356889
Q ss_pred EEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe--------EE----------------CC--E
Q 046506 220 FRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHA--------VL----------------GG--I 273 (310)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~~----------------~~--~ 273 (310)
|.+ +.. +.+...+.+.|.+. .+. .. .+ .
T Consensus 333 ~~~-~~~------------------------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~ 386 (412)
T 2cb1_A 333 LDL-GDL------------------------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP 386 (412)
T ss_dssp EEC-SSH------------------------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT
T ss_pred EEe-CCH------------------------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCC
Confidence 988 521 23344444455433 221 00 01 4
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 274 YAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 274 ~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
+.||+|+. .++++++|+.++++|++
T Consensus 387 ~~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 387 GLVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp TEEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred CeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 79999966 68999999999999874
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=163.03 Aligned_cols=247 Identities=12% Similarity=0.122 Sum_probs=157.5
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC----------c
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG----------I 75 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g----------~ 75 (310)
.|.. ++.+|.++. ++.+|+++|+++|++. +.+|++++++|++|.+.|+++|.++|+++| +
T Consensus 147 ~g~~---v~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~ 216 (432)
T 3a9z_A 147 QVAE---VTFVPVSKV-NGQVEVEDILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRV 216 (432)
T ss_dssp TSCE---EEEECCCTT-TSSCCHHHHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCcE---EEEEecCcc-cCCcCHHHHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCce
Confidence 4565 899998862 3489999999998653 568889999999999999999999999999 9
Q ss_pred EEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 76 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 76 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
++|+|++|+.+..+.+... .++|++++|+||+++ |. +|+++++++... . ...+.+......
T Consensus 217 ~livDea~~~~~~~~~~~~------~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~-~--~~~~~~~~~~~~-------- 277 (432)
T 3a9z_A 217 LVHTDAAQALGKRRVDVED------LGVDFLTIVGHKFYG-PR-IGALYVRGVGKL-T--PLYPMLFGGGQE-------- 277 (432)
T ss_dssp EEEEECTTTTTTSCCCHHH------HCCSEEEEEGGGTTC-CS-CEEEEETTBTTT-B--CCCCSCCSSCGG--------
T ss_pred EEEEEchhhhCCcccChhh------cCCCEEEEehhHhcC-Cc-ceEEEEcccccc-C--CcCceeecCCcc--------
Confidence 9999999987654332111 148999999999875 76 999988765311 1 111222111100
Q ss_pred CCceeccC-CCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe--cC----CC-ceEEEEEEcCCc
Q 046506 156 KDWQITLS-RRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV--FP----RH-FAVVCFRVSPSA 226 (310)
Q Consensus 156 ~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~--~~----~~-~~~v~~~~~~~~ 226 (310)
..++.+ ... ...++.++++.+ .++++++.++..++++++.+.|++++++++. .+ .. .++++|.+....
T Consensus 278 --~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T 3a9z_A 278 --RNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ 354 (432)
T ss_dssp --GGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT
T ss_pred --ccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC
Confidence 001111 111 223344455544 3478889999999999999999886565432 32 12 347778776521
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHHHH----hcCcEEEEE------------eEE--CCEeEEEEEccCCCCCHH
Q 046506 227 VMDKLKTKYENSLLSEEERINEFNRELLESIN----ASGKAYMTH------------AVL--GGIYAIRFAAGATLTEER 288 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~~~~------------~~~--~~~~~iRis~~~~~~t~e 288 (310)
. +. .++.+.+. +.|..+... ... ...+++|+|+. .++|++
T Consensus 355 ~--------------~~-------~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~-~~~t~e 412 (432)
T 3a9z_A 355 L--------------RG-------YMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVG-RSTTRA 412 (432)
T ss_dssp C--------------CH-------HHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECC-TTCCHH
T ss_pred C--------------cH-------HHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcC-CCCCHH
Confidence 0 00 12222221 111111000 000 01268999966 678999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 046506 289 HVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 289 di~~li~~l~~~~~~~~~ 306 (310)
|+++++++|+++++++++
T Consensus 413 ei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 413 EVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999887654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=157.13 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=156.9
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|.. ++.+|.+ |+++|+++++.... ..+.+|++++.+|++|.+.|+++|+++|++||+++++|++|+
T Consensus 151 ~~g~~---~~~v~~~-------d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~ 218 (401)
T 2bwn_A 151 RNAGP---KRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHA 218 (401)
T ss_dssp HSCCC---EEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HcCCe---EEEEcCC-------CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccc
Confidence 34555 7778763 68999999975311 125689999999999999999999999999999999999998
Q ss_pred cccccChhhhhh--hcCC-CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 85 GSACICPEFRHF--IDGV-EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 85 ~~~~~~~~~~~~--~~~~-~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
.+.+. +...+. ..++ ...|.+..+++|+++.|. |++.. ++............+.. .
T Consensus 219 ~g~~~-~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~-~~~~~~~l~~~~~~~~~-----------------~ 277 (401)
T 2bwn_A 219 VGMYG-PRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAA-SARMVDAVRSYAPGFIF-----------------S 277 (401)
T ss_dssp TTTSS-TTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEE-CHHHHHHHHHHCHHHHT-----------------S
T ss_pred ccccC-CCCceeeeccCccccCcEEEeechhhccCCC--CEEec-CHHHHHHHHHhCcCcee-----------------c
Confidence 55321 110000 1111 236888899999998653 65554 44333221111111111 1
Q ss_pred cCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 162 LSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
.+.+ ....++.++++.+...+++++.++..++++++.+.|+++ ++++.. +..+++++.+..
T Consensus 278 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~---------------- 339 (401)
T 2bwn_A 278 TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD---------------- 339 (401)
T ss_dssp BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC----------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC----------------
Confidence 1111 233445667766655677889999999999999999887 787763 455677776643
Q ss_pred hhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESIN-ASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.....++.+.|. +.|. .+.+... .+..++|+|++ .+++++|+++++++|+++++.
T Consensus 340 ------~~~~~~~~~~L~~~~gi-~v~~~~~~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 340 ------PVHTKAVSDMLLSDYGV-YVQPINFPTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp ------HHHHHHHHHHHHHHHCE-ECCEECTTTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC--
T ss_pred ------hHHHHHHHHHHHhcCCE-EEeecCCCCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Confidence 111245677775 5664 4433221 13468999966 578999999999999987654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=155.93 Aligned_cols=240 Identities=13% Similarity=0.004 Sum_probs=155.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|. +|+++|+++|++... ..+.+|++.+.+|++|.+.|+++|+++|++||+++++|++|
T Consensus 145 ~~~g~~---~~~v~~-------~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~ 212 (398)
T 3a2b_A 145 RLSFSK---VIKYGH-------NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAH 212 (398)
T ss_dssp HHSSSE---EEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHcCCc---eEEeCC-------CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCC
Confidence 344554 666654 578999999976311 02568888888999999999999999999999999999999
Q ss_pred ccccccChhhhhh--hcCC-CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 84 AGSACICPEFRHF--IDGV-EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~-~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+.+.+.. ..... ..++ .++|+++.|+||+++ |.| |+++.+ +..+.........+....
T Consensus 213 ~~~~~~~-~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~~~--------------- 273 (398)
T 3a2b_A 213 SLGVIGH-KGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGD-ADVIDFLKHNARSVMFSA--------------- 273 (398)
T ss_dssp TTTTSSG-GGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEEC-HHHHHHHHHHCHHHHSSB---------------
T ss_pred cccccCC-CCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeC-HHHHHHHHHhcccceecC---------------
Confidence 7654311 00110 0111 137999999999987 656 877764 444332211111111110
Q ss_pred ccCCCcch-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 161 TLSRRFRS-LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 161 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
+..... +.+.++++.+ +.++++.++..++.+++.+.|+++ ++++. ++..+++.+.+..
T Consensus 274 --~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~~~~~~--------------- 332 (398)
T 3a2b_A 274 --SMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG-ATESPILPIFIRS--------------- 332 (398)
T ss_dssp --CCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC-SCCSSEEEEECCC---------------
T ss_pred --CCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEcCC---------------
Confidence 001111 1233444432 335677888889999999999887 77765 3456666666542
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.....++.+.|.++|. .+.+... .+.+++|++++ ..++++++++++++|++++.++
T Consensus 333 -------~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 333 -------NEKTFWVTKMLQDDGV-FVNPVVSPAVPAEESLIRFSLM-ATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp -------HHHHHHHHHHHHHTTE-ECEEECTTTSCGGGCEEEEECC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHCCc-EEEeeCCCCCCCCCceEEEEEe-CCCCHHHHHHHHHHHHHHHHHh
Confidence 1112467778888864 4443321 13578999966 4689999999999999988765
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=156.26 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=154.2
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++.++.++. .+.+|+++|+++|++.. +.++++ . .+..|...|+++|+++|++||+++++|++|+.+....+.
T Consensus 138 ~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~~~v~~-~-~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~ 209 (405)
T 2vi8_A 138 FVAYGVDPE-THVIDYDDVREKARLHR-----PKLIVA-A-AAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGL 209 (405)
T ss_dssp EEEECBCTT-TCSBCHHHHHHHHHHHC-----CSEEEE-C-CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS
T ss_pred EEecccccc-cCCcCHHHHHHHHHhcC-----CeEEEE-e-CCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCc
Confidence 666666543 46899999999997631 334544 2 234577779999999999999999999999855443221
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc-chHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF-RSLKL 171 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 171 (310)
.. ..+..+|+++.|+||++++|.| |+++++ +............+.. ++... ...++
T Consensus 210 ~~---~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~l~~~~~~~~~------------------~~~~~~~~aa~ 266 (405)
T 2vi8_A 210 HP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAKQIDKAIFPGIQ------------------GGPLMHVIAAK 266 (405)
T ss_dssp SC---CSTTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHHHHHHHHTTTTC------------------SSCCHHHHHHH
T ss_pred CC---CccccCCEEEEeccccCCCCCC-eEEEEc-HHHHHHHHhhhccccc------------------CCCCHHHHHHH
Confidence 11 1123589999999999998888 888776 4333222111001110 11111 22333
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
.++++.+...+++++.++..++++++.+.|+++ ++++..++ ..+++.+.+..... + .
T Consensus 267 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~-------~ 324 (405)
T 2vi8_A 267 AVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQL--------------T-------G 324 (405)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC--------------C-------H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCCCC--------------C-------H
Confidence 455555444678899999999999999999988 89887543 46677776653110 0 1
Q ss_pred HHHHHHHHhcCcEEEEEeE-------ECCEeEEEEEccCC---CCCHHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHAV-------LGGIYAIRFAAGAT---LTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~~-------~~~~~~iRis~~~~---~~t~edi~~li~~l~~~~~~~ 304 (310)
.++.+.|.+.|.. +.+.. ....+.+|+|++.+ ..+++|+++++++|++++..+
T Consensus 325 ~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 325 KTAEKVLDEVGIT-VNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHHTEE-CEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHcCce-eccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 3566667666744 33321 11245799996631 367999999999999887554
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=153.45 Aligned_cols=224 Identities=10% Similarity=0.041 Sum_probs=148.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh--hhhhhcCCCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE--FRHFIDGVEGA 103 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~--~~~~~~~~~~~ 103 (310)
+|+++|+++|++.. +.+|++...+|++|.+.|+++|+++|++||+++++|++|+.+.+.... ..........+
T Consensus 173 ~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~ 247 (409)
T 3kki_A 173 NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREV 247 (409)
T ss_dssp TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGC
T ss_pred CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCC
Confidence 68999999998642 358888899999999999999999999999999999999765432110 00001111247
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 182 (310)
|+++.+++|+++.+ .|+++.+ +............+... .+.. ..+.++.++++.+ +.
T Consensus 248 di~~~s~sK~~~~~--gg~v~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~aa~~aal~~~--~~ 305 (409)
T 3kki_A 248 HFMTASLAKTFAYR--AGAIWCN-NEVNRCVPFISYPAIFS-----------------STLLPYEAAGLETTLEII--ES 305 (409)
T ss_dssp SEEEEESSSTTCSS--CEEEEES-SSGGGTHHHHCHHHHHS-----------------BCCCHHHHHHHHHHHHHH--HH
T ss_pred CEEEeecchhhCCC--ceEEEEC-HHHHHHHHHhCcCcccc-----------------CCCcHHHHHHHHHHHHHH--hc
Confidence 99999999999866 3555544 43332211111111111 1111 1222333444433 22
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
.+++.++..++.+++.+.|.++ ++++. +..+++.+.+... ....++.+.|.++|.
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~L~~~Gv 360 (409)
T 3kki_A 306 ADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDE----------------------RNTEKVRDYLESNGV 360 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESH----------------------HHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCH----------------------HHHHHHHHHHHHCCc
Confidence 3677888889999999999987 77665 3566777777542 122457777888875
Q ss_pred EEEEEe----EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 263 AYMTHA----VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 263 ~~~~~~----~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ +.+. ...+..++|++++ ..++++|+++++++|+++++.
T Consensus 361 ~-v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 361 F-GSVFCRPATSKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp E-CEEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred e-EeeeCCCCcCCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhc
Confidence 4 4332 1235689999966 578999999999999998765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-18 Score=152.49 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=156.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++++ .+++++|++++++ + .++++++++|++|.+.| +++|+++|++||+++++|
T Consensus 116 ~~~g~~---~~~~~~~~~~--~~~~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 183 (361)
T 3ftb_A 116 KKHGVS---VVFSYLDENM--CIDYEDIISKIDD-V------DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIID 183 (361)
T ss_dssp HHTTCE---EEEEECCTTS--CCCHHHHHHHTTT-C------SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCe---EEEeecCccc--CCCHHHHHHhccC-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEE
Confidence 445666 8999998754 6888999999875 3 37788899999999886 667888888999999999
Q ss_pred cccccccccChhhhhh-hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 81 AAYAGSACICPEFRHF-IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
++|+.+... ...... ........++..|++|+++.| ...|++++.++............+
T Consensus 184 e~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~----------------- 245 (361)
T 3ftb_A 184 EAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW----------------- 245 (361)
T ss_dssp CSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT-----------------
T ss_pred CcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC-----------------
Confidence 999765542 111000 011112346678999999743 456777656665543322111110
Q ss_pred eeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 159 QITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
....+..+++...+ ..++++++.++..++.+++.+.|+++|++. +. ++..+++.+.+...+
T Consensus 246 ------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---------- 308 (361)
T 3ftb_A 246 ------NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENIS---------- 308 (361)
T ss_dssp ------CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSSC----------
T ss_pred ------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCCC----------
Confidence 01223333333333 245678889999999999999999999998 65 556677777775421
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.++|. .+.+. .. .+.+++|+|+. ++++++.++++|+++.+.
T Consensus 309 -------------~~~l~~~l~~~gi-~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 309 -------------GEKLYDSLLKEDI-VIRRCCNFIGLDDSFVRFAIK----DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp -------------HHHHHHHHHTTTE-ECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHCCe-EEeeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHhc
Confidence 1457777877864 44432 22 23578999943 688999999999887653
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=162.85 Aligned_cols=247 Identities=9% Similarity=0.040 Sum_probs=157.9
Q ss_pred ceecCCCCCCEEEEecCC----CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCc
Q 046506 3 AQIVGIDVKNFRAIKTTK----SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGI 75 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~----~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~ 75 (310)
++..|.. ++.+|.+. +..+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+
T Consensus 143 ~~~~g~~---~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~ 213 (407)
T 3nra_A 143 VEFFEGE---MVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA 213 (407)
T ss_dssp HHHTTCE---EEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCE---EEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCC
Confidence 3455665 88999842 124689999999999763 447888889999999999 9999999999999
Q ss_pred EEEeecccccccccChhhhhhh--c-CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccc
Q 046506 76 WVHVDAAYAGSACICPEFRHFI--D-GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 76 ~l~vD~a~~~~~~~~~~~~~~~--~-~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
++++|++|+.+........... . .....++++.++||+++.| ..+|+++. ++..+.........+...
T Consensus 214 ~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~------- 285 (407)
T 3nra_A 214 TVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLR------- 285 (407)
T ss_dssp EEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSS-------
T ss_pred EEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccC-------
Confidence 9999999987554321111100 0 1123457889999999743 45677765 443332221110000000
Q ss_pred ccCCCCceeccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchh
Q 046506 152 VVDYKDWQITLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMD 229 (310)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~ 229 (310)
...+..+++...+ ..+.+++..++..++++++.+.|+++|++.+..+.....+.+.+.....
T Consensus 286 --------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-- 349 (407)
T 3nra_A 286 --------------AAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAV-- 349 (407)
T ss_dssp --------------SCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSS--
T ss_pred --------------CChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCC--
Confidence 0111122222222 2356788888999999999999999889887644444555444443110
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.|.++ |. ++.+.. . .+.+++|+|++ +++++|+.++++|++++++++
T Consensus 350 ------------~-------~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 350 ------------A-------PAEFVKILRLQAGV-VVTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp ------------C-------HHHHHHHHHHHHCE-ECEEGGGTCTTCTTBEEEECC---SCHHHHHHHHHHHHHHHHHHB
T ss_pred ------------C-------HHHHHHHHHHhCCE-EEeCchhhCCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHHhh
Confidence 0 13566666554 64 444322 1 24678999965 389999999999999887753
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-18 Score=153.60 Aligned_cols=230 Identities=14% Similarity=0.092 Sum_probs=152.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHh--CcEEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQF--GIWVH 78 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~--g~~l~ 78 (310)
+..|.. ++.+|.++ ++.+|+++|+++|++.. +.+|++++.+|++|.+.| +++|+++|++| |++++
T Consensus 127 ~~~g~~---~~~v~~~~--~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li 196 (367)
T 3euc_A 127 QFAGLE---FVGVPLRA--DFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVV 196 (367)
T ss_dssp HTTTCE---EEEEECCT--TSCCCHHHHHHHHHHHC-----CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEE
T ss_pred HHcCCe---EEEecCCC--CCCCCHHHHHHHhhccC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEE
Confidence 445665 89999987 35899999999998731 347778899999999854 77888889999 99999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
+|++|+.+.... ....... ...+++..|+||++....++|+++. ++............|.
T Consensus 197 ~De~~~~~~~~~--~~~~~~~-~~~~i~~~s~sK~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~---------------- 256 (367)
T 3euc_A 197 VDEAYQPFAQES--WMSRLTD-FGNLLVMRTVSKLGLAGIRLGYVAG-DPQWLEQLDKVRPPYN---------------- 256 (367)
T ss_dssp EECTTCCSSSCC--SGGGGGT-CTTEEEEEECCCTTSCSCCEEEEEE-CHHHHHHHGGGCCSSC----------------
T ss_pred EeCcchhhcccc--hHHHHhh-CCCEEEEecchhhcccccCceeeee-CHHHHHHHHHhCCCCC----------------
Confidence 999997543211 1111111 2355778899999433455677776 4444433211111100
Q ss_pred eeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 159 QITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
...+..+++...+. .++++++.++..++++++.+.|+++|++++. ++..+.+.+.+. .
T Consensus 257 -------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-~------------ 315 (367)
T 3euc_A 257 -------VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-D------------ 315 (367)
T ss_dssp -------CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS-C------------
T ss_pred -------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC-C------------
Confidence 11222223333332 4567889999999999999999999999864 556666666554 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE---CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVL---GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+.|. .+.+... ...+++|+|+. +++|+++++++|++++
T Consensus 316 ------------~~~l~~~l~~~gi-~v~~~~~~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 316 ------------AAQTFDRLLARKV-LIKNVSKMHPLLANCLRVTVS----TPEENAQFLEAFAASL 365 (367)
T ss_dssp ------------HHHHHHHHHTTTE-ECEECGGGCGGGTTEEEEECC----CHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHCCe-EEEECCccCCCCCCEEEEecC----CHHHHHHHHHHHHHHh
Confidence 1356677777765 4443221 13478999943 7999999999998864
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=160.20 Aligned_cols=247 Identities=13% Similarity=0.090 Sum_probs=158.1
Q ss_pred ecCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKTT-KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~-~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l~vD 80 (310)
..|.. ++.+|.+ +++.+.+|+++|+++|++. .+.+|++..++|++|.+ +++++|+++|++||+++++|
T Consensus 162 ~~g~~---~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~D 233 (421)
T 3l8a_A 162 LNDHR---LVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSD 233 (421)
T ss_dssp HTTEE---EEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HCCCE---EEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44555 8888886 4456789999999999742 15578888899999998 67999999999999999999
Q ss_pred cccccccccChhhhhhh---cCCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCC-ccccccccccccccCC
Q 046506 81 AAYAGSACICPEFRHFI---DGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNP-EYLKNKATESKQVVDY 155 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~---~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~ 155 (310)
++|+............. .+....+.+..+++|+++ ....+|+++++++... +.+.... .+..
T Consensus 234 e~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~-~~~~~~~~~~~~------------ 300 (421)
T 3l8a_A 234 EIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLR-RKFQYRQLANNQ------------ 300 (421)
T ss_dssp CTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHH-HHHHHHHHHTTC------------
T ss_pred ccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHH-HHHHHHHHhccc------------
Confidence 99976544321111100 011134577899999997 3456788887755443 2221100 0000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.++-.+...++.++++. +.+++++..++..++.+++.+.|+++|++.+..+....++.+.+.....
T Consensus 301 -----~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~-------- 366 (421)
T 3l8a_A 301 -----HEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAI-------- 366 (421)
T ss_dssp -----SCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTC--------
T ss_pred -----CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCC--------
Confidence 00111222333444442 5667889999999999999999988789988754333333355543100
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+ ..++.+.|.++..+.+.+.. . .+.+++|+++. +++++|+.+++.|++.++
T Consensus 367 ------~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 367 ------A-------QPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA---TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ------C-------TTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHC-
T ss_pred ------C-------HHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHh
Confidence 0 13566777655334554421 1 23579999955 589999999999987653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=158.29 Aligned_cols=251 Identities=9% Similarity=0.002 Sum_probs=158.6
Q ss_pred eecCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTT-KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~-~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|.+ +++.+.+|+++|+++|++. .+.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 131 ~~~g~~---~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 131 KNQERK---IIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HTTTCE---EEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHcCCE---EEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 345665 8888886 3334579999999999631 1557778888999999999 99999999999999999
Q ss_pred ecccccccccChhhhhhhcCC----CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPEFRHFIDGV----EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|++|+.+......... ...+ ...+++..+++|+++.| ..+|++++++++.+.........+...
T Consensus 203 De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~---------- 271 (399)
T 1c7n_A 203 DEIHFDLIMPGYEHTV-FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM---------- 271 (399)
T ss_dssp ECTTTTCBCTTCCCCC-GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC----------
T ss_pred EccccccccCCCCccc-HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccC----------
Confidence 9999865432211111 1111 12457788999998744 247888876554433221111011000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEE-EEEEcCCcchhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVV-CFRVSPSAVMDKLK 232 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v-~~~~~~~~~~~~~~ 232 (310)
+.-......+.++++. +.+.+++..++..++.+++.+.|++ +|++.+.. +..+++ .+.+.....
T Consensus 272 -------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 337 (399)
T 1c7n_A 272 -------PFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL-IEGTYLQWIDFRALKM----- 337 (399)
T ss_dssp -------CCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC-CSBSSEEEEECGGGCC-----
T ss_pred -------CCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec-CCceEEEEEEcccCCC-----
Confidence 0000112223333332 3567888888999999999999988 78887763 444444 455542100
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 233 TKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.|. +.|.....+.... +.+++|+|++. .+++++.+++.|++.+.++.+
T Consensus 338 ---------~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~---~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 338 ---------D-------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA---PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp ---------C-------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------C-------HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc---CHHHHHHHHHHHHHHHHHHHh
Confidence 0 135677776 5665443322211 34689999663 378999999999999887654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-18 Score=152.11 Aligned_cols=233 Identities=12% Similarity=0.101 Sum_probs=154.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD 80 (310)
++..|.. ++.+|.+++ +.+|+++|++++++. +.+|++++++|++|.+.|+++|.++|+.+ |+++++|
T Consensus 125 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D 193 (363)
T 3ffh_A 125 ALIEGAE---VREIPLLQD--GEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLD 193 (363)
T ss_dssp HHHHTCE---EEEEECCTT--SCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEE
T ss_pred HHHcCCE---EEEecCCCC--CCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 3456776 999999863 589999999999654 55788889999999999999999999888 9999999
Q ss_pred cccccccccChh--hhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPE--FRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~--~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+.. ... ...... ...-+++..+.+|+++.| ..+|++++ +++...........| .
T Consensus 194 e~~~~~~~-~~~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~----~----------- 255 (363)
T 3ffh_A 194 EAYIEYVT-PQPEKHEKLVR-TYKNLIITRTFSKIYGLASARVGYGIA-DKEIIRQLNIVRPPF----N----------- 255 (363)
T ss_dssp CTTGGGCS-SCCCCCGGGGG-TCTTEEEEEESSSTTCCSSCCCEEEEE-CHHHHHHHHHTCCSC----C-----------
T ss_pred CchHhhcC-ccccCHHHHhh-cCCCEEEEeechhhhcCchhceeeeec-CHHHHHHHHHhCCCC----C-----------
Confidence 99985543 110 000011 112346678999998633 33488877 444443322111110 0
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.-......+.++++ ..+++++..++..++.+++.+.|++++++++. ++..+++.+.+...
T Consensus 256 -----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~------------ 315 (363)
T 3ffh_A 256 -----TTSIGQKLAIEAIK--DQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLGIE------------ 315 (363)
T ss_dssp -----CBHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECSSC------------
T ss_pred -----CCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECCCC------------
Confidence 00011222333333 23667888999999999999999987799876 55566676666431
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.|.++|.....+..+...+++|+|+. +++|+++++++|+++
T Consensus 316 ------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 316 ------------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG----KEEDNSAVIALLEKL 362 (363)
T ss_dssp ------------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC----CHHHHHHHHHHHHHh
Confidence 14567777777743333222223579999943 799999999999875
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=154.34 Aligned_cols=235 Identities=13% Similarity=0.033 Sum_probs=152.3
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|.. ++.+|. +|+++|+++|++... .+.++++.+.+|++|.+.|+++|+++|++||+++++|++|+
T Consensus 142 ~~g~~---~~~~~~-------~d~~~l~~~l~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~ 208 (384)
T 1bs0_A 142 LSPSQ---LRRFAH-------NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHG 208 (384)
T ss_dssp TSSSE---EEEECT-------TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HcCCC---EEEeCC-------CCHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcc
Confidence 34554 666653 578999999975321 14577788889999999999999999999999999999997
Q ss_pred ccccc--ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACI--CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~--~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+.+. ...... ..+ ...|+++.|+||+++ |.| |+++++ ++.+.........|... .
T Consensus 209 ~~~~~~~~~~~~~-~~~-~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~~-----------------~ 266 (384)
T 1bs0_A 209 TGVIGEQGRGSCW-LQK-VKPELLVVTFGKGFG-VSG-AAVLCS-STVADYLLQFARHLIYS-----------------T 266 (384)
T ss_dssp TTTSSGGGCCHHH-HTT-CCCSEEEEESSSTTS-SCC-EEEEEC-HHHHHHHHHHCHHHHSS-----------------B
T ss_pred cceecCCCCchHH-hcC-CCCcEEEeeccchhh-ccC-cEEEeC-HHHHHHHHHhchhhhcC-----------------C
Confidence 65432 010011 111 248999999999987 556 777764 44433221111111111 0
Q ss_pred CCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 163 SRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
+.. ....++.++++.+...+.+++.++..++++++.+.|+++ ++++. ++..+++.+.+..
T Consensus 267 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~----------------- 327 (384)
T 1bs0_A 267 SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD----------------- 327 (384)
T ss_dssp CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES-----------------
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCEEEEEeCC-----------------
Confidence 001 122233444544421156788899999999999999987 78876 3455666666643
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.....++.+.|.++|. .+.+... .+.+.+|++++ ..++++++++++++|+++
T Consensus 328 -----~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 328 -----NSRALQLAEKLRQQGC-WVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -----HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCc-EEEeecCCCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 1112467777777764 4333221 23579999966 578999999999999875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=158.65 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=156.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++++.+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 142 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 142 VKFYGGK---PVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp HHHTTCE---EEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHcCCE---EEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3446666 88999875324679999999999653 457778888999999877 99999999999999999
Q ss_pred ecccccccccCh--hhhhhhcCCCCC-Ceeeeecccccccc-cceEEEEE-eCc----hhHHhhhccCCccccccccccc
Q 046506 80 DAAYAGSACICP--EFRHFIDGVEGA-DSFSLNAHKWFFTT-LDCCCLWV-KDP----SDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 80 D~a~~~~~~~~~--~~~~~~~~~~~~-D~~~~~~hK~l~~p-~g~g~l~v-~~~----~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
|++|+.+....+ .... .. .+. |+++.|+||+++.| ..+|++++ .++ ..+....... .+. ..
T Consensus 213 De~~~~~~~~~~~~~~~~-~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~-~~~--~~---- 282 (406)
T 1xi9_A 213 DEIYDLMTYEGEHISPGS-LT--KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLA-RIR--LC---- 282 (406)
T ss_dssp ECTTTTCBSSSCCCCHHH-HC--SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHH-HHT--CC----
T ss_pred EcCccccccCCCCCCHHH-cC--CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHH-Hhh--cC----
Confidence 999987654111 1111 11 235 77889999998733 22788873 344 3332221100 000 00
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEE-EEEcCC-cch
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVC-FRVSPS-AVM 228 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~-~~~~~~-~~~ 228 (310)
.-......+.++++. +.++++++.++..++.+++.+.|.++|++++.. +..+++. +.+... ..
T Consensus 283 ------------~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 347 (406)
T 1xi9_A 283 ------------PNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIEVGPWK- 347 (406)
T ss_dssp ------------SCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEECSCSCS-
T ss_pred ------------CCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEEecCccCCC-
Confidence 001122233334432 345678888999999999999999988988764 3444333 344420 00
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.+. +.|.....+..+. +.+++|+|+. +++++++.+++.|+++++++.
T Consensus 348 -------------~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~---~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 348 -------------N-------DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp -------------S-------HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHHC-
T ss_pred -------------C-------HHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHHHh
Confidence 0 135666665 5664333322221 2568999954 789999999999999887653
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=156.74 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=154.9
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++++|.++ ++.+|+++|++++++. +.+|+ .+|++|.+.|+++|+++|++||+++++|++
T Consensus 95 ~~~~g~~---~~~~~~~~--~~~~d~~~l~~~~~~~------~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~ 160 (374)
T 3uwc_A 95 IVQAGAT---PVLVDSEN--GYVIDPEKIEAAITDK------TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDAC 160 (374)
T ss_dssp HHHTTCE---EEEECBCT--TSSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCE---EEEEecCC--CCCcCHHHHHHhCCCC------ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCC
Confidence 3456776 89999984 4689999999998753 33444 667899999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecc--cccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+....... .+ ...|++++|+| |+++++...|+++.+++.......... ...... .+ ...
T Consensus 161 ~~~g~~~~~~~----~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~----~~~~~~-----~~--~~~ 224 (374)
T 3uwc_A 161 QTILGRINDKF----VG-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYR----NHGLIN-----RD--VCV 224 (374)
T ss_dssp TCTTCEETTEE----TT-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHT----BTTEEE-----TT--EES
T ss_pred CccCceeCCee----cc-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHH----hcCccc-----cC--ccc
Confidence 98665422111 11 13699999988 999764446666666554432221111 000000 00 000
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC-eEEecCCCc---eEEEEEEcCCcchhhhhhhhc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR-FEVVFPRHF---AVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~-~~v~~~~~~---~~v~~~~~~~~~~~~~~~~~~ 236 (310)
..+..+...++.+++.....++++++.++..++++++.+.|.++++ +++...+.. ..+.|.+...+
T Consensus 225 ~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 294 (374)
T 3uwc_A 225 EYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKY---------- 294 (374)
T ss_dssp SCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETT----------
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCC----------
Confidence 1111222233444444444567788899999999999999999887 877533321 11223332211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE------------------------CCEeEEEEEccCCCCCHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVL------------------------GGIYAIRFAAGATLTEERHVMV 292 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------------------------~~~~~iRis~~~~~~t~edi~~ 292 (310)
..++.+.|.++|.. +.+... .....+|++++ +++|++||++
T Consensus 295 -------------~~~l~~~L~~~gi~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~t~edi~~ 359 (374)
T 3uwc_A 295 -------------RDQLFQYLKDNGIE-VKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAH-PYLTEEEINY 359 (374)
T ss_dssp -------------HHHHHHHHHHTTBC-CBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCC-TTSCHHHHHH
T ss_pred -------------HHHHHHHHHHCCCc-cccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCC-CCCCHHHHHH
Confidence 13566777777753 222110 01278999955 6899999999
Q ss_pred HHHHHHHHHHH
Q 046506 293 AWTVVQEHLEA 303 (310)
Q Consensus 293 li~~l~~~~~~ 303 (310)
++++|++++++
T Consensus 360 ~~~~l~~~l~~ 370 (374)
T 3uwc_A 360 IIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-18 Score=166.18 Aligned_cols=271 Identities=12% Similarity=0.036 Sum_probs=163.5
Q ss_pred ceecCCCCCCEEEEecCCCC---CcccCHHHH-----HHHHHHH-HH-cCC-Cc-EEEEEeccCCcccccCChHHHHHHH
Q 046506 3 AQIVGIDVKNFRAIKTTKSS---SYGLSPDSL-----MAKINSD-VE-AGL-IP-LFLCATIGTTAITAVDTLKPLCDVA 70 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~---~~~id~~~L-----e~~i~~~-~~-~~~-~~-~~v~~~~~~~~~G~~~pl~~I~~l~ 70 (310)
+.+.|.. +++++.+.++ .+.+|+++| +++|++. .+ .+. .| .+++++++ |.+|.+.|+++|+++|
T Consensus 231 ~~l~Ga~---~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la 306 (730)
T 1c4k_A 231 LAMAGGR---PVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRI 306 (730)
T ss_dssp TTTTCCE---EEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHH
T ss_pred HHHCCCE---EEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHH
Confidence 3455665 7888775431 134788888 8888653 11 001 12 46777665 5799999999999999
Q ss_pred HHhCcEEEeecccccccccChhhh---hhhcCCCCCC----eeeeecccccccccceEEEEEeCchhHHhhhccCCcccc
Q 046506 71 KQFGIWVHVDAAYAGSACICPEFR---HFIDGVEGAD----SFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLK 143 (310)
Q Consensus 71 ~~~g~~l~vD~a~~~~~~~~~~~~---~~~~~~~~~D----~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~ 143 (310)
++||+++|||+||+++....+..+ .......++| +++.|+||++++|.++|+++++++.. . ....++.
T Consensus 307 ~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l-~----g~~~~i~ 381 (730)
T 1c4k_A 307 GHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI-K----GQLRYCD 381 (730)
T ss_dssp GGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG-T----TSTTCCC
T ss_pred HHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhh-c----CcccccC
Confidence 999999999999976544333222 1111012577 99999999999999999999988742 1 0011111
Q ss_pred ccccccccccCCCCceeccCCCc--chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCC------
Q 046506 144 NKATESKQVVDYKDWQITLSRRF--RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRH------ 214 (310)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~------ 214 (310)
... ++.....++.+.+. ..+++.++++.+..++..+++++..++++++++.|.+ ++|++++.+..
T Consensus 382 ~~~------~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~ 455 (730)
T 1c4k_A 382 HKH------FNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKW 455 (730)
T ss_dssp HHH------HHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEG
T ss_pred HHH------HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccc
Confidence 000 00000011112221 2234445666665544567788999999999999988 78999875421
Q ss_pred ------------------------------c---eE----EEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 215 ------------------------------F---AV----VCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 215 ------------------------------~---~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
. .+ +++..++.+. ..+.+... ..-...+.+.|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~---~~g~~~~~--------g~~~~~l~~~L 524 (730)
T 1c4k_A 456 EDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINP---ETGDYEDF--------GVPATIVANYL 524 (730)
T ss_dssp GGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEET---TTTEECSS--------CCCHHHHHHHH
T ss_pred cccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCccc---cccccccc--------CCCHHHHHHHH
Confidence 0 01 4444421000 00000000 00114567778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++|. ++... +...+|++++ +++|++++++|+++|+++.+.+
T Consensus 525 ~e~GI-~v~~~---~~~~ir~~~s-~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 525 RDHGI-IPEKS---DLNSILFLMT-PAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp HHTTC-CCSEE---CSSEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCc-EEEEC---CCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 77764 33322 3567899955 7899999999999999988765
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=158.87 Aligned_cols=246 Identities=14% Similarity=0.132 Sum_probs=157.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++++.+.+ +++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 143 ~~~~g~~---~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 212 (409)
T 2gb3_A 143 AKIAGVK---LIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIV 212 (409)
T ss_dssp HHHHTCE---EEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCE---EEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3456666 88999875323455 89999988653 457788888899999864 89999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|++|+.+..... ......++...|+++.|+||+++.| ..+|+++++++............+. .
T Consensus 213 Dea~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~---~------------ 276 (409)
T 2gb3_A 213 DEVYSEIVFRGE-FASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL---A------------ 276 (409)
T ss_dssp ECTTTTCBCSSC-CCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC---C------------
T ss_pred ECcccccccCCC-CCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC---C------------
Confidence 999987654221 1111222335789999999999644 2378888766334322211100000 0
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE-ecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEV-VFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.-......+.++++. +..+++++.++..++.+++.+.|+++ ++++ ..+.....+.+.+.+.+
T Consensus 277 ----~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------- 339 (409)
T 2gb3_A 277 ----PPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPVED----------- 339 (409)
T ss_dssp ----CCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSSSC-----------
T ss_pred ----CCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCCCC-----------
Confidence 000112222333322 46678888999999999999999887 7877 43333333444443211
Q ss_pred ccchhHHHHHHHHHHHHHHHHhc------CcEEEEEe-EE-----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 238 SLLSEEERINEFNRELLESINAS------GKAYMTHA-VL-----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~~~-~~-----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
..++.+.|.++ | +.+.+. .. .+.+++|+++. +++++++.++++|++.+++++
T Consensus 340 ------------~~~l~~~l~~~~~~~~~g-i~v~~g~~f~~~~~~~~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 340 ------------AEEFARWMLTDFNMDGET-TMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp ------------HHHHHHHHHHSCCBTTEE-EECEEGGGGCSSTTTTSSEEEEECC---SCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHhccccccCc-EEEeCchHhCCCCCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHHhh
Confidence 13566777666 5 444432 11 13579999955 789999999999999998775
Q ss_pred hc
Q 046506 306 SA 307 (310)
Q Consensus 306 ~~ 307 (310)
++
T Consensus 404 ~~ 405 (409)
T 2gb3_A 404 SS 405 (409)
T ss_dssp C-
T ss_pred hc
Confidence 43
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=159.32 Aligned_cols=243 Identities=11% Similarity=0.048 Sum_probs=150.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. +++++.+++ ++.+|+++|+++|++. +.+|+ .++++|.+.|+++|+++|++||+++++|++|
T Consensus 94 ~~~g~~---~~~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~ 160 (373)
T 3frk_A 94 SYTGAK---PIFVEPDIR-TYNIDPSLIESAITEK------TKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQ 160 (373)
T ss_dssp HHHSCE---EEEECEETT-TTEECGGGTGGGCCTT------EEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHcCCE---EEEEecccc-ccCcCHHHHHHhcCCC------CeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCc
Confidence 445776 899999864 4689999999999763 33444 4568999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeee--cccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLN--AHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+...... . .+ ...|++++| +||+++++...|+++.+++......... ....... .+. ...
T Consensus 161 ~~g~~~~~~--~--~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~----~~~g~~~-----~~~--~~~ 224 (373)
T 3frk_A 161 AHGSLYKGM--K--VG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKAL----SNYGSEK-----KYH--HIY 224 (373)
T ss_dssp CTTCEETTE--E--TT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHH----HBTTCSB-----TTB--CCS
T ss_pred ccCCEECCE--e--cc-ccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHH----HhcCccc-----CCc--ccc
Confidence 876542211 1 11 126888877 7799976344566665555433222110 0000000 000 001
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC---ceEEEEEEcCCcchhhhhhhhccc
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH---FAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
.+..+...++.+++.....++++++.++..++++++.+.|.+++ +.+...+. .+.+.|.+...+
T Consensus 225 ~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------ 291 (373)
T 3frk_A 225 KGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEK------------ 291 (373)
T ss_dssp CCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESS------------
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCC------------
Confidence 11122233344444444456778889999999999999999886 66643221 122223332211
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeE--E-------------C---------CEeEEEEEccCCCCCHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAV--L-------------G---------GIYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~-------------~---------~~~~iRis~~~~~~t~edi~~li 294 (310)
..++.+.|.++|.. +.+.. . . ....+|+++. +++|++||++++
T Consensus 292 -----------~~~l~~~L~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~t~~di~~~~ 358 (373)
T 3frk_A 292 -----------RDELQKYLNNNGIG-TLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIW-YGMKNEEIEYVI 358 (373)
T ss_dssp -----------HHHHHHHHHHTTBC-CBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCC-TTCCHHHHHHHH
T ss_pred -----------HHHHHHHHHHCCCC-cccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCC-CCCCHHHHHHHH
Confidence 13567777777753 22111 0 0 0278999955 789999999999
Q ss_pred HHHHHHH
Q 046506 295 TVVQEHL 301 (310)
Q Consensus 295 ~~l~~~~ 301 (310)
++|++..
T Consensus 359 ~~l~~~~ 365 (373)
T 3frk_A 359 DKINAWK 365 (373)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9998654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=157.03 Aligned_cols=245 Identities=13% Similarity=0.090 Sum_probs=155.8
Q ss_pred ceecCCCCCCEEEEecC--CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHHHhCcEE
Q 046506 3 AQIVGIDVKNFRAIKTT--KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAKQFGIWV 77 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~--~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~~~g~~l 77 (310)
++..|.. ++.+|.+ +++.+.+|+++|+++|++ +.++++++++|++|.+ +++++|+++|++||+++
T Consensus 131 ~~~~g~~---~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 200 (391)
T 4dq6_A 131 VKNNNRE---LIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKI 200 (391)
T ss_dssp HHHTTCE---EEECCCEECTTSCEECCHHHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCe---EEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEE
Confidence 3445665 8889987 445567999999999975 3478888899999999 66889999999999999
Q ss_pred EeecccccccccChhhhhhhcCC----CCCCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccc
Q 046506 78 HVDAAYAGSACICPEFRHFIDGV----EGADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
++|++|+.+......... ...+ ....++..|+||+++. ...+|+++.+++............+...
T Consensus 201 i~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------- 271 (391)
T 4dq6_A 201 ISDEIHSDIILKKHKHIP-MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIK-------- 271 (391)
T ss_dssp EEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCC--------
T ss_pred EeeccccccccCCCCccC-HHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCC--------
Confidence 999999765432211111 0111 0123778899999963 3457777776644432221110000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhh
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~ 231 (310)
..-.....++.++++. ..+.++++.++..++++++.+.|++ +|++++..+....++.+.+.....
T Consensus 272 ---------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 337 (391)
T 4dq6_A 272 ---------RNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGL---- 337 (391)
T ss_dssp ---------CCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCC----
T ss_pred ---------CCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCC----
Confidence 0000122233333432 3456788889999999999999987 789988744333333355543110
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINAS-GKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+ ..++.+.|.++ | +.+.+. .. .+.+++|+|++ +++++++.++++|++.+
T Consensus 338 ----------~-------~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 338 ----------S-------DEELESILVQKGK-VALNQGNSFGIGGSGYQRINLA---CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ----------C-------HHHHHHHHHHTTC-EECEEGGGGCTTCTTEEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred ----------C-------HHHHHHHHHHhCC-EEeeCchhhCCCCCCeEEEEEc---CCHHHHHHHHHHHHHHh
Confidence 0 14577778777 6 444432 22 23578999955 58899999999998764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=151.26 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=155.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~vD 80 (310)
++..|.. ++.+|.+++ +.+|+++|+++|++.. .+.+|++++++|++|.+.|++++.++|+. ||+++++|
T Consensus 109 ~~~~g~~---~~~~~~~~~--~~~d~~~l~~~l~~~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D 179 (354)
T 3ly1_A 109 AKIAGMK---VTKVKMLDN--WAFDIEGLKAAVAAYS----GPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVD 179 (354)
T ss_dssp HHHTTCE---EEEECCCTT--SCCCHHHHHHHHHTCS----SCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEE
T ss_pred HHHcCCE---EEEecCCCC--CCCCHHHHHHHhccCC----CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEe
Confidence 3456666 899999864 5899999999997311 25678888999999999999888888887 99999999
Q ss_pred cccccccccChh--hhhhhcCCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPE--FRHFIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~--~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+...... ...........++++.|+||+++ ...++|+++. ++............+
T Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~---------------- 242 (354)
T 3ly1_A 180 EAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA-HPTVIALMGRYVAGE---------------- 242 (354)
T ss_dssp CTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC-CHHHHHHHGGGTTCS----------------
T ss_pred ccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec-CHHHHHHHHHhcCCC----------------
Confidence 999765433210 01111111135588899999997 4456787766 444433221111110
Q ss_pred ceeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
....+..+++...+ ..+.++++.++..++++++.+.|.++ ++.+. ++..+++.+.+...
T Consensus 243 -------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~~----------- 302 (354)
T 3ly1_A 243 -------KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVVP----------- 302 (354)
T ss_dssp -------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSSC-----------
T ss_pred -------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCCC-----------
Confidence 01222233333333 23567888899999999999999876 77765 44566666665431
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.|.+.|.. +.+......+++|+|+. +++|+++++++|+++++
T Consensus 303 -------------~~~~~~~l~~~gi~-v~g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 303 -------------LKDYQTHMADAGVL-IGRAFPPADNWCRISLG----TPQEMQWVADTMREFRK 350 (354)
T ss_dssp -------------HHHHHHHHHHTTEE-CCCCCTTCTTEEEEECC----CHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCEE-EeecCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHH
Confidence 13566777777743 33222234678999943 68999999999998765
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=153.71 Aligned_cols=257 Identities=12% Similarity=0.064 Sum_probs=161.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++++.+.+|+++|+++|++. +.++++++++|++|.+.| +++|+++|++||+++++
T Consensus 145 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 215 (416)
T 1bw0_A 145 CKAYGIG---MHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 215 (416)
T ss_dssp HHHTTCE---EEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHcCcE---EEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3445666 88899876434679999999998653 447788888999999999 99999999999999999
Q ss_pred ecccccccccCh----hhhhhhcCCC--CCCeeeeecccccccc-cceEEEEEeCc-hhHHhhhccCCcccccccccccc
Q 046506 80 DAAYAGSACICP----EFRHFIDGVE--GADSFSLNAHKWFFTT-LDCCCLWVKDP-SDLVNSLSTNPEYLKNKATESKQ 151 (310)
Q Consensus 80 D~a~~~~~~~~~----~~~~~~~~~~--~~D~~~~~~hK~l~~p-~g~g~l~v~~~-~~~~~~~~~~~~y~~~~~~~~~~ 151 (310)
|++|+...+... .... ...+. .-++++.+++|+++.| ..+|+++++++ ..+.........+...
T Consensus 216 De~~~~~~~~g~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~------- 287 (416)
T 1bw0_A 216 DEIYAGMVFKGKDPNATFTS-VADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML------- 287 (416)
T ss_dssp ECTTTTCBCCSSCTTCCCCC-TTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH-------
T ss_pred EccccccccCCCCCCCCccC-HHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhcc-------
Confidence 999976433221 1111 11111 1235678999998765 24788888765 2221111000000000
Q ss_pred ccCCCCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhh
Q 046506 152 VVDYKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~ 230 (310)
..+.. ....++.++++....+++++..++..++.+++.+.|+++|++.+..+...+.+.+.+......
T Consensus 288 ---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 356 (416)
T 1bw0_A 288 ---------VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-- 356 (416)
T ss_dssp ---------HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS--
T ss_pred ---------ccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcC--
Confidence 00001 122333444543346778899999999999999999998899876554455666666421000
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. ..+ ..++.+.+. +.|.....+......+++|+|+. +++++++.+++.|.+++++.+
T Consensus 357 ------~--~~~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~---~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 357 ------D--IKT-------DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT---RPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp ------S--CCS-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHHHHB
T ss_pred ------C--CCC-------HHHHHHHHHHHCCEEEecccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHhh
Confidence 0 000 134556664 56654433222223468999963 679999999999998887643
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=159.85 Aligned_cols=250 Identities=12% Similarity=0.120 Sum_probs=154.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|.. +++++++++ ++.+|+++|+++|++. +.+|+ .++++|.+.|+++|+++|++||+++++|++
T Consensus 113 ~~~~g~~---~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a 179 (391)
T 3dr4_A 113 VTYCGAT---PVLVDNDPR-TFNLDAAKLEALITPR------TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAA 179 (391)
T ss_dssp HHHTTCE---EEEECBCTT-TCSBCGGGSGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHCCCE---EEEEecCcc-ccCcCHHHHHHhcCCC------ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECc
Confidence 3455666 899999864 4689999999998653 33444 356889999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|+.+....+... ..+.++++++++.||+++++ ..|+++.+++.......... .+-..... .+ +....
T Consensus 180 ~~~g~~~~~~~~---~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~-~~g~~~~~------~~--~~~~~ 246 (391)
T 3dr4_A 180 EAVGATYRGKKS---GSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLR-GQGMDPNR------RY--WFPIV 246 (391)
T ss_dssp TCTTCEETTEET---TSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHH-BTTCCTTS------TT--CCSSC
T ss_pred ccccceECCeee---cccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHH-hcCCCCCC------cc--ccccc
Confidence 987655433211 11223555566688999764 35555555553322211100 00000000 00 00011
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--C-----CceEEEEEEcCCcchhhhhhhh
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--R-----HFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~-----~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
+..+....+.+++......+++++.++..++++++.+.|.++ ++++..+ + ...++.+.+....
T Consensus 247 g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~--------- 316 (391)
T 3dr4_A 247 GFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL--------- 316 (391)
T ss_dssp CCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC---------
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc---------
Confidence 222333444445444445678888999999999999999988 8877654 2 1224555554310
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--------------------CCEeEEEEEccCCCCCHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL--------------------GGIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------------------~~~~~iRis~~~~~~t~edi~~li~ 295 (310)
.....++.+.|.++|......... .....+|+++. +.+|+|||+++++
T Consensus 317 -----------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~t~edi~~~~~ 384 (391)
T 3dr4_A 317 -----------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTH-AGLTEADIDRVIA 384 (391)
T ss_dssp -----------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCC-TTCCHHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCC-CCCCHHHHHHHHH
Confidence 000146777787887543322100 01468999955 7899999999999
Q ss_pred HHHHH
Q 046506 296 VVQEH 300 (310)
Q Consensus 296 ~l~~~ 300 (310)
+|+++
T Consensus 385 ~l~~~ 389 (391)
T 3dr4_A 385 ALDQV 389 (391)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 99864
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=155.64 Aligned_cols=235 Identities=11% Similarity=0.019 Sum_probs=149.9
Q ss_pred EEEEecCC--CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc-CChHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTK--SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-DTLKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~--~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~pl~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.++.++ +....+|+++++ |++. +.+|++++++|.+|.+ .|+++| +|++++||++|+.+..+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~~~--i~~~------t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~ 182 (362)
T 2c0r_A 117 THVAASSEASNYMTLPKLQEIQ--LQDN------AAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRP 182 (362)
T ss_dssp EEEEEECGGGTTCSCCCGGGCC--CCTT------EEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSC
T ss_pred eEEEecccccccccCCCHHHcc--cCCC------cCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCc
Confidence 88998873 111235666654 4332 5688999999999994 889987 89999999999877654
Q ss_pred ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cch
Q 046506 90 CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRS 168 (310)
Q Consensus 90 ~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (310)
.+. ...|++++++|||++ |.|+|+++++++ .+.......+ ++..... ... .....++.+ +..
T Consensus 183 ~~~--------~~~d~~~~s~~K~~g-~~G~G~l~~~~~-~~~~l~~~~~-~~~~~~~----~~~--~~~~~~t~~~~~~ 245 (362)
T 2c0r_A 183 FDL--------NQFGLVYAGAQKNLG-PSGVTVVIVRED-LVAESPKHLP-TMLRYDT----YVK--NNSLYNTPPSFGI 245 (362)
T ss_dssp CCG--------GGCSEEEEETTTTTC-CSSCEEEEEEGG-GSSSCCTTSC-GGGCHHH----HHH--TTTCSSCCCHHHH
T ss_pred cch--------hHCcEEEEecccccc-CcCcEEEEEcHH-HHhhccccCc-hHHhHHH----Hhh--ccCcCCCchHHHH
Confidence 321 124999999999996 778999998765 3222111111 1110000 000 000011111 223
Q ss_pred HHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCe-EEecCC---CceEEEEEEcCCcchhhhhhhhccccchhH
Q 046506 169 LKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRF-EVVFPR---HFAVVCFRVSPSAVMDKLKTKYENSLLSEE 243 (310)
Q Consensus 169 ~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (310)
.++.++++.+... +++++.++..++++++.+.|++++++ ++..++ ...+++|.+..
T Consensus 246 ~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 306 (362)
T 2c0r_A 246 YMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS------------------- 306 (362)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-------------------
Confidence 4555666655444 78999999999999999999988546 775322 34566676543
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 244 ERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 244 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.....++.+.|.+.|.. +.+.. ...+.+|+|+. .++++||+++++++|++++++
T Consensus 307 ---~~~~~~~~~~L~~~gi~-~~~g~-~~~~~iRis~~-~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 307 ---EELEKEFVKASEQEGFV-GLKGH-RSVGGLRASIY-NAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ---HHHHHHHHHHHHHTTEE-SCBCC-TTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHCCCe-eccCC-CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 11124667777777753 32211 11346999976 468899999999999988764
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=149.54 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=148.6
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.+|.+ |+++|+++|++. +.+|++++.+|++|.+.|+++|+++|++||+++++|++|+
T Consensus 114 ~~g~~---~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~ 177 (386)
T 1cs1_A 114 RGCYR---VLFVDQG-------DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFL 177 (386)
T ss_dssp TTSCE---EEEECTT-------CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred hcCCE---EEEeCCC-------CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 34554 6666652 789999999753 4478889999999999999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccce--EEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC--CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+....+. . .++|+++.++||++++|.+. |+++++++......... ....
T Consensus 178 ~~~~~~~~------~-~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~----~~~~----------------- 229 (386)
T 1cs1_A 178 SPALQNPL------A-LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW----ANNI----------------- 229 (386)
T ss_dssp CTTTCCGG------G-GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH----HHHH-----------------
T ss_pred ccccCCcc------c-cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHH----HHhc-----------------
Confidence 77654321 1 14899999999999998874 88887764443222110 0000
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-C----------------CCceEEEEEEcCC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-P----------------RHFAVVCFRVSPS 225 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~----------------~~~~~v~~~~~~~ 225 (310)
+.....+..++++..+ +.+..+.++..++++++.+.|++++.+.-.. + ...++++|.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (386)
T 1cs1_A 230 GVTGGAFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD 307 (386)
T ss_dssp TCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC
T ss_pred CCCCCHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC
Confidence 0001222233333222 3456677778888999999998877664321 1 1267888877542
Q ss_pred cchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC---------------------------CEeEEEE
Q 046506 226 AVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG---------------------------GIYAIRF 278 (310)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---------------------------~~~~iRi 278 (310)
...+.+.+.+.|.+. .+...+ ..+++|+
T Consensus 308 ------------------------~~~~~~~l~~~gi~~-~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRi 362 (386)
T 1cs1_A 308 ------------------------EQTLRRFLGGLSLFT-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRI 362 (386)
T ss_dssp ------------------------HHHHHHHHHTCSSSE-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEE
T ss_pred ------------------------HHHHHHHHHhCCcce-EcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEE
Confidence 124555666666533 211000 1379999
Q ss_pred EccCCCCCHHHHHHHHHHHHHH
Q 046506 279 AAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 279 s~~~~~~t~edi~~li~~l~~~ 300 (310)
|+. ..+++++|+.+.++|+++
T Consensus 363 s~~-~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 363 STG-IEDGEDLIADLENGFRAA 383 (386)
T ss_dssp ECC-SSCHHHHHHHHHHHHHHH
T ss_pred EEc-cCCHHHHHHHHHHHHHHh
Confidence 977 578899999999888765
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=158.19 Aligned_cols=236 Identities=13% Similarity=0.036 Sum_probs=150.9
Q ss_pred EEEEecCCCCCcccCHHHHHH-HHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccCh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMA-KINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICP 91 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~-~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~ 91 (310)
++.+|+++. .+.+|+++|++ +|++. +.+|++++++|++|.+.| +++++||+++++|++|+.+..+.+
T Consensus 116 ~~~v~~~~~-~~~~d~~~l~~~~i~~~------~k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~~ 183 (360)
T 1w23_A 116 THIAASTKA-NSYQSIPDFSEFQLNEN------DAYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPLK 183 (360)
T ss_dssp EEEEEECGG-GTSCSCCCGGGCCCCTT------EEEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCCC
T ss_pred eEEeecccc-cCcCCccchHhhccCCC------CCEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCcC
Confidence 899999752 23689999998 87543 568888899999999866 333489999999999987765432
Q ss_pred hhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC-C-cchH
Q 046506 92 EFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR-R-FRSL 169 (310)
Q Consensus 92 ~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 169 (310)
. . ..|++++++||+++ |.|+|+++++++ .+.......+.++.... .. ......+. . ....
T Consensus 184 ~-----~---~~di~~~s~sK~~~-~~G~G~~~~~~~-~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~ 245 (360)
T 1w23_A 184 V-----N---QFGMIYAGAQKNLG-PSGVTVVIVKKD-LLNTKVEQVPTMLQYAT-----HI---KSDSLYNTPPTFSIY 245 (360)
T ss_dssp G-----G---GCSEEEEETTTTTS-CTTCEEEEEEHH-HHCSCCTTCCGGGCHHH-----HH---HTTTCSSCCCHHHHH
T ss_pred c-----c---cCCEEEEEcccccC-CCCcEEEEEcHH-HHhhcccCCcchhhhhh-----hh---hccCCCCCCCHHHHH
Confidence 1 1 13899999999886 768999988754 33221111111110000 00 00001111 1 1223
Q ss_pred HHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCCCe-EEecCC--Cce-EEEEEEcCCcchhhhhhhhccccchhHH
Q 046506 170 KLWFVLRNYGVA-NLRHFLRSHVNMAKLFERLVGSDKRF-EVVFPR--HFA-VVCFRVSPSAVMDKLKTKYENSLLSEEE 244 (310)
Q Consensus 170 ~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~--~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
++.++++.+... +++++.++..++++++.+.|++++++ .+..++ ..+ ++++.+.+.
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 306 (360)
T 1w23_A 246 MLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------------------- 306 (360)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH-------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC-------------------
Confidence 445556555444 68899999999999999999988765 554222 334 677766431
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 245 RINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 245 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
....++.+.|.+.|... .+.. ...+.+|+|++ ++++++++++++++|++++++
T Consensus 307 ---~~~~~~~~~l~~~gi~~-~~~~-~~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 307 ---ELNQQFLAKAKEQGFVG-LNGH-RSVGGCRASIY-NAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp ---HHHHHHHHHHHHTTEES-CBCC-TTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHCCeee-ecCC-CCCCeEEEEec-CCCCHHHHHHHHHHHHHHHhh
Confidence 11235666677777533 2211 12467999966 578999999999999987653
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=156.88 Aligned_cols=244 Identities=11% Similarity=0.130 Sum_probs=155.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+.+.+|+++|+++|++. +.+|+++.++|++|.+.| +++|+++|++||+++++|
T Consensus 123 ~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D 193 (375)
T 3op7_A 123 KSLGAE---VDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD 193 (375)
T ss_dssp HHTTCE---EEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHcCCE---EEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 445665 88999875445679999999999753 447788888999999999 999999999999999999
Q ss_pred ccccccccc-ChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 81 AAYAGSACI-CPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 81 ~a~~~~~~~-~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
++|+.+... ...... ....+.+..+.+|+++.| ..+|+++. +++.... +.....+..
T Consensus 194 e~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~-~~~~~~~~~--------------- 252 (375)
T 3op7_A 194 EVYRSFSELDVPSIIE----VYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDI-LRDYRDYTM--------------- 252 (375)
T ss_dssp CCSCCCSSSCCCCHHH----HCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHH-HTTTGGGTT---------------
T ss_pred cccccccccCCCchhh----hcCCEEEEeEChhhcCCcccceEEEEe-CHHHHHH-HHHHHhhhc---------------
Confidence 999765432 111111 113557788999999744 34577765 5544432 211101000
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
+. +.......+..+++. ....+++..++..++++.+.+.|++.+++.+..+.....+.+.+....
T Consensus 253 -~~-~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------ 317 (375)
T 3op7_A 253 -IC-AGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM------------ 317 (375)
T ss_dssp -SC-CCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS------------
T ss_pred -cC-CCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC------------
Confidence 00 001112222233332 234566777777889999999999888998775544444445554321
Q ss_pred cchhHHHHHHHHHHHHHHH-HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 239 LLSEEERINEFNRELLESI-NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++...+ .+.|.....+......+++|++++. ++++++.+++.|++.+.++.
T Consensus 318 ---~-------~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~---~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 318 ---P-------MEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFAC---EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp ---C-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCS---CHHHHHHHHHHHHHHHGGGC
T ss_pred ---C-------HHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHHh
Confidence 0 13455555 3566543333323335789999553 45899999999999887653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-18 Score=157.25 Aligned_cols=258 Identities=13% Similarity=0.067 Sum_probs=157.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.+++ .+.+|+++|+++|... .+.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 150 ~~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 150 CRILGQK---FESFDLFEY-RGEKLREKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHTCC---CEEEEGGGG-CTTHHHHHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCE---EEEEeecCC-CCccCHHHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 3456776 999999754 4679999999999321 1447777888999999987 77789999999999999
Q ss_pred ecccccccccCh-hh-------hhhhcCCCCCCeeeeecccccc-cccceEEEEEeCchhHH-hhhccCCcccccccccc
Q 046506 80 DAAYAGSACICP-EF-------RHFIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLV-NSLSTNPEYLKNKATES 149 (310)
Q Consensus 80 D~a~~~~~~~~~-~~-------~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~-~~~~~~~~y~~~~~~~~ 149 (310)
|++|+.+..... .. .. .......++++.|+||+++ ....+|+++++ +..+. ..-...+.+......
T Consensus 221 De~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 296 (437)
T 3g0t_A 221 DLAYFGMDFRKDYSHPGEPLYQPS-VANYTDNYILALSSSKAFSYAGQRIGVLMIS-GKLYEREYPDLEESFGRLRFG-- 296 (437)
T ss_dssp ECTTTTCCTTSCCCSTTSSCCCCC-GGGTCSCEEEEEESTTTTSCGGGCCEEEEEC-HHHHHCBCGGGHHHHSCSBHH--
T ss_pred EcchhhcccCCCcCcccccchhhc-cCCCCCcEEEEEcCccCCCCccceeEEEEEC-HHHhhhhhhcccccccccchh--
Confidence 999975433210 00 00 1111246688999999987 33457888765 33332 200000000000000
Q ss_pred ccccCCCCceeccCCCcchHHHHHHHHHhCHH--H---HHHHHHHHHHHHHHHHHHHcCCCCeEEe------cC-CCceE
Q 046506 150 KQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA--N---LRHFLRSHVNMAKLFERLVGSDKRFEVV------FP-RHFAV 217 (310)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---~~~~~~~~~~~a~~l~~~L~~~~~~~v~------~~-~~~~~ 217 (310)
... ..............+..+++...+... + ++++.++..++.+++.+.|+++ ++++. .+ ....+
T Consensus 297 ~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 373 (437)
T 3g0t_A 297 EAL--SSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFY 373 (437)
T ss_dssp HHH--HTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSE
T ss_pred HHH--HHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEE
Confidence 000 000000000011223333333333222 2 7888999999999999999998 89887 34 45666
Q ss_pred EEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-C-C-EeEEEEEccCCCCCHHHHHHHH
Q 046506 218 VCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL-G-G-IYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 218 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~-~-~~~iRis~~~~~~t~edi~~li 294 (310)
+.+.+.+.+ ..++.+.|.++|. .+.+... . . .+.+|+|++ ++++++++.++
T Consensus 374 ~~~~~~~~~-----------------------~~~l~~~L~~~gi-~v~~~~~~~~~~~~~iRis~~--~~~~e~i~~~~ 427 (437)
T 3g0t_A 374 FTVGYKGMD-----------------------SSKLIEKFVRYGM-CAITLKTTGSKRNEAMRICTS--LLPESQFPDLE 427 (437)
T ss_dssp EEEEETTCC-----------------------HHHHHHHHHHTTE-ECEESTTTTCCCTTCEEEECS--SSCGGGHHHHH
T ss_pred EEEecCCCC-----------------------HHHHHHHHHHcCe-EEeeccccCCCCCCEEEEEEe--cCCHHHHHHHH
Confidence 767665321 1356777777764 4443321 1 1 167999966 35899999999
Q ss_pred HHHHHHHH
Q 046506 295 TVVQEHLE 302 (310)
Q Consensus 295 ~~l~~~~~ 302 (310)
++|+++.+
T Consensus 428 ~~l~~~~~ 435 (437)
T 3g0t_A 428 KRLQMLNA 435 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=155.13 Aligned_cols=262 Identities=10% Similarity=0.045 Sum_probs=152.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. ++.+|++++ ++.+|+++|+++|++. +.+|++ ++++|.+.|+++|+++|++||+++++|++|
T Consensus 100 ~~~g~~---~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~ 166 (418)
T 2c81_A 100 LNVNAL---PVFVDVEAD-TYCIDPQLIKSAITDK------TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQ 166 (418)
T ss_dssp HHTTCE---EEEECBCTT-TCSBCHHHHGGGCCTT------EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCE---EEEEecCCC-CCCcCHHHHHHhhCCC------CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcc
Confidence 445666 899999863 4689999999999653 334544 347899999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccc-ccccCCCCc----
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATES-KQVVDYKDW---- 158 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~---- 158 (310)
+.+..... .. ...+..++++++++||+++. ..+|+++.+++..+....... .+........ .....+.+.
T Consensus 167 ~~~~~~~~--~~-~~~~~~~~~~s~s~~K~~~~-g~~g~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 241 (418)
T 2c81_A 167 SHGSVWNN--QR-AGTIGDIGAFSCQQGKVLTA-GEGGIIVTKNPRLFELIQQLR-ADSRVYCDDSSELMHGDMQLVKKG 241 (418)
T ss_dssp CTTCEETT--EE-TTSSSSEEEEECCTTSSSCS-SSCEEEEESCHHHHHHHHHHH-BTTEEECSCGGGCCTTCBSEEECC
T ss_pred cccCccCC--Ee-cccccceEEEeccCCcccCC-CCeEEEEECCHHHHHHHHHHH-HhCccccccccccccchhhccccc
Confidence 87753211 11 11122355666666999976 355555554554332221100 0000000000 000001000
Q ss_pred e-eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc------eEEEEEEcCCcchhhh
Q 046506 159 Q-ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF------AVVCFRVSPSAVMDKL 231 (310)
Q Consensus 159 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~------~~v~~~~~~~~~~~~~ 231 (310)
. +..+.+...+. +++.....++++++.++..++++++.+.|.++|++++..++.. .++.+.+.+....
T Consensus 242 ~~~g~~~~~~~~~--aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 316 (418)
T 2c81_A 242 DIQGSNYCLSEFQ--SAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFG--- 316 (418)
T ss_dssp SSCCCBCCCCHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTT---
T ss_pred cccCcCCCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccccc---
Confidence 0 00111122222 2222222345778888889999999999999999998754432 2455666520000
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHhc-CcE---EEEEeEE----------------------------CC-------
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINAS-GKA---YMTHAVL----------------------------GG------- 272 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~---~~~~~~~----------------------------~~------- 272 (310)
..+ ..++.+.|.++ |.. ...+... ..
T Consensus 317 --------~~~-------~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (418)
T 2c81_A 317 --------GLN-------ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA 381 (418)
T ss_dssp --------TCC-------HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH
T ss_pred --------ccC-------HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHH
Confidence 000 13566777777 754 2221100 00
Q ss_pred -EeEEEEEccCCCC-CHHHHHHHHHHHHHHHHHH
Q 046506 273 -IYAIRFAAGATLT-EERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 273 -~~~iRis~~~~~~-t~edi~~li~~l~~~~~~~ 304 (310)
...||++++ +++ |+|||++++++|+++++.+
T Consensus 382 ~~~~lrl~~~-~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 382 SGQSIVIHHA-ILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHEEEEEGG-GGGSCHHHHHHHHHHHHHHHHTT
T ss_pred HhCEEEecCC-ccCCCHHHHHHHHHHHHHHHHhh
Confidence 258999966 689 9999999999999987654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=151.76 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=145.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|+. +++++. .|+++|+++|++. +.+|++++++|++|.+.|+++|+++|++||+++|+|++|
T Consensus 126 ~~~g~~---~~~~~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~ 189 (398)
T 1gc0_A 126 GEFGVK---LRHVDM-------ADLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 189 (398)
T ss_dssp GGGTCE---EEEECT-------TCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTT
T ss_pred HHcCCE---EEEECC-------CCHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCC
Confidence 345555 666654 2789999998753 568888999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....+. . .++|+++.|+||++++|.+ .|+++.+++ .+...+.....++...
T Consensus 190 ~~~~~~~~~------~-~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~---------------- 245 (398)
T 1gc0_A 190 CTPYLQRPL------E-LGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTGA---------------- 245 (398)
T ss_dssp THHHHCCGG------G-GTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTCC----------------
T ss_pred cccccCCch------h-hCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCCC----------------
Confidence 877653321 1 1589999999999998876 577776544 3322221100000000
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE--------------ecC---CCceEEEEEEcC
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEV--------------VFP---RHFAVVCFRVSP 224 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v--------------~~~---~~~~~v~~~~~~ 224 (310)
.......++++..+ +.+..++++..++++.+.+.|.+++++.- ..+ ...++++|.+.+
T Consensus 246 ---~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (398)
T 1gc0_A 246 ---VLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 320 (398)
T ss_dssp ---CCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred ---CCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence 01233344444333 34567778888888888888887665532 111 246788887754
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE------------EeE------------ECC--EeEEEE
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMT------------HAV------------LGG--IYAIRF 278 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~------------~~~------------~~~--~~~iRi 278 (310)
. . ......+.+.+..... +.. ..+ .+.||+
T Consensus 321 ~---------------------~---~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRi 376 (398)
T 1gc0_A 321 G---------------------I---GAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRL 376 (398)
T ss_dssp H---------------------H---HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEE
T ss_pred C---------------------H---HHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEE
Confidence 1 1 1222333333332211 100 001 379999
Q ss_pred EccCCCCCHHHHHHHHHHHHHH
Q 046506 279 AAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 279 s~~~~~~t~edi~~li~~l~~~ 300 (310)
|+. ..+++++|+.+.++|+++
T Consensus 377 s~g-~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 377 SVG-LEDIDDLLADVQQALKAS 397 (398)
T ss_dssp ECC-SSCHHHHHHHHHHHHHHH
T ss_pred EeC-cCCHHHHHHHHHHHHHhc
Confidence 977 589999999999999865
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=151.32 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=154.8
Q ss_pred eecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|.+++ +.+.+|+++|+++|++. .+.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 129 ~~~g~~---~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 129 EGNQRT---VMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHTTCE---EEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHCCCE---EEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 445665 888998754 24569999999999642 1457777888999999977 88999999999999999
Q ss_pred ecccccccccChhhhhhhcCCC-CC-Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCC-ccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVE-GA-DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNP-EYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~-~~-D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~ 155 (310)
|++|+.+......... ...+. .. |. ..++||+++.| ..+|+++++++........... .+.
T Consensus 201 De~~~~~~~~g~~~~~-~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~------------- 265 (390)
T 1d2f_A 201 DEIHMDMVWGEQPHIP-WSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDG------------- 265 (390)
T ss_dssp ECTTTTCBCSSSCCCC-GGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSC-------------
T ss_pred EccccccccCCCCCcC-HHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcc-------------
Confidence 9999875543211111 11111 12 56 89999999743 3468888766544322211100 000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEE-EEEEcCCcchhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVV-CFRVSPSAVMDKLKT 233 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v-~~~~~~~~~~~~~~~ 233 (310)
+...-.....++.++++. +.+.+++..++..++.+++.+.|++ +|++++. ++..+++ .+.+.....
T Consensus 266 ----~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~------ 333 (390)
T 1d2f_A 266 ----LSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-IPQSTYLAWLDLRPLNI------ 333 (390)
T ss_dssp ----CCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-CCSBCSEEEEECGGGCC------
T ss_pred ----cCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe-cCCccEEEEEEccccCC------
Confidence 000000112223334432 3556788888999999999999988 7888765 3444444 455543100
Q ss_pred hhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESIN-ASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.|. +.|. .+.+. .. .+.+++|+|++. ++++++.+++.|++.+.++
T Consensus 334 --------~-------~~~l~~~l~~~~gi-~v~~g~~f~~~~~~~~Ris~~~---~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 334 --------D-------DNALQKALIEQEKV-AIMPGYTYGEEGRGFVRLNAGC---PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp --------C-------HHHHHHHHHHTTCE-ECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHHHH
T ss_pred --------C-------HHHHHHHHHHHcCE-EeeCccccCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHhh
Confidence 0 135677777 4564 44432 11 134689999663 4789999999998887654
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=154.47 Aligned_cols=236 Identities=12% Similarity=0.064 Sum_probs=148.8
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhh
Q 046506 14 RAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEF 93 (310)
Q Consensus 14 ~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~ 93 (310)
+.++.++ .+.+|+++|+++|++.+ +.+|+++.+++ |...|+++|+++|++||+++++|++|+.+......+
T Consensus 146 ~~~~~~~--~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~ 216 (420)
T 3gbx_A 146 VPYGIDE--SGKIDYDEMAKLAKEHK-----PKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVY 216 (420)
T ss_dssp EEEEECT--TCSCCHHHHHHHHHHHC-----CSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSS
T ss_pred EeccCCc--cCCcCHHHHHHHHHhcC-----CeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccC
Confidence 3455553 45899999999998741 34666655443 568899999999999999999999987665432211
Q ss_pred hhhhcCCCCCCeeeeecccccccccceEEEEEeCc--hhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHH
Q 046506 94 RHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDP--SDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLK 170 (310)
Q Consensus 94 ~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (310)
. ..+..+|+++.++||++++|.| |+++.++. ... +.+. .+..... .++.. ....+
T Consensus 217 ~---~~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~-~~~~---~~~~~~~--------------~~~~~~~~~~a 274 (420)
T 3gbx_A 217 P---NPVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELY-KKLN---SAVFPSA--------------QGGPLMHVIAG 274 (420)
T ss_dssp C---CSTTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHH-HHHH---HHHC------------------CCCCHHHHHH
T ss_pred C---cccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHH-HHhh---hhcCCCC--------------CCCcchhHHHH
Confidence 1 1123489999999999987875 66666551 332 2221 0011000 01101 12233
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHH
Q 046506 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEF 249 (310)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (310)
+..++.....++++++.++..++++++.+.|.+ .+++++.+ ...+++.+.+.+... +
T Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~--------------~------- 332 (420)
T 3gbx_A 275 KAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN-RGYKVVSGGTENHLFLLDLVDKNL--------------T------- 332 (420)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGGTC--------------C-------
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-cCCeeccCCCCCeEEEEEcCCCCC--------------C-------
Confidence 344554444567889999999999999999988 48888754 456666666654210 0
Q ss_pred HHHHHHHHHhcCcEEEEEe-------EECCEeEEEEEccCC---CCCHHHHHHHHHHHHHHHHH
Q 046506 250 NRELLESINASGKAYMTHA-------VLGGIYAIRFAAGAT---LTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 250 ~~~l~~~l~~~g~~~~~~~-------~~~~~~~iRis~~~~---~~t~edi~~li~~l~~~~~~ 303 (310)
...+.+.+.+.|. .+.+. ...+...+|++++.. ..+++++++++++|++++..
T Consensus 333 ~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 333 GKEADAALGRANI-TVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp HHHHHHHHHHTTE-ECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCc-EeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 1345566666665 44431 111234599996532 14589999999999987754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=151.11 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=150.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++.++.++ .+.+|+++|+++|++.. +.+|++++++ .|.+.|+++|+++|++||+++++|++|+.+......
T Consensus 140 ~~~~~~~~--~~~~d~~~l~~~i~~~~-----~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~ 210 (417)
T 3n0l_A 140 SCFYGVEL--DGRIDYEKVREIAKKEK-----PKLIVCGASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGE 210 (417)
T ss_dssp EEEECCCT--TSSCCHHHHHHHHHHHC-----CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS
T ss_pred eEeccCCC--CCCcCHHHHHHHHHhcC-----CeEEEECCcc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhccc
Confidence 44555653 46899999999998431 3466655544 399999999999999999999999998766543221
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKL 171 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (310)
.. ..+..+|++++++||++.+|.| |+++.+++.............. .++.. ....++
T Consensus 211 ~~---~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~aa~ 268 (417)
T 3n0l_A 211 HP---SPFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPGI------------------QGGPLMHVIAAK 268 (417)
T ss_dssp SC---CCTTTCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTTT------------------CSSCCHHHHHHH
T ss_pred CC---CccccceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCcc------------------cCCcHHHHHHHH
Confidence 11 1122479999999999988875 7777664544322211100000 01101 122344
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
.+++.....++++++.++..++++++.+.|.+ .++++... ...+++.+.+.+... + .
T Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~--------------~-------~ 326 (417)
T 3n0l_A 269 AVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDREF--------------S-------G 326 (417)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSS--------------C-------H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCCC--------------C-------H
Confidence 44555444567889999999999999999988 58888652 345566666544211 0 1
Q ss_pred HHHHHHHHhcCcEEEEEeEE-------CCEeEEEEEccC---CCCCHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHAVL-------GGIYAIRFAAGA---TLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~~~-------~~~~~iRis~~~---~~~t~edi~~li~~l~~~~~~ 303 (310)
..+.+.|.+.|. .+.+... .....+|++... ...++++|++++++|++++..
T Consensus 327 ~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 327 KDADLALGNAGI-TANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHTTE-ECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCe-EEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 345566666664 4332211 123569998542 225689999999999988753
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-18 Score=154.13 Aligned_cols=237 Identities=11% Similarity=0.063 Sum_probs=152.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++++++.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++|
T Consensus 143 ~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 213 (389)
T 1o4s_A 143 ILAGGT---VNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISD 213 (389)
T ss_dssp HHTTCE---EEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCE---EEEEecCCccCCCCCHHHHHHhcccC------ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 445666 88999876334679999999999653 457788888999999977 999999999999999999
Q ss_pred cccccccccCh--hhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+....+ .... .....+.|+++.|+||+++.| ..+|+++++ +..+.........+.
T Consensus 214 ea~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~-~~~~~~l~~~~~~~~--------------- 276 (389)
T 1o4s_A 214 EVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHSMTGWRVGYLISS-EKVATAVSKIQSHTT--------------- 276 (389)
T ss_dssp CTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHT---------------
T ss_pred ccccccccCCCCCCHhh-cCCCCCcEEEEeechhhcCCcccceEEEEeC-HHHHHHHHHHhhhcc---------------
Confidence 99987654221 1111 111235799999999998633 227888764 333322211000000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
.+ ...+..+++...+.. ++++..++..++.+++.+.|+++ ++++..+....++.+.+. .+
T Consensus 277 ----~~--~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~----------- 336 (389)
T 1o4s_A 277 ----SC--INTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR-GD----------- 336 (389)
T ss_dssp ----CS--CCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS-SC-----------
T ss_pred ----cC--CCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC-CC-----------
Confidence 00 122233334444432 27778888889999999999887 777654332333444443 11
Q ss_pred ccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|. +.|.....+......+++|+|++ +++++++.+++.|++.+
T Consensus 337 ------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~---~~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 337 ------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA---TSIERLTEALDRIEDFL 386 (389)
T ss_dssp ------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe---CCHHHHHHHHHHHHHHH
Confidence 135666775 56644333222222358999965 38899999999998765
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=158.66 Aligned_cols=240 Identities=10% Similarity=-0.030 Sum_probs=153.3
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccCh
Q 046506 12 NFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICP 91 (310)
Q Consensus 12 ~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~ 91 (310)
.++.||++. + ...+.+ +++ .+.+|++++++|++|.+.|+++|.++ +|+++++|++|+.+..+.+
T Consensus 146 ~~~~v~~~~-g-~~~~~~-----i~~------~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~ 209 (398)
T 2fyf_A 146 EPIIITSDP-G-SAPEPQ-----TDP------SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVD 209 (398)
T ss_dssp CCEEEECCT-T-CCCCCC-----CCT------TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCC
T ss_pred ceEEEecCC-C-CCCCcc-----ccC------CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccC
Confidence 388898873 2 233321 222 24578888999999999999999887 8999999999987765432
Q ss_pred hhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhcc------CCccccccccccccccCCCCceeccCCC
Q 046506 92 EFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST------NPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 92 ~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~------~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
. ..+|++++++||+++.|.|+|+++++++ .+...... .++|+...... ..... ... .++..
T Consensus 210 ~--------~~~di~~~s~sK~~~~~gg~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~~t~~ 276 (398)
T 2fyf_A 210 I--------AETDAYYFAPQKNFASDGGLWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPIAV--ENSLK-NQT-YNTPA 276 (398)
T ss_dssp G--------GGCSEEEECTTSTTCSCSSEEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHHHH--HHHTT-TCC-SSCCC
T ss_pred c--------ccCcEEEEecCcccCCCCceEEEEECHH-HHHHhhcccccCCCCCcEEehHHHh--hhccc-CCC-CCCCC
Confidence 1 1389999999999998877888887654 33322110 12232211000 00000 000 01111
Q ss_pred -cchHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEec-CC--Cce-EEEEEEcCCcchhhhhhhhcccc
Q 046506 166 -FRSLKLWFVLRNYGVAN-LRHFLRSHVNMAKLFERLVGSDKRFEVVF-PR--HFA-VVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 166 -~~~~~~~~~l~~~~~~~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~--~~~-~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
....++.++++.+...+ ++++.++..++++++.+.|+++|++++.. ++ ..+ +++|.++...
T Consensus 277 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------- 343 (398)
T 2fyf_A 277 IATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV------------- 343 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS-------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC-------------
Confidence 12234556666554555 88999999999999999999888999874 23 355 7788774310
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.|.++|.....+....+.+.+|+|+. .+++++|+++++++|++++.+
T Consensus 344 --~-------~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 344 --D-------AGTVAKILRANGIVDTEPYRKLGRNQLRVAMF-PAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp --C-------HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECC-TTSCHHHHHHHHHHHHHHHHT
T ss_pred --C-------HHHHHHHHHHCCcEEecCcccCCCCEEEEEec-CCCCHHHHHHHHHHHHHHHHh
Confidence 0 14577777777754332211112468999976 579999999999999987653
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=151.59 Aligned_cols=240 Identities=11% Similarity=0.075 Sum_probs=151.3
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++.++.+++ .+.+|+++|+++|++.. +.+|+++++++ |...++++|+++|++||+++++|++|+.+......
T Consensus 147 ~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~ 218 (425)
T 3ecd_A 147 ALQYGVSRD-TMLIDYDQVEALAQQHK-----PSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGR 218 (425)
T ss_dssp EEEECCCTT-TSSCCHHHHHHHHHHHC-----CSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS
T ss_pred eeecCCCcc-cCccCHHHHHHHHhhcC-----CcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhccc
Confidence 345555543 46899999999997531 34566654433 78899999999999999999999998766543322
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKL 171 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (310)
... .+..+|+++.++||++++|.| |+++.+++... +.+.. ...... .++.. ....++
T Consensus 219 ~~~---~~~~~di~~~s~sK~l~g~~~-g~~~~~~~~~~-~~~~~---~~~~~~--------------~~~~~~~~~~a~ 276 (425)
T 3ecd_A 219 HAN---PVEHAHVVTSTTHKTLRGPRG-GFVLTNDEEIA-KKINS---AVFPGL--------------QGGPLMHVIAGK 276 (425)
T ss_dssp SCC---GGGTCSEEEEESSGGGCCCSC-EEEEESCHHHH-HHHHH---HHC-------------------CCCHHHHHHH
T ss_pred ccC---chhcCcEEEecCCcccCCCCc-EEEEeCCHHHH-HHHHh---hhCccc--------------cCCccHHHHHHH
Confidence 111 112379999999999987764 77766655332 22210 000000 00101 122334
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
.+++.....++++++.++..++++++.+.|.+. ++++..+ ...+++.+.+.+... + .
T Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~-------~ 334 (425)
T 3ecd_A 277 AVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGL--------------K-------G 334 (425)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC--------------C-------H
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCCC--------------C-------H
Confidence 445544455778899999999999999999884 8888754 356666666654210 0 1
Q ss_pred HHHHHHHHhcCcEEEEEeEE------CCEeEEEEEccC---CCCCHHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHAVL------GGIYAIRFAAGA---TLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~~~------~~~~~iRis~~~---~~~t~edi~~li~~l~~~~~~~ 304 (310)
..+.+.+.+.|........+ .....+|++++. ...+++++++++++|++++...
T Consensus 335 ~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 335 AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 34566666666543321111 123579999442 1235999999999999888664
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=150.93 Aligned_cols=248 Identities=16% Similarity=0.111 Sum_probs=152.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ ++.+|+++|+++|++. +.+|+ .++++|.+.|+++|+++|+++|+++++|++
T Consensus 120 ~~~~g~~---~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea 186 (399)
T 2oga_A 120 VSATGAT---PVPVEPHED-HPTLDPLLVEKAITPR------TRALL---PVHLYGHPADMDALRELADRHGLHIVEDAA 186 (399)
T ss_dssp HHHTTCE---EEEECBCSS-SSSBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECT
T ss_pred HHHCCCE---EEEEecCCC-CCCcCHHHHHHhcCCC------CeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECc
Confidence 3445666 889999863 4689999999999653 33444 356789999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecc--cccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCce
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+.+... +. .. .. ...|++++|+| |+++.|..+|+++.+++......... ...... .+....
T Consensus 187 ~~~g~~~-~~-~~-~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~----------~~~~~~ 251 (399)
T 2oga_A 187 QAHGARY-RG-RR-IG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ----------KYSHET 251 (399)
T ss_dssp TCTTCEE-TT-EE-TT--CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSS----------TTCCCS
T ss_pred ccccCcc-CC-ee-cc--cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccc----------cccccc
Confidence 9766432 11 11 11 12689999985 99876544555555545443222110 000000 000000
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-ceEE--EEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-FAVV--CFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-~~~v--~~~~~~~~~~~~~~~~~~ 236 (310)
.....+...+..+++...+ +.++++.++..++++++.+.|.++|++++...+. .+.+ .|.+...+
T Consensus 252 ~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 319 (399)
T 2oga_A 252 KGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTER---------- 319 (399)
T ss_dssp CCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSS----------
T ss_pred cccCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCC----------
Confidence 0111123344444433322 4456677888889999999999988887654332 2211 24333211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E----------C------------CEeEEEEEccCCCCCHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV-L----------G------------GIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~----------~------------~~~~iRis~~~~~~t~edi~~l 293 (310)
..++.+.|.+.|........ . + ....+|+++. +++|++|++++
T Consensus 320 -------------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~-~~~t~edi~~~ 385 (399)
T 2oga_A 320 -------------RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIG-PHLERPQALRV 385 (399)
T ss_dssp -------------HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCS-TTCCHHHHHHH
T ss_pred -------------HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCC-CCCCHHHHHHH
Confidence 13566777777753322110 0 0 0268999955 68999999999
Q ss_pred HHHHHHHHHHH
Q 046506 294 WTVVQEHLEAL 304 (310)
Q Consensus 294 i~~l~~~~~~~ 304 (310)
+++|++++.++
T Consensus 386 ~~~l~~~~~~l 396 (399)
T 2oga_A 386 IDAVREWAERV 396 (399)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=153.14 Aligned_cols=246 Identities=13% Similarity=0.077 Sum_probs=154.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|+. ++.+|.++.+.+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 128 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 128 VILAGGK---PVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp HHHHTCE---EEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCE---EEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456766 88999875323679999999999653 457778888999999875 99999999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|++|+.+.......... ..+..+.|+++.|+||+++.| ..+|+++++ +..+....... .+....
T Consensus 199 De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~-~~~~~~----------- 265 (389)
T 1gd9_A 199 DEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP-SWIIERMVKFQ-MYNATC----------- 265 (389)
T ss_dssp ECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHH-TTTTCS-----------
T ss_pred ehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC-HHHHHHHHHHH-hhhccC-----------
Confidence 99998765432101111 111224689999999998644 236888765 43332221110 000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVA--NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
.-......+.++++. +.. +++++.++..++++++.+.|+++ ++++..+.....+.+.+.....
T Consensus 266 ------~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------- 330 (389)
T 1gd9_A 266 ------PVTFIQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGL------- 330 (389)
T ss_dssp ------CCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGTC-------
T ss_pred ------CCHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCCCC-------
Confidence 000112222233322 233 67888889999999999999987 7776643323334444432000
Q ss_pred hccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESIN-ASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.|. +.|. .+.+. .. .+.+++|+|++ +++++++.+++.|++.+++
T Consensus 331 -------~-------~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~iRi~~~---~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 331 -------T-------SKKFSELMLKEARV-AVVPGSAFGKAGEGYVRISYA---TAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp -------C-------HHHHHHHHHHHTCE-ECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred -------C-------HHHHHHHHHHhCCE-EEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 0 135667776 5664 44432 11 13568999965 2799999999999988755
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-17 Score=149.28 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=147.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|+. ++++|.+ |+++|+++|+++ +.+|++..++|++|.+.|+++|+++|++||+++|+|++|
T Consensus 127 ~~~g~~---~~~v~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~ 190 (392)
T 3qhx_A 127 TGWNVE---YTPVALA-------DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTF 190 (392)
T ss_dssp GGGTCE---EEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HhcCcE---EEEeCCC-------CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCC
Confidence 345665 7777663 789999999764 458888999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....+. . .++|+++.|+||+++++.+ +|+++.+++.......... ..
T Consensus 191 ~~~~~~~~~------~-~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~---------------------~~ 242 (392)
T 3qhx_A 191 ASPALQQPL------S-LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQ---------------------NG 242 (392)
T ss_dssp TCTTTCCGG------G-GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH---------------------HH
T ss_pred cccccCChH------H-hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHH---------------------Hh
Confidence 765332221 1 1589999999999987643 6777766554432221100 00
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----------------ceEEEEEEcC
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----------------FAVVCFRVSP 224 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----------------~~~v~~~~~~ 224 (310)
.+.....+..|.+++.+ +.+..++++..++++++.+.|++.|++..+..|. .++++|.+.+
T Consensus 243 ~g~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~ 320 (392)
T 3qhx_A 243 AGAVPGPFDAYLTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA 320 (392)
T ss_dssp HCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred cCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC
Confidence 11122344455554433 3466778888999999999999988885443221 4578888876
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC------cE---EEEEeEE-----------CCEeEEEEEccCCC
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASG------KA---YMTHAVL-----------GGIYAIRFAAGATL 284 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g------~~---~~~~~~~-----------~~~~~iRis~~~~~ 284 (310)
. ......+.+.+...+ .. .+.+... -..+.||+|+. ..
T Consensus 321 ~---------------------~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e 378 (392)
T 3qhx_A 321 G---------------------RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVG-IE 378 (392)
T ss_dssp C---------------------HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECC-SS
T ss_pred c---------------------HHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEec-cC
Confidence 3 112234444443322 11 1111100 12467999977 57
Q ss_pred CCHHHHHHHHHHH
Q 046506 285 TEERHVMVAWTVV 297 (310)
Q Consensus 285 ~t~edi~~li~~l 297 (310)
+++++|+.+.++|
T Consensus 379 ~~~~~i~~l~~al 391 (392)
T 3qhx_A 379 DVADLLDDLKQAL 391 (392)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888887776
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=150.24 Aligned_cols=266 Identities=12% Similarity=0.074 Sum_probs=152.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. ++.+|+++ ++.+|+++|+++|++.. ..+.+|++++ ++|...|+++|+++|+++|+++++|++|
T Consensus 90 ~~~g~~---~~~v~~~~--~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~ 158 (394)
T 1o69_A 90 CYLKAK---PVFIDCDE--TYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAE 158 (394)
T ss_dssp HHTTCE---EEEECBCT--TSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCE---EEEEEeCC--CCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcC
Confidence 345665 88999884 46899999999997621 0133566554 6899999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+....... ...+..+|+++++.||+++ |.++|+++++++..+.........+.. .. ..... .+.+
T Consensus 159 ~~g~~~~~~~---~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~-~~----~~~~~----~~~g 225 (394)
T 1o69_A 159 ALGSFYKNKA---LGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARE-NC----LHYEH----LDYG 225 (394)
T ss_dssp CTTCEETTEE---TTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCC-SS----SSCCC----SSCC
T ss_pred cccceeCCcc---cccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccc-cC----ccccc----cccC
Confidence 8554432211 1112358899999999876 668899888666544333211111100 00 00000 1112
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----CceEEEEEEcCCcc----hhh-hhh
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----HFAVVCFRVSPSAV----MDK-LKT 233 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~~~~~~~~~----~~~-~~~ 233 (310)
.++....+.+++.....+.+++..++..++++++.+.|.++ +++..++ ...++++.+.+... ... -..
T Consensus 226 ~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 303 (394)
T 1o69_A 226 YNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINI 303 (394)
T ss_dssp CBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEEC
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccc
Confidence 22222222222221113456778899999999999999886 6665432 12256676653200 000 000
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-------EECC----E---------eEEEEEccCCCCCHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHA-------VLGG----I---------YAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------~~~~----~---------~~iRis~~~~~~t~edi~~l 293 (310)
.+.... . .....++.+.|.+.|....... .+.. . ..+|+.. ++++|++||+++
T Consensus 304 ~~~~~~-~-----~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~edi~~~ 376 (394)
T 1o69_A 304 SQKNIT-L-----HPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS-GTAMSKDDVYEI 376 (394)
T ss_dssp CCCCCC-C-----CHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC-CTTCCHHHHHHH
T ss_pred cccccc-c-----ccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccC-CCCCCHHHHHHH
Confidence 000000 0 0012456777777765322210 0011 1 3456663 578999999999
Q ss_pred HHHHHHHHH
Q 046506 294 WTVVQEHLE 302 (310)
Q Consensus 294 i~~l~~~~~ 302 (310)
+++|+++..
T Consensus 377 ~~~l~~~~~ 385 (394)
T 1o69_A 377 SKLILKSIK 385 (394)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998753
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=159.06 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=144.8
Q ss_pred ceecCCCCCCEEEEec--CCCC--CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKT--TKSS--SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~--~~~~--~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~ 78 (310)
+...|.. ++++++ +++- .+.+|+++| +.+. +.++++++ +|.+|.+.|+++|+++|++||++++
T Consensus 113 ~~~~G~~---~~~v~~~~~~~~~~~~~~d~~~l---~~~~------~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~li 179 (446)
T 2x3l_A 113 LDISQQE---GHFIETHQSPLTNHYNKVNLSRL---NNDG------HKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVL 179 (446)
T ss_dssp HHHHTCC---EEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEE
T ss_pred HHHcCCe---EEEEeCeeccccCcCCCCCHHHH---cCCC------ceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEE
Confidence 3446776 888888 5320 046888887 3322 44777777 6669999999999999999999999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchh-HHhhhccCCccccccccccccccCCCC
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
+|+||+. .+.+......... .++|+++.|+||+++++.|+|+++++++.. ..+ +.....
T Consensus 180 vDea~~~-~~~f~~~~~~~~~-~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~-~~~~~~----------------- 239 (446)
T 2x3l_A 180 IDEAHGA-HFGLQGFPDSTLN-YQADYVVQSFHKTLPALTMGSVLYIHKNAPYREN-IIEYLS----------------- 239 (446)
T ss_dssp EECTTCT-TTTSTTSCCCGGG-GTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHH-HHHHHH-----------------
T ss_pred Ecchhhh-hhccCCCCCChHH-cCCCEEEECCccccccccccEEEEEcCCcCCHHH-HHHHHH-----------------
Confidence 9999987 3322110000111 148999999999999999999999977631 111 100000
Q ss_pred ceeccCCC-c-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 158 WQITLSRR-F-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.++.+.+ + ..+++.++++.+...+.+++.++..++++++++. +++++.+.....+.+.+.+.+
T Consensus 240 -~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~~--------- 304 (446)
T 2x3l_A 240 -YFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGFT--------- 304 (446)
T ss_dssp -HHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTSC---------
T ss_pred -HHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCcC---------
Confidence 0011111 1 1233444555554444455778888888888887 677765433335666654321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.|.++|. .+... +...+|++++ .++|++++ +++++|+++.+.+
T Consensus 305 --------------~~~l~~~L~~~GI-~v~~~---g~~~iRi~~~-~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 305 --------------GHDIQNWFMNAHI-YLELA---DDYQALAILP-LWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp --------------HHHHHHHHHHTTE-EESEE---CSSCEEEECC-CCCTTCCC-CHHHHHHHHHTCC
T ss_pred --------------HHHHHHHHHHCCC-EEEec---CCCEEEEEee-cCCCHHHH-HHHHHHHHHHHhh
Confidence 1356777777764 43311 3468999966 57899999 9999999887543
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-18 Score=150.29 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=81.0
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH-hCcEEEeecccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ-FGIWVHVDAAYA 84 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~-~g~~l~vD~a~~ 84 (310)
.|+. ++++|. +|+++|+++|++. +.+|++++++|++|.+.|+++|+++|++ +|+++++|++|+
T Consensus 61 ~g~~---~~~~~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~ 124 (331)
T 1pff_A 61 FGVE---VDFIDM-------AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFA 124 (331)
T ss_dssp TTCE---EEEECT-------TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTT
T ss_pred cCCE---EEEeCC-------CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCc
Confidence 4554 666654 4678899988643 4588889999999999999999999999 999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhH
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDL 131 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~ 131 (310)
.+....+. . .++|+++.|+||++++|.+ +|++++++++.+
T Consensus 125 ~~~~~~~~------~-~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~ 166 (331)
T 1pff_A 125 SPILTNPL------D-LGVDIVVHSATKYINGHTDVVAGLVCSRADIIA 166 (331)
T ss_dssp HHHHCCGG------G-GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH
T ss_pred ccccCChh------h-cCCcEEEEECccccCCCCCceEEEEEeCcHHHH
Confidence 77653322 1 1489999999999999877 678877653444
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=152.91 Aligned_cols=250 Identities=13% Similarity=0.105 Sum_probs=153.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEE-EEeccCCcccccCChH---HHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFL-CATIGTTAITAVDTLK---PLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~pl~---~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|.+++ .+|+++|+++|++....+..+.+| ++.+++|++|.+.|++ +|+++|++||+++++
T Consensus 140 ~~~g~~---~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 213 (407)
T 2zc0_A 140 EQLGAK---IEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIE 213 (407)
T ss_dssp HTTTCE---EEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHcCCE---EEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 445665 889998863 399999999997422121124455 4667789999999987 999999999999999
Q ss_pred ecccccccccChhhhhhhcCC--CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~--~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|++|+.+......... ...+ .+.+++..+++|+++ | ..+|+++++ +............+..
T Consensus 214 De~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~------------- 277 (407)
T 2zc0_A 214 DTAYNFMRYEGGDIVP-LKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAE-GEILKKVLMQKQPIDF------------- 277 (407)
T ss_dssp ECTTTTSBSSCSSCCC-GGGGCSSCCEEEEEESTTTTC-TTSCCEEEECC-HHHHHHHHHHHTTTTS-------------
T ss_pred ECCCcccccCCCCCCC-hhhcCCCCCEEEEcccccccC-CCcceEEEecC-HHHHHHHHHHHHhhcC-------------
Confidence 9999876543211110 1111 123467788999998 5 247888765 4333222111100000
Q ss_pred CceeccCCCcchHHHHHHHHHhC-H-HHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYG-V-ANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
..+ ......+.++++... . ..++++.++..++.+++.+.|++ .|++++..+....++.+.+....
T Consensus 278 ----~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------- 345 (407)
T 2zc0_A 278 ----CAP-AISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGA------- 345 (407)
T ss_dssp ----SSC-HHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTC-------
T ss_pred ----CCC-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCC-------
Confidence 000 011222233333211 2 34566777888889999999976 57777654444556667664310
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-E----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 234 KYENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-L----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.|.++ |. .+.+.. . .+.+++|+|+.. . ++++++.++++|+++++++.
T Consensus 346 --------~-------~~~l~~~l~~~~gi-~v~~g~~~~~~~~~~~~iRis~~~-~-~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 346 --------D-------GISFANELMEREGV-VVVPGKPFYTDESGKNAIRLNFSR-P-SKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp --------C-------HHHHHHHHHHHTCE-ECBCSGGGCSSSCCTTEEEEECSS-S-CTTHHHHHHHHHHHHHHHHC
T ss_pred --------C-------HHHHHHHHHHhCCe-EEECchhccCCCCCCCeEEEEeCC-C-CHHHHHHHHHHHHHHHHHHh
Confidence 0 13567777777 64 443321 1 134789999764 3 78999999999999887653
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-17 Score=147.12 Aligned_cols=232 Identities=11% Similarity=0.068 Sum_probs=153.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHH--HhCcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAK--QFGIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~--~~g~~l~vD 80 (310)
++..|.. ++.+|.++ .++ +|+++|++++++. +.+|++++++|++|.+.|++++.++|+ ++|+++++|
T Consensus 123 ~~~~g~~---~~~v~~~~-~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D 191 (365)
T 3get_A 123 AKQCGAK---CYKTQSIT-HNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVID 191 (365)
T ss_dssp HHHHTCE---EEECSSSS-CCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEE
T ss_pred HHHcCCE---EEEEecCC-CCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 3445666 88888832 357 9999999999743 557888889999999999999888888 779999999
Q ss_pred cccccccc--c----ChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 81 AAYAGSAC--I----CPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 81 ~a~~~~~~--~----~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
++|+.+.+ . .+.... .. ....++++.|+||+++.| ..+|++++ +++...........+- .
T Consensus 192 e~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~--~-------- 258 (365)
T 3get_A 192 AAYNEFASFKDSKKHLEPCEL-IK-EFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPFN--V-------- 258 (365)
T ss_dssp CTTHHHHHHHCGGGCCCHHHH-HH-HCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTTC--S--------
T ss_pred CccHHHhcccCCcccccHhHH-hc-cCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCCC--c--------
Confidence 99975542 1 111110 01 113567889999998743 46788877 4544333211111110 0
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
-......+.++++ ..+++++..++..++++++.+.|.++ ++++. ++..+.+.+.+...+
T Consensus 259 ----------~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~~------- 317 (365)
T 3get_A 259 ----------SNLALKAAVAAMD--DDEFTEKTLENNFSQMELYKEFAKKH-NIKII-DSYTNFITYFFDEKN------- 317 (365)
T ss_dssp ----------CHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSSSC-------
T ss_pred ----------CHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCCC-------
Confidence 0011222233333 23678889999999999999999988 88875 455666666665411
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINASGKAYMTHA-VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.++|. .+.+. ... .+++|+|+. +++|+++++++|++++
T Consensus 318 ----------------~~~~~~~l~~~gi-~v~~g~~~~-~~~iRis~~----~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 318 ----------------STDLSEKLLKKGI-IIRNLKSYG-LNAIRITIG----TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ----------------HHHHHHHHHTTTE-ECEECGGGT-CSEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHCCE-EEEECccCC-CCEEEEEcC----CHHHHHHHHHHHHHHh
Confidence 1467777777764 44432 222 579999944 7899999999998864
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=153.46 Aligned_cols=245 Identities=14% Similarity=0.124 Sum_probs=154.2
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEE-EEeccCCcccccCChH---HHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFL-CATIGTTAITAVDTLK---PLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~pl~---~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|.+++ .+|+++|+++|++. .+.+| ++.+++|++|.+.|.+ +|+++|++||+++++
T Consensus 133 ~~~g~~---~~~~~~~~~---~~d~~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 133 RLQGPR---FLTVPAGEE---GPDLDALEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp HTTCCE---EEEEEEETT---EECHHHHHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHcCCE---EEecCcCCC---CCCHHHHHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 345665 888998863 39999999999762 13344 5678889999998855 899999999999999
Q ss_pred ecccccccccChh---hhhhhcCC-CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPE---FRHFIDGV-EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~---~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|++|+.+...... ........ ..-.++..++||+++....+|+++++ ++.+.........+.
T Consensus 202 De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~------------- 267 (397)
T 2zyj_A 202 DDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAH-PEALQKLVQAKQGAD------------- 267 (397)
T ss_dssp ECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHH-------------
T ss_pred eCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecC-HHHHHHHHHHHHhhc-------------
Confidence 9999875532211 11100000 01237789999999822457888765 433322211100000
Q ss_pred CCceeccCCCcchHHHHHHHHHhC--H-HHHHHHHHHHHHHHHHHHHHHcC-CC-CeEEecCCCceEEEEEEcCCcchhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYG--V-ANLRHFLRSHVNMAKLFERLVGS-DK-RFEVVFPRHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~~a~~l~~~L~~-~~-~~~v~~~~~~~~v~~~~~~~~~~~~ 230 (310)
.+. ..+...++...+. . +.++++.++..++.+++.+.|++ +| ++++..+....++.+.+....
T Consensus 268 ------~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~---- 335 (397)
T 2zyj_A 268 ------LHT--PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGL---- 335 (397)
T ss_dssp ------SSC--CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTC----
T ss_pred ------CCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCC----
Confidence 000 1122222333332 2 45677788888899999999986 57 688765555566666664310
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.|.++|.....+... .+.+++|+|+.. .++++++.++++|++++.++.
T Consensus 336 -----------~-------~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~--~~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 336 -----------S-------AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYAT--LDREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp -----------C-------HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------C-------HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 0 145777787786544332222 135789999764 389999999999999887654
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=152.63 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=121.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. ++++|.+ |+++|+++|++++ +.+|++.+.+|++|.+.|+++|+++|++||+++++|++
T Consensus 174 ~~~~G~~---v~~v~~~-------d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a 238 (445)
T 1qgn_A 174 LPKMGIT---ATVIDPA-------DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGT 238 (445)
T ss_dssp GGGGTCE---EEEECSS-------CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCE---EEEeCCC-------CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 3445666 7777653 7899999998753 25888999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeeccccccccc--ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL--DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+....+ .. .++|+++.|+||+++++. ..|+++.++ +.+..... +...
T Consensus 239 ~~~~~~~~~------~~-~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~----~~~~---------------- 290 (445)
T 1qgn_A 239 FATPLNQKA------LA-LGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRN----LHHI---------------- 290 (445)
T ss_dssp TTCTTTCCT------TT-TTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHH----HHHH----------------
T ss_pred CcccccCCc------cc-cCCEEEEECCcccccccccceEEEEEECH-HHHHHHHH----HHHH----------------
Confidence 976643221 11 258999999999988543 277777654 33332211 0000
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCe-EEecC-----C-----------CceEEEEEEc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRF-EVVFP-----R-----------HFAVVCFRVS 223 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~-----~-----------~~~~v~~~~~ 223 (310)
.+........|..++ +.+.+..++++..++++++.+.|++.|++ .+..+ | ..++++|.+.
T Consensus 291 -~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 291 -LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp -HCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred -hCCCCCHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 000112333344433 33556677788888899999999999888 45433 1 3678999887
Q ss_pred C
Q 046506 224 P 224 (310)
Q Consensus 224 ~ 224 (310)
+
T Consensus 368 ~ 368 (445)
T 1qgn_A 368 G 368 (445)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=143.54 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=152.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|.++ .+.+|+++|++++++. + +.+|++++++|++|.+.|++++.++|+.+++++++|++|
T Consensus 134 ~~~g~~---~~~v~~~~--~~~~d~~~l~~~i~~~-~----~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~ 203 (369)
T 3cq5_A 134 KGTHTE---FIAVSRGA--DFRIDMDVALEEIRAK-Q----PDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAY 203 (369)
T ss_dssp HHTTCE---EEEEECCT--TSSCCHHHHHHHHHHH-C----CSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTT
T ss_pred HHcCCE---EEEecCCc--CCCCCHHHHHHHhhcc-C----CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCc
Confidence 445665 88898774 3579999999999762 1 447778899999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCC-CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEG-ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....+ ....... .+ .+++..++||+++.| ..+|++++++. .+.........|
T Consensus 204 ~~~~~~~~-~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~-------------------- 260 (369)
T 3cq5_A 204 AEFSPSPS-ATTLLEK-YPTKLVVSRTMSKAFDFAGGRLGYFVANPA-FIDAVMLVRLPY-------------------- 260 (369)
T ss_dssp GGGCCSCC-GGGGTTT-CTTTEEEEEESSSTTSCGGGCCEEEEECTH-HHHHHHTTSCTT--------------------
T ss_pred hhhcCCcc-hHHHHhh-CCCCEEEEEechHhcCCcccceEEEEeCHH-HHHHHHHcCCCC--------------------
Confidence 87653211 1111111 12 458889999999744 24688887643 433222111111
Q ss_pred cCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 162 LSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+ ...+..+++...+ ..+.+++..++..++.+++.+.|++. ++++. ++..+++.+.+...
T Consensus 261 -~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~--------------- 320 (369)
T 3cq5_A 261 -H--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFSD--------------- 320 (369)
T ss_dssp -C--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCSS---------------
T ss_pred -C--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC---------------
Confidence 0 1122222222222 23467788888999999999999874 88876 55666776655411
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+.|. .+.+. ...+++|++++ +++|+++++++|++++
T Consensus 321 ---------~~~l~~~l~~~gi-~v~~~--~~~~~iRis~~----~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 321 ---------QHAAWQAFLDRGV-LIRDV--GIAGHLRTTIG----VPEENDAFLDAAAEII 365 (369)
T ss_dssp ---------HHHHHHHHHHTTE-ECBCC--SCTTEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHCCE-EEEEC--CCCCeEEEEeC----CHHHHHHHHHHHHHHH
Confidence 1356666766764 44333 22468999954 6899999999998875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=149.73 Aligned_cols=256 Identities=14% Similarity=0.086 Sum_probs=151.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ .+.+|+++|+++|++. +.+|+++ +++|.+.|+++|.++|++||+++++|++
T Consensus 96 ~~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a 162 (393)
T 1mdo_A 96 IVLLGAN---PVMVDVDRD-TLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAA 162 (393)
T ss_dssp HHHTTCE---EEEECBCTT-TCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECT
T ss_pred HHHCCCE---EEEEeccCC-cCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECc
Confidence 3456776 899999874 3689999999999653 3455543 4689999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecc--cccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+..... .. . +. .|++++|+| |+++++ .+|+++.+++........... +...... .........+.+
T Consensus 163 ~~~g~~~~~--~~-~-~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~ 233 (393)
T 1mdo_A 163 HATGTSYKG--RH-I-GA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF-HGLGVDA-WDRQSGGRAPQA 233 (393)
T ss_dssp TCTTCEETT--EE-T-TS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB-TTEECC------------CC
T ss_pred cccCCeECC--ee-c-CC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh-cCCcccc-hhhhcccccccc
Confidence 986543321 11 1 11 799999999 998764 355665554544332211110 0000000 000000001111
Q ss_pred c---cCC--CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC------CceEEEEEEcCCcchh
Q 046506 161 T---LSR--RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR------HFAVVCFRVSPSAVMD 229 (310)
Q Consensus 161 ~---~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------~~~~v~~~~~~~~~~~ 229 (310)
+ .|. +...+....++. ..+++++..++..++++++.+.|.+++ +++...+ ...++.+.+.+..
T Consensus 234 ~~~~~g~~~~~~~~~~a~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~--- 307 (393)
T 1mdo_A 234 EVLAPGYKYNLPDLNAAIALA--QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEAR--- 307 (393)
T ss_dssp EESSCCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHH---
T ss_pred cccccCccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccc---
Confidence 1 111 123333222222 234577888888899999999999885 8775322 2335666664200
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----------------C-----CEeEEEEEccCCCCCHH
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL----------------G-----GIYAIRFAAGATLTEER 288 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----------------~-----~~~~iRis~~~~~~t~e 288 (310)
. .....++.+.|.+.|......... . ....+|+++. +++|++
T Consensus 308 ------------~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~-~~~t~~ 370 (393)
T 1mdo_A 308 ------------C----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLF-PDMTES 370 (393)
T ss_dssp ------------H----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCC-TTCCHH
T ss_pred ------------c----ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCC-CCCCHH
Confidence 0 000145677777777533221100 0 0237999955 679999
Q ss_pred HHHHHHHHHHHHHHH
Q 046506 289 HVMVAWTVVQEHLEA 303 (310)
Q Consensus 289 di~~li~~l~~~~~~ 303 (310)
|+++++++|++++..
T Consensus 371 ~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 371 DFDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987644
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=147.57 Aligned_cols=228 Identities=16% Similarity=0.200 Sum_probs=147.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH-hCcEEEeec
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ-FGIWVHVDA 81 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~-~g~~l~vD~ 81 (310)
++..|+. ++++|.+ |+++|+++|++. +.+|++.+++|++|.+.|+++|+++|++ ||+++++|+
T Consensus 122 ~~~~g~~---~~~v~~~-------d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 122 LTKFGIQ---VDFINTA-------IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HHHTTCE---EEEECTT-------STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEEC
T ss_pred HHHcCCE---EEEECCC-------CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEEC
Confidence 3445665 7777764 678999998653 4588889999999999999999999999 999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
+|+.+....+. .. ++|+++.|+||++++|.+ +|+++++++ .+.+.+.....+....
T Consensus 186 ~~~~~~~~~~~------~~-~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~~g~-------------- 243 (404)
T 1e5e_A 186 TFCSPMITNPV------DF-GVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDITGS-------------- 243 (404)
T ss_dssp TTTCTTTCCGG------GG-TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCCCC--------------
T ss_pred CCchhhhCCcc------cc-CCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhCCCC--------------
Confidence 99876643221 11 589999999999999877 687776654 4431221111111000
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecC------------C----CceEEEEEE
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFP------------R----HFAVVCFRV 222 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~------------~----~~~~v~~~~ 222 (310)
....+..++++..+. .+..++++..++++.+.+.|++.+.+. ++.+ + ..++++|.+
T Consensus 244 -----~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~ 316 (404)
T 1e5e_A 244 -----VISPHDAWLITRGLS--TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFIL 316 (404)
T ss_dssp -----CCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEE
T ss_pred -----CCCHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEe
Confidence 012334444444442 345667777888888888888766553 2211 1 267888876
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-------------------------CC--EeE
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL-------------------------GG--IYA 275 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------------------------~~--~~~ 275 (310)
.+. ..++.+.+.+.+. +..+..+ .+ .+.
T Consensus 317 ~~~------------------------~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~ 371 (404)
T 1e5e_A 317 KSG------------------------FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGM 371 (404)
T ss_dssp TTH------------------------HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTE
T ss_pred CCC------------------------HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCe
Confidence 531 0123334444443 2222111 12 468
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 276 IRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 276 iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+|+|+.. |+++.+++.|++++..+.
T Consensus 372 iRis~g~-----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 372 IRLSVGI-----EDADELIADFKQGLDALL 396 (404)
T ss_dssp EEEECCS-----SCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-----CCHHHHHHHHHHHHHHHH
Confidence 9999663 789999999999887654
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=152.90 Aligned_cols=243 Identities=10% Similarity=0.028 Sum_probs=152.9
Q ss_pred ceecCCCCCCEEEEecC--CCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEE
Q 046506 3 AQIVGIDVKNFRAIKTT--KSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWV 77 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~--~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l 77 (310)
++..|.. ++.+|.+ +. ++.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++
T Consensus 119 ~~~~g~~---~~~v~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~l 188 (381)
T 1v2d_A 119 AFLAGAK---ARLVRLDLTPE-GFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFL 188 (381)
T ss_dssp HHHTTCE---EEEEECEEETT-EEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCE---EEEEeCCCCCc-cCCcCHHHHHHhcCcC------CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEE
Confidence 3445665 8899987 32 3689999999998543 557888889999999877 899999999999999
Q ss_pred EeecccccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 78 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
++|++|+.+.. .........-..+.|+++.++||+++.| | +|+++++++ .+....... .+...
T Consensus 189 i~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~-G~r~G~~~~~~~-~~~~~~~~~-~~~~~----------- 253 (381)
T 1v2d_A 189 ISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEAT-GYRVGWIVGPKE-FMPRLAGMR-QWTSF----------- 253 (381)
T ss_dssp EEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCG-GGCCEEEECCTT-THHHHHHHH-HHHTS-----------
T ss_pred EEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCc-ccceEEEEeCHH-HHHHHHHHH-hhccc-----------
Confidence 99999976543 1111110000235899999999998644 5 788877543 332221100 00000
Q ss_pred CCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
..+ .....++.++++... .++++++.++..++++++.+.|++. ++++..+....++.+.+.+.
T Consensus 254 -----~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--------- 317 (381)
T 1v2d_A 254 -----SAP-TPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW--------- 317 (381)
T ss_dssp -----SCC-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC---------
T ss_pred -----CCC-cHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH---------
Confidence 000 011223333443221 3567888899999999999999885 88877544344555554331
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
++...+.+.|.....+... .+.+++|+|+.. ++++++.+++.|++++...++
T Consensus 318 -----------------~~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~---~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 318 -----------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK---TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp -----------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS---CHHHHHHHHHHHHHHC-----
T ss_pred -----------------hHHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC---CHHHHHHHHHHHHHHHhhccc
Confidence 1334455666433332211 135689999652 899999999999998876643
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=148.84 Aligned_cols=237 Identities=11% Similarity=0.049 Sum_probs=149.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+.+.+ ++++.+.+.+. +.++++++++|++|.+.| +++|+++|++||+++++|
T Consensus 116 ~~~g~~---~~~v~~~~~~~~~~-l~~~~~~~~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 185 (364)
T 1lc5_A 116 AQSGCE---IRRWSLREADGWQL-TDAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILD 185 (364)
T ss_dssp HHTTCE---EEEEECCGGGTTCC-CTTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCe---EEEEeCCcccccch-hHHHHHhccCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEE
Confidence 345665 88899875322222 35444444221 446777888999999998 999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++|+.+........... ...+.++++.|+||+++.| ..+|++++.+++.+.........+
T Consensus 186 e~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~------------------ 246 (364)
T 1lc5_A 186 EAFIDFIPHETGFIPAL-KDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPW------------------ 246 (364)
T ss_dssp CTTGGGSTTCCCSGGGC-TTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTT------------------
T ss_pred CcChhhccCccchhhHh-ccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCCC------------------
Confidence 99976543211101111 1124678889999999754 246887734554443221111100
Q ss_pred eccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
....+..+++...+. .+.+++..++..++.+++.+.|+++|++++. ++..+++.+.+....
T Consensus 247 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~------------ 308 (364)
T 1lc5_A 247 -----SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERED------------ 308 (364)
T ss_dssp -----CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCTT------------
T ss_pred -----CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECCCcH------------
Confidence 012233334444443 2467888888899999999999988899876 456667767664311
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++.+.|.++|. .+.+. .. .+.+++|+|+. +++|+++++++|+++++.+
T Consensus 309 ------------~~l~~~l~~~gi-~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 309 ------------IDLQRRLLTQRI-LIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp ------------CCHHHHHHTTTE-ECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC---
T ss_pred ------------HHHHHHHHHCCc-EEeeCcccCCCCCCEEEEEeC----CHHHHHHHHHHHHHHhhcc
Confidence 246677777764 44432 12 12468999943 5889999999999887654
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-17 Score=149.00 Aligned_cols=253 Identities=9% Similarity=0.027 Sum_probs=156.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc--CCCcEEE-EEeccCCcccccCC---hHHHHHHHHHhCcEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA--GLIPLFL-CATIGTTAITAVDT---LKPLCDVAKQFGIWV 77 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~--~~~~~~v-~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l 77 (310)
+..|.. ++.+|.+++ .+|+++|+++|++.... +..+.+| ++.+++|++|.+.| +++|+++|++||+++
T Consensus 151 ~~~g~~---~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~l 224 (425)
T 1vp4_A 151 RQYLAN---FVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFI 224 (425)
T ss_dssp HTTTCE---EEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHcCCE---EEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 345665 889999863 39999999999863210 0124565 56788899999877 568999999999999
Q ss_pred EeecccccccccChh---hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 78 HVDAAYAGSACICPE---FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
++|++|+.+...... .... . ....+++..+++|+++....+|+++++ ++.+.........+..
T Consensus 225 i~De~~~~~~~~g~~~~~~~~~-~-~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~----------- 290 (425)
T 1vp4_A 225 VEDDPYGALRYEGETVDPIFKI-G-GPERVVLLNTFSKVLAPGLRIGMVAGS-KEFIRKIVQAKQSADL----------- 290 (425)
T ss_dssp EEECSSTTCBCSSCCCCCHHHH-H-CTTTEEEEEESTTTTCGGGCEEEEECC-HHHHHHHHHHHHHHHS-----------
T ss_pred EEECCCccccCCCCCCcCHHHh-C-CCCCEEEEeccccccccccceEEEeeC-HHHHHHHHHHhhhhcC-----------
Confidence 999999865432211 1111 1 113567889999999822236888765 4343222111000000
Q ss_pred CCCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcC-CC---CeEEecCCCceEEEEEEcCCcchh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGS-DK---RFEVVFPRHFAVVCFRVSPSAVMD 229 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~-~~---~~~v~~~~~~~~v~~~~~~~~~~~ 229 (310)
. .-......+..+++... .+.+++..++..++.+++.+.|.+ .| ++.+..+....++.+.+....
T Consensus 291 ------~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~--- 360 (425)
T 1vp4_A 291 ------C-SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF--- 360 (425)
T ss_dssp ------S-CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC---
T ss_pred ------C-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCC---
Confidence 0 00011222233333221 345677788888899999999976 35 688765545566767665310
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 230 KLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.|.++|.....+... .+.+++|+|+.. .++++++.++++|++++.++.
T Consensus 361 ------------~-------~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~--~~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 361 ------------D-------TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL--PPDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp ------------C-------TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------C-------HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 0 024566677776443332212 135789999764 389999999999999988775
Q ss_pred hc
Q 046506 306 SA 307 (310)
Q Consensus 306 ~~ 307 (310)
++
T Consensus 420 ~~ 421 (425)
T 1vp4_A 420 KE 421 (425)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=150.14 Aligned_cols=229 Identities=16% Similarity=0.204 Sum_probs=142.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++.+|.+ |+++|+++|++. +.+|++++++|++|.+.|+++|+++|++||+++++|++|
T Consensus 125 ~~~g~~---~~~v~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~ 188 (398)
T 2rfv_A 125 PKFGIN---VRFVDAA-------KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 188 (398)
T ss_dssp HHTTCE---EEEECTT-------SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCE---EEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 345655 7777663 689999998753 568888999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....+. .. ++|+++.|+||++++|.+ +|+++++++ .+...+. .+.... .
T Consensus 189 ~~~~~~~~~------~~-~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~---~~~~~~---------------~ 242 (398)
T 2rfv_A 189 MSPYCQQPL------QL-GADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARF---VGLKDI---------------T 242 (398)
T ss_dssp TCTTTCCGG------GG-TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHH---THHHHT---------------T
T ss_pred cccccCCch------hh-CCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHH---HHHHhC---------------C
Confidence 866553221 11 489999999999998877 577776644 3331211 011000 0
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE--------------EecC---CCceEEEEEEcC
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE--------------VVFP---RHFAVVCFRVSP 224 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~--------------v~~~---~~~~~v~~~~~~ 224 (310)
+.....+..++++..+ +.+..++++..++++.+.+.|++.+.+. +..+ ...++++|.+.+
T Consensus 243 -~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~ 319 (398)
T 2rfv_A 243 -GGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG 319 (398)
T ss_dssp -CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred -CCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 0011223344444333 2234555666777788888887654332 2211 246788887754
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe----------E------------ECC--EeEEEEEc
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHA----------V------------LGG--IYAIRFAA 280 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----------~------------~~~--~~~iRis~ 280 (310)
. ......+.+.+...| +.++.. . ..+ .+.+|+|+
T Consensus 320 ~---------------------~~~~~~l~~~~~~~~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~ 377 (398)
T 2rfv_A 320 G---------------------LEAGRRMINSVELCL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSV 377 (398)
T ss_dssp H---------------------HHHHHHHHTTCSSSE-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEEC
T ss_pred C---------------------HHHHHHHHHhCCcce-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEe
Confidence 1 111122333332222 111110 0 012 47999997
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 046506 281 GATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 281 ~~~~~t~edi~~li~~l~~~ 300 (310)
. ..+++++|++++++|+++
T Consensus 378 ~-~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 378 G-LEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp C-SSCHHHHHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHHhh
Confidence 7 589999999999999864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=146.67 Aligned_cols=238 Identities=12% Similarity=-0.014 Sum_probs=146.5
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++.++.++. .+.+|+++|++++++.+ +.++++..+++.++ .|+++|+++|++||+++++|++|+.+......
T Consensus 160 ~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~--~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~ 231 (447)
T 3h7f_A 160 NGFYGVDPA-THLIDMDAVRATALEFR-----PKVIIAGWSAYPRV--LDFAAFRSIADEVGAKLLVDMAHFAGLVAAGL 231 (447)
T ss_dssp EEEECCCTT-TCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSC--CCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS
T ss_pred EEEcCcCcc-cCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCc--cCHHHHHHHHHHcCCEEEEECCchhhhhcCCC
Confidence 445666643 46899999999997532 33555544555444 49999999999999999999998665432221
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKL 171 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (310)
+.. .+.++|+++.++||++++|.| |+++.++ +..........++.. ++.. ....++
T Consensus 232 ~~~---~~~~~di~~~s~sK~l~G~~g-G~i~~~~-~~~~~l~~~~~~~~~------------------~~~~~~~~~a~ 288 (447)
T 3h7f_A 232 HPS---PVPHADVVSTTVHKTLGGGRS-GLIVGKQ-QYAKAINSAVFPGQQ------------------GGPLMHVIAGK 288 (447)
T ss_dssp SCC---STTTCSEEEEESSGGGCCCSC-EEEEECG-GGHHHHHHHHTTTTC------------------SSCCHHHHHHH
T ss_pred CCC---CCCCCcEEEecCCcCCCCCCe-EEEEECH-HHHHHHhhhcCCccc------------------CCccHHHHHHH
Confidence 111 123589999999999998877 7776554 332221111001110 1101 123444
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC----CCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD----KRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
.+++.....++++++.++..++++++.+.|.+. +|++++.+ ...+.+.+.+.+... +
T Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~---- 350 (447)
T 3h7f_A 289 AVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL--------------D---- 350 (447)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC--------------C----
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC--------------C----
Confidence 455555555678899999999999999999876 58888753 355666666654311 0
Q ss_pred HHHHHHHHHHHHhcCcEEEE----Ee---EECCEeEEEEEccCC---CCCHHHHHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINASGKAYMT----HA---VLGGIYAIRFAAGAT---LTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 247 ~~~~~~l~~~l~~~g~~~~~----~~---~~~~~~~iRis~~~~---~~t~edi~~li~~l~~~~~~ 303 (310)
...+.+.+.+.|.. +. +. .......+|++.... ..+++|++++++.|++.+..
T Consensus 351 ---~~~~~~~l~~~GI~-v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 351 ---GQAAEDLLHEVGIT-VNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp ---HHHHHHHHHHTTEE-CBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHCCeE-EecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 12344445455543 22 11 112346799985421 25789999999999987754
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=150.59 Aligned_cols=241 Identities=14% Similarity=0.075 Sum_probs=152.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++++.+.+|+++|+++ . +.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 132 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~---~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 132 LRALGLV---PVDLPTAPENRLQPVPADFAGL---D------LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp HHHTTCE---EEEEECCGGGTTSCCHHHHTTS---C------CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCE---EEEeecCcccCCCCCHHHHHhc---C------CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456776 8999998755567899999887 2 447888899999999988 88999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|++|+.+...... .. .......++++.+.+|+++ ...++|+++.+++ ...........+.
T Consensus 200 De~~~~~~~~~~~-~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~---------------- 260 (391)
T 3h14_A 200 DEIYHGIEYEAKA-VT-ALELTDECYVINSFSKYFSMTGWRVGWMVVPED-QVRVVERIAQNMF---------------- 260 (391)
T ss_dssp ECTTTTCBSSSCC-CC-GGGTCSSSEEEEESSSTTCCTTSCCEEEECCGG-GHHHHHHHHHHTT----------------
T ss_pred ECcchhcccCCCC-cC-hhhcCCCEEEEEechhccCCccceeEEEEeCHH-HHHHHHHHHhhhc----------------
Confidence 9999765432211 11 1112235677789999996 4455777776543 3322111000000
Q ss_pred eeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc-eEEEEEEcCCcchhhhhhhhc
Q 046506 159 QITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF-AVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.+.+ ....++.+++. ..+.+++..++..++.+++.+.|+++ ++....++.. ..+.+.+.....
T Consensus 261 ---~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~--------- 325 (391)
T 3h14_A 261 ---ICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYADVSDLTD--------- 325 (391)
T ss_dssp ---CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEEECTTTCS---------
T ss_pred ---cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEEecCccCC---------
Confidence 0000 11122223333 55678889999999999999999887 4443334443 344444543110
Q ss_pred cccchhHHHHHHHHHHHHHHHHhc-CcEEEEEe-EE---CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 237 NSLLSEEERINEFNRELLESINAS-GKAYMTHA-VL---GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~---~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.+.++ |. .+.+. .. .+.+++|+|+.. ++++++.+++.|++++++..
T Consensus 326 -----~-------~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 326 -----D-------SRAFAAEILEKAGV-AVTPGLDFDPERGAGTLRFSYAR---ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp -----C-------HHHHHHHHHHHHCE-ECEEGGGTCTTTGGGEEEEECCS---CHHHHHHHHHHHHHHHHHC-
T ss_pred -----C-------HHHHHHHHHHHCCE-EEcCchhhCCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHhc
Confidence 0 13566666665 64 44432 22 236799999653 68999999999999887643
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=152.28 Aligned_cols=254 Identities=11% Similarity=0.010 Sum_probs=155.6
Q ss_pred eecCCCCCCEEEEecCCCC--------CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTKSS--------SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ 72 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~--------~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~ 72 (310)
+..|.. ++.+|.++++ ++.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++
T Consensus 143 ~~~g~~---~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~ 213 (429)
T 1yiz_A 143 KAAGGI---PRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIINTPHNPLGKVMDRAELEVVANLCKK 213 (429)
T ss_dssp HHTTCE---EEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHcCCE---EEEEeCCcccccccccccCcccCHHHHHHHhccC------ceEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence 345665 8899988642 4679999999999642 457777888999999986 9999999999
Q ss_pred hCcEEEeecccccccccChhhhhh--hcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccc
Q 046506 73 FGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 73 ~g~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~ 148 (310)
||+++++|++|+.+.......... .....+.|++..++||+++.| | +|+++++ +..+....... .+..
T Consensus 214 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~-G~r~G~~~~~-~~~~~~l~~~~-~~~~----- 285 (429)
T 1yiz_A 214 WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLT-GWKIGWAYGP-EALLKNLQMVH-QNCV----- 285 (429)
T ss_dssp HTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCG-GGCCEEEESC-HHHHHHHHHHH-HTTT-----
T ss_pred cCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCC-CcceEEEEeC-HHHHHHHHHHH-hhcc-----
Confidence 999999999997654322111111 111224788999999998733 5 7888765 43332221100 0000
Q ss_pred cccccCCCCceeccCCCcchHHHHHHHHHh----C--HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEE
Q 046506 149 SKQVVDYKDWQITLSRRFRSLKLWFVLRNY----G--VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRV 222 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~--~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~ 222 (310)
+..+ .....++.++++.. + .+.+++..++..++.+++.+.|.++ ++++..+....++.+.+
T Consensus 286 -----------~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~ 352 (429)
T 1yiz_A 286 -----------YTCA-TPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADW 352 (429)
T ss_dssp -----------CCCC-HHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEEC
T ss_pred -----------cCCC-hHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEc
Confidence 0000 01223344445441 3 4467888888999999999999886 78876444455666766
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEe-EEC-------CEeEEEEEccCCCCCHHHHHHH
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHA-VLG-------GIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~-------~~~~iRis~~~~~~t~edi~~l 293 (310)
....... +....... ....++.+.|. +.|. .+.+. .+. +.+++|+|+. +++++|+.+
T Consensus 353 ~~~~~~~-----~~~~~~~~-----~~~~~l~~~l~~~~gv-~v~~g~~f~~~~~~~~~~~~iRis~~---~~~e~i~~~ 418 (429)
T 1yiz_A 353 SSLDSKV-----DLTQETDA-----RKDYRFTKWMTKSVGL-QGIPPSAFYSEPNKHLGEDFVRYCFF---KKDENLQKA 418 (429)
T ss_dssp CSSCTTT-----TCCSSSSS-----CHHHHHHHHHHHHTSE-ECBCGGGGSCGGGGGGTTTEEEEECC---SCHHHHHHH
T ss_pred ccccccc-----cccccccC-----CCHHHHHHHHHHhCCE-EEeCchHhCCCcccCCCCCeEEEEec---CCHHHHHHH
Confidence 5420000 00000000 01135666665 4554 44332 111 2568999965 489999999
Q ss_pred HHHHHHHH
Q 046506 294 WTVVQEHL 301 (310)
Q Consensus 294 i~~l~~~~ 301 (310)
++.|++++
T Consensus 419 l~~l~~~l 426 (429)
T 1yiz_A 419 AEILRKWK 426 (429)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99998764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=146.59 Aligned_cols=240 Identities=16% Similarity=0.141 Sum_probs=140.4
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccCCh---HHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVDTL---KPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~pl---~~I~~l~~~~g~~l~vD 80 (310)
..|.. ++.+ .++ .+.+|+++|+++|++.......+.+|++.+.+|++ |.+.|+ ++|+++|++||+++++|
T Consensus 99 ~~g~~---~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D 172 (347)
T 1jg8_A 99 LSGVM---PHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 172 (347)
T ss_dssp HTCCE---EEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCeE---EEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEee
Confidence 34554 7777 443 34789999999986410000125678888889998 998774 68999999999999999
Q ss_pred ccccccccc--ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 81 AAYAGSACI--CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 81 ~a~~~~~~~--~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
++|..+... ........ .++|.+++++||++++|. |++++.+++.+++.......+ ..
T Consensus 173 ~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~~~~-~~-------------- 232 (347)
T 1jg8_A 173 GARIFNASIASGVPVKEYA---GYADSVMFCLSKGLCAPV--GSVVVGDRDFIERARKARKML-GG-------------- 232 (347)
T ss_dssp ETTHHHHHHHHCCCHHHHH---HTCSEEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHH-TC--------------
T ss_pred hhhhhcchhhcCCChHHhc---ccccEEEEecccccCCCc--eEEEEcCHHHHHHHHHHHHHc-CC--------------
Confidence 998532211 10111111 148999999999998875 444445554443221111000 00
Q ss_pred eeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe-cCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 159 QITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV-FPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
+.+...+..+.+...+ +...+.+++..++++++.+.|+++ ++++. .++..+++.+.+.....
T Consensus 233 ----~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 295 (347)
T 1jg8_A 233 ----GMRQAGVLAAAGIIAL--TKMVDRLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLKV---------- 295 (347)
T ss_dssp ----CCSSTHHHHHHHHHHH--HHSSTTHHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSSS----------
T ss_pred ----chhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccccC----------
Confidence 0001111111111111 111112333445677888888776 66653 34566777776652110
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.|.+.|... .+. +.+.+|+++. ..++++|+++++++|++++++
T Consensus 296 ----~-------~~~~~~~l~~~gi~v-~~~---~~~~iRl~~~-~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 296 ----N-------AHGFIEALRNSGVLA-NAV---SDTEIRLVTH-KDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ----C-------HHHHHHHHHHHTEEC-EEE---ETTEEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred ----C-------HHHHHHHHHHCCCEE-ecC---CCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHh
Confidence 0 135667776776543 332 1357999965 578999999999999988754
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=144.36 Aligned_cols=236 Identities=12% Similarity=0.030 Sum_probs=143.1
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccCChHHH---HHHHHHhCcEEEeec
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVDTLKPL---CDVAKQFGIWVHVDA 81 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~pl~~I---~~l~~~~g~~l~vD~ 81 (310)
.|.. ++.+|.+ .+.+|+++|+++ .+. +.+|++...+|.+ |.+.|++++ +++|++||+++|+|+
T Consensus 112 ~g~~---~~~v~~~---~~~~d~~~l~~~-~~~------~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~ 178 (359)
T 3pj0_A 112 QQIT---PLLLGTA---NQLLTIDDIKSL-REP------VSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDG 178 (359)
T ss_dssp HCCE---EEECSCT---TSCCCHHHHHTC-SSC------CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCce---EEecCCc---CCCcCHHHHHhc-cCC------ceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 4554 7777763 358999999988 222 4467776666665 788776655 999999999999999
Q ss_pred ccccccccCh--hhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
+|..+..... ...... ..+|++++++||++++|.| |++ +.+++.+.........+-....
T Consensus 179 a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~~-~~~~~l~~~~~~~~~~~~~~~~------------- 240 (359)
T 3pj0_A 179 ARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIAG-AIL-AGNDDFVQEAKIWKRRYGGDLI------------- 240 (359)
T ss_dssp TTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSSC-EEE-EECHHHHHHHHHHHHHTTCCCS-------------
T ss_pred cchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcce-EEE-ECCHHHHHHHHHHHHHhCCCcc-------------
Confidence 9864432111 111111 2589999999999998865 444 4556444332110000000000
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe-cCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV-FPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
.. ...+.....+++ ...+.+++..++++++.+.|+++|++++. .++..+.+.+++....
T Consensus 241 -~~--~~~~~a~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------------ 300 (359)
T 3pj0_A 241 -SL--YPYILSADYYFE-----KRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSA------------ 300 (359)
T ss_dssp -CC--HHHHHHHHHHHH-----HHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCH------------
T ss_pred -hh--HHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCcc------------
Confidence 00 001111112222 11245566778899999999999999985 4567788888876531
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEe--EECCEeEEEEEccCC--CCCHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHA--VLGGIYAIRFAAGAT--LTEERHVMVAWTVVQEH 300 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~~~~~~iRis~~~~--~~t~edi~~li~~l~~~ 300 (310)
.....++.+.|.+.|.....+. ...+..++|+++... ..+.++++..++.|.+.
T Consensus 301 --------~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 301 --------DEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp --------HHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred --------chhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1123467777877775433221 225678999987532 25677788777777653
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=151.50 Aligned_cols=247 Identities=14% Similarity=0.079 Sum_probs=155.3
Q ss_pred eecCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~-~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|.+++ +.+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++
T Consensus 128 ~~~g~~---~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (411)
T 2o0r_A 128 AMAGAH---RVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVIT 198 (411)
T ss_dssp HHTTCE---EEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHcCCE---EEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 445665 888998753 23579999999999643 457778888999999877 48999999999999999
Q ss_pred ecccccccccChhhhhh--hcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|++|+.+.......... .....+.|+++.|+||+++.| | +|+++++ +..+....... .+..
T Consensus 199 De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~~-~~~~~~l~~~~-~~~~------------ 263 (411)
T 2o0r_A 199 DEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCT-GWKIGWACGP-AELIAGVRAAK-QYLS------------ 263 (411)
T ss_dssp ECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCT-TTCEEEEECC-HHHHHHHHHHH-HHHT------------
T ss_pred EccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCc-cceEEEEeeC-HHHHHHHHHHH-hhcc------------
Confidence 99998665422110010 111124789999999988733 5 7888764 43332221100 0000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
+..+ .....++.++++. +.++++++.++..++.+++.+.|++. ++++..+....++.+.+....
T Consensus 264 ----~~~~-~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~--------- 327 (411)
T 2o0r_A 264 ----YVGG-APFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLG--------- 327 (411)
T ss_dssp ----SCCC-TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGT---------
T ss_pred ----CCCC-hHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCC---------
Confidence 0000 1222334445543 35678888999999999999999886 888764333335666664310
Q ss_pred ccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE---C----------CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL---G----------GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~---~----------~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..+ ..++.+.+. +.|.....+... . +.+++|+|+. +++++++.+++.|++++
T Consensus 328 ----~~~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~---~~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 328 ----YDD-------STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC---KRDDTLDEAIRRLSVLA 393 (411)
T ss_dssp ----CCC-------HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC---SCHHHHHHHHHHHGGGG
T ss_pred ----CCC-------HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec---CCHHHHHHHHHHHHHHH
Confidence 000 134566665 456433332111 1 3568999964 37999999999998876
Q ss_pred HHH
Q 046506 302 EAL 304 (310)
Q Consensus 302 ~~~ 304 (310)
++.
T Consensus 394 ~~~ 396 (411)
T 2o0r_A 394 ERP 396 (411)
T ss_dssp C--
T ss_pred hcc
Confidence 544
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-17 Score=147.54 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=152.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++. ++.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++|
T Consensus 133 ~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (386)
T 1u08_A 133 ALSGGI---VKRMALQPP-HFRVDWQEFAALLSER------TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISD 202 (386)
T ss_dssp HHTTCE---EEEEECCTT-TCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHcCCE---EEEeecCcc-cCcCCHHHHHHhhccc------CEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEE
Confidence 445665 889998764 3689999999999542 457778888999999886 689999999999999999
Q ss_pred cccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+......+.... .+..+.|+++.++||+++.| ..+|+++++ +..+....... .+...
T Consensus 203 e~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~-~~~~~------------- 267 (386)
T 1u08_A 203 EVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP-APISAEIRKVH-QYLTF------------- 267 (386)
T ss_dssp CTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC-HHHHHHHHHHH-HHHTS-------------
T ss_pred ccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcC-HHHHHHHHHHH-Hhhcc-------------
Confidence 99976543221110000 00124789999999998744 227888765 43332221100 00000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
..+ .....++..+++.. .++++++.++..++.+++.+.|+++ ++++..+....++.+.+.....
T Consensus 268 ---~~~-~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~---------- 331 (386)
T 1u08_A 268 ---SVN-TPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVST---------- 331 (386)
T ss_dssp ---SCC-HHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCC----------
T ss_pred ---CCC-hHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCC----------
Confidence 000 01122333444432 5677888899999999999999987 8887644444566666653100
Q ss_pred ccchhHHHHHHHHHHHHHHHH-hcCcEEEEEe-EE----CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESIN-ASGKAYMTHA-VL----GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~----~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.+ ..++.+.+. +.|. .+.+. .+ .+.+++|+|+. +++++|+.+++.|++
T Consensus 332 ---~~-------~~~~~~~l~~~~gi-~v~~g~~f~~~~~~~~~iRis~~---~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 332 ---LD-------DVEFCQWLTQEHGV-AAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAERLRQ 385 (386)
T ss_dssp ---SC-------HHHHHHHHHHHSCE-ECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHHHTT
T ss_pred ---CC-------HHHHHHHHHHhCCE-EEeCchHhCCCCCCCCEEEEEEc---CCHHHHHHHHHHHhh
Confidence 00 135666665 4564 44432 12 24578999965 479999999998864
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=147.34 Aligned_cols=242 Identities=13% Similarity=0.060 Sum_probs=152.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.+++ +|+++|+++|++. +.++++++++|++|.+.| +++|+++|++||+++++
T Consensus 122 ~~~~g~~---~~~~~~~~~----~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 122 LSATQRE---GIFIDATGG----INLHDVEKGFQAG------ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp HHHHTCC---EEEEECTTS----CCHHHHHHHHHTT------CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCE---EEEccCCCC----CCHHHHHHHhccC------CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456776 999999852 9999999999864 347888889999999876 66777789999999999
Q ss_pred ecccccccccC-hhhhhhhcCC--CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACIC-PEFRHFIDGV--EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~-~~~~~~~~~~--~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|++|+.+.... ..... ...+ ...+.+..+.+|+++.| ...|++++.++.......... .+...
T Consensus 189 De~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-~~~~~----------- 255 (377)
T 3fdb_A 189 DEIHAPLVFDGQHTVAA-GVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS-PVIKD----------- 255 (377)
T ss_dssp ECTTGGGBSSSCCCCGG-GSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC-HHHHC-----------
T ss_pred EcccchhhcCCCCCccc-HHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH-HhhcC-----------
Confidence 99998754432 11111 0110 12347788999999644 456777666665433221111 00000
Q ss_pred CCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
+.-......+.++++ .+.+.++++.++..++.+++.+.|++ +|++++..+....++.+.+.....
T Consensus 256 ------~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 321 (377)
T 3fdb_A 256 ------GASTLGLIAAEAAYR-YGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTI------- 321 (377)
T ss_dssp ------CCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCC-------
T ss_pred ------CCCHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCC-------
Confidence 000011222233333 23566788899999999999999988 789988744333333455543210
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-EC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINAS-GKAYMTHAV-LG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ .++.+.+.++ | +.+.+.. .. +.+++|+|++ +++++++.++++|++++++
T Consensus 322 -------~--------~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~Ris~~---~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 322 -------E--------GSPSEFFIEKAK-VAMNDGAWFGEDGTGFCRLNFA---TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -------C--------SCHHHHHHHHHC-EECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHTT
T ss_pred -------C--------HHHHHHHHHhCC-EEecCChhccCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHhh
Confidence 0 1344555555 5 4444321 11 3578999955 4799999999999887643
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-17 Score=145.36 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=140.7
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccCC---hHHHHHHHHHhCcEEEeecccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVDT---LKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
++.+|.+ .+.+|+++|+++.+ +.++++..++|++ |.+.| +++|+++|++||+++|+|+||.....
T Consensus 115 ~~~v~~~---~~~~d~~~l~~~~~--------~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~ 183 (357)
T 3lws_A 115 TILVGAA---DRLMTLDEIKALPD--------IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEML 183 (357)
T ss_dssp EEECSCT---TSCCCHHHHHTCCS--------CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred EEEecCC---CCCcCHHHHhcCcC--------cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhh
Confidence 6666643 34799999998821 2367777777776 88776 88999999999999999999862211
Q ss_pred c--ChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc
Q 046506 89 I--CPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF 166 (310)
Q Consensus 89 ~--~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (310)
. ........ ..+|.++.++||++++|.| |+++ .+++.+.........+..... .. ..
T Consensus 184 ~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~--~~ 242 (357)
T 3lws_A 184 PYYEKTAAEIA---GLFDSIYISFYKGLGGIAG-AILA-GPAAFCQTARIWKRRYGGDLI--------------SL--YP 242 (357)
T ss_dssp HHHTCCHHHHH---TTSSEEEEESSSTTCCSSC-EEEE-ECHHHHHHHHHHHHHTTCCCS--------------CC--HH
T ss_pred hhcCCChHHHH---hcCCEEEEeccccCCCCce-EEEE-cCHHHHHHHHHHHHHhcCCcc--------------cc--hH
Confidence 1 11111111 2479999999999988877 6654 455444332111000000000 00 00
Q ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe-cCCCceEEEEEEcCCcchhhhhhhhccccchhHHH
Q 046506 167 RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV-FPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEER 245 (310)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (310)
.+....++++ .+.+.+++..++++++.+.|+++|++++. .++.++++.+.+....
T Consensus 243 ~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------------------- 298 (357)
T 3lws_A 243 YIVSADYYYE-----LRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQA------------------- 298 (357)
T ss_dssp HHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCH-------------------
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCCh-------------------
Confidence 1111112222 13344555678889999999999999984 4667888888876531
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCC--CCHHHHHHHHHHHHHH
Q 046506 246 INEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATL--TEERHVMVAWTVVQEH 300 (310)
Q Consensus 246 ~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~--~t~edi~~li~~l~~~ 300 (310)
.....++.+.|.++|.....+... .+..++|+++...+ .++++++..++.|.+.
T Consensus 299 -~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 299 -ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQA 355 (357)
T ss_dssp -HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHh
Confidence 111245667777777543222111 45679999976432 5777888877777654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=148.39 Aligned_cols=243 Identities=10% Similarity=0.038 Sum_probs=150.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH------h
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ------F 73 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~------~ 73 (310)
++..|.. ++.+|.+++ ++.+|+++|++++++. +.+|++++++|++|.+.| +++|+++|++ |
T Consensus 141 ~~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~ 210 (398)
T 3ele_A 141 VNAAGAR---LVEVPADTE-HFQIDFDALEERINAH------TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR 210 (398)
T ss_dssp HHHTTCE---EEEECCCTT-TSSCCHHHHHHTCCTT------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCE---EEEEecCCc-CCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC
Confidence 3456666 899999864 4689999999999653 457788889999999988 7778899999 9
Q ss_pred CcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccc-cccceEEEEEeCchh----HHhhhccCCccccccccc
Q 046506 74 GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSD----LVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 74 g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~----~~~~~~~~~~y~~~~~~~ 148 (310)
|+++++|++|+.+......... .......+++..+++|+++ ....+|++++++... +...+.. +....
T Consensus 211 ~~~li~De~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~---~~~~~--- 283 (398)
T 3ele_A 211 PIFIIADEPYREIVYDGIKVPF-VTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCG---AGRAL--- 283 (398)
T ss_dssp CCEEEEECTTTTCBCTTCCCCC-GGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHH---HHHHT---
T ss_pred CeEEEEeccccccccCCCCcCC-hHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHH---Hhhhc---
Confidence 9999999999765432211111 1112235688899999997 445688888765521 1111100 00000
Q ss_pred cccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcch
Q 046506 149 SKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVM 228 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~ 228 (310)
+......+..+++...+... ...++..++.+++.+.|+++ ++++..+.....+.+.+...+
T Consensus 284 -------------~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-- 344 (398)
T 3ele_A 284 -------------GYVCAPSLFQKMIVKCQGAT---GDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALEDD-- 344 (398)
T ss_dssp -------------TCCCSCHHHHHHHTTCTTCC---CCHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSSC--
T ss_pred -------------cccCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCCC--
Confidence 00001112222222222111 13456667788888888776 777764433333555554321
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
..++.+.+.+.|.....+......+++|+|+. +++++|+.++++|++++++++
T Consensus 345 ---------------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 345 ---------------------SNAFCEKAKEEDVLIVAADGFGCPGWVRISYC---VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp ---------------------HHHHHHHHHTTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------------HHHHHHHHHHCCEEEeCccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHhh
Confidence 13566677777754433332233569999953 689999999999999887653
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-16 Score=143.07 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=153.1
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH-----hCcEE
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ-----FGIWV 77 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~-----~g~~l 77 (310)
.|.. ++.+|.++.+ +.+|+++|+++|++.. ..+.++++++++|++|.+.| +++|+++|++ ||+++
T Consensus 158 ~g~~---~~~~~~~~~~-~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~l 230 (430)
T 2x5f_A 158 NGAN---LQTYPIFDKD-GHYTTDSLVEALQSYN---KDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIA 230 (430)
T ss_dssp TCCE---EEEECCBCTT-SCBCSHHHHHHHHHCC---SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCe---EEEEeccCcc-CCcCHHHHHHHHHhcC---CCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEE
Confidence 5665 8889987632 5799999999997621 12457788888999999998 8999999999 99999
Q ss_pred EeecccccccccChhhhh---hhcCCCCC---Ceeeeecccccccc-cceEEEEE--eCchhHHhhhccCCccccccccc
Q 046506 78 HVDAAYAGSACICPEFRH---FIDGVEGA---DSFSLNAHKWFFTT-LDCCCLWV--KDPSDLVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~---~~~~~~~~---D~~~~~~hK~l~~p-~g~g~l~v--~~~~~~~~~~~~~~~y~~~~~~~ 148 (310)
++|++|+.+......+.. ...+.... +++..++||+++.| ..+|++++ +++..+..............
T Consensus 231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~--- 307 (430)
T 2x5f_A 231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSN--- 307 (430)
T ss_dssp EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTT---
T ss_pred EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcc---
Confidence 999999765443211111 11122234 56789999999755 23688887 24434322211100000000
Q ss_pred cccccCCCCceeccCCCcchHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHc----CCCCeEEecCCCce-EE
Q 046506 149 SKQVVDYKDWQITLSRRFRSLKLWFVLRNYG-----VANLRHFLRSHVNMAKLFERLVG----SDKRFEVVFPRHFA-VV 218 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~-~v 218 (310)
..+ ...+..+++...+. .+.++++.++..++.+++.+.|+ +. ++++.. +..+ .+
T Consensus 308 ------------~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~-~~~g~~~ 371 (430)
T 2x5f_A 308 ------------ISS--GPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYD-FNSGYFM 371 (430)
T ss_dssp ------------TSS--CCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECC-CCBSSEE
T ss_pred ------------cCC--CChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeC-CCceEEE
Confidence 000 11222222222222 12234477888888999999998 54 787764 4444 46
Q ss_pred EEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 219 CFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
.+.+.+.+ ..++.+.|.+ .|. .+.+. +.+++|+|++ . +++++++.++++|
T Consensus 372 ~~~~~~~~-----------------------~~~~~~~l~~~~gi-~v~~g---~~~~iRis~~-~-~~~e~i~~~~~~l 422 (430)
T 2x5f_A 372 AIKVHDVD-----------------------PEALRKHLIDKYSI-GVIAL---NATDIRIAFS-C-VEKDDIPHVFDSI 422 (430)
T ss_dssp EEEESSSC-----------------------HHHHHHHHHHHHCE-ECEEC---SSSEEEEEGG-G-SCGGGHHHHHHHH
T ss_pred EeCCCCCC-----------------------HHHHHHHHHHhCCE-EEecC---CCCeEEEEEe-c-CCHHHHHHHHHHH
Confidence 66665211 1356677776 664 44443 4568999966 3 6899999999999
Q ss_pred HHHHHHH
Q 046506 298 QEHLEAL 304 (310)
Q Consensus 298 ~~~~~~~ 304 (310)
++++.++
T Consensus 423 ~~~l~~~ 429 (430)
T 2x5f_A 423 AKAIDDL 429 (430)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988664
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-16 Score=145.49 Aligned_cols=271 Identities=12% Similarity=0.086 Sum_probs=157.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+++++++++.+|+++|+++|++....+..+.+|++++++|++|.+.+ +++|+++|++||+++++
T Consensus 199 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~ 275 (500)
T 3tcm_A 199 IALHGGA---LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLA 275 (500)
T ss_dssp HHHTTCE---EEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCE---EEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456666 89999998766799999999999986554444667888899999999866 66777789999999999
Q ss_pred ecccccccccCh----hhhhhhcCC----CCCC-eeeeecccccccc--cceEEEEEe--CchhHHhhhccCCccccccc
Q 046506 80 DAAYAGSACICP----EFRHFIDGV----EGAD-SFSLNAHKWFFTT--LDCCCLWVK--DPSDLVNSLSTNPEYLKNKA 146 (310)
Q Consensus 80 D~a~~~~~~~~~----~~~~~~~~~----~~~D-~~~~~~hK~l~~p--~g~g~l~v~--~~~~~~~~~~~~~~y~~~~~ 146 (310)
|.+|+.+.+... ........+ .... ++..|++|+++++ ..+|++.+. ++..+.........+..
T Consensus 276 Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~--- 352 (500)
T 3tcm_A 276 DEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLC--- 352 (500)
T ss_dssp ECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCC---
T ss_pred ecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhcccC---
Confidence 999976544211 111100111 1123 3446999998432 235776652 44333222111000000
Q ss_pred cccccccCCCCceeccCCCcchHHHHHHHHH---------hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE
Q 046506 147 TESKQVVDYKDWQITLSRRFRSLKLWFVLRN---------YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV 217 (310)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~ 217 (310)
+-......+..++.. .-....+++.++..++++++.+.|.++||+++. +++.++
T Consensus 353 ----------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~ 415 (500)
T 3tcm_A 353 ----------------SNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-EAEGAM 415 (500)
T ss_dssp ----------------CCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTT
T ss_pred ----------------CCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEE
Confidence 000111122222210 012345677788889999999999999999876 445544
Q ss_pred EEE-EEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---ECCEeEEEEEccCCCCCHHHHHHH
Q 046506 218 VCF-RVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAV---LGGIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 218 v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~~~~~iRis~~~~~~t~edi~~l 293 (310)
+.| .+..+.- .....+... . ......+.+.+.+.|++...+.. ..+...+|+|+. +++++++.+
T Consensus 416 ~~~~~~~lp~~--~~~~~~~~g--~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~ 483 (500)
T 3tcm_A 416 YVFPQICLPQK--AIEAAKAAN--K-----APDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL---PQEDKIPAV 483 (500)
T ss_dssp EECCEECCCHH--HHHHHHHHT--S-----CHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC---SCTTTHHHH
T ss_pred EEeeeecCchh--hHHHHHhcC--C-----CcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC---CCHHHHHHH
Confidence 443 2332100 000000000 0 00001123444456654443221 235678999955 678899999
Q ss_pred HHHHHHHHHHHhhcc
Q 046506 294 WTVVQEHLEALLSAS 308 (310)
Q Consensus 294 i~~l~~~~~~~~~~~ 308 (310)
+++|+++.+++.++.
T Consensus 484 i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 484 ISRFTVFHEAFMSEY 498 (500)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876543
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-16 Score=145.54 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=155.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEE-EEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFL-CATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v-~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|.+++ .+|+++|+++|+.....+..+.+| ++..++|++|.+.| +++|+++|++||+++++
T Consensus 182 ~~~g~~---~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 182 NFYEPQ---YIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp HTTCCE---EEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHcCCE---EEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 345665 889999863 399999999997321111135555 45677899999887 56899999999999999
Q ss_pred ecccccccccChhhhhhh-cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 80 DAAYAGSACICPEFRHFI-DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~-~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
|++++.+.+......... ....+.+++..+++|+++ | .-+|+++++ +..+.........+..
T Consensus 256 De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~-~~l~~~l~~~~~~~~~-------------- 319 (448)
T 3aow_A 256 DDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGD-PGIIRKMEIAKQSTDL-------------- 319 (448)
T ss_dssp ECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHS--------------
T ss_pred ECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeC-HHHHHHHHHHHHHhcC--------------
Confidence 999987654221110000 011134678889999997 4 237888775 4343322111000000
Q ss_pred ceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcC-CC-CeEEecCCCceEEEEEEcCCcchhhhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGS-DK-RFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~-~~-~~~v~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (310)
+.-.+....+..+++..+ .+.++++.++..++.+++.+.|++ +| ++++..+....++.+.+....
T Consensus 320 ----~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~-------- 387 (448)
T 3aow_A 320 ----CTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGI-------- 387 (448)
T ss_dssp ----SCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTC--------
T ss_pred ----CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCC--------
Confidence 000011222233333211 245667777778889999999986 57 688765545566666664310
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.+.++|.....+... .+.+++|+|+.. .++++|+.+++.|++++++..+
T Consensus 388 -------~-------~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~--~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 388 -------D-------SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY--VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp -------C-------HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS--SCTHHHHHHHHHHHHHHHHHHC
T ss_pred -------C-------HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 0 135677777786544433222 235789999663 4889999999999998876644
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=145.06 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC-cEEEeecc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG-IWVHVDAA 82 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g-~~l~vD~a 82 (310)
+..|+. ++++|.+ |+++|+++|+++ +.+|++.+++|++|.+.|+++|+++|+++| +++++|++
T Consensus 127 ~~~G~~---v~~v~~~-------d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~ 190 (403)
T 3cog_A 127 SEFGLK---ISFVDCS-------KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNT 190 (403)
T ss_dssp GGGTCE---EEEECTT-------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECT
T ss_pred HHcCCE---EEEECCC-------CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECC
Confidence 456665 7777764 689999998753 458888999999999999999999999999 99999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+....+. . .++|+++.|+||++++|.+ +|+++.+++......... ....+
T Consensus 191 ~~~~~~~~~~------~-~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~----~~~~g-------------- 245 (403)
T 3cog_A 191 FMSPYFQRPL------A-LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFL----QNSLG-------------- 245 (403)
T ss_dssp TTCTTTCCTT------T-TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHH----HHHHC--------------
T ss_pred CcccccCCcc------c-cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHH----HHhcC--------------
Confidence 9876532211 1 2589999999999999887 488877665443222110 00000
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCe
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRF 207 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~ 207 (310)
.....+..|.+++.+ +.+..++++..++++.+.+.|++.+.+
T Consensus 246 ---~~~~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~~~~v 287 (403)
T 3cog_A 246 ---AVPSPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLESNPWV 287 (403)
T ss_dssp ---CCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred ---CCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 001223444444333 345556777777777777777665443
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=146.43 Aligned_cols=227 Identities=11% Similarity=0.091 Sum_probs=145.6
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHH--hCcEEEeecc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQ--FGIWVHVDAA 82 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~--~g~~l~vD~a 82 (310)
..|+. +++++.+ |+++|+++|+++ +.+|++.+.+|++|.+.|+++|+++|++ +|+++++|++
T Consensus 144 ~~G~~---v~~v~~~-------d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 144 KLGVT---TSWFDPL-------IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp GGTCE---EEEECTT-------CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECT
T ss_pred HcCcE---EEEECCC-------CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECC
Confidence 34665 7777543 678999999764 4588889999999999999999999999 9999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+....+. . .++|+++.|+||+++++.+ .|+++.++. .+....... ..
T Consensus 208 ~a~~~~~~p~------~-~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~-~~------------------- 259 (415)
T 2fq6_A 208 WAAGVLFKAL------D-FGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENA-YL------------------- 259 (415)
T ss_dssp TTTTTSSCGG------G-GTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHH-HH-------------------
T ss_pred CcccccCCcc------c-cCCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHH-Hh-------------------
Confidence 9865332221 1 1589999999999987754 577776544 333221100 00
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe-cC----------------CCceEEEEEEc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVV-FP----------------RHFAVVCFRVS 223 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~----------------~~~~~v~~~~~ 223 (310)
.+........|..++ +.+.+..++++..++++.+++.|.+.|.+.-+ -+ ...++++|.+.
T Consensus 260 -~G~~~~~~~a~~~~~--~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~ 336 (415)
T 2fq6_A 260 -MGQMVDADTAYITSR--GLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK 336 (415)
T ss_dssp -TTCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES
T ss_pred -cCCCCCHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 000112223333333 34567778888899999999999988776532 11 13578899887
Q ss_pred CC-cchhhhhhhhccccchhHHHHHHHHHHHHHHHHh------cCcE---EEE--E---e------EEC-CEeEEEEEcc
Q 046506 224 PS-AVMDKLKTKYENSLLSEEERINEFNRELLESINA------SGKA---YMT--H---A------VLG-GIYAIRFAAG 281 (310)
Q Consensus 224 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~g~~---~~~--~---~------~~~-~~~~iRis~~ 281 (310)
+. + ......+.+.+.. .|.. ... | + ..+ ..+.||+|+.
T Consensus 337 g~~~--------------------~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G 396 (415)
T 2fq6_A 337 KKLN--------------------NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIG 396 (415)
T ss_dssp SCCC--------------------HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECC
T ss_pred CCCC--------------------HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEec
Confidence 52 1 0111223332211 1211 111 1 0 011 2479999977
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 046506 282 ATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 282 ~~~~t~edi~~li~~l~~ 299 (310)
+.+++++|+.+.++|++
T Consensus 397 -~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 397 -LEDVDDLIADLDAGFAR 413 (415)
T ss_dssp -SSCHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 68999999999999874
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=144.69 Aligned_cols=251 Identities=11% Similarity=0.042 Sum_probs=151.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. ++.++++++ ++.+|+++|+++|++. +.+|++++ ++|.+.++++|+++|++||+++++|++
T Consensus 107 ~~~~G~~---~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea 173 (424)
T 2po3_A 107 LRWIGLT---PVFADIDPD-TGNLDPDQVAAAVTPR------TSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAA 173 (424)
T ss_dssp HHHTTCE---EEEECBCTT-TSSBCHHHHGGGCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCE---EEEEecCCC-cCCcCHHHHHHhhCcC------CcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECc
Confidence 3456776 899999863 4689999999998653 44555543 689999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecc--cccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+..... .. ... ..|+++.|+| |++++ ..+|+++.++++.+....... .+.... .+... ..
T Consensus 174 ~~~g~~~~~--~~-~~~--~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~-~~~~~~------~~~~~--~~ 238 (424)
T 2po3_A 174 HALGCAVDG--RP-AGS--LGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALH-NFGFDL------PGGSP--AG 238 (424)
T ss_dssp TCTTCEETT--EE-TTS--SSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHH-BTTTTC------TTCCT--TC
T ss_pred cccCCeECC--ee-ccc--ccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHH-hcCccc------ccccc--cc
Confidence 985443211 11 111 2578778876 88765 445666655454433221110 000000 00000 00
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----ceEEEEEEcCCcchhhhhhhh
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----FAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~~~~~~~~~~~~~~~~~ 235 (310)
....+...+..+.++. ..++++++.++..++++++.+.|.++|++++..++. ..++.+.+.+..
T Consensus 239 g~~~~~~~~~aa~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~--------- 307 (424)
T 2po3_A 239 GTNAKMSEAAAAMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEAT--------- 307 (424)
T ss_dssp CCBCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHH---------
T ss_pred CcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCcc---------
Confidence 1111233333333333 245678888899999999999999988998875332 134555554200
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-C--------------CE-------eEEEEEccCCCCCHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL-G--------------GI-------YAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~--------------~~-------~~iRis~~~~~~t~edi~~l 293 (310)
......++.+.|.+.|. .+.+... . .. ..+|++++ .+++++|++++
T Consensus 308 ----------~~~~~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~-~~~t~e~i~~~ 375 (424)
T 2po3_A 308 ----------TGIHRDLVMEVLKAEGV-HTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTG-TAIGDDDIRRV 375 (424)
T ss_dssp ----------HSSCHHHHHHHHHHTTE-ECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCS-TTCCHHHHHHH
T ss_pred ----------chhhHHHHHHHHHHCCC-ceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCC-CCCCHHHHHHH
Confidence 00001356666767764 3332110 0 00 12788744 68999999999
Q ss_pred HHHHHHHHHHH
Q 046506 294 WTVVQEHLEAL 304 (310)
Q Consensus 294 i~~l~~~~~~~ 304 (310)
+++|++++...
T Consensus 376 ~~~L~~~~~~~ 386 (424)
T 2po3_A 376 ADLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999888654
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=147.18 Aligned_cols=257 Identities=12% Similarity=0.036 Sum_probs=154.6
Q ss_pred eecCCCCCCEEEEecCC----C------CCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC---ChHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTK----S------SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD---TLKPLCDVA 70 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~----~------~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---pl~~I~~l~ 70 (310)
...|.. ++.+|.++ + .++.+|+++|++++++. +.+|++++++|++|.+. ++++|+++|
T Consensus 133 ~~~g~~---~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~ 203 (422)
T 3fvs_A 133 MMAGGR---PVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVLNTPNNPLGKVFSREELELVASLC 203 (422)
T ss_dssp HHTTCE---EEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCE---EEEEecccccccccccccccCCCCCHHHHHhhcCCC------ceEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence 345665 88899875 2 25679999999998653 45788888999999998 499999999
Q ss_pred HHhCcEEEeecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccc
Q 046506 71 KQFGIWVHVDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKAT 147 (310)
Q Consensus 71 ~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~ 147 (310)
++||+++++|++|+.+........... ......+++..|++|+++.| ..+|+++.+++ .+............
T Consensus 204 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~---- 278 (422)
T 3fvs_A 204 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVF---- 278 (422)
T ss_dssp HHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHH-HHHHHHHHHHTTTC----
T ss_pred HHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHH-HHHHHHHHHhhccC----
Confidence 999999999999976543221111100 00112447788999999744 45787765433 33222110000000
Q ss_pred ccccccCCCCceeccCCCcchHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEE
Q 046506 148 ESKQVVDYKDWQITLSRRFRSLKLWFVLRN------YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR 221 (310)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~ 221 (310)
+.-.....++.++++. ...+.++++.++..++.+++.+.|+++ ++++..+.....+.+.
T Consensus 279 --------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 343 (422)
T 3fvs_A 279 --------------HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITD 343 (422)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEE
T ss_pred --------------CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEe
Confidence 0000122233333432 124567888899999999999999987 8887755555555555
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeE-E-------CCEeEEEEEccCCCCCHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAV-L-------GGIYAIRFAAGATLTEERHVMV 292 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~-~-------~~~~~iRis~~~~~~t~edi~~ 292 (310)
+..... .....+.... .....++...+.+ .| +.+.+.. . .+.+++|+|+.. ++++++.
T Consensus 344 ~~~~~~-------~~~~~~~~~~--~~~~~~~~~~ll~~~g-v~v~~g~~f~~~~~~~~~~~~iRis~~~---~~e~i~~ 410 (422)
T 3fvs_A 344 ISDFKR-------KMPDLPGAVD--EPYDRRFVKWMIKNKG-LVAIPVSIFYSVPHQKHFDHYIRFCFVK---DEATLQA 410 (422)
T ss_dssp CHHHHH-------HCCCCCCCTT--CCHHHHHHHHHHHHHC-EECEEGGGGSCHHHHTTSCSEEEEECCC---CHHHHHH
T ss_pred chhhcc-------cccccccccc--cccHHHHHHHHHHhcC-EEEeCcHHhcCCcCCCCCCCeEEEEecC---CHHHHHH
Confidence 543100 0000000000 0002345555444 45 4444421 1 246899999553 8999999
Q ss_pred HHHHHHHHHH
Q 046506 293 AWTVVQEHLE 302 (310)
Q Consensus 293 li~~l~~~~~ 302 (310)
+++.|+++++
T Consensus 411 ~l~~l~~~l~ 420 (422)
T 3fvs_A 411 MDEKLRKWKV 420 (422)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-16 Score=139.39 Aligned_cols=228 Identities=10% Similarity=0.098 Sum_probs=146.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHH---HHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPL---CDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I---~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++ ++.+|+++|+++++ . +.+|++++++|++|.+.|.++| +++|+ +|+++++|
T Consensus 118 ~~~g~~---~~~v~~~~--~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~D 184 (356)
T 1fg7_A 118 ETIGVE---CRTVPTLD--NWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVAD 184 (356)
T ss_dssp HHHTCE---EEECCCCT--TSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEE
T ss_pred HHcCCE---EEEeeCCC--CCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEE
Confidence 345665 88888874 35799999999886 2 4578888899999999886555 55566 99999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++|+.+.. .......... ...+++..+++|+++.| ..+|++++ +++.+.........|
T Consensus 185 e~~~~~~~-~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~------------------ 243 (356)
T 1fg7_A 185 EAYIEFCP-QASLAGWLAE-YPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPY------------------ 243 (356)
T ss_dssp CTTGGGSG-GGCSGGGTTT-CTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSS------------------
T ss_pred ccchhhcC-CCcHHHHHhh-CCCEEEEecchHhhcCchhhhEEEEe-CHHHHHHHHHhcCCC------------------
Confidence 99976541 1111111111 23567889999998744 23688877 444433221111111
Q ss_pred eccCCCcchHHHHHHHHHhCHHH---HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVAN---LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
....+...++...+...+ +++..++..++.+++.+.|++++++....++..+.+.+.+..
T Consensus 244 -----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~------------ 306 (356)
T 1fg7_A 244 -----PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA------------ 306 (356)
T ss_dssp -----CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT------------
T ss_pred -----CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECCC------------
Confidence 012333444555554433 677888889999999999998876533445566777666641
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEE-eE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTH-AV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..++.+.|.+.|. .+.+ .. ....+++|+|+. +++|+++++++|+++
T Consensus 307 -------------~~~l~~~L~~~gI-~v~~~g~~~~~~~~iRis~~----~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 307 -------------SSAVFKSLWDQGI-ILRDQNKQPSLSGCLRITVG----TREESQRVIDALRAE 354 (356)
T ss_dssp -------------HHHHHHHHHHTTE-ECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHTC
T ss_pred -------------HHHHHHHHHHCCE-EEEECCCCCCCCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence 1356777766764 4443 21 112358999954 488999999998753
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=145.11 Aligned_cols=258 Identities=13% Similarity=0.098 Sum_probs=149.8
Q ss_pred eecCCCCCCEEEEecCCC----C----CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCC-cccccCC---hHHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTKS----S----SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTT-AITAVDT---LKPLCDVAK 71 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~----~----~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~p---l~~I~~l~~ 71 (310)
...|.. ++.++++++ . ++.+|+++|+++|++.+.. .+.+|+++..+| .+|.+.| +++|+++|+
T Consensus 131 ~~~G~~---~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~--~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~ 205 (456)
T 2ez2_A 131 EKNGAV---FVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE--NIAYICLAVTVNLAGGQPVSMANMRAVRELTE 205 (456)
T ss_dssp HHTTCE---EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred HHcCCE---EEEecccccccccccccccCCCCHHHHHHHHHhcccc--ceeEEEEeccCCCCCCccCCHHHHHHHHHHHH
Confidence 345665 888888731 1 2579999999999875411 134677776666 8998877 999999999
Q ss_pred HhCcEEEeeccccccc--------ccChhhh--h---hhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccC
Q 046506 72 QFGIWVHVDAAYAGSA--------CICPEFR--H---FIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN 138 (310)
Q Consensus 72 ~~g~~l~vD~a~~~~~--------~~~~~~~--~---~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~ 138 (310)
+||+++++|++|+.+. ....... . ... ...|++++|+||+++.| .+|+++.+++..+.......
T Consensus 206 ~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~ 282 (456)
T 2ez2_A 206 AHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF--SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELV 282 (456)
T ss_dssp HTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH--TTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHH
T ss_pred HcCCeEEEEccccccccccccccccccCCcchhhhhhhhc--ccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHH
Confidence 9999999999997641 1111100 0 001 13789989999987744 35666665554433221111
Q ss_pred CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceE
Q 046506 139 PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL-RHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAV 217 (310)
Q Consensus 139 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~ 217 (310)
..+.. .. ...+.+...+.. .++... +.+ ++..++..++++++.+.|.+. ++++..+.....
T Consensus 283 ~~~~~-~~-------------~~~~~~~~~~~a-~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~ 344 (456)
T 2ez2_A 283 VVYEG-MP-------------SYGGLAGRDMEA-MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHA 344 (456)
T ss_dssp HHHTC-CT-------------TTTTCCHHHHHH-HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSE
T ss_pred hhccC-cc-------------cccCcchhHHHH-HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceE
Confidence 01000 00 001111111111 011111 233 466677778889999999875 777665545555
Q ss_pred EEEEEcC--CcchhhhhhhhccccchhHHHHHHH-HHHHHHHH-HhcCcEEEEEeE-------------ECCEeEEEEEc
Q 046506 218 VCFRVSP--SAVMDKLKTKYENSLLSEEERINEF-NRELLESI-NASGKAYMTHAV-------------LGGIYAIRFAA 280 (310)
Q Consensus 218 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~-------------~~~~~~iRis~ 280 (310)
+.+.+.. ... +. ..+ .+.+.+.| .+.|........ ..+.+.+|+|+
T Consensus 345 ~~~~~~~~~~~~--------------~~---~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~ 407 (456)
T 2ez2_A 345 VFLDARRFCEHL--------------TQ---DEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTI 407 (456)
T ss_dssp EEEEHHHHTTTS--------------CG---GGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred EEEEhHHhcCCC--------------Ch---hhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEe
Confidence 5555431 100 00 111 23445556 455643333111 11246899997
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 281 GATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 281 ~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.+.++++|+++++++|++++.+.
T Consensus 408 ~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 408 PRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhh
Confidence 743389999999999999988664
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=144.27 Aligned_cols=228 Identities=15% Similarity=0.173 Sum_probs=144.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh----CcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF----GIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~----g~~l~v 79 (310)
+..|+. ++++|.+ | ++|+++|++. +.+|++.+.+|++|.+.|+++|+++|++| |+++|+
T Consensus 115 ~~~G~~---v~~v~~~-------d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 115 NAHGVE---TSFTNDL-------L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp TTTCSC---CEEESSH-------H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEE
T ss_pred HHcCcE---EEEeCCC-------h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEE
Confidence 345665 7777764 5 7888888643 55888899999999999999999999999 999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccccc--e-EEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--C-CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~-g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|++|+.+..... ... ++|+++.|+||+++++ | . |+++.+++..+....... .
T Consensus 178 D~a~~~~~~~~~------~~~-~~di~~~S~sK~~g~~-G~rigG~~~~~~~~~~~~l~~~~----~------------- 232 (393)
T 1n8p_A 178 DNTFLSPYISNP------LNF-GADIVVHSATKYINGH-SDVVLGVLATNNKPLYERLQFLQ----N------------- 232 (393)
T ss_dssp ECTTTHHHHCCG------GGG-TCSEEEEETTTTTTCS-SCCCCEEEEESCHHHHHHHHHHH----H-------------
T ss_pred eCCccccccCCH------HHc-CCeEEEEECcccccCC-CCceeEEEEeCCHHHHHHHHHHH----H-------------
Confidence 999987765311 111 5899999999998754 5 5 666665554443221110 0
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC-eEEe-cC-----C------------C-ce
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR-FEVV-FP-----R------------H-FA 216 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~-~~v~-~~-----~------------~-~~ 216 (310)
..+........+..+..+ +.+..++++..++++.+.+.|.+.+. +.-+ .+ + . .+
T Consensus 233 ----~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1n8p_A 233 ----AIGAIPSPFDAWLTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGG 306 (393)
T ss_dssp ----HHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCS
T ss_pred ----hcCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCcc
Confidence 000111223333333322 34566778888889999999988766 5422 11 1 2 56
Q ss_pred EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh------cCcEE---EEEe--EE----------CC--E
Q 046506 217 VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA------SGKAY---MTHA--VL----------GG--I 273 (310)
Q Consensus 217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~g~~~---~~~~--~~----------~~--~ 273 (310)
+++|.+.+. ......+.+.+.. .|..+ ..+. .. .+ .
T Consensus 307 i~~~~l~~~---------------------~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~ 365 (393)
T 1n8p_A 307 MISFRIKGG---------------------AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFD 365 (393)
T ss_dssp EEEEEESSC---------------------HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCT
T ss_pred EEEEEeCCc---------------------HHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCC
Confidence 888888652 1112334444322 12111 1000 00 11 4
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 274 YAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 274 ~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+.||+|+. ..+++++|+.+.++|+++.
T Consensus 366 ~~iRlS~g-~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 366 DLVRISVG-IEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp TEEEEECC-SSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEc-cCCHHHHHHHHHHHHHHhh
Confidence 79999976 6899999999999998753
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=147.75 Aligned_cols=248 Identities=12% Similarity=0.064 Sum_probs=152.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
...|.. ++.+|.++++.+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++|
T Consensus 141 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 211 (412)
T 2x5d_A 141 VIAGAQ---VRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHD 211 (412)
T ss_dssp HHHTCE---EEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCE---EEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 345665 88899886433558999999988632 346777788899999877 688999999999999999
Q ss_pred cccccccccChhhhhh--hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+.......... .....+.|+++.++||+++.| ..+|+++++ +..+....... .+...
T Consensus 212 e~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~-~~~~~------------- 276 (412)
T 2x5d_A 212 LAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN-PELVSALARIK-SYHDY------------- 276 (412)
T ss_dssp CTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC-HHHHHHHHHHH-HHHCC-------------
T ss_pred ccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC-HHHHHHHHHHH-hhhcc-------------
Confidence 9998765422111110 111124688999999999744 347888774 43332221100 00000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcchhhhhhhhc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~ 236 (310)
. .-.....++.++++ .+.++++++.++..++.+++.+.|+++ ++++. ++..+ ++.+.+... .
T Consensus 277 ---~-~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g~~~~~~~~~~-~--------- 339 (412)
T 2x5d_A 277 ---G-TFTPLQVAAIAALE-GDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE-NPKASMYVWAKIPEP-Y--------- 339 (412)
T ss_dssp ---C-CCHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-CCSBSSEEEEECCTT-T---------
T ss_pred ---C-CCHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec-CCCeeeEEEEEcCCc-c---------
Confidence 0 00011222233333 234567888899999999999999876 77765 34444 455555321 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
. .....++.+.|.+ .|.....+.... +.+++|+|++. ++++++.+++.|++++.++
T Consensus 340 -----~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 340 -----A----HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE---NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp -----G----GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHHHT
T ss_pred -----C----CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHhc
Confidence 0 0001356666654 464433322211 24689999652 7899999999999988765
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=145.71 Aligned_cols=242 Identities=15% Similarity=0.069 Sum_probs=148.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+++.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++|
T Consensus 133 ~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 203 (385)
T 1b5p_A 133 RFAGGV---VVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD 203 (385)
T ss_dssp HHTTCE---EEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCE---EEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 445666 89999986324689999999998653 457788889999999877 899999999999999999
Q ss_pred cccccccccChhhhhhhcCC-CCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHFIDGV-EGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++++.+.... .... ...+ ...+++..+++|+++.| | +|+++++ +..+....... .+... .
T Consensus 204 e~~~~~~~~~-~~~~-~~~~~~~~~i~~~s~SK~~~~~-G~RiG~~~~~-~~~~~~l~~~~-~~~~~-~----------- 266 (385)
T 1b5p_A 204 EIYEHLLYEG-EHFS-PGRVAPEHTLTVNGAAKAFAMT-GWRIGYACGP-KEVIKAMASVS-RQSTT-S----------- 266 (385)
T ss_dssp CTTTTCBSSS-CCCC-GGGTCTTTEEEEEESTTTTTCG-GGCCEEEECC-HHHHHHHHHHH-HTTTC-S-----------
T ss_pred ccchhcccCC-CCCC-HHHcCCCCEEEEEechhhcCCc-ccceEEEEeC-HHHHHHHHHHH-hhccC-C-----------
Confidence 9997654321 1100 0111 13567888999998755 5 7888764 43332221110 00000 0
Q ss_pred ceeccCCCcchHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRN--YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.-......+.++++. .+.+.+++..++..++.+++.+.|+++ ++++..+.....+...+.....
T Consensus 267 -----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-------- 332 (385)
T 1b5p_A 267 -----PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAP-------- 332 (385)
T ss_dssp -----CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCS--------
T ss_pred -----CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCCCC--------
Confidence 000111222223321 024557778888888899999999887 7776533333334344431100
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+ ..++.+.|.+.|.....+......+++|+|+. +++++++.+++.|++.+
T Consensus 333 ------~-------~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~---~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 333 ------D-------EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEENLRKALERFARVL 382 (385)
T ss_dssp ------S-------HHHHHHHHHHTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHGGGGC
T ss_pred ------C-------HHHHHHHHHHCCeEEecccccCCCCeEEEEec---CCHHHHHHHHHHHHHHH
Confidence 0 13566777766644333222222468999954 68889999998887654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=148.58 Aligned_cols=245 Identities=13% Similarity=0.086 Sum_probs=138.2
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccC---ChHHHHHHHHHhCcEEEeeccccc-ccc----------
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVD---TLKPLCDVAKQFGIWVHVDAAYAG-SAC---------- 88 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~---pl~~I~~l~~~~g~~l~vD~a~~~-~~~---------- 88 (310)
+.+|+++|+++|++... ..+.+|+++..+|++ |.+. ++++|+++|++||+++|+|++|+. +.+
T Consensus 165 ~~~d~~~le~~i~~~~~--~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~ 242 (467)
T 1ax4_A 165 GDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 242 (467)
T ss_dssp TCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGT
T ss_pred cccCHHHHHHHHHhcCC--CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccC
Confidence 47999999999986420 014578888888888 7764 478999999999999999999765 221
Q ss_pred cChhhhhhhcC-CCCCCeeeeecccccccccceEEEEEeCc-hhHHhhhccCCccccccccccccccCCCCceeccCCCc
Q 046506 89 ICPEFRHFIDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDP-SDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF 166 (310)
Q Consensus 89 ~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (310)
..+ ......+ ...+|++++++||+++.|.| |+++.+++ +.+.........+ . ... . .++...
T Consensus 243 ~~~-~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-~-~~~---------~---~~~~~~ 306 (467)
T 1ax4_A 243 NAT-IKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM-E-GFV---------T---YGGLAG 306 (467)
T ss_dssp TCC-HHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH-T-CST---------T---TTTCCH
T ss_pred CCc-hhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc-c-ccc---------c---cCCccc
Confidence 110 0000000 02478999999999987754 55555535 4443221111111 0 000 0 011111
Q ss_pred ch-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHH
Q 046506 167 RS-LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEER 245 (310)
Q Consensus 167 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (310)
.. .++..+++.... ++.+++..++++++.+.|.+ +++++..+.....+.+.+.... . . ....
T Consensus 307 ~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~-~------~-----~~~~- 369 (467)
T 1ax4_A 307 RDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLV-P------Q-----IPGD- 369 (467)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTC-T------T-----SCGG-
T ss_pred hHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhc-c------c-----cccC-
Confidence 11 112223332211 22444445677888888877 5777765555555655521100 0 0 0000
Q ss_pred HHHHHHHHHHHH-HhcCcEEEEEeEE--------C-----CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 246 INEFNRELLESI-NASGKAYMTHAVL--------G-----GIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 246 ~~~~~~~l~~~l-~~~g~~~~~~~~~--------~-----~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..-..++.+.| .+.|......... + ..+.+|+|+....+|++|+++++++|+++++.+
T Consensus 370 -~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 370 -QFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp -GCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred -CCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 00124566777 6666443331110 0 137999997744489999999999999988765
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=140.55 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=122.6
Q ss_pred eecCCCCCCEEEE-ecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 4 QIVGIDVKNFRAI-KTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 4 ~~~g~~~~~v~~v-~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
...|+. ++++ +.+ |+++|+++|++. +.+|++++.+|++|.+.|+++|+++|++||+++++|++
T Consensus 119 ~~~g~~---~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~ 182 (421)
T 2ctz_A 119 KRLGIE---VRFTSREE-------RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182 (421)
T ss_dssp HHTTCE---EEECCTTC-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECG
T ss_pred HHcCCE---EEEECCCC-------CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 344555 6666 442 789999999764 45888999999999999999999999999999999999
Q ss_pred c-ccccccChhhhhhhcCCCCCCeeeeecccccccccc-eEEEEEeC--chh----HHhhhccCCcccccccccccc---
Q 046506 83 Y-AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD-CCCLWVKD--PSD----LVNSLSTNPEYLKNKATESKQ--- 151 (310)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~v~~--~~~----~~~~~~~~~~y~~~~~~~~~~--- 151 (310)
| +.+.. .... . .++|++++|+||++++|.+ .|++++.+ ..+ +.......+.+..........
T Consensus 183 ~~~~g~~-~~~~-----~-~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~ 255 (421)
T 2ctz_A 183 FGMGGYL-LRPL-----A-WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELA 255 (421)
T ss_dssp GGGGGTS-CCGG-----G-GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGH
T ss_pred ccccccc-CCcc-----c-cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhH
Confidence 9 76532 2111 1 1489999999999998764 67777763 221 111111111111110000000
Q ss_pred ccCC-C-CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-C----------------
Q 046506 152 VVDY-K-DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-P---------------- 212 (310)
Q Consensus 152 ~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~---------------- 212 (310)
.... + ......+.....+.+|..+. +.+.+..++++..++++++.+.|+++|++..+. +
T Consensus 256 ~~~~~r~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~ 333 (421)
T 2ctz_A 256 FIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFK 333 (421)
T ss_dssp HHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhcc
Confidence 0000 0 00000122233444444433 334566778888899999999999999998763 1
Q ss_pred -CCceEEEEEEcC
Q 046506 213 -RHFAVVCFRVSP 224 (310)
Q Consensus 213 -~~~~~v~~~~~~ 224 (310)
...++++|.+.+
T Consensus 334 ~~~g~ivsf~l~~ 346 (421)
T 2ctz_A 334 GKPGAVLTFGLKG 346 (421)
T ss_dssp TCCCSEEEEEETT
T ss_pred CCCceEEEEEeCC
Confidence 235688998865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=143.64 Aligned_cols=237 Identities=11% Similarity=0.034 Sum_probs=148.2
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|. ++ .+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++|
T Consensus 129 ~~~g~~---~~~~~~-~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 197 (376)
T 2dou_A 129 RVASLR---TFLIPL-RE-DGLADLKAVPEGVWRE------AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHD 197 (376)
T ss_dssp HHTTCE---EEEECB-CT-TSSBCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCE---EEEeeC-CC-CCCCCHHHHHHhhccC------ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 345665 888888 33 4579999999999653 457777788899999877 678999999999999999
Q ss_pred cccccccccChhhhhhhc--CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+..... ...... +....+++..++||+++.| ..+|+++. ++..+.........+..
T Consensus 198 e~~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~-------------- 261 (376)
T 2dou_A 198 NPYVDQVYEGE-APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG-SEEALARLERVKGVIDF-------------- 261 (376)
T ss_dssp CTTGGGBSSSC-CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE-CHHHHHHHHHHHHHHCC--------------
T ss_pred ccchhcccCCC-CCChhhcCCCCCcEEEEecchhhcCChhheeEEEec-CHHHHHHHHHHHHhccc--------------
Confidence 99986653221 000011 1113567889999999744 34687765 44443222111000000
Q ss_pred ceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhcc
Q 046506 158 WQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
..+ .....++.++++. +.+.+++..++..++.+++.+.|.++ +++..+.....+.+.+....
T Consensus 262 ---~~~-~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~----------- 323 (376)
T 2dou_A 262 ---NQY-AGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGV----------- 323 (376)
T ss_dssp ---CSC-HHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTC-----------
T ss_pred ---CCC-HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCC-----------
Confidence 000 0112222333332 25677888889999999999999886 66653333334556554310
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHA-VLG--GIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ..++.+.|.++|. .+.+. ... +.+++|+|++ .++++++.+++.|+++
T Consensus 324 ----~-------~~~~~~~l~~~gi-~v~~g~~f~~~~~~~~Ris~~---~~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 324 ----D-------DLEFGLRLVERGV-ALAPGRGFGPGGKGFVRIALV---RPLEELLEAAKRIREA 374 (376)
T ss_dssp ----C-------HHHHHHHHHHTTE-ECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHT
T ss_pred ----C-------HHHHHHHHHHCCE-EEcCchhhCCCCCCeEEEEec---CCHHHHHHHHHHHHHH
Confidence 0 1356777777764 44432 111 2468999965 2789999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-16 Score=138.36 Aligned_cols=226 Identities=11% Similarity=0.039 Sum_probs=147.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|+. ++.+|.+++ +.+|+++|+++. . +.++++.+++|++|.+.|++++.++|+++++ +++|++
T Consensus 107 ~~~~g~~---~~~v~~~~~--~~~d~~~l~~~~--~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea 172 (337)
T 3p1t_A 107 IAVSGLR---HFEIGLTDD--LLLDPNDLAQVS--R------DDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDET 172 (337)
T ss_dssp HTTSCCE---EEEECBCTT--SSBCHHHHTTCC--T------TEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECT
T ss_pred HHHcCCE---EEEecCCCC--CCCCHHHHHhhc--C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECC
Confidence 3455666 889998863 589999998762 1 4588899999999999999999999999997 667999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
|+........ .......+++..|++|+++ ...++|+++. ++..+....... . ...
T Consensus 173 ~~~~~~~~~~----~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~-~---~~~--------------- 228 (337)
T 3p1t_A 173 YVDYSSFRAR----GLAYGENELVFRSFSKSYGLAGLRLGALFG-PSELIAAMKRKQ-W---FCN--------------- 228 (337)
T ss_dssp TGGGSSCSSS----CCCCBTTEEEEEESSSTTCCTTTCCEEEEC-CHHHHHHHHTTS-C---TTC---------------
T ss_pred Chhhcccccc----ccccCCCEEEEeeCchhccCcchheEEEEe-CHHHHHHHHhhc-C---CCC---------------
Confidence 9753321110 1112246788999999997 3455677765 443433221110 0 000
Q ss_pred cCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 162 LSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
...+...++...+. .+.+++.+++..++.+++.+.|+++ ++++. ++..+++.+.....
T Consensus 229 ----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~--------------- 287 (337)
T 3p1t_A 229 ----VGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA-SSEANFVLVENAAG--------------- 287 (337)
T ss_dssp ----SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEEEECTTT---------------
T ss_pred ----CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEEEEcCCH---------------
Confidence 11222222333332 2456778888888899999999887 77765 45666666654332
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.|.+.|.....+......+++|+|++ +++|+++++++|+++.
T Consensus 288 ----------~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~----~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 288 ----------ERTLRFLRERGIQVKDAGQFGLHHHIRISIG----REEDNDRLLAALAEYS 334 (337)
T ss_dssp ----------HHHHHHHHHTTEECEEGGGGTCCSEEEEECC----CHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHCCeEEEECccCCCCCeEEEecC----CHHHHHHHHHHHHHHh
Confidence 2455666677644333322233579999944 6899999999998865
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=145.63 Aligned_cols=250 Identities=12% Similarity=0.052 Sum_probs=147.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHH-HHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKI-NSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i-~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
...|.. +++++++++ ++.+|+++|+++| ++..+ +.+|+ .++++|.+.|+++|+++|+ ||+++++|++
T Consensus 96 ~~~G~~---~~~v~~~~~-~~~~d~~~l~~~i~~~~~~----tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a 163 (377)
T 3ju7_A 96 IWCGLE---PYFIDISID-DWYMDKTVLWDKIEELKEE----VAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAA 163 (377)
T ss_dssp HHTTCE---EEEECBCTT-TCSBCHHHHHHHHHHHGGG----EEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECT
T ss_pred HHcCCE---EEEEecCCc-cCCcCHHHHHHHHhcCCCC----ceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECC
Confidence 456776 899999864 5789999999999 44311 23444 3456899999999999999 9999999999
Q ss_pred cccccccChhhhhhh-cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
|+.+...... . . ....+++++++++||++++ ...|+++++++....+..... .+ +... .+ ....
T Consensus 164 ~a~g~~~~~~--~-~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~-~~--g~~~------~~--~~~~ 228 (377)
T 3ju7_A 164 PGFGLMNGGM--H-YGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMG-NF--GFDT------NR--ECTM 228 (377)
T ss_dssp TCTTCEETTE--E-TTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHT-BT--TBCT------TS--CBCS
T ss_pred CccCCeECCE--e-ccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHH-hc--CCCC------CC--ceee
Confidence 9866542211 1 1 1122456677778999987 355666666665433221111 00 0000 00 0011
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE-ecCCC----c-eEEEEEEcCCcchhhhhhhh
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEV-VFPRH----F-AVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v-~~~~~----~-~~v~~~~~~~~~~~~~~~~~ 235 (310)
.+.++....+.+++.....+.++++.++..++++++.+.|.+++++.+ ..++. . ..+.+.+....
T Consensus 229 ~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 299 (377)
T 3ju7_A 229 MGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV--------- 299 (377)
T ss_dssp SCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS---------
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh---------
Confidence 122222222333333334467888899999999999999998865422 11111 1 12334433210
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-E------------EC--------CEeEEEEEccCCCCCHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHA-V------------LG--------GIYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~------------~~--------~~~~iRis~~~~~~t~edi~~li 294 (310)
..+++.+.|.++|+...... . .. ....||+++. +.+|++|+++++
T Consensus 300 -------------~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~-~~~t~~di~~v~ 365 (377)
T 3ju7_A 300 -------------RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW-EGMTKEIVEQIV 365 (377)
T ss_dssp -------------CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC-TTCCHHHHHHHH
T ss_pred -------------hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC-CCCCHHHHHHHH
Confidence 01467778877775321110 0 00 1468999954 789999999999
Q ss_pred HHHHHHHHH
Q 046506 295 TVVQEHLEA 303 (310)
Q Consensus 295 ~~l~~~~~~ 303 (310)
++|+++...
T Consensus 366 ~~l~~~~~~ 374 (377)
T 3ju7_A 366 ICLGQKVVS 374 (377)
T ss_dssp HHHTC----
T ss_pred HHHHHHHhc
Confidence 999887654
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=146.50 Aligned_cols=240 Identities=9% Similarity=-0.019 Sum_probs=149.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.+++ .+.+|+++|+++|++. +.+|++++++|++|.+.| +++|+++|++||+++++|
T Consensus 151 ~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 220 (404)
T 2o1b_A 151 LLADGK---PVPLNLEPP-HYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHD 220 (404)
T ss_dssp HHTTCE---EEEEECCTT-TCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEE
T ss_pred HHCCCE---EEEeccCcc-cCcCCHHHHHHhhccC------ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 345665 889998863 3568999999999753 457777788899999886 788999999999999999
Q ss_pred cccccccccChhhhhhhc--CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 81 AAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
++|+.+..... ...... +..+.++++.++||+++.| ..+|+++. ++..+.........+.
T Consensus 221 e~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~--------------- 283 (404)
T 2o1b_A 221 FAYGAFGFDAK-NPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTHTN--------------- 283 (404)
T ss_dssp CTTTTCBSSSC-CCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHHHHHC---------------
T ss_pred ccchhcccCCC-CCChhhcCCCCCCEEEEEecchhccCchhheEeEec-CHHHHHHHHHHHhhcc---------------
Confidence 99976543211 000000 0012467889999999744 34688765 4444332211100000
Q ss_pred ceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcchhhhhhhh
Q 046506 158 WQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~ 235 (310)
.+.. .....+.++++. +.+.+++..++..++.+++.+.|+++ ++++.. +..+ .+.+.+....
T Consensus 284 ----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~~~--------- 347 (404)
T 2o1b_A 284 ----AGMFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH-AKGGIYVWLETPPGY--------- 347 (404)
T ss_dssp ----CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-CCBSSEEEEECCTTC---------
T ss_pred ----CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecC-CCcceEEEEeCCCCC---------
Confidence 0000 112223333332 35567888888999999999999887 787764 4444 3555554210
Q ss_pred ccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+ ..++.+.+. +.|.....+..+. +.+++|+|+.. ++++++.+++.|+++++
T Consensus 348 ------~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 348 ------D-------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL---DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp ------C-------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS---CTTHHHHHHHHHHGGGG
T ss_pred ------C-------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 0 134566665 3564333322111 24689999662 67899999998887653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=138.20 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++. +.+|++++.+|++|.+.| +++|+++|++||+++++|++|++.............++ .
T Consensus 171 d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~ 243 (392)
T 3ruy_A 171 DLEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNV-T 243 (392)
T ss_dssp CHHHHHHHCCTT------EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred cHHHHHHHhccC------eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCC-C
Confidence 799999999733 568888889999999998 99999999999999999999964322211111011122 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++| |++++. ...|+++.++ ... +.+.. ..... ++ ..-...+.++.++++.+
T Consensus 244 ~d~~~~S--K~l~gG~~~~G~~~~~~-~~~-~~~~~---~~~~~-------------~~-~~~~~~~~a~~~~l~~~--- 299 (392)
T 3ruy_A 244 PDMYILG--KALGGGVFPISCAAANR-DIL-GVFEP---GSHGS-------------TF-GGNPLACAVSIAALEVL--- 299 (392)
T ss_dssp CSEEEEC--GGGGTTTSCCEEEEECH-HHH-TTCCT---TSSCC-------------SS-TTCHHHHHHHHHHHHHH---
T ss_pred CCEEEEc--hhhhCChhhhEEEEECH-HHH-hhhcc---CCcCC-------------CC-CCCHHHHHHHHHHHHHH---
Confidence 6887765 987652 3477777653 333 22110 00000 00 00011223333344332
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD--KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
..++..++..++++++.+.|+++ +.+... ++..+++.+.+.... .++.+.|.+
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~~~------------------------~~l~~~l~~ 354 (392)
T 3ruy_A 300 EEEKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNEPA------------------------RPYCEQLKA 354 (392)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESSCS------------------------HHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcchH------------------------HHHHHHHHH
Confidence 22677888899999999999886 334443 334566777665321 356777777
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.|. .+.+. +.+++|++++ ..++++|++.++++|++++
T Consensus 355 ~gi-~v~~~---~~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 355 AGL-LCKET---HENVIRIAPP-LVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TTE-ECCCB---TTTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred CCc-EEecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 764 44332 3578999965 6799999999999998864
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=143.12 Aligned_cols=216 Identities=13% Similarity=0.110 Sum_probs=137.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccCh--hhhhhhcCCCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHFIDGVEGA 103 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~--~~~~~~~~~~~~ 103 (310)
+|+++|+++|++. +.+|++++++|++|.+.|++ |+++|++||+++++|++|+.+..... .... ..+..+.
T Consensus 142 ~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~-~~~~~~~ 213 (370)
T 2z61_A 142 FTVESLEEALSDK------TKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIE-FDENLEK 213 (370)
T ss_dssp SSHHHHHHHCCSS------EEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGG-TCTTCSS
T ss_pred CCHHHHHHhcccC------ceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHH-ccCCCCc
Confidence 6789999998642 45777888899999999999 99999999999999999987654221 1111 1112357
Q ss_pred Ceeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHh---
Q 046506 104 DSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY--- 178 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 178 (310)
|+++.|+||+++.| | +|+++.++ ............+.. + ...+..+++...+
T Consensus 214 ~i~~~s~sK~~~~~-G~r~G~~~~~~-~~~~~~~~~~~~~~~-------------------~--~~~~~~~a~~~~l~~~ 270 (370)
T 2z61_A 214 TILINGFSKLYAMT-GWRIGYVISND-EIIEAILKLQQNLFI-------------------S--APTISQYAALKAFEKE 270 (370)
T ss_dssp EEEEEESTTTTTCG-GGCCEEEECCH-HHHHHHHHHHHHHTS-------------------S--SCHHHHHHHGGGGSHH
T ss_pred EEEEecChhccCCc-cceEEEEEECH-HHHHHHHHHHhhccc-------------------C--CCHHHHHHHHHHHhcc
Confidence 88999999998644 4 78877654 333222111000000 0 1122223333333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+.+.+++..++..++.+++.+.|.++ ++++..+.....+.+.+.. + ..++.+.|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~l~ 325 (370)
T 2z61_A 271 TEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE-D-----------------------GREFAYKLL 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS-C-----------------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC-C-----------------------HHHHHHHHH
Confidence 34567788888999999999999887 7776533223233333322 1 135666675
Q ss_pred -hcCcEEEEEe-EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 259 -ASGKAYMTHA-VLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 259 -~~g~~~~~~~-~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+.|. .+.+. ... +.+++|++++ +++++++.+++.|++++
T Consensus 326 ~~~gi-~v~~g~~f~~~~~~~~Ri~~~---~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 326 KEKFV-ALTPGIGFGSKGKNYIRISYA---NSYENIKEGLERIKEFL 368 (370)
T ss_dssp HHHCE-ECEEGGGGCGGGSSBEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred HhCCE-EEeCchhhCCCCCCEEEEEEe---CCHHHHHHHHHHHHHHH
Confidence 5664 44332 111 3568999955 58899999999998765
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=138.25 Aligned_cols=251 Identities=11% Similarity=0.096 Sum_probs=145.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|.. ++++|++++ ++.+|+++|+++|++. +.+|+++ +++|...|+++|+++|++||+++|+|++|
T Consensus 98 ~~~g~~---~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~ 164 (390)
T 3b8x_A 98 QQYGLR---VKFVDIDIN-TLNIDIESLKEAVTDS------TKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCE 164 (390)
T ss_dssp HHTTCE---EEEECBCTT-TCSBCHHHHHHHCCTT------EEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTT
T ss_pred HHcCCE---EEEEecCcc-ccCcCHHHHHHHhCcC------CeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcC
Confidence 345665 899999875 4689999999999753 3455554 35788899999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeee--cccccccccceEEEEEeCchhHHhhhccC-Cccccccccc-----cccccCC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLN--AHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATE-----SKQVVDY 155 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~-----~~~~~~~ 155 (310)
+.+..... . ..+. ..|..+++ .+|.++++.| |+++.+++.......... ..+....... ......+
T Consensus 165 ~~g~~~~~--~--~~g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 238 (390)
T 3b8x_A 165 SMGATFNN--K--CAGT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQF 238 (390)
T ss_dssp CTTCEETT--E--ETTS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTT
T ss_pred cccCEECC--c--cccc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 86655421 1 1111 13444433 3444555555 777776644322211100 0100000000 0000000
Q ss_pred -CCcee-ccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceE--EEEEEcCC-cc
Q 046506 156 -KDWQI-TLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAV--VCFRVSPS-AV 227 (310)
Q Consensus 156 -~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~--v~~~~~~~-~~ 227 (310)
..+.+ ..|.+ ...+..+.++.. .+.++++.++..++++++.+.|+++|++++..++ ..+. +.+.+.+. ..
T Consensus 239 ~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (390)
T 3b8x_A 239 EESFKFVLPGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGV 316 (390)
T ss_dssp TSSSCBCSCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCC
T ss_pred ccccceeccccccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcc
Confidence 00111 11222 233444444443 3677889999999999999999999999886542 3333 34444421 00
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEE---Ee---E---EC----------------CEeEEEEEccC
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMT---HA---V---LG----------------GIYAIRFAAGA 282 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~---~---~~----------------~~~~iRis~~~ 282 (310)
+ ..++.+.|.+.|..... +. . .. ....||+++.
T Consensus 317 --------------~-------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~- 374 (390)
T 3b8x_A 317 --------------I-------RKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNH- 374 (390)
T ss_dssp --------------C-------HHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECC-
T ss_pred --------------c-------HHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCC-
Confidence 0 13566666666643221 00 0 00 0147999955
Q ss_pred CCCCHHHHHHHHHHH
Q 046506 283 TLTEERHVMVAWTVV 297 (310)
Q Consensus 283 ~~~t~edi~~li~~l 297 (310)
+.+|++||++++++|
T Consensus 375 ~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 375 QIELFDEIDYLREVL 389 (390)
T ss_dssp SSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhh
Confidence 789999999999886
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-15 Score=137.54 Aligned_cols=215 Identities=11% Similarity=0.052 Sum_probs=136.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++|+++|++. +.+|+++..++++|.+.| +++|+++|++||+++++|++|++.............++
T Consensus 173 ~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~- 245 (395)
T 1vef_A 173 NDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI- 245 (395)
T ss_dssp TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-
T ss_pred CcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC-
Confidence 5899999998743 457777777778998877 99999999999999999999984221111100001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.+|++ +.||+++++.++|+++++++ .+ +.+... .+.. ++. .-......+.++++.+..
T Consensus 246 ~~d~~--s~sK~~~~g~~~G~~~~~~~-~~-~~l~~~-~~~~---------------~~~-~~~~~~~a~~~al~~~~~- 303 (395)
T 1vef_A 246 VPDIL--TLAKALGGGVPLGVAVMREE-VA-RSMPKG-GHGT---------------TFG-GNPLAMAAGVAAIRYLER- 303 (395)
T ss_dssp CCSEE--EECGGGGTTSSCEEEEEEHH-HH-HTSCTT-SSCC---------------SST-TCHHHHHHHHHHHHHHHH-
T ss_pred CCCEE--EEcccccCCCceEEEEehHH-HH-hhhccC-CcCC---------------CcC-CCHHHHHHHHHHHHHHHh-
Confidence 36876 55999998888999988755 33 322110 0000 000 001122333344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKR--FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN- 258 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~--~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 258 (310)
+++.++..++++++.+.|++++. +... ++..+++.+.+.... .++.+.|.
T Consensus 304 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~~~~~~------------------------~~l~~~l~~ 356 (395)
T 1vef_A 304 --TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLMVGLELKEKA------------------------APYIARLEK 356 (395)
T ss_dssp --HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTEEEEEESSCS------------------------HHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEEEEEEEcChH------------------------HHHHHHHHH
Confidence 45677888899999999987632 2111 234456777665321 35667776
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+.|. .+.+. +.+++|++++ +.++++++++++++|++++
T Consensus 357 ~~gi-~v~~~---~~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 357 EHRV-LALQA---GPTVIRFLPP-LVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHCE-ECEES---STTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred HCCe-EEecC---CCCEEEEeCC-CCCCHHHHHHHHHHHHHHh
Confidence 6664 44432 4578999955 6799999999999998764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=137.92 Aligned_cols=211 Identities=11% Similarity=0.082 Sum_probs=134.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++|+++|++. +.+|++++.+|++|.+.| +++|+++|++||+++++|++|+..............+.
T Consensus 160 ~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~- 232 (375)
T 2eh6_A 160 NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNL- 232 (375)
T ss_dssp TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCC-
Confidence 5889999988643 557888888899999988 99999999999999999999984321111010001111
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.+|++++| |+++++.++|+++++++ .. +.+... .+.. ..+. ..+...++...+.
T Consensus 233 ~~d~~s~S--K~~~~g~~~G~~~~~~~-~~-~~~~~~-~~~~-----------------~~~~--~~~~~~~~~~~l~-- 286 (375)
T 2eh6_A 233 KPDVIALA--KGLGGGVPIGAILAREE-VA-QSFTPG-SHGS-----------------TFGG--NPLACRAGTVVVD-- 286 (375)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEEEHH-HH-TTCCTT-SCCC-----------------SSTT--CHHHHHHHHHHHH--
T ss_pred CCCEEEEc--ccccCCCCeEEEEEcHH-HH-hhhcCC-CCCC-----------------CCCC--CHHHHHHHHHHHH--
Confidence 37888766 99988888999988753 33 222110 0000 0011 1222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
..++..++..++++++.+.|++++...+ ++..+++.+.+.... .++.+.|.++|
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~~~------------------------~~~~~~l~~~g 340 (375)
T 2eh6_A 287 EVEKLLPHVREVGNYFKEKLKELGKGKV--KGRGLMLGLELEREC------------------------KDYVLKALEKG 340 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSEE--EEETTEEEEECSSCC------------------------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEEEEEEcCcH------------------------HHHHHHHHHCC
Confidence 1126778888899999999988754222 234556666654321 35666676766
Q ss_pred cEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 262 KAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 262 ~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
. .+.+. +.+.+|++++ +.++++|+++++++|+++
T Consensus 341 i-~~~~~---~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 341 L-LINCT---AGKVLRFLPP-LIIQKEHIDRAISVLREI 374 (375)
T ss_dssp E-ECEEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred C-EEecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 4 43332 3568999965 579999999999999875
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-16 Score=142.77 Aligned_cols=246 Identities=14% Similarity=0.116 Sum_probs=141.6
Q ss_pred EEEEecCC-CC--CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccc
Q 046506 13 FRAIKTTK-SS--SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGS 86 (310)
Q Consensus 13 v~~v~~~~-~~--~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~ 86 (310)
++.+++++ ++ .+.+|+++|++++...+. .+.+|++++++|++|.+.| +++|+++|++||+++|+|++|+.+
T Consensus 175 ~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~ 251 (444)
T 3if2_A 175 IDEVTHDGEEGFFKYRVDFEALENLPALKEG---RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP 251 (444)
T ss_dssp EEEEEETTEEEEEEEECCHHHHHTCHHHHTT---CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT
T ss_pred EEecccccccCccccCCCHHHHHHHHHhcCC---CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc
Confidence 67777764 11 247999999999643211 2557888888999999999 889999999999999999999743
Q ss_pred cccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc
Q 046506 87 ACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF 166 (310)
Q Consensus 87 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (310)
..... +........+.++++.|+||++....++|+++. ++............+... +...
T Consensus 252 ~~~~~-~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~------------------~~~~ 311 (444)
T 3if2_A 252 FPNII-YSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLA------------------PTRF 311 (444)
T ss_dssp TTCCB-CSCCCCCCCTTEEEEEESTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHHSS------------------CCCH
T ss_pred ccccc-cccccccCCCCEEEEechhhccCCCCceEEEEE-CHHHHHHHHHHHHhccCC------------------CChH
Confidence 21111 111111122467889999998554466776654 443332221100000000 0011
Q ss_pred chHHHHHHHHHhCH-HHHHH-HHHHHHHHHHHHHHHHcC-CC--CeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 167 RSLKLWFVLRNYGV-ANLRH-FLRSHVNMAKLFERLVGS-DK--RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 167 ~~~~~~~~l~~~~~-~~~~~-~~~~~~~~a~~l~~~L~~-~~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
....+...++.... ....+ +.++..++.+.+.+.|.+ ++ ++.+..+.....+.+.+.....
T Consensus 312 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-------------- 377 (444)
T 3if2_A 312 GAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI-------------- 377 (444)
T ss_dssp HHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS--------------
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC--------------
Confidence 11222222221111 11122 344455556666666644 34 4666544455566666654110
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEE---C--------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVL---G--------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~--------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.|.+.|. .+.+... . ..+.+|+|++ . ++++|+.+++.|++++.++.+
T Consensus 378 ~-------~~~l~~~l~~~gi-~v~~g~~~~~~~~~~~~~~~~~~iRis~~-~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 378 S-------TLDLYERLKAKGT-LIVPSEYFFPGVDVSDYQHAHECIRMSIA-A--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp C-------HHHHHHHHHHTTE-ECEEGGGSCTTCCCTTCSGGGSEEEEESS-S--CHHHHHHHHHHHHHHHHHHHT
T ss_pred C-------HHHHHHHHHHCCe-EEecchhhcCCCCCcccccCCCeEEEEEe-C--CHHHHHHHHHHHHHHHHHHHc
Confidence 0 1356677777774 4443211 1 1268999966 2 899999999999999987754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=138.13 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=109.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. ++++|. .|+++|+++|+++ +.+|++++++|++|.+.|+++|+++|++||+++++|++|
T Consensus 120 ~~~g~~---~~~v~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~ 183 (389)
T 3acz_A 120 PRFGIE---VDLIDT-------SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATF 183 (389)
T ss_dssp HHTTCE---EEEECT-------TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHcCCE---EEEECC-------CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 345665 666665 3789999998754 458888999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+.+....+. . .++|+++.|+||++++|.+ +|+++.++++.+....... .+..
T Consensus 184 ~~~~~~~~~-----~--~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~-~~~g------------------ 237 (389)
T 3acz_A 184 TSPCFLKPL-----E--LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYR-KDAG------------------ 237 (389)
T ss_dssp TCTTTCCGG-----G--TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHH-HHHC------------------
T ss_pred ccccccCcc-----c--cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHH-HhcC------------------
Confidence 766532211 1 2589999999999999987 6888777623433221100 0000
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE 208 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~ 208 (310)
+ .......|.+++.+ +.+..++++..++++.+.+.|++.+.+.
T Consensus 238 -~-~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~ 280 (389)
T 3acz_A 238 -S-LMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIV 280 (389)
T ss_dssp -C-CCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred -C-CCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 0 01223344444433 3455667777888888888888776554
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=143.95 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=138.0
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-cccC---ChHHHHHHHHHhCcEEEeeccccc-ccc---------c
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAVD---TLKPLCDVAKQFGIWVHVDAAYAG-SAC---------I 89 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~~---pl~~I~~l~~~~g~~l~vD~a~~~-~~~---------~ 89 (310)
+.+|+++|+++|++... ..+.+|+++..+|++ |.+. ++++|+++|++||+++|+|++|+. +.+ .
T Consensus 165 ~~~d~~~Le~~i~~~~~--~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~ 242 (467)
T 2oqx_A 165 GNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK 242 (467)
T ss_dssp TCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGT
T ss_pred CCcCHHHHHHHHHhcCC--CceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhccccccccc
Confidence 57999999999986310 014467777777776 7654 488999999999999999998866 322 0
Q ss_pred Chhhhhhh-cCCCCCCeeeeecccccccccceEEEEEeCc---hhHHhhhccCCccc-cccccccccccCCCCceeccCC
Q 046506 90 CPEFRHFI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDP---SDLVNSLSTNPEYL-KNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 90 ~~~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~---~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
........ .....+|++++++||+++.|.| |+++.+++ +.+.+.. .+. ...+. .+.+.
T Consensus 243 g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~ 305 (467)
T 2oqx_A 243 DWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECR----TLCVVQEGF------------PTYGG 305 (467)
T ss_dssp TSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHH----HHHHHTTSS------------CCCCC
T ss_pred CccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHH----HhhhccCCc------------ccccc
Confidence 10011100 0012478899999999988855 55555544 2222211 111 00000 00111
Q ss_pred CcchHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcC--Ccchhhhhhhhccccch
Q 046506 165 RFRSLKLWFVLRNYGVANL-RHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSP--SAVMDKLKTKYENSLLS 241 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~ 241 (310)
. .+.+ .+++...-.+.+ ++.+++..++++++.+.|.++ ++++. +....++.+.+.. ...
T Consensus 306 ~-~~~~-~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~-------------- 367 (467)
T 2oqx_A 306 L-EGGA-MERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHI-------------- 367 (467)
T ss_dssp C-CHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTS--------------
T ss_pred h-hhhH-HHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccC--------------
Confidence 1 1111 112211101112 234556677888999999887 77776 5555666666531 100
Q ss_pred hHHHHHHH-HHHHHHHH-HhcCcEEEEEeEE-------------CCEeEEEEEccCCC-CCHHHHHHHHHHHHHHHHHHh
Q 046506 242 EEERINEF-NRELLESI-NASGKAYMTHAVL-------------GGIYAIRFAAGATL-TEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 242 ~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~~-------------~~~~~iRis~~~~~-~t~edi~~li~~l~~~~~~~~ 305 (310)
+. ..+ ...+.+.| .+.|......... .+.+.+|++++ .. ++++||+.++++|++++..+.
T Consensus 368 ~~---~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 368 PA---DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP-RATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp CG---GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC-TTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred Cc---ccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec-CCCCCHHHHHHHHHHHHHHHhhhh
Confidence 00 111 24566777 6677443321210 01378999966 56 899999999999999887643
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-14 Score=132.33 Aligned_cols=248 Identities=9% Similarity=0.030 Sum_probs=141.2
Q ss_pred EEEEecCC---CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeeccccc
Q 046506 13 FRAIKTTK---SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 13 v~~v~~~~---~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
++.+|.+. ++.+.+|+++|+++|++.. .+..+.+|+++...+++|.+.| +++|+++|++||+++++|++|++
T Consensus 166 v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~ 244 (426)
T 1sff_A 166 VYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244 (426)
T ss_dssp EEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred cEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhc
Confidence 77788753 1124589999999997410 0002446666554444997777 99999999999999999999984
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
.........-...++ .+|++ +.+|+++....+|+++++++ .+ +.+... .+.. ++ ..-.
T Consensus 245 ~~~~g~~~~~~~~~~-~~di~--s~sK~~~~GlriG~~~~~~~-~~-~~l~~~-~~~~---------------~~-~~~~ 302 (426)
T 1sff_A 245 AGRTGTLFAMEQMGV-APDLT--TFAKSIAGGFPLAGVTGRAE-VM-DAVAPG-GLGG---------------TY-AGNP 302 (426)
T ss_dssp TTTTSSSSGGGGTTS-CCSEE--EECGGGGTSSCCEEEEEEHH-HH-TTSCTT-SBCC---------------SS-SSCH
T ss_pred cCcccchhhhhhcCC-CCCEE--EEcccccCCCceEEEEEcHH-HH-hhhccC-CcCc---------------CC-CCCH
Confidence 322111110001111 36765 56799885233688887653 33 222100 0000 00 0001
Q ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 166 FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
....++.++++.+.. ++..++..++.+++++.|.+ ++.+... ++..+++.+.+.+... ...+
T Consensus 303 ~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~---------~~~~- 368 (426)
T 1sff_A 303 IACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGD---------HNKP- 368 (426)
T ss_dssp HHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGC---------TTSB-
T ss_pred HHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCcc---------ccCC-
Confidence 222334445554422 24556667777777777764 4444333 2346677777753100 0000
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
. .....++.+.|.++|. .+.+... ..+++|++++ +.++++++++++++|++++..+
T Consensus 369 ~----~~~~~~l~~~l~~~gi-~v~~~~~-~~~~iRi~~~-~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 369 D----AKLTAEIVARARDKGL-ILLSCGP-YYNVLRILVP-LTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp C----HHHHHHHHHHHHHTTE-ECEEEST-TSCEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred C----hHHHHHHHHHHHHCCc-EEecCCC-CCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 0 1122467777777774 4443321 2568999965 5789999999999999988765
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-16 Score=140.45 Aligned_cols=238 Identities=11% Similarity=0.010 Sum_probs=147.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHH---HHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKP---LCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~---I~~l~~~~g~~l~v 79 (310)
+...|.. ++.+|.+++ .+.+|+++|++++++. +.++++++++|++|.+.|.++ |+++|++||+++++
T Consensus 137 ~~~~g~~---~~~v~~~~~-g~~~d~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 137 TLLGGGE---IHFANCPAP-SFNPDWRSISEEVWKR------TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp HHHTTCE---EEEEECCTT-TCCCCGGGSCHHHHHT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHcCCE---EEEeecCCC-CCccCHHHHHHhhccC------cEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456776 899999654 4678999999999874 457777888999999987665 99999999999999
Q ss_pred ecccccccccChhhhhhh------cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccc
Q 046506 80 DAAYAGSACICPEFRHFI------DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~------~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
|++|+.+........... ......+++..|++|.++.| ..+|+++. ++.......... .+..
T Consensus 207 De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~-~~~~--------- 275 (396)
T 3jtx_A 207 DECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAG-DAELLKNFLLYR-TYHG--------- 275 (396)
T ss_dssp ECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEE-CHHHHHHHHHHH-HHHT---------
T ss_pred EccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEe-CHHHHHHHHHHH-hhcc---------
Confidence 999976543221000000 00124678889999976544 45677654 454432221100 0000
Q ss_pred cCCCCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhh
Q 046506 153 VDYKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKL 231 (310)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~ 231 (310)
.+.+ .....+.++++ ..+.+++..++..++.+++.+.|.+. +.+..+....++.+.+...+
T Consensus 276 ---------~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~----- 337 (396)
T 3jtx_A 276 ---------SAMSIPVQRASIAAWD--DEQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVPDGD----- 337 (396)
T ss_dssp ---------CCCCHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECTTSC-----
T ss_pred ---------cCCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECCCCC-----
Confidence 0000 11222233333 24567888888999999999999875 33333333445555554311
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEE---------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 232 KTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVL---------GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~---------~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+ .|. .+.+... .+.+++|+|++. ++++++.+++.|++++
T Consensus 338 ------------------~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 338 ------------------DLAFARNLWQKAAI-QVLPGRFLARDTEQGNPGEGYVRIALVA---DVATCVKAAEDIVSLY 395 (396)
T ss_dssp ------------------HHHHHHHHHHHHCE-ECEEGGGGCCCCTTCCTTTTEEEEECCS---CHHHHHHHHHHHHHHC
T ss_pred ------------------HHHHHHHHHHHCCE-EEeCChHhCCcccccCCCCCeEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 1345566644 464 4443211 235799999652 8999999999998753
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-16 Score=139.65 Aligned_cols=228 Identities=13% Similarity=0.103 Sum_probs=145.9
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|.+++ +.+ +++++.+ .+.++++++++|++|.+.|+++|.++|+++|+++++|++|
T Consensus 124 ~~~g~~---~~~v~~~~~--~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~ 188 (360)
T 3hdo_A 124 EVQGAR---VRTFGLTGD--FRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETY 188 (360)
T ss_dssp HHHTCE---EEEECBCTT--SSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTT
T ss_pred HHCCCE---EEEeeCCCC--CCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECCh
Confidence 445666 888998753 344 4443332 1337888889999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
+.+.... ....... ...++++.|++|+++.| .++|+++. ++............| .
T Consensus 189 ~~~~~~~--~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~----~---------------- 244 (360)
T 3hdo_A 189 AEFAESN--ALELVRR-HENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHY----N---------------- 244 (360)
T ss_dssp GGGSSCC--CTHHHHH-CSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSC----C----------------
T ss_pred HhhCCcc--hhHHhcc-CCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCC----C----------------
Confidence 7532111 0011111 13457788999998744 45677765 444433221111110 0
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchh
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSE 242 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
.-......+.++++ ..+.++++.++..++.+++.+.|.++ ++.+. ++..+.+.+.+.+.+
T Consensus 245 ~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~---------------- 304 (360)
T 3hdo_A 245 LDRLAQAACVAALR--DQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDRD---------------- 304 (360)
T ss_dssp SCHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTCC----------------
T ss_pred CCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCCC----------------
Confidence 00012223333343 24567888999999999999999987 88875 556666666554321
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 243 EERINEFNRELLESINASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 243 ~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
..++.+.|.+.|. .+.+.. ....+++|+|+. +++|+++++++|+++.+
T Consensus 305 -------~~~l~~~l~~~gi-~v~~~~~~~~~~~iRis~~----~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 305 -------GKRVYDGLYARKV-LVRHFSDPLLAHGMRISIG----TREEMEQTLAALKEIGE 353 (360)
T ss_dssp -------HHHHHHHHHHTTE-ECBCCCSTTTTTSEEEECC----CHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHCCE-EEEECCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHhc
Confidence 1356677777774 443321 223578999944 78999999999998764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=143.20 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=144.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|.. +++++++++ .+.+|+++|+++|++. +.+|+ .++++|...|+++|.++|++||+++++|++
T Consensus 92 ~~~~G~~---~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a 158 (367)
T 3nyt_A 92 VALLGAK---PVYVDIDPR-TYNLDPQLLEAAITPR------TKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAA 158 (367)
T ss_dssp HHHTTCE---EEEECBCTT-TCSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECT
T ss_pred HHHcCCE---EEEEecCCc-cCCcCHHHHHHhcCcC------CcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECc
Confidence 3456776 899999875 4689999999999653 33444 556889999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeee--cccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLN--AHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
|+.+...... ..+. ..|++++| +||+++++...|+++.+++.......... . .... ..+.....
T Consensus 159 ~~~g~~~~~~----~~~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~-~---~g~~-----~~~~~~~~ 224 (367)
T 3nyt_A 159 QSFGASYKGK----RSCN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIA-R---HGQD-----RRYHHIRV 224 (367)
T ss_dssp TTTTCEETTE----ETTS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHT-B---TTEE-----ETTEECSC
T ss_pred cccCCeECCe----eccC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHH-h---cCCC-----cCceeecc
Confidence 9765542211 1111 12888888 59999864445666665554432221111 0 0000 00000000
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----ceEEEEEEcCCcchhhhhhhh
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----FAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~~~~~~~~~~~~~~~~~ 235 (310)
..+.+...+..+.++.. .+.+++..++..++++++.+.|.++ ++.+...+. ..++.+....
T Consensus 225 g~~~~~~~~~aa~~~~~--l~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------- 290 (367)
T 3nyt_A 225 GVNSRLDTLQAAILLPK--LEIFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMDN----------- 290 (367)
T ss_dssp CCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECSS-----------
T ss_pred CcCCCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeCC-----------
Confidence 01112233333333332 3456778888889999999999987 455432221 1223333221
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE--------EC------------CEeEEEEEccCCCCCHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAV--------LG------------GIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~------------~~~~iRis~~~~~~t~edi~~li~ 295 (310)
...+.+.|.++|........ +. ....+|+++. +.+|++||+++++
T Consensus 291 --------------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~-~~~t~~~i~~v~~ 355 (367)
T 3nyt_A 291 --------------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMH-PYLDTASIKIICA 355 (367)
T ss_dssp --------------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCC-TTCCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCC-CCCCHHHHHHHHH
Confidence 13566677777753221110 00 1468999944 7899999999999
Q ss_pred HHHHH
Q 046506 296 VVQEH 300 (310)
Q Consensus 296 ~l~~~ 300 (310)
+|++.
T Consensus 356 ~~~~~ 360 (367)
T 3nyt_A 356 ALTNL 360 (367)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 99754
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=147.50 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=83.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|+. ++++|.+ |+++|+++|++. +.+|++.+++|++|.+.|+++|+++|++||+++++|++
T Consensus 192 ~~~~G~~---v~~v~~~-------d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea 255 (464)
T 1ibj_A 192 VPRSGVV---VKRVNTT-------KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNS 255 (464)
T ss_dssp SGGGTCE---EEEECTT-------SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECT
T ss_pred HHHcCCE---EEEeCCC-------CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECC
Confidence 3455665 7777663 789999998643 55888999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccce--EEEEEeCchh
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC--CCLWVKDPSD 130 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--g~l~v~~~~~ 130 (310)
|+.+....+. . .++|+++.++||++++|.|+ |+++++++..
T Consensus 256 ~~~g~~~~~~-----~--~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l 298 (464)
T 1ibj_A 256 IMSPVLSRPL-----E--LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL 298 (464)
T ss_dssp TTCTTTCCGG-----G--TTCSEEEEETTTTTTCSSCCCCEEEEECSHHH
T ss_pred CcccccCChh-----h--cCCEEEEECCcccccCCCCCcEEEEEEChHHH
Confidence 9765432121 1 15899999999999998876 8888876544
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=138.30 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=121.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
...|+. +++++.+ |+++|+++|++. +.+|++.+++|++|.+.|+++|+++|+++|+++++|+++
T Consensus 143 ~~~G~~---~~~v~~~-------d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~ 206 (430)
T 3ri6_A 143 PSFGIE---VRFVDVM-------DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTM 206 (430)
T ss_dssp HHTTCE---EEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTT
T ss_pred HHcCCE---EEEeCCC-------CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 345665 7777764 789999999764 458889999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeeccccccccc-ceEEEEE-eCchhHHh---------hhccCCccccccccccccc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL-DCCCLWV-KDPSDLVN---------SLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~v-~~~~~~~~---------~~~~~~~y~~~~~~~~~~~ 152 (310)
+.+....+. . .++|+++.|++|++++|. +.|.+++ +.+..+.. .+. ...|+....
T Consensus 207 ~~~~~~~~~----~---~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g-~~~~i~~~~------ 272 (430)
T 3ri6_A 207 TPPYLLEAK----R---LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG-PMAFLYKAR------ 272 (430)
T ss_dssp SCTTTCCGG----G---GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHG-GGHHHHHHH------
T ss_pred cccccCChH----H---cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhc-hhhHHHHHH------
Confidence 866553221 1 158999999999998762 2344444 33311100 000 000000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC----------------ce
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH----------------FA 216 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~----------------~~ 216 (310)
.......+.......+|..++ +.+.+..++++..++++++.+.|++.|+++.+..|. .+
T Consensus 273 ---~~~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg 347 (430)
T 3ri6_A 273 ---KEVFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAG 347 (430)
T ss_dssp ---HTHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred ---HHHHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCc
Confidence 000001111223344444443 557788889999999999999999999987544332 44
Q ss_pred -EEEEEEcC
Q 046506 217 -VVCFRVSP 224 (310)
Q Consensus 217 -~v~~~~~~ 224 (310)
+++|.+.+
T Consensus 348 ~~lsf~l~~ 356 (430)
T 3ri6_A 348 SILTFELES 356 (430)
T ss_dssp SEEEEECSS
T ss_pred eEEEEEECC
Confidence 88888873
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-15 Score=139.81 Aligned_cols=264 Identities=12% Similarity=0.065 Sum_probs=155.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.++++++++|.+|+++|+++|++... ...+.+|+++.++|++|.+.+ +++|+++|++||+++++
T Consensus 198 ~~~~g~~---~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~ 273 (498)
T 3ihj_A 198 ISELDAI---QVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLA 273 (498)
T ss_dssp HHHTTCE---EEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCE---EEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEE
Confidence 3455665 8999998866689999999999987532 112567777888999999866 67799999999999999
Q ss_pred ecccccccccCh----hhhhhhcCC-----CCCC-eeeeecccccc--cccceEEEEE--eCchhHHhhhccCCcccccc
Q 046506 80 DAAYAGSACICP----EFRHFIDGV-----EGAD-SFSLNAHKWFF--TTLDCCCLWV--KDPSDLVNSLSTNPEYLKNK 145 (310)
Q Consensus 80 D~a~~~~~~~~~----~~~~~~~~~-----~~~D-~~~~~~hK~l~--~p~g~g~l~v--~~~~~~~~~~~~~~~y~~~~ 145 (310)
|.+|+.+.+... ........+ .... ++..|++|.+. .....|++.+ .++............+..
T Consensus 274 De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~-- 351 (498)
T 3ihj_A 274 DEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLC-- 351 (498)
T ss_dssp ECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCC--
T ss_pred EcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCC--
Confidence 999976554321 111111000 0122 34569999984 2345666654 455443222111000000
Q ss_pred ccccccccCCCCceeccCCCcchHHHHHHHHHhC------------HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC
Q 046506 146 ATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG------------VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR 213 (310)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~ 213 (310)
......++....+. .....++.++..++++++.+.|.++|++++. ++
T Consensus 352 --------------------~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~p 410 (498)
T 3ihj_A 352 --------------------PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN-PL 410 (498)
T ss_dssp --------------------CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CC
T ss_pred --------------------CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec-CC
Confidence 01111122222221 1234566788889999999999998998876 45
Q ss_pred CceEEEE-EEcCCcchhhhhhhhccccchhHHHHHHHHHH--HHHHHHhcCcEEEEEeE---ECCEeEEEEEccCCCCCH
Q 046506 214 HFAVVCF-RVSPSAVMDKLKTKYENSLLSEEERINEFNRE--LLESINASGKAYMTHAV---LGGIYAIRFAAGATLTEE 287 (310)
Q Consensus 214 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~l~~~g~~~~~~~~---~~~~~~iRis~~~~~~t~ 287 (310)
..+++.| .+..+.- ...+... ......+ +.+.+.+.|.....+.. ..+...+|+++. .++
T Consensus 411 ~gg~~~~~~l~~p~~--~~~~~~~---------~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~---~~~ 476 (498)
T 3ihj_A 411 QGAMYAFPRIFIPAK--AVEAAQA---------HQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL---PPV 476 (498)
T ss_dssp CBSSEECCEECCCHH--HHHHHHH---------TTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC---SCH
T ss_pred CeEEEEEEeccCchh--hhHHHHh---------cCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC---CCH
Confidence 5555544 3432100 0000000 0000012 23445556755444322 134678999963 689
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 046506 288 RHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 288 edi~~li~~l~~~~~~~~~~ 307 (310)
++++.+++.|+++++++.++
T Consensus 477 e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 477 EKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-15 Score=135.44 Aligned_cols=240 Identities=8% Similarity=-0.053 Sum_probs=142.9
Q ss_pred EEEEecCC----CCCcccCHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccCC----hHHHHHHHHHhCcEEEeeccc
Q 046506 13 FRAIKTTK----SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVDT----LKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 13 v~~v~~~~----~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..++.+. +..+.+|+++|+++|++... .+.+|+++.. ++++|.+.| +++|+++|++||+++|+|++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~ 248 (429)
T 1s0a_A 172 NLFAPAPQSRMDGEWDERDMVGFARLMAAHRH---EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA 248 (429)
T ss_dssp CEEECCCCSBC-CCCCGGGGHHHHHHHHHHTT---TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTT
T ss_pred ceEeCCCcccccccchHHHHHHHHHHHHhCCC---CEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh
Confidence 56676642 11125899999999975311 2446666666 688998777 999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCceec
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+..........-...++ ..|++++ .|+++++ .++|++++++ +.+....... ..+.... ++.
T Consensus 249 ~~~g~~g~~~~~~~~~~-~~d~~t~--sK~l~~G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~~-------------t~~ 311 (429)
T 1s0a_A 249 TGFGRTGKLFACEHAEI-APDILCL--GKALTGGTMTLSATLTTR-EVAETISNGEAGCFMHGP-------------TFM 311 (429)
T ss_dssp TTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTSSSCCEEEEECH-HHHHHHHTSTTSSCSCCC-------------TTT
T ss_pred hCCcccchHHHhhhcCC-CCCEEEe--cccccCCCccceEEEeCH-HHHHHhhcCCCcccccCC-------------CCC
Confidence 74322111100001122 3677765 4998876 7889988754 3433221110 0000000 000
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
.-.....++.++++.+.. ++..++..++.+++.+.|+++ |++..+ ++..+++.+.+....
T Consensus 312 -~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~~------------ 374 (429)
T 1s0a_A 312 -GNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPV------------ 374 (429)
T ss_dssp -TCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCB------------
T ss_pred -CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCcc------------
Confidence 001122333344443322 245677778888999998775 566533 223456666665310
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.+.|.++|. .+.+. .+.+|+|++ ..++++|+++++++|++++.+++
T Consensus 375 ---~-------~~~l~~~l~~~Gi-~v~~~----~~~iRis~~-~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 375 ---N-------MAALQKFFVEQGV-WIRPF----GKLIYLMPP-YIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp ---C-------HHHHHHHHHHTTE-ECCCB----TTEEEECCC-TTCCHHHHHHHHHHHHHHTSSGG
T ss_pred ---c-------HHHHHHHHHHCCC-EEecc----CCEEEEECC-CCCCHHHHHHHHHHHHHHHHhhh
Confidence 0 1356667777764 44332 268999955 67999999999999998875543
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-15 Score=136.71 Aligned_cols=252 Identities=14% Similarity=0.119 Sum_probs=149.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHH------cCCCcEEEEE-eccCCcccccCChH---HHHHHHHH
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVE------AGLIPLFLCA-TIGTTAITAVDTLK---PLCDVAKQ 72 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~------~~~~~~~v~~-~~~~~~~G~~~pl~---~I~~l~~~ 72 (310)
++..|.. ++.+|.+++ .+|+++|++++++... ....+.+|++ .+.+|++|.+.|.+ +|+++|++
T Consensus 149 ~~~~g~~---~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~ 222 (425)
T 2r2n_A 149 LHPLGCN---IINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK 222 (425)
T ss_dssp HGGGTCE---EEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCE---EEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH
Confidence 3456666 889998753 4999999999963110 0012345544 67889999998866 99999999
Q ss_pred hCcEEEeecccccccccChhhhhhh-cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccc
Q 046506 73 FGIWVHVDAAYAGSACICPEFRHFI-DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 73 ~g~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
||+++++|++|+...+......... ....+.+++..|++|+++ | .-+|+++.+++ .+.........+...
T Consensus 223 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~~~~~------ 294 (425)
T 2r2n_A 223 YDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKP-LIERVILHIQVSTLH------ 294 (425)
T ss_dssp TTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHTTTCS------
T ss_pred cCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHH-HHHHHHHHHHHhcCC------
Confidence 9999999999975433221100000 011124577899999997 4 23688877644 332221100000000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHcC-CCCeE-EecCCCceEEEEEEcC
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYGV----ANLRHFLRSHVNMAKLFERLVGS-DKRFE-VVFPRHFAVVCFRVSP 224 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~a~~l~~~L~~-~~~~~-v~~~~~~~~v~~~~~~ 224 (310)
.-.+...++..+++..+. +.++++.++..++.+++.+.|.+ +|++. +..+.....+.+.+..
T Consensus 295 ------------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~ 362 (425)
T 2r2n_A 295 ------------PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG 362 (425)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETT
T ss_pred ------------CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCC
Confidence 000122233334443221 34566667778888889999987 67874 4434445566666654
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-----CEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG-----GIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.. .. . +.+.+.+.+.|.....+.... +.+++|+|++ . .++++++.+++.|++
T Consensus 363 ~~--------------~~----~---~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~-~-~~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 363 IN--------------DV----K---ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS-S-ASPEQMDVAFQVLAQ 419 (425)
T ss_dssp CS--------------CC----H---HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS-S-CCHHHHHHHHHHHHH
T ss_pred CC--------------CH----H---HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC-C-CCHHHHHHHHHHHHH
Confidence 21 00 1 124556666665443322221 2478999966 2 689999999999998
Q ss_pred HHHH
Q 046506 300 HLEA 303 (310)
Q Consensus 300 ~~~~ 303 (310)
++++
T Consensus 420 ~l~~ 423 (425)
T 2r2n_A 420 LIKE 423 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=138.98 Aligned_cols=234 Identities=13% Similarity=0.007 Sum_probs=144.7
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++++ .+++ +|++++.+. +.++++++++|++|.+.| +++|+++|++||+++++|
T Consensus 126 ~~~g~~---~~~~~~~~~~--~~~~-~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 193 (376)
T 3ezs_A 126 KFIKAK---SLLMPLTKEN--DFTP-SLNEKELQE------VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILIND 193 (376)
T ss_dssp HHTTCE---EEEEECCGGG--TSCC-CCCHHHHHH------CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCE---EEEcccCCCC--Ccch-hHHhhhccC------CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEE
Confidence 445666 8899988653 4555 788888764 347777888999999987 667888899999999999
Q ss_pred cccccccccChhhh--hhhc----CCCCCCeeeeecccccc-cccceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 81 AAYAGSACICPEFR--HFID----GVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 81 ~a~~~~~~~~~~~~--~~~~----~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
++|+.+........ .... .....+++..|+||+++ ....+|+++. ++.......... .+...
T Consensus 194 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~-~~~~~--------- 262 (376)
T 3ezs_A 194 ECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAFR-AYLGY--------- 262 (376)
T ss_dssp CTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHH-TTTCC---------
T ss_pred ccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee-CHHHHHHHHHHH-hhhcC---------
Confidence 99986544221100 0000 01246788999999996 3455777765 444432221100 00000
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhh
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~ 233 (310)
. .-......+.++++. .+.+++..++..++.+++.+.|+ ++. .+....++.+.+..
T Consensus 263 -------~-~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~~--------- 318 (376)
T 3ezs_A 263 -------T-SANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQN--------- 318 (376)
T ss_dssp -------C-CCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECSC---------
T ss_pred -------C-CChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECCC---------
Confidence 0 000112222333332 34578888888899999999987 443 23344555555541
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 234 KYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.+ .|.....+... .+.+++|+|++ .++++++.++++|++++++
T Consensus 319 ----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 319 ----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV---YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp ----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC---SCHHHHHHHHHHHHHHHCC
T ss_pred ----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc---CCHHHHHHHHHHHHHHHHh
Confidence 1356677766 67544432221 24579999965 3899999999999987643
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=133.84 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=119.5
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. +++++.+ |+++|+++|++. +.+|++..++|++|.+.|+++|+++|++||+++++|++|+.
T Consensus 130 ~g~~---~~~v~~~-------d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 130 AGLD---FSFVDLT-------DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp HCCE---EEEECTT-------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTH
T ss_pred cCeE---EEEECCC-------CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 3555 6666653 689999999754 45888899999999999999999999999999999999976
Q ss_pred ccccChhhhhhhcCCCCCCeeeeeccccccccc-ce-E-EEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTL-DC-C-CLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~-g-~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
+....+.. .++|+++.|+||++++|. .. | +++++++.......... .+ .
T Consensus 194 ~~~~~~~~-------~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~-~~--------------------~ 245 (400)
T 3nmy_A 194 PMLQRPLS-------LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ-NS--------------------I 245 (400)
T ss_dssp HHHCCGGG-------GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH-HH--------------------H
T ss_pred cccCChhh-------cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHH-Hh--------------------c
Confidence 54332211 159999999999999873 23 4 34445554432221100 00 0
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
+.....+..|.+++. .+.+..++++..++++++.+.|++.|.+.-+..| ...+++|.+.+
T Consensus 246 g~~~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~ 322 (400)
T 3nmy_A 246 GGVQGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG 322 (400)
T ss_dssp CCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCCCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence 111233445555543 3557788899999999999999998888654322 24578888865
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=139.79 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=148.8
Q ss_pred eecCCCCCCEEEEecCC---------CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc---CChHHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTK---------SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV---DTLKPLCDVAK 71 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~---------~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~---~pl~~I~~l~~ 71 (310)
...|.. ++.+|.++ ..++.+|+++|++++++. +.+|++++++|++|.+ .++++|+++|+
T Consensus 127 ~~~g~~---~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 197 (410)
T 3e2y_A 127 RMAGAV---PVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPHNPLGKVYTRQELQVIADLCV 197 (410)
T ss_dssp HHTTCE---EEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHcCCE---EEEEeccccccccccccccCCcCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCcCHHHHHHHHHHHH
Confidence 345665 88888762 124579999999998643 5578888899999998 46999999999
Q ss_pred HhCcEEEeecccccccccChhhhhhh--cCCCCCCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccc
Q 046506 72 QFGIWVHVDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 72 ~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~ 148 (310)
+||+++++|++|+.+........... ......+++..|++|+++. ...+|+++.+ +..+....... ... ..
T Consensus 198 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~-~~~-~~--- 271 (410)
T 3e2y_A 198 KHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGP-AHLIKHLQTVQ-QNS-FY--- 271 (410)
T ss_dssp HHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECC-HHHHHHHHHHH-HTT-TC---
T ss_pred HcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEEC-HHHHHHHHHHH-Hhh-cc---
Confidence 99999999999976543221110000 0111234777899999973 3457777654 33332221100 000 00
Q ss_pred cccccCCCCceeccCCCcchHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEE
Q 046506 149 SKQVVDYKDWQITLSRRFRSLKLWFVLRN------YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRV 222 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~ 222 (310)
+.-.....++..+++. ...+.++++.++..++.+++.+.|+++ ++++..+.....+.+.+
T Consensus 272 -------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 337 (410)
T 3e2y_A 272 -------------TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADV 337 (410)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEEC
T ss_pred -------------CCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEc
Confidence 0000122233333432 124567888899999999999999987 88877554555555555
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEe-EEC-------CEeEEEEEccCCCCCHHHHHHH
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHA-VLG-------GIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~-------~~~~iRis~~~~~~t~edi~~l 293 (310)
..... .+... + .+ .....++...+. +.| +.+.+. ... +.+++|+|+. .++++++.+
T Consensus 338 ~~~~~--~~~~~---~--~~----~~~~~~~~~~ll~~~g-v~v~~g~~f~~~~~~~~~~~~iRis~~---~~~e~l~~~ 402 (410)
T 3e2y_A 338 SSLGA--DLSDM---N--SD----EPYDYKFVKWMTKHKK-LTAIPVSAFCDSKSKPHFEKLVRFCFI---KKDSTLDAA 402 (410)
T ss_dssp GGGCC--CCTTC---C--SS----CCHHHHHHHHHHHHHS-EECEEGGGGSCTTTHHHHTTEEEEECC---CCHHHHHHH
T ss_pred hhhhc--ccccc---c--cc----ccCHHHHHHHHHHHcC-EEEeCchhhCCCCCCCCCCCEEEEEEc---CCHHHHHHH
Confidence 43100 00000 0 00 000124445443 445 444442 221 2478999955 389999999
Q ss_pred HHHHHH
Q 046506 294 WTVVQE 299 (310)
Q Consensus 294 i~~l~~ 299 (310)
+++|++
T Consensus 403 l~~l~~ 408 (410)
T 3e2y_A 403 EEIFRA 408 (410)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-16 Score=144.96 Aligned_cols=257 Identities=10% Similarity=0.005 Sum_probs=151.3
Q ss_pred eecCCCCCCEEEEecCCCC----------CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC---ChHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTKSS----------SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD---TLKPLCDVA 70 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~----------~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---pl~~I~~l~ 70 (310)
+..|.. ++.+|.++.+ ++.+|+++|+++|++. +.+|++++++|++|.+. ++++|+++|
T Consensus 160 ~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~l~ 230 (447)
T 3b46_A 160 ELCGGK---VVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK------TKAVIINTPHNPIGKVFTREELTTLGNIC 230 (447)
T ss_dssp HHTTCE---EEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCE---EEEEeCCCccccccccccccCcccCHHHHHHhhccC------CeEEEEeCCCCCCCcccCHHHHHHHHHHH
Confidence 445665 8889987542 3679999999998643 45788888999999985 599999999
Q ss_pred HHhCcEEEeecccccccccCh--hhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccc
Q 046506 71 KQFGIWVHVDAAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKAT 147 (310)
Q Consensus 71 ~~~g~~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~ 147 (310)
++||+++++|++|+...+..+ .......+..+.|+++.|+||+++.| .-+|+++.+++..+....... .+...
T Consensus 231 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~-~~~~~--- 306 (447)
T 3b46_A 231 VKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAH-TRICF--- 306 (447)
T ss_dssp HHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHH-HHHTS---
T ss_pred HHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHH-hhccC---
Confidence 999999999999976543211 00000000124789999999998744 237888763454433221100 00000
Q ss_pred ccccccCCCCceeccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCc
Q 046506 148 ESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSA 226 (310)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~ 226 (310)
..+ .....++.++++... ...++++.++..++.+++.+.|.++ ++++..+.....+.+.+....
T Consensus 307 -------------~~~-~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~ 371 (447)
T 3b46_A 307 -------------ASP-SPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVK 371 (447)
T ss_dssp -------------SCC-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCC
T ss_pred -------------CCC-hHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEeccccc
Confidence 000 011223334444321 3357778888899999999999887 777764444455556654310
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEe-EEC-------CEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 227 VMDKLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHA-VLG-------GIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~-------~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
.+. +.. .+..... .....++.++|.+ .|. .+.+. ... +.+++|+|+. +++++++.+++.|
T Consensus 372 ~p~---~~~--~~~~~~~--~~~~~~~~~~l~~~~gV-~v~pg~~f~~~~~~~~~~~~iRls~~---~~~e~l~~~~~~l 440 (447)
T 3b46_A 372 IPE---DYP--YPEEILN--KGKDFRISHWLINELGV-VAIPPTEFYIKEHEKAAENLLRFAVC---KDDAYLENAVERL 440 (447)
T ss_dssp CCT---TCC--CCGGGSS--SCHHHHHHHHHHHHTCE-ECBCGGGGSCGGGGGGGTTEEEEECC---SCHHHHHHHHHHG
T ss_pred Ccc---ccc--ccccccc--CCCHHHHHHHHHHhCCE-EEECchHhCCCCccCCCCCEEEEEEe---CCHHHHHHHHHHH
Confidence 000 000 0000000 0011356666654 554 44332 111 2578999965 3799999999888
Q ss_pred HH
Q 046506 298 QE 299 (310)
Q Consensus 298 ~~ 299 (310)
++
T Consensus 441 ~~ 442 (447)
T 3b46_A 441 KL 442 (447)
T ss_dssp GG
T ss_pred HH
Confidence 76
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=132.49 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=121.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEec----cCCcccccCChHHHHHHHHH--hCcEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATI----GTTAITAVDTLKPLCDVAKQ--FGIWV 77 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~pl~~I~~l~~~--~g~~l 77 (310)
...|+. ++.+|.+++ +.+|+++|+++|++.. .+.+|++.+ ++|++|.+.|+++|+++|++ +|+++
T Consensus 145 ~~~G~~---~~~v~~~~~--g~~D~e~l~~~l~~~~----~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~l 215 (427)
T 3i16_A 145 KEFGIN---YKQVDLKED--GKPNLEEIEKVLKEDE----SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIIC 215 (427)
T ss_dssp GGGTCE---EEECCCCTT--SSCCHHHHHHHHHTCT----TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEE
T ss_pred HHcCCE---EEEecCccC--CCcCHHHHHHHhhCCC----CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEE
Confidence 345665 888888764 4899999999997311 155788887 88999999999999999999 99999
Q ss_pred EeecccccccccChhhhhhhcCCCCCCeeeeeccccccccc--ceEEEEEeCchhHHhhhcc-CCccccccccccccccC
Q 046506 78 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTL--DCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVD 154 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~ 154 (310)
+||++|+.+........ .++|+++.|+||+++++. ..|+++. +++.+++.... ....+..
T Consensus 216 ivD~a~~~~~~~~~p~~------~gaDiv~~S~sK~lgg~g~~~gG~i~~-~~~li~~l~~~~~~~~~g~---------- 278 (427)
T 3i16_A 216 FVDNCYGEFMDTKEPTD------VGADLIAGSLIKNIGGGIAPTGGYLAG-TKDCIEKTSYRLTVPGIGG---------- 278 (427)
T ss_dssp EEECTTTTTSSSSCGGG------GTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTTGG----------
T ss_pred EEECCCccccccCCccc------cCCeEEEecCcccCCCCCCceEEEEEE-CHHHHHHHHHhcccCccCc----------
Confidence 99999986653221111 158999999999998732 2366554 45444333210 1111110
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-----EEEEEEcC
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-----VVCFRVSP 224 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~~~~~~ 224 (310)
..+-.+. ..+.+++ +......++++.+++++++++.|+++ ++++. |...+ +++|.+..
T Consensus 279 ------~~~~~~~--~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~~~~i~~i~l~~ 341 (427)
T 3i16_A 279 ------ECGSTFG--VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-GFEVM-PKYDEKRSDIIQSIKFND 341 (427)
T ss_dssp ------GCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSCEEEECSS
T ss_pred ------cCCccHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCCccEEEEEEECC
Confidence 0000011 1233333 33556788999999999999999987 56775 32333 77787753
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=134.00 Aligned_cols=181 Identities=11% Similarity=0.002 Sum_probs=120.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEec----cCCcccccCChHHHHHHHHH--hCcEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATI----GTTAITAVDTLKPLCDVAKQ--FGIWV 77 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~pl~~I~~l~~~--~g~~l 77 (310)
+..|+. ++++|.+++ +.+|+++|+++|+++ +.+|++.+ ++|++|.+.|+++|+++|++ ||+++
T Consensus 130 ~~~G~~---~~~v~~~~~--g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~l 198 (409)
T 3jzl_A 130 KDFHIG---YSSVPLLEN--GDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIV 198 (409)
T ss_dssp GGGTCE---EEECCCCTT--SCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEE
T ss_pred HHcCCE---EEEeCCCCC--CCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEE
Confidence 345665 888888764 589999999999754 45888888 88999999999999999999 99999
Q ss_pred EeecccccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhcc-CCccccccccccccccC
Q 046506 78 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVD 154 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~ 154 (310)
+||++|+.+....... . .++|+++.|+||+++++.. .|++. .+++.++..... ..+.+...
T Consensus 199 ivD~a~~~~~~~~~p~---~---~g~Div~~S~sK~lgg~~~~~GG~v~-~~~~li~~l~~~~~~~~~g~~--------- 262 (409)
T 3jzl_A 199 FVDNCYGEFVEYQEPP---E---VGADIIAGSLIKNPGGGLAKTGGYIA-GKEALVDLCGYRLTTPGIGRE--------- 262 (409)
T ss_dssp EEECTTCTTTSSCCSG---G---GTCSEEEEETTSGGGTTTCSSCEEEE-ECHHHHHHHHHHHSCTTTGGG---------
T ss_pred EEeCCcccccccCCcc---c---cCCeEEEECccccCCccCCceEEEEE-eCHHHHHHHHHHhcccccccc---------
Confidence 9999998665322111 1 1589999999999987531 25554 456554433210 11111100
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-----EEEEEEcC
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-----VVCFRVSP 224 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~~~~~~ 224 (310)
.+-.... .+++++ +......++++..++++++++.|+++ ++++... ... +++|.+..
T Consensus 263 -------~g~~~~~--~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l~~ 324 (409)
T 3jzl_A 263 -------AGASLYS--LLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSFHN 324 (409)
T ss_dssp -------CCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEECSC
T ss_pred -------ccccHHH--HHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEeCC
Confidence 0000110 122332 33456778889999999999999987 6777532 323 66777753
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=133.25 Aligned_cols=247 Identities=10% Similarity=0.056 Sum_probs=144.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccCChHH---HHHHHH------H
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVDTLKP---LCDVAK------Q 72 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~pl~~---I~~l~~------~ 72 (310)
++..|.. ++.+|.++. ++.+|+++|+++|++..... ...++++..+ +|++|.+.|.++ |+++|+ +
T Consensus 143 ~~~~g~~---~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~ 217 (418)
T 3rq1_A 143 CSDTGRT---LVTYSLFDE-HNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGR 217 (418)
T ss_dssp HHHTTCE---EEEECSBCT-TSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHcCCE---EEEEeeeCC-CCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccC
Confidence 3456666 899998653 36899999999998642211 1236666667 899999988655 555666 8
Q ss_pred hCcEEEeecccccccccChhhhhhhcCCC--CCC---eeeeecccccccc-cceEEEEE--eCchhHHhhhccCCccccc
Q 046506 73 FGIWVHVDAAYAGSACICPEFRHFIDGVE--GAD---SFSLNAHKWFFTT-LDCCCLWV--KDPSDLVNSLSTNPEYLKN 144 (310)
Q Consensus 73 ~g~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~D---~~~~~~hK~l~~p-~g~g~l~v--~~~~~~~~~~~~~~~y~~~ 144 (310)
||+++++|++|.................. .-| +++.|++|.++.| ...|+++. ++++......... .+...
T Consensus 218 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-~~~~~ 296 (418)
T 3rq1_A 218 NNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVN-KSTSR 296 (418)
T ss_dssp CEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHH-HHHHH
T ss_pred CCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHH-HHHHh
Confidence 99999999999654432211111111111 123 5668999998754 34677765 2454432221100 00000
Q ss_pred cccccccccCCCCceeccCCCcchHHHHHHHHHhCHH--------HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce
Q 046506 145 KATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA--------NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA 216 (310)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~ 216 (310)
.. ......++..++...+... ...++.++..++.+++.+.|.++ ++++. ++..+
T Consensus 297 ~~----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~ 358 (418)
T 3rq1_A 297 AT----------------WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPML-PYRGG 358 (418)
T ss_dssp HH----------------TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-CCCSS
T ss_pred hc----------------cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-CCCce
Confidence 00 0001223333333333221 23355667778888888888876 77765 34444
Q ss_pred EEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHH
Q 046506 217 VVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTV 296 (310)
Q Consensus 217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~ 296 (310)
.+.+.-.+. ..++.+.|.+.|. .+.+. .+.+|+|+. ..++++++.++++
T Consensus 359 ~~~~~~~~~------------------------~~~~~~~l~~~gi-~v~~g----~~~iRis~~--~~~~~~i~~~~~~ 407 (418)
T 3rq1_A 359 FFITIPTDS------------------------ANAICEELKKEHI-YVIAL----ANGIRIAAC--GIPKCQMTGLAEK 407 (418)
T ss_dssp SEEEEECTT------------------------HHHHHHHHHHTTE-ECEEC----SSEEEEEGG--GSCHHHHTTHHHH
T ss_pred EEEEcCCCC------------------------HHHHHHHHHhCCE-EEecC----CCCeEEEEe--cCCHHHHHHHHHH
Confidence 433321111 1355666767764 44432 457999955 4689999999999
Q ss_pred HHHHHHHH
Q 046506 297 VQEHLEAL 304 (310)
Q Consensus 297 l~~~~~~~ 304 (310)
|+++++++
T Consensus 408 l~~~l~~~ 415 (418)
T 3rq1_A 408 IYNAMKSL 415 (418)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988765
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=132.40 Aligned_cols=218 Identities=11% Similarity=0.026 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++. +.++++...++++|.+.| +++|+++|++||+++++|++|++.............++ .
T Consensus 168 d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~ 240 (395)
T 3nx3_A 168 DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI-L 240 (395)
T ss_dssp CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC-C
Confidence 789999998643 457777778888899888 99999999999999999999974432211111001122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++++ .|.++++.++|+++++++ .+.+.+.. ..... ++. +-+..+.+..++++.+..
T Consensus 241 ~d~~t~--sK~~~~G~~~G~~~~~~~-~~~~~~~~--~~~~~--------------~~~-~~~~~~~aa~aal~~~~~-- 298 (395)
T 3nx3_A 241 PDIMTS--AKALGCGLSVGAFVINQK-VASNSLEA--GDHGS--------------TYG-GNPLVCAGVNAVFEIFKE-- 298 (395)
T ss_dssp CSEEEE--CGGGTTTSCCEEEEECHH-HHHHHSCT--TCCSS--------------CBS-CCHHHHHHHHHHHHHHHH--
T ss_pred CCEEEe--cccccCCCceEEEEEchh-hhhhhcCC--cccCC--------------CCC-CCHHHHHHHHHHHHHHHh--
Confidence 677665 498887777888876544 31232211 00000 000 001122223334433322
Q ss_pred HHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
++..++..++.+++++.|.+ +|.+... ++..+++.+.+.... ...++.+.+.
T Consensus 299 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~----------------------~~~~~~~~l~ 354 (395)
T 3nx3_A 299 -EKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSV----------------------KVAKVIQKCQ 354 (395)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS----------------------CHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcc----------------------hHHHHHHHHH
Confidence 34455555555565555543 4545433 234556777665421 0135667777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
++|.+.. +. +.+.+|++++ ..+|++|+++++++|+++++
T Consensus 355 ~~Gi~v~-~~---~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 355 ENALLLI-SC---GENDLRFLPP-LILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp HTTEECE-EE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HCCCEEe-cC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 7875443 32 3578999955 67899999999999998765
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=132.82 Aligned_cols=173 Identities=10% Similarity=0.100 Sum_probs=119.5
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
+|+. ++++|.+ |+++|+++|++. +.+|++..++|++|.+.|+++|+++|++||+++++|++|+.
T Consensus 144 ~g~~---~~~v~~~-------d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~ 207 (414)
T 3ndn_A 144 WGVQ---TVFVDGD-------DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFAT 207 (414)
T ss_dssp TTCE---EEEECTT-------CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTH
T ss_pred cCcE---EEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcc
Confidence 5665 7777664 689999999754 34788899999999999999999999999999999999986
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+....+. . .++|+++.|++|+++++.. .|+++.+++ .+.+.+.. +... .+
T Consensus 208 ~~~~~~~------~-~g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~---~~~~-----------------~g 259 (414)
T 3ndn_A 208 PLLQQGF------P-LGVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQK---LMRH-----------------TG 259 (414)
T ss_dssp HHHCCCG------G-GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHH---HHHH-----------------HC
T ss_pred cccCCch------h-cCCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHH---HHHH-----------------cC
Confidence 5433221 1 1589999999999976542 566666543 33211110 0000 01
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
........|.+++ +.+.+..++++..++++++.+.|++.|++..+..| ..++++|.+.+
T Consensus 260 ~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~ 335 (414)
T 3ndn_A 260 PAMSAFNAWVLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC 335 (414)
T ss_dssp CCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS
T ss_pred CCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC
Confidence 1123344444444 34667888899999999999999998888644322 24578888865
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-17 Score=148.21 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=149.9
Q ss_pred ceecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++..|.. ++.+|.++ ++.+.+|+++|+++|++.. +.++++++++|++|.+.| +++|+++|++||++++
T Consensus 130 ~~~~g~~---~~~~~~~~~~g~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li 201 (392)
T 3b1d_A 130 VRLNNRK---LVSNSLKEENGLFQIDFEQLENDIVEND-----VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILV 201 (392)
Confidence 4455665 78888853 3346699999999997321 336667788899999866 9999999999999999
Q ss_pred eecccccccccChhhhhhh---cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 79 VDAAYAGSACICPEFRHFI---DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~---~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
+|++|+.+........... ......+.+..+++|+++.| ..+|++++.++............+.
T Consensus 202 ~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~------------ 269 (392)
T 3b1d_A 202 SDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNN------------ 269 (392)
Confidence 9999976654321111110 00013457789999999733 4567777665533322111111110
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEE-EEEcCCcchhhhh
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVC-FRVSPSAVMDKLK 232 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~-~~~~~~~~~~~~~ 232 (310)
+.+.-.....++.++++ .+.+.+++..++..++.+++.+.|++ +|++++. ++..+.+. +.+....
T Consensus 270 -----~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~i~~~~~~------ 336 (392)
T 3b1d_A 270 -----HHEVSSLGYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KPQGTYLIWLDFSDYG------ 336 (392)
Confidence 00000111222223333 12456777888888899999999987 7888775 34444443 4443210
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
....++.+.|. +.|.....+... .+.+++|+++.. ++++++.+++.|++.++
T Consensus 337 ---------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 337 ---------------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA---PKSLVEEICKRIVCCLP 391 (392)
Confidence 01135666665 456544332222 245789999553 57899999999887653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=134.96 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=143.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEE-eccCCcccccCChH---HHHHHH-HHhCcEEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCA-TIGTTAITAVDTLK---PLCDVA-KQFGIWVH 78 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~-~~~~~~~G~~~pl~---~I~~l~-~~~g~~l~ 78 (310)
+..|.. ++.+|.+++ .+|+++|+++|++.. .+.+|++ .+.+|++|.+.|.+ +|+++| ++||++++
T Consensus 142 ~~~g~~---~~~v~~~~~---g~d~~~l~~~l~~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li 211 (423)
T 3ez1_A 142 QTLGFE---LLTVDMQSD---GPDVDAVERLAGTDP----SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIF 211 (423)
T ss_dssp HHHTCE---EEEEEEETT---EECHHHHHHHHHSCT----TEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEE
T ss_pred HHcCCE---EEeccCCCC---CCCHHHHHHHHhhCC----CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEE
Confidence 456666 899999864 499999999996211 1445544 47789999998877 888899 99999999
Q ss_pred eecccccccccC-h-----hhhhhh--cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccc
Q 046506 79 VDAAYAGSACIC-P-----EFRHFI--DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 79 vD~a~~~~~~~~-~-----~~~~~~--~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
+|++|+...+.. . ...... .+..+.+++..|++|+++...++|+++.++ ..+.........+...
T Consensus 212 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~------ 284 (423)
T 3ez1_A 212 ADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE-DNIRWLSKYLGAQSIG------ 284 (423)
T ss_dssp EECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH-HHHHHHHHHHHHSCSC------
T ss_pred EECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH-HHHHHHHHHHhhhccC------
Confidence 999997432211 0 001100 011235688899999866667788777653 3332221100000000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHH-hC--HHHHHHHHHHHH----HHHHHHHHHHcCCC-CeEEecCCCceEEEEEE
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRN-YG--VANLRHFLRSHV----NMAKLFERLVGSDK-RFEVVFPRHFAVVCFRV 222 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~----~~a~~l~~~L~~~~-~~~v~~~~~~~~v~~~~ 222 (310)
.-......+..+++. .+ ...+++..+... .+.+.+.+.|.+++ ++.+..+.....+.+.+
T Consensus 285 ------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~ 352 (423)
T 3ez1_A 285 ------------PNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDT 352 (423)
T ss_dssp ------------CCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEE
T ss_pred ------------CCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEEC
Confidence 000111222222322 11 122333333333 33444555555554 47766555566677777
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEE-e-EE-----CCEeEEEEEccCCCCCHHHHHHHHH
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTH-A-VL-----GGIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~-~~-----~~~~~iRis~~~~~~t~edi~~li~ 295 (310)
...+ ...+.+.+.+.|. .+.+ . .+ .+.+++|+|+. . .++++++.+++
T Consensus 353 ~~~~-----------------------~~~~~~~l~~~gv-~v~~~g~~~~~~~~~~~~~iRis~~-~-~~~~~i~~~~~ 406 (423)
T 3ez1_A 353 AEPV-----------------------ADRVVKLAEAAGV-SLTPAGATYPAGQDPHNRNLRLAPT-R-PPVEEVRTAMQ 406 (423)
T ss_dssp SSSC-----------------------HHHHHHHHHHTTE-ECCCTTTTSSTTCCSSSCEEEECCS-S-SCHHHHHHHHH
T ss_pred CCCc-----------------------HHHHHHHHHHCCc-EEecCcccccCCCCCCCCeEEEEcC-C-CCHHHHHHHHH
Confidence 6421 1345666667764 4433 1 11 24579999965 3 48999999999
Q ss_pred HHHHHHHHHh
Q 046506 296 VVQEHLEALL 305 (310)
Q Consensus 296 ~l~~~~~~~~ 305 (310)
.|+++++++.
T Consensus 407 ~l~~~l~~~~ 416 (423)
T 3ez1_A 407 VVAACIRLAT 416 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987763
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=141.34 Aligned_cols=182 Identities=12% Similarity=0.117 Sum_probs=119.0
Q ss_pred eecCCCCCCEEEEecCCCCCcc----c-----CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYG----L-----SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG 74 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~----i-----d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g 74 (310)
.+.|.. +++++++.+ .+. + |+++|+++|++.++.. .|.+++++++ |++|.+.|+++|+++|++++
T Consensus 253 ~lsGa~---pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k-~p~~vivt~p-n~~G~v~dl~~I~ela~~~~ 326 (715)
T 3n75_A 253 MMSDVT---PIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNAT-WPVHAVITNS-TYDGLLYNTDFIKKTLDVKS 326 (715)
T ss_dssp HHSCCE---EEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCC-SCSEEEEESS-CTTSEEECHHHHHHHCCCSE
T ss_pred HHcCCE---EEEEecccc-ccccccCcccccCCHHHHHHHHhhCcCcc-CceEEEEECC-CCCCccCCHHHHHHHhCcCc
Confidence 345555 888887654 343 3 8999999998753211 1346777777 88999999999999999774
Q ss_pred cEEEeecccccccccChhhhhhhcCCC---CCCee---eeecccccccccceEEEEEeCchhHHhhhccCCccccccccc
Q 046506 75 IWVHVDAAYAGSACICPEFRHFIDGVE---GADSF---SLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 75 ~~l~vD~a~~~~~~~~~~~~~~~~~~~---~~D~~---~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~ 148 (310)
++||+||+++....+...+. ..+. .+|.+ +.|+||+++++.++|++++++... ...+.....++..++
T Consensus 327 --livDEAH~~~~~f~~~~~~~-~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~-~~~~~~~~~~~~STS-- 400 (715)
T 3n75_A 327 --IHFDSAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVN-EETFNEAYMMHTTTS-- 400 (715)
T ss_dssp --EEEECTTCTTGGGSGGGTTS-STTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCC-HHHHHHHHHHTSCSS--
T ss_pred --EEEccccccccccCCccccc-cccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhh-HHHHHHHHHhhcCCC--
Confidence 79999998776444433211 1121 26876 899999999999999999987621 111111111111111
Q ss_pred cccccCCCCceeccCCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecC
Q 046506 149 SKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKR------FEVVFP 212 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~------~~v~~~ 212 (310)
-. +..+++-++.+.+....-++++++..++++++++.|.++++ ++++.+
T Consensus 401 ---------------psy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~ 456 (715)
T 3n75_A 401 ---------------PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQP 456 (715)
T ss_dssp ---------------CCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSC
T ss_pred ---------------chHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCc
Confidence 11 12344555666665333355789999999999999988764 566643
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=132.96 Aligned_cols=231 Identities=12% Similarity=0.004 Sum_probs=144.1
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.+|.++.+.+..+++++ + .+.+|++..++|++|.+.| +++|+++|++||+++++|++|+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-----~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~ 257 (449)
T 3qgu_A 189 IEYMVCNPDNHFFPDLSKA-----K------RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISN 257 (449)
T ss_dssp EEEEECCGGGTTCCCGGGC-----C------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCC
T ss_pred eEEEecccccCCcCChhHc-----C------CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcC
Confidence 8888988654345554321 1 2446777788999999876 788899999999999999999875443
Q ss_pred Chhhhhh--hcCCCCCCeeeeecccccc-cccceEEEEEeCchhHHh-------hhccCCccccccccccccccCCCCce
Q 046506 90 CPEFRHF--IDGVEGADSFSLNAHKWFF-TTLDCCCLWVKDPSDLVN-------SLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 90 ~~~~~~~--~~~~~~~D~~~~~~hK~l~-~p~g~g~l~v~~~~~~~~-------~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
....... .....+.+++..+++|+++ ....+|+++.+++ .+.. .+.....+ .
T Consensus 258 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~ 319 (449)
T 3qgu_A 258 PDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRVMTT-----------------C 319 (449)
T ss_dssp TTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHHHHH-----------------S
T ss_pred CCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHHhhc-----------------c
Confidence 2111000 1111235688999999997 3456788876544 2210 00000000 0
Q ss_pred eccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.. ....+...++...+. .+.++++.++..++.+++.+.|+++ ++++..+....++.+.+.+.+
T Consensus 320 ~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~---------- 385 (449)
T 3qgu_A 320 FN---GASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPGKP---------- 385 (449)
T ss_dssp CC---CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECTTSC----------
T ss_pred cC---CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECCCCC----------
Confidence 00 012233334444443 3567888899999999999999987 888775555666766665211
Q ss_pred cccchhHHHHHHHHHHHHHHHHhc-CcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINAS-GKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.++ |. ++.+.. . .+.+++|+|+. .++++++.++++|++++++
T Consensus 386 -------------~~~~~~~l~~~~gI-~v~pg~~f~~~~~~~iRis~~---~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 386 -------------SWDVFAEILERCNI-VTTPGSGYGPAGEGFVRASAF---GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp -------------HHHHHHHHHHHHCE-ECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHC-
T ss_pred -------------HHHHHHHHHHHCCE-EEecchHhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 13566666665 54 444322 1 23579999943 4899999999999987744
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=134.57 Aligned_cols=243 Identities=12% Similarity=0.018 Sum_probs=144.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEE-EeccCCcccccCChH---HHHHHHH-HhCcEEE
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLC-ATIGTTAITAVDTLK---PLCDVAK-QFGIWVH 78 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~-~~~~~~~~G~~~pl~---~I~~l~~-~~g~~l~ 78 (310)
+..|.. ++.+|.+++ .+|+++|++++++. .+.+|+ ..+.+|++|.+.|.+ +|+++|+ +||++++
T Consensus 149 ~~~g~~---~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li 217 (422)
T 3d6k_A 149 EHFGFE---MINVPMTDE---GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIV 217 (422)
T ss_dssp HHHTCE---EEEEEEETT---EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEE
T ss_pred HHcCCE---EEecCCCCC---CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEE
Confidence 445666 899999863 39999999999642 144555 577889999998876 8888888 9999999
Q ss_pred eecccccccccCh--hhhhhh-----cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccc
Q 046506 79 VDAAYAGSACICP--EFRHFI-----DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 79 vD~a~~~~~~~~~--~~~~~~-----~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
+|++|+...+... ...... .+....+++..|++|+ +.| ..+|+++.+ +..+.........+.
T Consensus 218 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~-------- 287 (422)
T 3d6k_A 218 WDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASS-KENIEWYASHANVRG-------- 287 (422)
T ss_dssp EECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHC--------
T ss_pred EECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeC-HHHHHHHHHHHHhhc--------
Confidence 9999974221111 010110 1122356788999998 444 347888765 433322211100000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEE
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYGV-----ANLRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFR 221 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~ 221 (310)
. ....+...++...+.. +.+++..++..+..+.+.+.|.+ ++++.+..+.....+.+.
T Consensus 288 -----------~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~ 354 (422)
T 3d6k_A 288 -----------I--GPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVD 354 (422)
T ss_dssp -----------S--CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEE
T ss_pred -----------C--CCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEE
Confidence 0 0122333333333432 23444455555555555555543 434666545455666676
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEE-eE-E-----CCEeEEEEEccCCCCCHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTH-AV-L-----GGIYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~-~-----~~~~~iRis~~~~~~t~edi~~li 294 (310)
+...+ ...+.+.+.+.|. .+.+ .. + .+.+++|+|+. . +++++++.++
T Consensus 355 ~~~~~-----------------------~~~~~~~l~~~gV-~v~~~g~~f~~~~~~~~~~iRis~~-~-~~~e~i~~~~ 408 (422)
T 3d6k_A 355 VVPGT-----------------------ASRVVELAKEAGI-ALTGAGSSFPLHNDPNNENIRLAPS-L-PPVAELEVAM 408 (422)
T ss_dssp ESTTC-----------------------HHHHHHHHHHTTE-ECCCTTTTSGGGCCTTSCEEEECCS-S-SCHHHHHHHH
T ss_pred CCCCC-----------------------HHHHHHHHHHCCe-EEEcCccccCCCCCCCCCeEEEecC-C-CCHHHHHHHH
Confidence 65421 1345566666764 4433 21 1 13578999966 3 8899999999
Q ss_pred HHHHHHHHHHhh
Q 046506 295 TVVQEHLEALLS 306 (310)
Q Consensus 295 ~~l~~~~~~~~~ 306 (310)
++|++++.++.+
T Consensus 409 ~~l~~~l~~~~~ 420 (422)
T 3d6k_A 409 DGFATCVLMAAL 420 (422)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999877643
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-15 Score=137.00 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=144.9
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCcccccCChH---HHHHHH-HHhCcEE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCAT-IGTTAITAVDTLK---PLCDVA-KQFGIWV 77 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~-~~~~~~G~~~pl~---~I~~l~-~~~g~~l 77 (310)
++..|.. ++.+|++++ .+|+++|+++|+.. .+.+|+++ +.+|++|.+.|.+ +|+++| ++||+++
T Consensus 150 ~~~~g~~---~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~i 218 (427)
T 3ppl_A 150 TERFGFE---MISVPMNED---GPDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRV 218 (427)
T ss_dssp HHHTTCE---EEEEEEETT---EECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEE
T ss_pred HHHcCCE---EEEeCCCCC---CCCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEE
Confidence 3456776 999999864 39999999999421 14455544 7789999998877 899999 9999999
Q ss_pred EeecccccccccChh-----hhhhh--cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccc
Q 046506 78 HVDAAYAGSACICPE-----FRHFI--DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK 150 (310)
Q Consensus 78 ~vD~a~~~~~~~~~~-----~~~~~--~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~ 150 (310)
++|++|+...+.... ..... .+..+.+++..|++|+++...++|+++.. +..+....... .+.
T Consensus 219 i~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~-~~l~~~~~~~~-~~~-------- 288 (427)
T 3ppl_A 219 VWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTS-AENRKWYTGHA-GIR-------- 288 (427)
T ss_dssp EEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECC-HHHHHHHHHHH-HHH--------
T ss_pred EEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcC-HHHHHHHHHHh-hcc--------
Confidence 999999764322110 11100 01224568889999996655677877654 43332221100 000
Q ss_pred cccCCCCceeccCCCcchHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHH----cCCCCeEEecCCCceEEEEE
Q 046506 151 QVVDYKDWQITLSRRFRSLKLWFVLRNYGV-----ANLRHFLRSHVNMAKLFERLV----GSDKRFEVVFPRHFAVVCFR 221 (310)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~a~~l~~~L----~~~~~~~v~~~~~~~~v~~~ 221 (310)
+.....+..+++...+.. ..+.+..++..+..+.+.+.| .+++++.+..+.....+.+.
T Consensus 289 ------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~ 356 (427)
T 3ppl_A 289 ------------GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLD 356 (427)
T ss_dssp ------------CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEE
T ss_pred ------------cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEE
Confidence 001122222333333322 223444444444444454444 44445776655456666676
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEE-e-EE-----CCEeEEEEEccCCCCCHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTH-A-VL-----GGIYAIRFAAGATLTEERHVMVAW 294 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~-~~-----~~~~~iRis~~~~~~t~edi~~li 294 (310)
+...+ ..++.+.+.+.|. .+.+ . .+ .+.+++|+|+. . .++++++.++
T Consensus 357 ~~~~~-----------------------~~~~~~~l~~~gv-~v~~~g~~~~~~~~~~~~~~Ris~~-~-~~~~~i~~~~ 410 (427)
T 3ppl_A 357 VVPGT-----------------------ASRVAELAKEAGI-ALTGAGSSYPLRQDPENKNLRLAPS-L-PPVEELEVAM 410 (427)
T ss_dssp CSTTC-----------------------HHHHHHHHHHTTE-ECCCTTTTSGGGCCTTSCEEEECCS-S-SCHHHHHHHH
T ss_pred CCcch-----------------------HHHHHHHHHHCCC-EEecCcCcCCCCCCCCCCeEEEECC-C-CCHHHHHHHH
Confidence 65421 1356666767764 4433 1 11 24679999975 3 4899999999
Q ss_pred HHHHHHHHHHh
Q 046506 295 TVVQEHLEALL 305 (310)
Q Consensus 295 ~~l~~~~~~~~ 305 (310)
+.|+++++++.
T Consensus 411 ~~l~~~l~~~~ 421 (427)
T 3ppl_A 411 DGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=132.26 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc----cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITA----VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++. +.+|+++..+|++|. .+++++|+++|++||+++++|++|++.........-...+. .
T Consensus 172 d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~ 244 (397)
T 2ord_A 172 NVEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-V 244 (397)
T ss_dssp CHHHHHHHCCTT------EEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-C
T ss_pred CHHHHHHHhhcC------eEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCC-C
Confidence 789999998643 568888889999998 36799999999999999999999974322111110001121 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+|+++ .+|+++++..+|+++++++ .. .+. .. ... . ++ ..-......+.++++.+..
T Consensus 245 ~d~~s--~sK~~~~G~r~G~~~~~~~-~~--~l~--~~---~~~---------~--~~-~~~~~~~~a~~~~l~~~~~-- 300 (397)
T 2ord_A 245 PDVLT--TAKGLGGGVPIGAVIVNER-AN--VLE--PG---DHG---------T--TF-GGNPLACRAGVTVIKELTK-- 300 (397)
T ss_dssp CSEEE--ECGGGGTTSCCEEEEECST-TC--CCC--TT---SSC---------C--SS-TTCHHHHHHHHHHHHHHTS--
T ss_pred CCeee--eccccCCCcCeEEEEEchH-hc--ccC--CC---CcC---------C--CC-CCCHHHHHHHHHHHHHHHh--
Confidence 68764 4799997667899887655 22 111 00 000 0 00 0001122334444544432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+++.++..++++++.+.|+++ +.+... ++..+++.+.+.... ...++.+.|.
T Consensus 301 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~----------------------~~~~l~~~l~ 356 (397)
T 2ord_A 301 -EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV-RGMGLMIGIQFREEV----------------------SNREVATKCF 356 (397)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS----------------------CHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE-EEEeEEEEEEECChH----------------------HHHHHHHHHH
Confidence 456677777888888888653 322222 234566777765420 0135667777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+.|. .+.+. +.+.+|++++ ..++++|+++++++|++++.
T Consensus 357 ~~gi-~v~~~---~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 357 ENKL-LVVPA---GNNTIRFLPP-LTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp HTTE-ECEEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HCCC-EEccC---CCCEEEEECC-cCCCHHHHHHHHHHHHHHHh
Confidence 7764 44432 3568999965 57899999999999998764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-14 Score=129.65 Aligned_cols=222 Identities=8% Similarity=-0.006 Sum_probs=133.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|... .+.+|+++...+++|.+. ++++|+++|++||+++++|++|.+.........-...++ .
T Consensus 200 d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~ 273 (433)
T 1z7d_A 200 DLEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-K 273 (433)
T ss_dssp CHHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred CHHHHHHHhCCC-----CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-C
Confidence 789999999411 145677766667789765 799999999999999999999964322111111001122 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++ +.+|++++. ...|++++++ +.. +.+. +.. .. .++ .+-+..+.++.++++.+..
T Consensus 274 ~di~--t~sK~l~~G~~~~G~v~~~~-~~~-~~l~--~~~---~~-----------~t~-~~~~~~~aaa~aal~~~~~- 331 (433)
T 1z7d_A 274 PDVI--LLGKALSGGHYPISAVLAND-DIM-LVIK--PGE---HG-----------STY-GGNPLAASICVEALNVLIN- 331 (433)
T ss_dssp CSEE--EECGGGGTTSSCCEEEEECH-HHH-TTCC--TTC---CC-----------CTT-TTCHHHHHHHHHHHHHHHH-
T ss_pred CCEE--EECccccCCCCCeEEEEECH-HHH-hhhc--ccc---cc-----------ccC-CCCHHHHHHHHHHHHHHHh-
Confidence 6876 556999854 3488887754 333 2221 100 00 000 1111222333444544422
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+++.++..++.+++.+.|+++ |.+... ++..+++.+.+.... ....++.+.|
T Consensus 332 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~~---------------------~~~~~~~~~l 387 (433)
T 1z7d_A 332 --EKLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNEL---------------------VNVLDICLKL 387 (433)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTTT---------------------CCHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccCh---------------------hHHHHHHHHH
Confidence 246677777888888887653 333222 234556777665420 0013567777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.++|. .+.+. +.+++|++++ ..+|++|+++++++|++++.++.
T Consensus 388 ~~~Gv-~v~~~---~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 388 KENGL-ITRDV---HDKTIRLTPP-LCITKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp HHTTE-ECCEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCe-EEecC---CCCEEEEECC-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 77774 44332 3568999955 57899999999999999887764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-13 Score=125.72 Aligned_cols=219 Identities=12% Similarity=-0.022 Sum_probs=131.1
Q ss_pred cCHHHHH-HHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC
Q 046506 26 LSPDSLM-AKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 100 (310)
Q Consensus 26 id~~~Le-~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~ 100 (310)
+|+++|+ ++|++.. ....+.+++++..++++|.+.| +++|+++|++||+++++|++|+..........-...++
T Consensus 194 ~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~ 272 (419)
T 2eo5_A 194 RVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272 (419)
T ss_dssp HHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred HHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC
Confidence 4789999 9987520 0001445666656667898777 99999999999999999999974432211110001122
Q ss_pred CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhC
Q 046506 101 EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (310)
..|+++ ..|+++++ ..+|+++.+++ .. .+. ..... ++. +-+....++.++++.+
T Consensus 273 -~~d~~t--~sK~~~~G~~riG~~~~~~~-~~--~~~---~~~~~--------------t~~-~n~~~~~aa~aal~~~- 327 (419)
T 2eo5_A 273 -VPDVIT--LAKALGGGIMPIGATIFRKD-LD--FKP---GMHSN--------------TFG-GNALACAIGSKVIDIV- 327 (419)
T ss_dssp -CCSEEE--ECGGGGTTTSCCEEEEEEGG-GC--CC-----------------------CCC-CCHHHHHHHHHHHHHH-
T ss_pred -CCCEEE--ecccccCCccceEEEEEchH-hh--cCC---cccCC--------------CCC-CCHHHHHHHHHHHHHH-
Confidence 367664 56998876 77898887654 22 111 00000 000 0011222333344322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 180 ~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
++..++..++.+++.+.|.++ +..+ ++..+++.+.+.+. ..... +.+.|.+
T Consensus 328 ----~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~~---------------------~~~~~-~~~~l~~ 378 (419)
T 2eo5_A 328 ----KDLLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNEK---------------------KVRDR-IIGESFK 378 (419)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSCH---------------------HHHHH-HHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEecC---------------------ccHHH-HHHHHHH
Confidence 237788888999999999875 2222 23455666655331 11234 6677777
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.|. .+.+. +.+++|++++ ..++++++++++++|+++++++
T Consensus 379 ~Gv-~v~~~---~~~~lRis~~-~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 379 RGL-LLLPA---GRSAIRVIPP-LVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp TTE-ECEEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCC-EEecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 775 44332 2468999954 6789999999999999887653
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-15 Score=134.00 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEE-EEEeccCCccc-ccCChHHHHHHHHHhCcEEEeecccccccc-cChhhhhhhcCCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLF-LCATIGTTAIT-AVDTLKPLCDVAKQFGIWVHVDAAYAGSAC-ICPEFRHFIDGVEGA 103 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~-v~~~~~~~~~G-~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~ 103 (310)
|+++|+++ ++ .+.+ |++.+.+|++| .+.|+++|+++|++||+++++|++|+.+.. +...... .. .++
T Consensus 130 d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~--~~~ 199 (374)
T 2aeu_A 130 KVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA-LK--LGA 199 (374)
T ss_dssp CHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH-HH--HTC
T ss_pred CHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCc-cc--cCC
Confidence 67888877 32 2457 77788889999 899999999999999999999999976531 1100000 11 147
Q ss_pred CeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 104 DSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
|+++.|+||++++| ++|+++.+++ .+....... .+... . .-.+.+..+.++++.+..+.+
T Consensus 200 di~~~S~sK~l~g~-~~G~~~~~~~-~~~~l~~~~-~~~~~-~----------------~~~~~~~a~~~al~~~~~~~~ 259 (374)
T 2aeu_A 200 DLVVTSTDKLMEGP-RGGLLAGKKE-LVDKIYIEG-TKFGL-E----------------AQPPLLAGIYRALKNFNLERI 259 (374)
T ss_dssp SEEEEETTSSSSSC-SCEEEEEEHH-HHHHHHHHH-HTTTC-B----------------CCHHHHHHHHHHHHHCCHHHH
T ss_pred cEEEecCcccccCc-ceEEEEECHH-HHHHHHHhh-ccccC-C----------------CCHHHHHHHHHHHHHHhHHHH
Confidence 99999999998776 7788776643 333221110 00000 0 000122333444444432234
Q ss_pred HHHHHHHHHH----HHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 184 RHFLRSHVNM----AKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 184 ~~~~~~~~~~----a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
++..++...+ .+.+.+.|..+ +++.+...+. +.+.++..... .. .... ..++...
T Consensus 260 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~-g~~~~~~~~~~---------------~~-~~~~-~~~~~~~ 321 (374)
T 2aeu_A 260 RKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT-GFVIKRVYKDD---------------TI-NIKK-LIEIGFN 321 (374)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS-EEEEEEEESSH---------------HH-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc-eEEEEeecccc---------------cc-cccc-hHHHHHH
Confidence 4444444444 35556666554 3566543333 33333332211 00 0000 1123333
Q ss_pred H-HhcCcEEEEEeE-ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 257 I-NASGKAYMTHAV-LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 257 l-~~~g~~~~~~~~-~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ .+.|.....+.. ..+.+++|++++....++++++++.++|++.++++.+
T Consensus 322 ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 322 LLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp HHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 345643332211 2235689999875555666799999999999888754
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.22 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=134.0
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 100 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~ 100 (310)
+.+|+++|+ +++. +.++++++++|++|.+.| +++|+++|++||+++++|++|+.+..... +.......
T Consensus 168 ~~~d~~~l~--~~~~------~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~ 238 (417)
T 3g7q_A 168 YHVDFEHLH--IGEE------TGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGII-FSEARPLW 238 (417)
T ss_dssp EECCGGGCC--CCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCB-CSCCCCCC
T ss_pred cccCHHHhc--cccC------ceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccc-ccccccCC
Confidence 568999988 4332 557888899999999999 89999999999999999999964321111 11101112
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
...+++..|++|++.....+|+++. ++............+.. ++.......+...++....
T Consensus 239 ~~~~i~~~s~sK~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~ 299 (417)
T 3g7q_A 239 NPNIILCMSLSKLGLPGSRCGIIIA-NDKTITAIANMNGIISL------------------APGGMGPAMMCEMIKRNDL 299 (417)
T ss_dssp CTTEEEEEESGGGTCTTSCCEEEEC-CHHHHHHHHHHHHHHCC------------------CCCSHHHHHHHHHHHTTCH
T ss_pred CCCEEEEEechhccCCCcceEEEEe-CHHHHHHHHHhhcceee------------------CCCcHHHHHHHHHHcCcch
Confidence 2467888999996444445777654 44443222111000000 0001112222223322211
Q ss_pred H-HHHH-HHHHHHHHHHHHHHHHcC-CC--CeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 181 A-NLRH-FLRSHVNMAKLFERLVGS-DK--RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 181 ~-~~~~-~~~~~~~~a~~l~~~L~~-~~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
. ...+ +.++..++.+.+.+.|.+ ++ ++.+..+.....+.+.+..... + ..++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--------------~-------~~~l~~ 358 (417)
T 3g7q_A 300 LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPI--------------T-------TELLYQ 358 (417)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSS--------------C-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCC--------------C-------HHHHHH
Confidence 1 1222 445556666677777755 44 4777645455566666653110 0 135667
Q ss_pred HHHhcCcEEEEEeEE-CC--------EeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 256 SINASGKAYMTHAVL-GG--------IYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~-~~--------~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.+.+.|.....+... .+ .+++|+|+. . ++++|+.+++.|++++.++.+
T Consensus 359 ~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~-~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 359 RLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV-P--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp HHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESC-S--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEECchhhCCCCccccccCCCeEEEEec-C--CHHHHHHHHHHHHHHHHHHHh
Confidence 776777543332211 11 469999965 2 899999999999999877643
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=131.44 Aligned_cols=238 Identities=12% Similarity=0.013 Sum_probs=133.6
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
+|+++|+++|++.. ...+.+++++..++++|.+.| +++|+++|++||+++++|++|+..........-...++
T Consensus 187 ~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~- 263 (433)
T 1zod_A 187 AELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV- 263 (433)
T ss_dssp HHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-
Confidence 57999999997531 012445666555577897766 99999999999999999999974432221111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|+++ ..|+++++..+|++++++ +.. +.+... .+.... ++ ++-+....++.++++.+..
T Consensus 264 ~~di~s--~sK~~~~G~~ig~~~~~~-~~~-~~~~~~-~~~~~~-------------t~-~~~~~~~~a~~aal~~~~~- 323 (433)
T 1zod_A 264 TPDILT--LSKTLGAGLPLAAIVTSA-AIE-ERAHEL-GYLFYT-------------TH-VSDPLPAAVGLRVLDVVQR- 323 (433)
T ss_dssp CCSEEE--ECHHHHTTSSCEEEEECH-HHH-HHHHHT-TCCCCC-------------TT-TTCHHHHHHHHHHHHHHHH-
T ss_pred CCCEEE--ecccccCCCCeeEEEEhH-HHH-HhhccC-CCCCCC-------------CC-CcCHHHHHHHHHHHHHHHh-
Confidence 357654 559998766788888764 333 222111 111000 00 0001122233344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+...++..++.+++++.|++ .+.+... ++..+++.+.+...... ..+ + .....++.+.+
T Consensus 324 --~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~---------~~~-~----~~~~~~~~~~l 386 (433)
T 1zod_A 324 --DGLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRT---------KEP-A----DGLGAKITREC 386 (433)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTT---------TEE-C----TTHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccc---------cCC-C----hHHHHHHHHHH
Confidence 23556666777777777765 3444333 23455666665431000 000 0 01124566777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.|.+..........+++|++++ ..+++++++.++++|++.+.++
T Consensus 387 ~~~Gv~v~~~~~~~~~~~lRi~~~-~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 387 MNLGLSMNIVQLPGMGGVFRIAPP-LTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp HHTTEECCEECCTTSCCEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCeEeccCCCCCCCEEEEECC-cCCCHHHHHHHHHHHHHHHHHh
Confidence 777754333221122378999855 5789999999999999887654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=134.36 Aligned_cols=276 Identities=8% Similarity=0.021 Sum_probs=151.3
Q ss_pred ceecCCCCCCEEEEecCC--CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChH---HHHHHHH-HhCcE
Q 046506 3 AQIVGIDVKNFRAIKTTK--SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLK---PLCDVAK-QFGIW 76 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~--~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~---~I~~l~~-~~g~~ 76 (310)
++..|.+ ++.++++. +.++.+|+++|++++++. +.+|++++++|++|.+.|.+ +|+++|+ +||++
T Consensus 210 ~~~~g~~---~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~ 280 (533)
T 3f6t_A 210 PELKDYE---LVEVDLHSYEKNDWEIEPNEIEKLKDPS------IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLM 280 (533)
T ss_dssp GGGGGSE---EEEECCCEETTTTSEECHHHHHHHSCTT------EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCE
T ss_pred HHHcCCe---EEEEEecCCcccCCCCCHHHHHHHhCCC------CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCE
Confidence 4456666 88888864 335789999999998653 45777788899999998876 7888888 68999
Q ss_pred EEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccc--eEEEEEeCchhHHhhhccCCc---------ccccc
Q 046506 77 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPE---------YLKNK 145 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~---------y~~~~ 145 (310)
+++|.+|+............ ..+.++++.|++|.++.| | +|++++++...+.+.....++ |....
T Consensus 281 li~De~y~~~~~~~~~~~~~---~~~~~i~~~S~SK~~g~~-G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~ 356 (533)
T 3f6t_A 281 IISDEVYGAFVPNFKSIYSV---VPYNTMLVYSYSKLFGCT-GWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVV 356 (533)
T ss_dssp EEEECTTGGGSTTCCCHHHH---SGGGEEEEEESHHHHTCG-GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTC
T ss_pred EEEcCCccccccCccCHhhc---CCCCEEEEecCcccCCCc-ccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccc
Confidence 99999997554322111111 113458889999998744 5 788888776433322211110 00000
Q ss_pred c-cccccc--------cCCCCceeccCCCcchHH-HHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHcCCCCe
Q 046506 146 A-TESKQV--------VDYKDWQITLSRRFRSLK-LWFVLRNY--------GVANLRHFLRSHVNMAKLFERLVGSDKRF 207 (310)
Q Consensus 146 ~-~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~~~~~~~~~~~~a~~l~~~L~~~~~~ 207 (310)
. +..... .........+........ ...++..+ ....++++.++..++.+.+.+.|. + ++
T Consensus 357 ~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~ 434 (533)
T 3f6t_A 357 LDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PK 434 (533)
T ss_dssp SCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CC
T ss_pred cCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-Cc
Confidence 0 000000 000000000000011111 00122333 235667788888899999999997 5 45
Q ss_pred EEecCCCceEE-EEEEcCCcchhhhhhhhccccchhHHHH-----HHHHHHHHHHHH-hcCcEEEEEeEEC-CEeEEEEE
Q 046506 208 EVVFPRHFAVV-CFRVSPSAVMDKLKTKYENSLLSEEERI-----NEFNRELLESIN-ASGKAYMTHAVLG-GIYAIRFA 279 (310)
Q Consensus 208 ~v~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~-~~g~~~~~~~~~~-~~~~iRis 279 (310)
.+. ++..+.. .+.+.... .. +...+.. .....++..++. +.|.+...+.... +.+.+|+|
T Consensus 435 ~~~-~~~~g~~~~~~l~~~~-~~----------~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls 502 (533)
T 3f6t_A 435 DET-DTNTHYYSLIDIYRLA-EK----------IYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVS 502 (533)
T ss_dssp CCS-TTBCCSEEEEEHHHHH-HH----------HHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEE
T ss_pred ccc-CCCceEEEEEehHhhh-hh----------ccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEE
Confidence 543 3444333 33332100 00 0000000 000123334443 4565433322222 35689999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 046506 280 AGATLTEERHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 280 ~~~~~~t~edi~~li~~l~~~~~~~~~~ 307 (310)
+.+ .++++++.++++|++++.++.+.
T Consensus 503 ~a~--~~~e~i~~~i~~L~~~l~~~~~~ 528 (533)
T 3f6t_A 503 QAN--LPTEDYALIGKQVLELLKEYYEE 528 (533)
T ss_dssp SSS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eee--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 753 57889999999999999877543
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-13 Score=127.80 Aligned_cols=224 Identities=10% Similarity=0.022 Sum_probs=133.2
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.++++|+++|++.. ..+.+|+++..++++|.+.| +++|+++|++||+++++|++|++.......+.-...++
T Consensus 216 ~~~~~le~~i~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~- 291 (449)
T 2cjg_A 216 EALRQARAAFETRP---HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV- 291 (449)
T ss_dssp HHHHHHHHHHHHST---TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-
T ss_pred HHHHHHHHHHHhcC---CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-
Confidence 56778999997421 12457777777788898777 99999999999999999999975432221110001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|++++ .|++ | +|++++++ +.. +.+. +.+...... ..++ ++-+....++.++++.+..
T Consensus 292 ~~di~t~--sK~l--~--iG~~~~~~-~~~-~~l~--~~~~~~~~~---------~~t~-~~n~~~~~aa~aal~~~~~- 350 (449)
T 2cjg_A 292 APDIVAF--GKKT--Q--VCGVMAGR-RVD-EVAD--NVFAVPSRL---------NSTW-GGNLTDMVRARRILEVIEA- 350 (449)
T ss_dssp CCSEEEE--CGGG--S--SEEEEECG-GGG-GSTT--CTTTSTTSS---------CCSS-SSCHHHHHHHHHHHHHHHH-
T ss_pred CceEEEe--cCcc--c--EEEEEECH-HHh-hhhh--hcccCCccc---------ccCC-CCCHHHHHHHHHHHHHHHh-
Confidence 3687765 5998 5 67777654 333 2110 001100000 0000 1111222333344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCC-eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGS----DKR-FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~----~~~-~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
+++.++..++.+++++.|.+ .|. +... .+..+++.+.+... ....++.+.
T Consensus 351 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~~~~~~~~~----------------------~~~~~~~~~ 405 (449)
T 2cjg_A 351 --EGLFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLMCAFSLPTT----------------------ADRDELIRQ 405 (449)
T ss_dssp --HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTEEEEECSSH----------------------HHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEEEEEEECCh----------------------HHHHHHHHH
Confidence 34667777888888888875 354 5433 23455666655431 112467777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|.++|. .+.+. +.+++|++++ ..+|++|++.++++|++.+..+
T Consensus 406 l~~~Gv-~v~~~---g~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 406 LWQRAV-IVLPA---GADTVRFRPP-LTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp HHHTTE-ECEEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCe-EEecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 777774 44432 3578999954 6799999999999999887653
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=132.28 Aligned_cols=221 Identities=12% Similarity=0.077 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc----cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITA----VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~----~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++. +.+|+++..++..|. ..++++|+++|++||+++++|++|.+.........-...++ .
T Consensus 190 d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~ 262 (420)
T 2pb2_A 190 DLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-T 262 (420)
T ss_dssp CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-C
T ss_pred CHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-C
Confidence 789999998743 456777766676675 36799999999999999999999964322221110001122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+++ .+|+++++..+|+++++++ .. +.+.. . ... .++ ++-+..+.++.++++.+..
T Consensus 263 ~diit--~sK~l~~G~~iG~~~~~~~-l~-~~l~~--~---~~~-----------~t~-~~~~~~~aa~~a~L~~~~~-- 319 (420)
T 2pb2_A 263 PDILT--SAKALGGGFPVSAMLTTQE-IA-SAFHV--G---SHG-----------STY-GGNPLACAVAGAAFDIINT-- 319 (420)
T ss_dssp CSEEE--ECGGGGTTSCCEEEEECHH-HH-TTCC---------C-----------CEE-CCCHHHHHHHHHHHHHHSS--
T ss_pred CCeEE--ecccccCCCceEEEEEhHH-HH-HhhcC--C---CcC-----------ccc-CcCHHHHHHHHHHHHHHHh--
Confidence 78775 5799996666898887644 32 22211 0 000 011 1111223344455554433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+++.++..++.+++.+.|+++ |.+... ++..+++.+.+.... .....++.+.|.
T Consensus 320 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~--------------------~~~~~~l~~~l~ 377 (420)
T 2pb2_A 320 -PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKY--------------------KGRARDFLYAGA 377 (420)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGG--------------------TTCHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCc--------------------hHHHHHHHHHHH
Confidence 456677778888888888654 433322 234566667664310 000135667777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.|. .+.+. +.+.+|++++ ..++++|+++++++|+++++++
T Consensus 378 ~~Gi-~v~~~---~~~~iRl~~~-~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 378 EAGV-MVLNA---GADVMRFAPS-LVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp HTTE-ECEES---STTEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCC-EEEeC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 7764 44332 3568999965 5789999999999999988765
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=127.10 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=118.8
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEec----cCCcccccCChHHHHHHHHH--hCcEEE
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATI----GTTAITAVDTLKPLCDVAKQ--FGIWVH 78 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~pl~~I~~l~~~--~g~~l~ 78 (310)
..|+. ++.+|. + ++.+|+++|+++|++.. .+.+|++.+ ++|++|.+.|+++|+++|++ +|++++
T Consensus 147 ~~G~~---~~~v~~-~--~~~~d~e~l~~~i~~~~----~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~li 216 (427)
T 3hvy_A 147 EYGVK---YKMVDL-K--DGKVDINTVKEELKKDD----SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVF 216 (427)
T ss_dssp GGTCE---EEECCC-B--TTBCCHHHHHHHHHHCT----TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEE
T ss_pred HcCCE---EEEecC-C--CCCcCHHHHHHHhhCCC----CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEE
Confidence 34665 788887 3 34899999999998411 256888888 88999999999999999999 899999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeeccccccc---ccceEEEEEeCchhHHhhhcc-CCccccccccccccccC
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFT---TLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVD 154 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~---p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~ 154 (310)
||++|+.+....... . .++|+++.|+||++++ |.| |+++. +++.+++.... ....+..
T Consensus 217 vD~a~~~~~~~~~p~---~---~gaDiv~~S~sK~lgg~g~~~G-G~i~~-~~~li~~l~~~~~~~~~g~---------- 278 (427)
T 3hvy_A 217 VDNCYGEFVEEKEPT---D---VGADIIAGSLIKNIGGGIATTG-GYIAG-KEEYVTQATFRVTVPGIGG---------- 278 (427)
T ss_dssp EECTTCTTTSSSCGG---G---GTCSEEEEETTSGGGTTTCCSC-EEEEE-CHHHHHHHHHHHSCTTTGG----------
T ss_pred EECCccccccCCCCc---c---cCCeEEEECCcccccccccceE-EEEEE-CHHHHHHHHHHhhcCCccc----------
Confidence 999998665322111 1 1589999999999987 433 55554 45444333210 1011100
Q ss_pred CCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-----EEEEEEcC
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-----VVCFRVSP 224 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~~~~~~ 224 (310)
..+-.+.. .+.+++ +......++++..++++++++.|+++ ++++... ... +++|.+..
T Consensus 279 ------~~~~~~~~--a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~l~~ 341 (427)
T 3hvy_A 279 ------ECGSTFGV--MRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIKFND 341 (427)
T ss_dssp ------GCCCCTTC--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEECSS
T ss_pred ------ccCCCHHH--HHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEeCCC
Confidence 01100111 233332 33455678889999999999999987 6777532 333 77777753
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-14 Score=126.46 Aligned_cols=228 Identities=9% Similarity=-0.037 Sum_probs=142.5
Q ss_pred ceecCCCCCCEEEEec-CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC-cEEEee
Q 046506 3 AQIVGIDVKNFRAIKT-TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG-IWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~-~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g-~~l~vD 80 (310)
++..|.. ++.+|. ++.+ .+++ +. +.+|++++++|++|.+.|+++|.++|+.++ .++++|
T Consensus 106 ~~~~g~~---~~~v~~~~~~~--~~~~--------~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~D 166 (350)
T 3fkd_A 106 CRMYEHE---VCFYPSNEDIG--EADF--------SN------MDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLD 166 (350)
T ss_dssp HHHTTCE---EEEEETTSCGG--GSCC--------TT------CSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEE
T ss_pred HHHcCCe---EEEEecCCccc--cCcc--------CC------CCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 3456666 899998 6533 4555 11 447788899999999999999999999876 799999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeeccccccc-ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFT-TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++|+.............. ....++++.|++|+++. ....|+++. ++............+
T Consensus 167 ea~~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~------------------ 226 (350)
T 3fkd_A 167 QSYVSFTTEEVIRPADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW------------------ 226 (350)
T ss_dssp CTTTTSCSSCCCCGGGGT-TCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT------------------
T ss_pred CchhhhccCcchhhHHhh-cCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCC------------------
Confidence 999754432211111111 12345788899999984 356787776 554443322211110
Q ss_pred eccCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGV-ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
....+..+++...+.. +.+.+..++..++++++.+.|+++|++++. ++..+.+.+.+...+
T Consensus 227 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~------------ 288 (350)
T 3fkd_A 227 -----AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKGT------------ 288 (350)
T ss_dssp -----CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSSC------------
T ss_pred -----CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCCC------------
Confidence 0122223333332211 113333444448889999999888899885 556667767776421
Q ss_pred cchhHHHHHHHHHHHHHHHHh-cCcEEEEEe-EEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINA-SGKAYMTHA-VLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..++.+.|.+ .|. .+.+. ... +.+++|+|+. +++++++++++|+++...
T Consensus 289 -----------~~~l~~~L~~~~gi-~v~~g~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 289 -----------AAELKKYMLEEYNM-LIRDASNFRGLDESYVRITTQ----RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -----------HHHHHHHHHHTTCE-ECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHTC
T ss_pred -----------HHHHHHHHHHHCCE-EEEeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHHH
Confidence 1467777877 664 44433 221 2579999943 688999999999988753
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=125.42 Aligned_cols=232 Identities=10% Similarity=-0.048 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++.. ...+.++++...++++|.+.| +++|+++|++||+++++|.+|++.............++ .
T Consensus 186 d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~ 262 (439)
T 3dxv_A 186 ILTLLTEKLAAVP--AGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-V 262 (439)
T ss_dssp HHHHHHHHHHTSC--TTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-C
T ss_pred HHHHHHHHHHhcC--CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-C
Confidence 7899999995210 112557777777888999988 99999999999999999999974322111111001122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|.+ +..|++++....|+++.++. .+ +.+... .+ . .++ ...++..+++..+....
T Consensus 263 ~di~--s~sK~~~~G~riG~~~~~~~-~~-~~~~~~-~~----~-----------~t~-----~~~~~~~aa~aal~~~~ 317 (439)
T 3dxv_A 263 PDIL--VLGKGLGGGLPLSAVIAPAE-IL-DCASAF-AM----Q-----------TLH-----GNPISAAAGLAVLETID 317 (439)
T ss_dssp CSEE--EECGGGGTTSCCEEEEEEHH-HH-TSCSSS-SC----C-----------TTT-----TCHHHHHHHHHHHHHHH
T ss_pred CCEE--EEcchhcCCcceEEEEECHH-HH-hhhcCC-Cc----C-----------CCc-----ccHHHHHHHHHHHHHHH
Confidence 6766 55699986445787776533 32 222110 00 0 001 12233333333221111
Q ss_pred HHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
.+++.++..++.+++++.|.+ .+.+... ++..+++.+.+...... ..+ + .....++.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~---------~~~-~----~~~~~~~~~~l~ 382 (439)
T 3dxv_A 318 RDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQS---------REP-A----RAETAKLIYRAY 382 (439)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTT---------TEE-C----HHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccc---------cCC-C----HHHHHHHHHHHH
Confidence 144556666666666666654 4555443 33455666665321000 000 0 122346677777
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
++|.+..... ....++|++++ ...++++++.++++|++++.++
T Consensus 383 ~~Gv~v~~~~--~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 383 QLGLVVYYVG--MNGNVLEFTPP-LTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHTEECEEES--TTSCEEEECCC-TTCCHHHHHHHHHHHHHHHHTG
T ss_pred HCCcEEeecC--CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 7875443321 22478999955 6789999999999999988765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-13 Score=125.60 Aligned_cols=220 Identities=14% Similarity=0.110 Sum_probs=128.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC-
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE- 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~- 101 (310)
|+++|+++|++....+..+.+|++....+++|.+.| +++|+++|++||+++|+|++|.+.........-...++.
T Consensus 241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~ 320 (472)
T 1ohv_A 241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD 320 (472)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCC
Confidence 789999999874321112567777777888999888 999999999999999999999743221110000011211
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.+|+++++ |++. |.|++ + ++. +.. ..+.+... + .++-+..+.++.++++.+..
T Consensus 321 ~~Di~t~s--K~~l---~GG~~-~-~~~-~~~---~~~~~~~~--------------T-~~~~~~~~aaa~aal~~~~~- 373 (472)
T 1ohv_A 321 PADVMTFS--KKMM---TGGFF-H-KEE-FRP---NAPYRIFN--------------T-WLGDPSKNLLLAEVINIIKR- 373 (472)
T ss_dssp CCSEEEEC--GGGS---SEEEE-E-CGG-GSC---SSSSSSCC--------------S-SSSCHHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEc--cccc---cCCcc-C-chh-hcc---cccccccC--------------c-cCccHHHHHHHHHHHHHHHh-
Confidence 27877665 9841 12444 4 332 210 11111100 0 01111222334455554422
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CC-eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD----KR-FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~----~~-~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
+.+.++..++.+++++.|.++ |+ +.-+ .+...++.+.+.. ......+.+.
T Consensus 374 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~----------------------~~~~~~~~~~ 428 (472)
T 1ohv_A 374 --EDLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPD----------------------ESIRNKLISI 428 (472)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSS----------------------HHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee-cCCceEEEEEeCC----------------------hhHHHHHHHH
Confidence 345677777888888887653 43 3322 1234455554432 1123467777
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
|.++|. .+.+. +.++||++++ +.+|++||+.++++|++++.+
T Consensus 429 l~~~Gv-~~~~~---g~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 429 ARNKGV-MLGGC---GDKSIRFRPT-LVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHTTE-ECEEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCe-EEecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 777775 43332 3468999955 679999999999999988754
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.8e-13 Score=122.97 Aligned_cols=235 Identities=14% Similarity=0.075 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+++|+++|++... ..+.+|+++..++++|.+.| +++|+++|++||+++++|++|++.........-...++ ..
T Consensus 205 ~~~le~~l~~~~~--~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~ 281 (449)
T 3a8u_X 205 ADELLKLIELHDA--SNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGV-TP 281 (449)
T ss_dssp HHHHHHHHHHHCG--GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CC
T ss_pred HHHHHHHHHhcCC--CCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCC-CC
Confidence 9999999975310 01456666666677898888 99999999999999999999953322111101001122 36
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhCHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA 181 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 181 (310)
|++ +.+|++++. ...|++++++ +..........+ .... .+ ......+.. ..+.++.++++.+..
T Consensus 282 di~--s~sK~l~~G~~~~G~~~~~~-~~~~~l~~~~~~---~~~~------~~-~~~~t~~~~~~~~aa~~aal~~~~~- 347 (449)
T 3a8u_X 282 DLM--CIAKQVTNGAIPMGAVIAST-EIYQTFMNQPTP---EYAV------EF-PHGYTYSAHPVACAAGLAALCLLQK- 347 (449)
T ss_dssp SEE--EECGGGGTTSSCCEEEEEEH-HHHHHHHTCSSC---TTSC------SS-CCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred CEE--EEcccccCCCCceEEEEECH-HHHHHhhccCcc---cccc------cc-cccCCCcccHHHHHHHHHHHHHHHh-
Confidence 766 445998752 2288887764 343322111000 0000 00 000000111 122233344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+++.++..++.+++++.|.+++++.++. ++..+++.+.+..... .. .....++.+.|.+
T Consensus 348 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--------------~~---~~~~~~~~~~l~~ 408 (449)
T 3a8u_X 348 --ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDG--------------DA---IVRPFEAGMALWK 408 (449)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTT--------------BS---SHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcc--------------cc---cccHHHHHHHHHH
Confidence 3567778888889999887643232111 2345667777654210 00 0001246677777
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+|. .+.+. + +.+|++++ ..++++|+++++++|++++.++
T Consensus 409 ~Gv-~v~~~---g-~~iRis~~-~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 409 AGF-YVRFG---G-DTLQFGPT-FNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp HTE-ECEEE---T-TEEEECCC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCc-EEecC---C-CEEEEECC-CcCCHHHHHHHHHHHHHHHHHH
Confidence 764 44433 3 78999965 5799999999999999987653
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-12 Score=123.35 Aligned_cols=237 Identities=11% Similarity=0.012 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhh-hcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~-~~~~~~ 102 (310)
+++||++|.+... ..+.+|++....++.|.+.| +++|+++|++||++|++|.+|.+.......+.-. ..++ .
T Consensus 207 ~~~le~~i~~~~~--~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~ 283 (476)
T 3i5t_A 207 VQEFEDRIESLGP--DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-V 283 (476)
T ss_dssp HHHHHHHHHHHCG--GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-C
T ss_pred HHHHHHHHHhcCC--CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-C
Confidence 7899999975311 12457777777788887666 9999999999999999999997653332211111 1222 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCC----ccccccccccccccCCCCceeccCCCcchHHHHHHHHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNP----EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRN 177 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (310)
.|+++++ |++++. ...|+++.+ ++.. +.+.... .+.. ..+.....+++.+++..
T Consensus 284 pdi~t~s--K~l~~G~~plg~v~~~-~~i~-~~~~~~~~~~~~~~~-----------------~~t~~~np~a~aAa~aa 342 (476)
T 3i5t_A 284 PDIITFA--KGVTSGYVPLGGLAIS-EAVL-ARISGENAKGSWFTN-----------------GYTYSNQPVACAAALAN 342 (476)
T ss_dssp CSEEEEC--GGGGTTSSCCEEEEEC-HHHH-HTTSGGGCTTCEECC-----------------CCTTTTCHHHHHHHHHH
T ss_pred cchhhhh--hhhcCCCcCeEEEEEC-HHHH-HHHhcCCcccccccc-----------------cCCCCcCHHHHHHHHHH
Confidence 6877664 998865 456777664 4333 3322110 0000 00011123333333333
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHH
Q 046506 178 YGVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELL 254 (310)
Q Consensus 178 ~~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (310)
+..-.-+++.++..++.+++++.|+++ |.+..+ .+...++.+.+...... ..+.. ........+.
T Consensus 343 L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~~G~~~~i~~~~~~~~---------~~~~~--~~~~~~~~~~ 410 (476)
T 3i5t_A 343 IELMEREGIVDQAREMADYFAAALASLRDLPGVAET-RSVGLVGCVQCLLDPTR---------ADGTA--EDKAFTLKID 410 (476)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE-EEETTEEEEEECCC--------------CCH--HHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceeEEEEecCccc---------ccccc--chhHHHHHHH
Confidence 311112456777778888888888754 344333 23344566666542100 00000 0012345677
Q ss_pred HHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 255 ESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 255 ~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+.+.++|.+ +.+. + +++|++++ ...|+++++.++++|++.+.++.+
T Consensus 411 ~~l~~~Gv~-v~~~---g-~~iRi~p~-l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 411 ERCFELGLI-VRPL---G-DLCVISPP-LIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp HHHHHTTEE-CEEE---T-TEEEECCC-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCE-EEec---C-CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 788888754 3332 3 78999955 678999999999999999987654
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=125.48 Aligned_cols=242 Identities=10% Similarity=0.024 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+++||++|.+... ..+.+|++...+++.|.+.| +++|+++|++||++|++|.+|.+.............++ ..
T Consensus 207 ~~~le~~i~~~~~--~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~p 283 (460)
T 3gju_A 207 ADKLEEMILAEGP--ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KP 283 (460)
T ss_dssp HHHHHHHHHHHCG--GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CC
T ss_pred HHHHHHHHHhcCC--CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CC
Confidence 6899999975211 12457777777788888776 99999999999999999999975433221111001122 36
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccC----CccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTN----PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
|++++ .|++++. ...|+++.+++ .. +.+... ..+.... ++ ++-+..+.+..++++.+
T Consensus 284 di~t~--sK~l~gG~~~lg~v~~~~~-i~-~~~~~~~~~~~~~~~~~-------------t~-~~~~~~~aaa~aal~~~ 345 (460)
T 3gju_A 284 DLITI--AKGLTSAYAPLSGVIVADR-VW-QVLVQGSDKLGSLGHGW-------------TY-SAHPICVAAGVANLELI 345 (460)
T ss_dssp SEEEE--CGGGTTTSSCCEEEEEEHH-HH-HHHHHHHHHHCSCSCCC-------------TT-TTCHHHHHHHHHHHHHH
T ss_pred Ceeee--ehhhcCCCCCeEEEEECHH-HH-HHHhcccccccccccCC-------------CC-CCCHHHHHHHHHHHHHH
Confidence 77765 4998774 35677776544 33 222100 0000000 00 00011223333444433
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 179 GVAN-LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 179 ~~~~-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
..+. +++..+....+.+.+.+.+.+.|.+..+ .+...++.+.+...... ..+.... .....++.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~l 413 (460)
T 3gju_A 346 DEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV-RGDGMLAAVEFVADKDD---------RVFFDAS--QKIGPQVATAL 413 (460)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTT---------TBCCCGG--GCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-eeeeEEEEEEEccCccc---------cccccch--HHHHHHHHHHH
Confidence 2222 3333333334444455555566655544 23345666666532100 0000000 11234677778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.++|.+. .+.. ..+++||+++ ...|+++++.++++|++.+.++.+
T Consensus 414 ~~~Gv~v-~~~~--~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 414 AASGVIG-RAMP--QGDILGFAPP-LCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HHTTEEC-EECS--SSCEEEECCC-TTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCeEE-ecCC--CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8888543 3321 3478999955 578999999999999999887653
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-14 Score=127.73 Aligned_cols=224 Identities=12% Similarity=0.056 Sum_probs=132.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccc-----cCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITA-----VDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 100 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~-----~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~ 100 (310)
.|+++|+++|++. +.+|+++ +.+.+|. ..++++|+++|++||+++++|++|++.............++
T Consensus 171 ~d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 243 (406)
T 4adb_A 171 NDINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV 243 (406)
T ss_dssp TCHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC
T ss_pred CcHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC
Confidence 4789999998643 4566666 5555554 34699999999999999999999974322221111011122
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|++++ +|++++...+|+++.+ ++.. +.+.. ..... ++ ..-.....++.++++.+..
T Consensus 244 -~~d~~t~--sK~~~~G~r~G~~~~~-~~~~-~~~~~---~~~~~-------------~~-~~~~~~~~a~~~~l~~~~~ 301 (406)
T 4adb_A 244 -TPDLLTT--AKALGGGFPVGALLAT-EECA-RVMTV---GTHGT-------------TY-GGNPLASAVAGKVLELINT 301 (406)
T ss_dssp -CCSEEEE--CGGGGTTSCCEEEEEC-HHHH-HTCCT---TSSCC-------------SS-TTCHHHHHHHHHHHHHHSS
T ss_pred -CCCEEEe--chhhcCCCCeEEEEEc-HHHH-hhhcc---CCcCC-------------CC-CCCHHHHHHHHHHHHHHHh
Confidence 3677754 9999844458887664 4333 22211 00000 00 0001122333344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDK-RFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
++..++..++++++.+.|+++. .+.+.. .....++.+.+.... .....++.+.+
T Consensus 302 ---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~~~~~l 358 (406)
T 4adb_A 302 ---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADY--------------------AGQAKQISQEA 358 (406)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTT--------------------TTCHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCc--------------------HHHHHHHHHHH
Confidence 5677777788888888887641 111111 113456666665420 00124677778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.++|. .+.+ .+.+.+|++++ ..++++|+++++++|++++.++.+
T Consensus 359 ~~~gi-~v~~---~~~~~iRi~~~-~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 359 AKAGV-MVLI---AGGNVVRFAPA-LNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp HHTTE-ECEE---SSTTEEEECCC-TTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCc-EEee---cCCCeEEEECC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 78874 4433 24678999855 679999999999999999987754
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=126.27 Aligned_cols=220 Identities=9% Similarity=-0.024 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC----ChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD----TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~----pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|... .+.+|+++...+++|.+. ++++|+++|++||+++++|++|.+.........-...++ .
T Consensus 211 d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~ 284 (439)
T 2oat_A 211 DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-R 284 (439)
T ss_dssp CHHHHHHHTTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred CHHHHHHHhCCC-----CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCC-C
Confidence 789999999521 145666666667789766 799999999999999999999954322121111001122 3
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++ +.+|++++. ...|+++++++ .. +.+.. .. .. .++ ++-+..+.++.++++.+..
T Consensus 285 ~Di~--t~sK~l~~G~~~~G~v~~~~~-~~-~~l~~--~~---~~-----------~t~-~~~~~~~aaa~aal~~~~~- 342 (439)
T 2oat_A 285 PDIV--LLGKALSGGLYPVSAVLCDDD-IM-LTIKP--GE---HG-----------STY-GGNPLGCRVAIAALEVLEE- 342 (439)
T ss_dssp CSEE--EECGGGGTTSSCCEEEEECHH-HH-TTSCT--TS---SC-----------CSS-TTCHHHHHHHHHHHHHHHH-
T ss_pred CcEE--EecccccCCCCCeEEEEECHH-HH-hccCC--CC---cc-----------cCC-CcCHHHHHHHHHHHHHHhh-
Confidence 6876 567998864 34888877643 33 22211 00 00 011 1111222333444544422
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
++..++..++.+++++.|+++ ++.++. ++..+++.+.+.... . ....++.+.|.+
T Consensus 343 --~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~---------------~-----~~~~~l~~~l~~ 399 (439)
T 2oat_A 343 --ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK---------------D-----WDAWKVCLRLRD 399 (439)
T ss_dssp --TTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS---------------S-----CCHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc---------------c-----HHHHHHHHHHHH
Confidence 356788888999999999876 332211 234456667665420 0 001356777777
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+|. .+.+ .+..++|++++ ..+|++|+++++++|++.+.
T Consensus 400 ~Gv-~v~~---~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 400 NGL-LAKP---THGDIIRFAPP-LVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp TTE-ECCB---SSSSEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CCe-EEec---CCCCEEEEECc-cCCCHHHHHHHHHHHHHHHH
Confidence 764 4433 24578999955 57899999999999998765
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=121.41 Aligned_cols=232 Identities=9% Similarity=0.007 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
+++||++|++... ..+.++++... .| +|.+.| +++|+++|++||+++++|.+|.+.............++ .
T Consensus 201 ~~~le~~l~~~~~--~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~ 276 (452)
T 3n5m_A 201 VKEVDRVMTWELS--ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-K 276 (452)
T ss_dssp HHHHHHHHHHHCG--GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-C
T ss_pred HHHHHHHHHhcCC--CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-C
Confidence 8999999973111 12456677666 68 998887 99999999999999999999875433221111001122 2
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhcc---CCccccccccccccccCCCCceeccCCCcchHHHH---HHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLST---NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLW---FVL 175 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 175 (310)
.|++++ .|.+++. ...|+++.+++ .. +.+.. ...++.. .+.....++.. +++
T Consensus 277 ~di~t~--sK~l~~G~~~ig~~~~~~~-i~-~~~~~~~~~~~~~~~-----------------~t~~~~~~~~aaa~aal 335 (452)
T 3n5m_A 277 PDIITM--AKGITSAYLPLSATAVKRE-IY-EAFKGKGEYEFFRHI-----------------NTFGGNPAACALALKNL 335 (452)
T ss_dssp CSEEEE--CGGGGTTSSCCEEEEEEHH-HH-GGGCSSSTTCSCCCC-----------------CSSTTCHHHHHHHHHHH
T ss_pred CCEEee--cccccCCCcceEEEEECHH-HH-HHHhhccCCCCcccc-----------------CCCCCCHHHHHHHHHHH
Confidence 677665 5888765 56788776543 33 33321 0111100 00111233333 344
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHc----CCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHH
Q 046506 176 RNYGVANLRHFLRSHVNMAKLFERLVG----SDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNR 251 (310)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
+.+.. ++..++..++.+++++.|. ++|.+..+ .+...++.+.+...... ..+.+ .....
T Consensus 336 ~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~---------~~~~~----~~~~~ 398 (452)
T 3n5m_A 336 EIIEN---ENLIERSAQMGSLLLEQLKEEIGEHPLVGDI-RGKGLLVGIELVNDKET---------KEPID----NDKIA 398 (452)
T ss_dssp HHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EESSSCEEEEEEEETTT---------TEECC----HHHHH
T ss_pred HHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCCcc---------cCCCC----HHHHH
Confidence 43322 3445555555556655554 44555443 23344455554321000 00000 11224
Q ss_pred HHHHHHHhcCcEEEEEe--EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 252 ELLESINASGKAYMTHA--VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 252 ~l~~~l~~~g~~~~~~~--~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
++.+.+.++|.+..... .....+++||+++ ...|+++++.++++|++++.
T Consensus 399 ~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 399 SVVNACKEKGLIIGRNGMTTAGYNNILTLAPP-LVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp HHHHHHHHTTEECEECTTSSTTCCCEEEECCC-TTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCcEEeecCcccCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 57777888885443321 0112579999955 57899999999999998764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-13 Score=124.76 Aligned_cols=236 Identities=10% Similarity=-0.025 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+++|+++|++... ..+.+|++....++.|.+.| +++|+++|++||++|++|.+|.++........-...++ ..
T Consensus 209 ~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v-~p 285 (472)
T 3hmu_A 209 ARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI-RP 285 (472)
T ss_dssp HHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CC
T ss_pred HHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC-CC
Confidence 7889999975311 12457777777788898888 99999999999999999999976533321111001222 37
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|+++++ |++++. ...|+++.+++ .. +.+.. ..+.... ++ ++-+..+.+..++++.+..
T Consensus 286 di~t~s--K~l~gg~~plG~v~~~~~-i~-~~~~~-~~~~~~~-------------t~-~~np~a~aAa~aaL~~~~~-- 344 (472)
T 3hmu_A 286 HIMTIA--KGLSSGYAPIGGSIVCDE-VA-HVIGK-DEFNHGY-------------TY-SGHPVAAAVALENLRILEE-- 344 (472)
T ss_dssp SEEEEC--GGGTTTSSCCEEEEEEHH-HH-HHHTT-SCBCCCC-------------TT-TTCHHHHHHHHHHHHHHHH--
T ss_pred ceeeec--hhhhcCCcceEEEEECHH-HH-Hhccc-CCccccC-------------CC-CCCHHHHHHHHHHHHHHHH--
Confidence 887765 998765 35677776543 33 33311 1111000 00 0001122333344443322
Q ss_pred HHHHHHHHH-HHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHV-NMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~-~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+++.++.. ++.+++++.|+++ |.+..+ .+...++.+.+...... ..+.+.. .......+.+.+.
T Consensus 345 -~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~~~~~~~~---------~~~~~~~-~~~~~~~~~~~l~ 412 (472)
T 3hmu_A 345 -ENILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMASIALTPNKAS---------RAKFASE-PGTIGYICRERCF 412 (472)
T ss_dssp -TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEEEEEECSCGGG---------TCCBSSC-TTHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceEEEEEecCccc---------cccccch-hHHHHHHHHHHHH
Confidence 35566666 6777777777554 444433 23445666666542100 0000000 0112356777788
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
++|.+.... + +++||+++ ...|++|+++++++|++.+.++.
T Consensus 413 ~~Gv~v~~~----g-~~iRi~p~-~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 413 ANNLIMRHV----G-DRMIISPP-LVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HTTBCCEEE----T-TEEEECCC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCcEEEec----C-CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888654432 2 79999955 67999999999999998886653
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=132.81 Aligned_cols=237 Identities=11% Similarity=0.083 Sum_probs=138.1
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+++.+|+++|++++++.. ..+.++++.+++|++|.+.+ +++|+++|++||+++++|
T Consensus 139 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 212 (397)
T 3fsl_A 139 AGAGFE---VSTYPWYDEATNGVRFNDLLATLKTLQ---AGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLD 212 (397)
T ss_dssp HHTTCC---EEEECCEETTTTEECHHHHHHHHTTCC---TTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCc---eEEEeeeeccCCcCcHHHHHHHHHhCC---CCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEe
Confidence 445666 899998322246899999999997421 12457777888999999855 569999999999999999
Q ss_pred cccccccccCh----hhhhhhcCCCCCCeeeeecccccccc-cceEEEEE--eCchhHHhhhccCCcccccccccccccc
Q 046506 81 AAYAGSACICP----EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWV--KDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 81 ~a~~~~~~~~~----~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v--~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
.+|+.+..... ...... ....-.++..|.+|.++.| ..+|++++ .++..+.+.......+.....
T Consensus 213 e~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 284 (397)
T 3fsl_A 213 IAYQGFGAGMEEDAYAIRAIA-SAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNY------- 284 (397)
T ss_dssp ESCTTSSSCTTGGGHHHHHHH-HTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTT-------
T ss_pred cCchhhccCcccccHHHHHHH-hcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhcc-------
Confidence 99976554311 111111 1123456778999998743 34777765 333333222110000000000
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEE
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYG--------VANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRV 222 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~ 222 (310)
.. ...+...++...+. .+.++++.++..++.+++.+.|.+++ ++.+..+ ..+.+.+ +
T Consensus 285 -------~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~-~ 352 (397)
T 3fsl_A 285 -------SS---PPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN-QRGMFSY-T 352 (397)
T ss_dssp -------SS---CCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHH-CCSSEEE-C
T ss_pred -------CC---CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecC-CceEEEe-c
Confidence 00 01111122222221 34567888888999999999998764 5655433 3333322 1
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
... . ..+...+.+.| +++.+. . |+|+.. .++++|+.++++|+++
T Consensus 353 -~~~--------------------~---~~~~~~l~~~g-i~v~~g----~---Ris~~~--~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 353 -GLS--------------------A---AQVDRLREEFG-VYLIAS----G---RMCVAG--LNTANVQRVAKAFAAV 396 (397)
T ss_dssp -CCC--------------------H---HHHHHHHHTTC-EECCTT----C---EEEGGG--CCTTTHHHHHHHHHHH
T ss_pred -CCC--------------------H---HHHHHHHHhCC-EEECCC----C---eEEEEe--cCHhhHHHHHHHHHhh
Confidence 110 1 23444555565 444432 1 999763 3557799999999875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=121.56 Aligned_cols=241 Identities=10% Similarity=-0.020 Sum_probs=129.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCC-cccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhc-
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTT-AITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID- 98 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~-~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~- 98 (310)
..|+++||++|++... ..+.+++++..++ ++|.+.+ +++|+++|++||+++++|.+|...............
T Consensus 173 ~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~ 250 (430)
T 3i4j_A 173 AEDAEGLRALLEREGP--ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWS 250 (430)
T ss_dssp HHHHTHHHHHHHHHCG--GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred hHHHHHHHHHHHhcCC--CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhc
Confidence 3577999999975310 1245666666667 8898877 999999999999999999999754322211110011
Q ss_pred CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHH
Q 046506 99 GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRN 177 (310)
Q Consensus 99 ~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (310)
++ ..|.+++ .|++++. ...|+++. +++..+........+.... ++ .+-+..+.++.++++.
T Consensus 251 ~~-~~di~t~--sK~l~~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~-------------t~-~~~~~~~aaa~aal~~ 312 (430)
T 3i4j_A 251 GV-TPDIAVL--GKGLAAGYAPLAGLLA-APQVYETVMGGSGAFMHGF-------------TY-AGHPVSVAAGLSVLDI 312 (430)
T ss_dssp TC-CCSEEEE--CGGGTTTSSCCEEEEE-CHHHHHHHHHTTCBCCCCC-------------TT-TTCHHHHHHHHHHHHH
T ss_pred CC-CCcEEEE--cccccCCccccEEEEE-CHHHHHHHhccCCcccccC-------------CC-CCCHHHHHHHHHHHHH
Confidence 22 2566655 5998853 33677766 4444322211110111100 00 0001122233334443
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHc----CCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHH-HHHHHH
Q 046506 178 YGVANLRHFLRSHVNMAKLFERLVG----SDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI-NEFNRE 252 (310)
Q Consensus 178 ~~~~~~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (310)
+.. +++.++..++.+++++.|. ++|++..+ ++..+++.+.+.+... ..... .....+
T Consensus 313 ~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~ 374 (430)
T 3i4j_A 313 VER---EDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLAT--------------GQAFETPGIASR 374 (430)
T ss_dssp HHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC--------------------------CHHH
T ss_pred HHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccc--------------cCCCccHHHHHH
Confidence 322 3344555555555555554 45666554 3345566666643110 00000 011246
Q ss_pred HHHHHHhcCcEEEEEe-E--ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 253 LLESINASGKAYMTHA-V--LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 253 l~~~l~~~g~~~~~~~-~--~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.+.+.++|.+..... . ..+...+|++++ ...++++++.++++|+++++++
T Consensus 375 ~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 375 IGAAALKRGLITYPGSGAEPNGRGDHLLLGPP-LSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHTTEECC-----------CEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEecccccCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 7777888885443321 1 123578999955 5689999999999999988765
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=124.92 Aligned_cols=236 Identities=11% Similarity=0.010 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++... .+.++++...++++|.+.| +++|.++|++||++|++|++|.++ .......-...++ .
T Consensus 188 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~ 262 (434)
T 3l44_A 188 NVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-T 262 (434)
T ss_dssp CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-C
T ss_pred cHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCC-C
Confidence 89999999986421 2456777777777898888 999999999999999999999754 2221110001122 2
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.++++...|+++. +++.+ +.+.. .+.+..... .+-+..+.+..++++.+..
T Consensus 263 ~di~t~--sK~~~~G~~iG~~~~-~~~i~-~~~~~~~~~~~~~t~---------------~~~~~a~aaa~aal~~~~~- 322 (434)
T 3l44_A 263 PDLTAL--GKVIGGGLPIGAYGG-KKEIM-EQVAPLGPAYQAGTM---------------AGNPASMASGIACLEVLQQ- 322 (434)
T ss_dssp CSEEEE--EGGGGTTSSCEEEEE-CHHHH-TTBTTTSSBCCCCTT---------------TTCHHHHHHHHHHHHHHTS-
T ss_pred CCeeeh--hhhhcCCcCeeeEEE-cHHHH-HhhccCCCcccCCCC---------------CcCHHHHHHHHHHHHHHHc-
Confidence 676655 599987777888855 44343 22211 001111000 0001122333344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGS----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+++.++..++.+++++.|.+ .+.+... ++..+++.+.+......+.-. .. .+ + .....++.+.|
T Consensus 323 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~-~~---~~-~----~~~~~~~~~~l 390 (434)
T 3l44_A 323 --EGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVYFTTNTIEDYDA-AQ---DT-D----GEMFGKFFKLM 390 (434)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEEESSSCCCSHHH-HH---HS-C----HHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEEEecCcccchhh-cc---cc-C----HHHHHHHHHHH
Confidence 34556666666666666654 3322222 234556667664321100000 00 00 0 12234677778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.++|. .+.+. +...+|++ ..+|++|+++++++|++++.++.+
T Consensus 391 ~~~Gv-~v~~~---~~~~~rl~---~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 391 LQEGV-NLAPS---KYEAWFLT---TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHTTE-ECCSS---TTCCEECC---TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCe-EEeec---CCCcEEEe---cccCHHHHHHHHHHHHHHHHHHHh
Confidence 78874 33322 23467875 357999999999999999987754
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=119.91 Aligned_cols=247 Identities=9% Similarity=0.033 Sum_probs=150.4
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhh
Q 046506 15 AIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR 94 (310)
Q Consensus 15 ~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~ 94 (310)
..++|+. ++.||.|.+++...+.+ |.+|++-. + ..-...|+++++++|++.|+.|++|.||-+|.+....+.
T Consensus 180 ~Y~vd~~-t~~IDyd~~~~~A~~~k-----PklIi~G~-S-aY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p 251 (490)
T 3ou5_A 180 PYKLNPK-TGLIDYNQLALTARLFR-----PRLIIAGT-S-AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp CBCEETT-TTEECHHHHHHHHHHHC-----CSEEEECC-S-SCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred ccccCCC-CCcccHHHHHHHHhhcC-----CCeEEECC-c-cCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence 3455653 46899999999998863 76665533 2 334457899999999999999999999987766554433
Q ss_pred hhhcCCCCCCeeeeecccccccccceEEEEEeCchh-HHhhhccCCccccccccccccccCC-CCceeccCCCcch-HHH
Q 046506 95 HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVDY-KDWQITLSRRFRS-LKL 171 (310)
Q Consensus 95 ~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 171 (310)
.. +.++|+++.+.||+|.+|.| |+++.++... ..........|-... -++. ..-.+|++-.... ++.
T Consensus 252 sP---~~~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~~~~~~~~~k------kin~aVFPg~qggp~~h~IAAk 321 (490)
T 3ou5_A 252 SP---FKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFED------RINFAVFPSLQGGPHNHAIAAV 321 (490)
T ss_dssp CG---GGTCSEEEEESSSTTCSCSC-EEEEEECSEEEECC--CCEEECCCHH------HHHHHHTTTTCSSCCHHHHHHH
T ss_pred Cc---cccceEEeccccccccCCCc-eEEEeccccccccccccchhHHHHHH------HHHhhcCccccccchHHHHHHH
Confidence 22 23699999999999999974 5666665310 000000000000000 0000 0002234433333 333
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 172 WFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
+.++.......+.+..++..++|+.|.+.|.+. |+++++. .+..++.+.+.+..+. .
T Consensus 322 AVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g~t------------------G--- 379 (490)
T 3ou5_A 322 AVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLD------------------G--- 379 (490)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCC------------------H---
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEeccccCCC------------------H---
Confidence 334444345677889999999999999999986 9999863 5677787877664321 1
Q ss_pred HHHHHHHHhcCcEEEEEe-EE-----CCEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHA-VL-----GGIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~-~~-----~~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
.+..+.|.+.|+ .+.-. .+ .....||+... .....++|++.+-+-|.+.+.
T Consensus 380 ~~ae~~Le~agI-tvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 380 ARAERVLELVSI-TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHTTE-ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-EECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 233444545553 33321 11 12457999733 234667888888887776553
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=125.79 Aligned_cols=238 Identities=8% Similarity=-0.030 Sum_probs=140.6
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEec-cCCcccccCC----hHHHHHHHHHhCcEEEeeccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATI-GTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSA 87 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~-~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~ 87 (310)
+..+|....+....|+++|+++|++... .+.+|++.. .++++|.+.| +++|+++|++||++|++|+++.+..
T Consensus 205 ~~~~~~p~~~~~~~d~~~le~~l~~~~~---~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g 281 (457)
T 3tfu_A 205 QVFAPQVPRDYDPAYSAAFEAQLAQHAG---ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFG 281 (457)
T ss_dssp CEEECCCCSSCCHHHHHHHHHHHHHHGG---GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ceEecCCCcccCHHHHHHHHHHHHhCCC---CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCc
Confidence 4444543322223688999999985321 245677776 6788898876 9999999999999999999987543
Q ss_pred ccChhhhhhhcCCCCCCeeeeeccccccccc-ceEEEEEeCchhHHhhhcc-CCc-cccccccccccccCCCCceeccCC
Q 046506 88 CICPEFRHFIDGVEGADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLST-NPE-YLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~-~~~-y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.......-...++ ..|++++ .|.+++.+ ..|+++.+++ .. +.+.. .+. +.... ++ ++-
T Consensus 282 r~G~~~a~~~~~~-~pdiit~--sK~l~gG~~~lG~v~~~~~-i~-~~~~~~~~~~~~~~~-------------t~-~~n 342 (457)
T 3tfu_A 282 RTGALFAADHAGV-SPDIMCV--GKALTGGYLSLAATLCTAD-VA-HTISAGAAGALMHGP-------------TF-MAN 342 (457)
T ss_dssp TTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH-HH-HHHHHSSSCSCCCCC-------------TT-TTC
T ss_pred cccchhHhHhcCC-CceEEEE--ChhhhCCCcceEEEEEcHH-HH-HHhhccCCCceeEec-------------CC-CcC
Confidence 2221111001122 3677744 69888753 5787776644 33 33211 111 11000 00 010
Q ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 165 RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
+..+.+..++++.+.. +.+.++..++.+++++.|.++ |++..+ .....++.+.+....
T Consensus 343 ~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~--------------- 403 (457)
T 3tfu_A 343 PLACAVSVASVELLLG---QDWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPV--------------- 403 (457)
T ss_dssp HHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCC---------------
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcc---------------
Confidence 1122233334443322 355677777888888888764 455433 224556666665421
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+ ..++.+.+.++|. .+.+. ...+|++++ ...|++|+++++++|++++.++
T Consensus 404 ~-------~~~~~~~l~~~Gv-~v~~~----~~~lRi~p~-~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 404 D-------LAVATPAALDRGV-WLRPF----RNLVYAMPP-YICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp C-------HHHHHHHHHHTTE-ECCCB----TTEEEECCC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred c-------HHHHHHHHHHCCe-EEEec----CCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 0 1356777878874 43332 358999855 5689999999999999988765
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=122.93 Aligned_cols=220 Identities=10% Similarity=0.015 Sum_probs=139.5
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+|.++ .+.+|+++| + .+.+|++.+++|++|.+.|.+++.++++..| ++++|++|
T Consensus 114 ~~~g~~---~~~v~~~~--~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~ 176 (335)
T 1uu1_A 114 KAVGAK---FLEVPLTK--DLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAY 176 (335)
T ss_dssp HHHTCE---EEECCCCT--TSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTT
T ss_pred HHcCCe---EEEeccCC--CCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcc
Confidence 345665 88888875 357888877 1 1457777888999999999999999999999 99999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
+.+... +.. .... ....+++..|++|+++.| ..+|++++ +++...........| .
T Consensus 177 ~~~~~~-~~~-~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~----~---------------- 232 (335)
T 1uu1_A 177 YEFHGE-SYV-DFLK-KYENLAVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPF----N---------------- 232 (335)
T ss_dssp HHHHCC-CCG-GGGG-TCSSEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHSCTT----C----------------
T ss_pred hhhcch-hHH-HHhh-hCCCEEEEecchhhcCCcccCeEEEEe-CHHHHHHHHHhcCCC----C----------------
Confidence 754321 101 1111 123578889999998744 23788887 444433221111111 0
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchh
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSE 242 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
.-......+.++++. .+.++++.++..++.+++.+.|+++ ++++. ++..+++.+.+...
T Consensus 233 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~----------------- 291 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKE----------------- 291 (335)
T ss_dssp SCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTH-----------------
T ss_pred cCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCC-----------------
Confidence 000112222333332 3467888888999999999999876 66654 44556666554320
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 243 EERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 243 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
...++.+.|.++|. .+.+ ..+++|+|+. +++|+++++++|+++
T Consensus 292 ------~~~~~~~~l~~~gi-~v~~----~~~~iRis~~----~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 292 ------EKERLLEHLRTKNV-AVRS----FREGVRITIG----KREENDMILRELEVF 334 (335)
T ss_dssp ------HHHHHHHHHHHHTE-EEEE----ETTEEEEECC----CHHHHHHHHHHHHCC
T ss_pred ------CHHHHHHHHHHCCE-EEEE----CCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence 01356677777764 4444 2458999953 367899999998753
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=131.92 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=140.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|..+.+++.+|+++|+++|++.. ..+.++++..++|++|.+.+ +++|+++|++||+++++
T Consensus 160 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 160 FDMAGFE---VVAYPYYDAKTNGVNFDGMLAALNGYE---PGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp HHHTTCC---EEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCe---EEEeeeeccccCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 3456776 999998322246899999999997421 12457888899999999855 66899999999999999
Q ss_pred ecccccccccCh----hhhhhhcCCCCCCeeeeecccccccc-cceEEEEE-e-CchhHHhhhccCCccccccccccccc
Q 046506 80 DAAYAGSACICP----EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWV-K-DPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 80 D~a~~~~~~~~~----~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v-~-~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
|.+++......+ ..... .+...-++++.|++|.++.| ..+|++++ . ++..+.+.............
T Consensus 234 De~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 306 (420)
T 4f4e_A 234 DIAYQGFGESIEADAAAVRLF-AAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNY------ 306 (420)
T ss_dssp EESCTTSSSCTTGGGHHHHHH-HHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTT------
T ss_pred ccccccccCCcchhhHHHHHH-HhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhccc------
Confidence 999976554321 11111 11223567889999998743 34787764 2 33332221100000000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcC
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYG-----VANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSP 224 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~ 224 (310)
.+.-...+..+...+.... .+.++++.++..++.+++.+.|+++ +++.+..+ ..+.+.| ..
T Consensus 307 --------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~--~~ 375 (420)
T 4f4e_A 307 --------SNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA-QRGMFSY--SG 375 (420)
T ss_dssp --------SSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-SCSSEEE--CC
T ss_pred --------CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC-CccEEEE--eC
Confidence 0000011122222222111 3446778888899999999999876 35655433 3333333 11
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.. . +.+...+.+.| +++.+. .|+|+.. .++++|+.++++|++++
T Consensus 376 ~~--------------------~---~~~~~~l~~~g-I~v~~~-------~Ris~~~--~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 376 LT--------------------S---AQVDRLREEFG-IYAVST-------GRICVAA--LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CC--------------------H---HHHHHHHHHHC-EECCTT-------SEEEGGG--CCTTTHHHHHHHHHHHH
T ss_pred CC--------------------H---HHHHHHHHhCC-EEecCC-------CeEEEec--CCHHHHHHHHHHHHHHh
Confidence 11 1 23444455566 444332 2999763 45667999999998764
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=127.27 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=140.9
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccc
Q 046506 12 NFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 12 ~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
.++++|.++.+....+++. .+ .+.++++.+++|++|.+.+ +++|+++|++||+++++|++|+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~l~~-----~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~ 245 (432)
T 3ei9_A 177 NIEYMRCTPENGFFPDLST-----VG------RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS 245 (432)
T ss_dssp TCEEEECCGGGTTSCCGGG-----CC------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred ceEEeccCcccCCcCChhh-----CC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhcc
Confidence 4888888764333444332 01 2446777788999999876 66777789999999999999986543
Q ss_pred cChhhhhh--hcCCCCCCeeeeeccccccc-ccceEEEEEeCchh------HHhhhccCCccccccccccccccCCCCce
Q 046506 89 ICPEFRHF--IDGVEGADSFSLNAHKWFFT-TLDCCCLWVKDPSD------LVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 89 ~~~~~~~~--~~~~~~~D~~~~~~hK~l~~-p~g~g~l~v~~~~~------~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
.... ... ..+....++++.|++|+++. ...+|+++++++.. +...+.....+...
T Consensus 246 ~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 309 (432)
T 3ei9_A 246 DDNP-RSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFN--------------- 309 (432)
T ss_dssp SSCC-SSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCC---------------
T ss_pred CCCC-CChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccC---------------
Confidence 2111 110 11112356888999999973 34578877665431 01111000000000
Q ss_pred eccCCCcchHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRRFRSLKLWFVLRNYG---VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
....+...++...+. .+.++++.++..++.+++.+.|.++ ++++..+....++.+.+.+.+
T Consensus 310 -----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~---------- 373 (432)
T 3ei9_A 310 -----GASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQS---------- 373 (432)
T ss_dssp -----CSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTSC----------
T ss_pred -----CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCCC----------
Confidence 012233333333332 3467888899999999999999987 888775556667777665321
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++...+.++..+++.+.. . .+.+++|+|+ .+++++++.+++.|++.-
T Consensus 374 -------------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~---~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 374 -------------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA---FGHRENILEACRRFKQLY 425 (432)
T ss_dssp -------------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC---CSCHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe---cCCHHHHHHHHHHHHHHh
Confidence 12455555554234444422 1 2467999995 358999999999988754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=131.59 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=137.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+++.+|+++|+++|++.. ....++++.+++|++|.+.| +++|+++|++||+++++|
T Consensus 135 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~D 208 (394)
T 2ay1_A 135 NFMGLP---VQTYRYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLID 208 (394)
T ss_dssp HHHTCC---EEEEECEETTTTEECHHHHHHHHHTCC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCc---eEEEecccccCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345666 889998532245899999999997531 11356777889999999876 557899999999999999
Q ss_pred cccccccccC--h--hhhhhhcCCCCCC-eeeeecccccccc-cceEEEEE--eCchhHHhhhccCCccccccccccccc
Q 046506 81 AAYAGSACIC--P--EFRHFIDGVEGAD-SFSLNAHKWFFTT-LDCCCLWV--KDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 81 ~a~~~~~~~~--~--~~~~~~~~~~~~D-~~~~~~hK~l~~p-~g~g~l~v--~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
++|+.+.... + ..... ... +.+ ++..|+||+++.| ..+|++++ .+++.+..............
T Consensus 209 e~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~------- 279 (394)
T 2ay1_A 209 LAYQGFGDGLEEDAAGTRLI-ASR-IPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQT------- 279 (394)
T ss_dssp ECCTTSSSCHHHHHHHHHHH-HHH-CSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT-------
T ss_pred cCccccccCcccchHHHHHH-hhc-CCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhh-------
Confidence 9997654321 0 01111 111 123 5577899998743 33688887 34432211110000000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEEcC
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNY-----GVANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRVSP 224 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~~~ 224 (310)
..+.-......+..+++.. -.+.++++.++..++.+++.+.|+++. ++++..+.....+.+.+ +
T Consensus 280 -------~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~-~ 351 (394)
T 2ay1_A 280 -------YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA-T 351 (394)
T ss_dssp -------TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCC-C
T ss_pred -------cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCC-C
Confidence 0000011122222233211 024577788888888999999887652 35544332233332211 1
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
. ..+...+.+.|. .+.+ .+|+|+. .++++++++++++|+++
T Consensus 352 ----------------------~---~~~~~~l~~~gi-~v~~-------~~Ris~~--~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 352 ----------------------P---EQVKRIKEEFGI-YMVG-------DSRINIA--GLNDNTIPILARAIIEV 392 (394)
T ss_dssp ----------------------H---HHHHHHHHHHCE-ECCT-------TCEEEGG--GCCTTTHHHHHHHHHHH
T ss_pred ----------------------H---HHHHHHHHhCCE-EecC-------CCeEEee--cCCHhhHHHHHHHHHHc
Confidence 1 234444555664 4432 2599966 47899999999999875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=126.46 Aligned_cols=236 Identities=14% Similarity=0.140 Sum_probs=138.6
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.+|.++.+.+.+|+++|+++|++.. ....++++.+++|++|.+.| +++|+++|++||+++++|+++......
T Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~ 231 (412)
T 1ajs_A 155 IRSYRYWDTEKRGLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp EEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred eEEEeeecCCCCccCHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC
Confidence 778887432246899999999997631 12456777889999999865 568999999999999999998655432
Q ss_pred C---h--hhhhhhcCCCCCCeeeeecccccccccc--eEEEEEe--CchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 90 C---P--EFRHFIDGVEGADSFSLNAHKWFFTTLD--CCCLWVK--DPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 90 ~---~--~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~v~--~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
. . ...... ....-+++..++||.++. .| +|++++. +++.+.........+.... .
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~-~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 295 (412)
T 1ajs_A 232 NLEKDAWAIRYFV-SEGFELFCAQSFSKNFGL-YNERVGNLTVVAKEPDSILRVLSQMQKIVRVT--------------W 295 (412)
T ss_dssp CHHHHTHHHHHHH-HTTCCEEEEEECTTTSCC-GGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--------------T
T ss_pred cccccchHHHHHh-ccCCcEEEEEecccccCC-CCcceEEEEEecCCHHHHHHHHHHHHHHHhcc--------------c
Confidence 2 1 111111 111123778999998875 35 7888872 4432211110000000000 0
Q ss_pred ccCCCcchHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 161 TLSRRFRSLKLWFVLRNYG-----VANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
.+.-......+.++++... .+.++++.++..++.+++.+.|++++ ++++.. +..+++.|. ...
T Consensus 296 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~~------ 366 (412)
T 1ajs_A 296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHIT-DQIGMFSFT--GLN------ 366 (412)
T ss_dssp SSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEEC--CCC------
T ss_pred CCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEe--CCC------
Confidence 0000112222333333221 23667888889999999999998864 365543 333333331 110
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
...+...+.+.| +.+.+ .+|+|++. ++++++++++++|++++++
T Consensus 367 -----------------~~~~~~~l~~~g-v~v~~-------~~Ris~~~--~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 367 -----------------PKQVEYLINQKH-IYLLP-------SGRINMCG--LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp -----------------HHHHHHHHHTTC-EECCT-------TSEEEGGG--CCTTTHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHhCC-EEecC-------CcEEEeee--CCHHHHHHHHHHHHHHHHh
Confidence 023333344555 44433 26999662 5889999999999988765
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=130.83 Aligned_cols=237 Identities=10% Similarity=0.064 Sum_probs=139.4
Q ss_pred eecCCCCCCEEEEec-CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKT-TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~-~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.+|. +++ ++.+|+++|+++|++... ...++++.+++|++|.+.| +++|+++|++||+++++
T Consensus 142 ~~~g~~---~~~v~~~~~~-~~~~d~~~l~~~l~~~~~---~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~ 214 (412)
T 1yaa_A 142 ENQGLK---TATYPYWANE-TKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALF 214 (412)
T ss_dssp HTTTCC---EEEEECEETT-TTEECHHHHHHHHHHSCT---TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHcCce---EEEEeeecCC-CCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445665 899998 543 357999999999976311 1345555899999999866 66789999999999999
Q ss_pred ecccccccccC---h--hhhhhhcCCCC---CCeeeeecccccccccc--eEEEE-Ee-----Cch----hHHhhhccCC
Q 046506 80 DAAYAGSACIC---P--EFRHFIDGVEG---ADSFSLNAHKWFFTTLD--CCCLW-VK-----DPS----DLVNSLSTNP 139 (310)
Q Consensus 80 D~a~~~~~~~~---~--~~~~~~~~~~~---~D~~~~~~hK~l~~p~g--~g~l~-v~-----~~~----~~~~~~~~~~ 139 (310)
|++|+...... + ...... .... -+++..|++|+++ |.| +|+++ +. ++. .+ +.+..
T Consensus 215 De~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~-~~l~~-- 289 (412)
T 1yaa_A 215 DTAYQGFATGDLDKDAYAVRLGV-EKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVT-SQLAK-- 289 (412)
T ss_dssp EESCTTTSSSCHHHHTHHHHHHH-HHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHH-HHHHH--
T ss_pred ecccccccCCcccchhHHHHHHH-hcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHH-HHHHH--
Confidence 99996543321 1 111111 1111 2466789999986 445 68776 23 343 22 21110
Q ss_pred ccccccccccccccCCCCceeccCCCcchHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEec
Q 046506 140 EYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG-----VANLRHFLRSHVNMAKLFERLVGSDK---RFEVVF 211 (310)
Q Consensus 140 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~ 211 (310)
...... ...-......+..+++... .+.++++.++..++.+++.+.|++++ ++++..
T Consensus 290 -~~~~~~--------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 354 (412)
T 1yaa_A 290 -IIRSEV--------------SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIV 354 (412)
T ss_dssp -HHHTTT--------------SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH
T ss_pred -HHhhcc--------------CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec
Confidence 000000 0000011122223333211 23677888888899999999998763 365543
Q ss_pred CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHH
Q 046506 212 PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVM 291 (310)
Q Consensus 212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~ 291 (310)
+..+++.|. +.+ . ..+...+.+.| +.+.+ .+|+|+.. .++++++
T Consensus 355 -~~~~~~~~~--~~~--------------------~---~~~~~~l~~~g-i~v~~-------~~Ris~~~--~~~~~i~ 398 (412)
T 1yaa_A 355 -NQCGMFSFT--GLT--------------------P---QMVKRLEETHA-VYLVA-------SGRASIAG--LNQGNVE 398 (412)
T ss_dssp -HCCSSEEEC--CCC--------------------H---HHHHHHHHHHC-EECCT-------TSEEEGGG--CCTTTHH
T ss_pred -cCceEEEee--CCC--------------------H---HHHHHHHHhCC-EEecc-------CcEEEEcc--CCHhHHH
Confidence 344444331 211 1 23433333455 44433 47999763 5899999
Q ss_pred HHHHHHHHHHHH
Q 046506 292 VAWTVVQEHLEA 303 (310)
Q Consensus 292 ~li~~l~~~~~~ 303 (310)
+++++|+++++.
T Consensus 399 ~~~~~l~~~~~~ 410 (412)
T 1yaa_A 399 YVAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-14 Score=128.06 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=136.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCCh---HHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTL---KPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl---~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+++.+|+++|++++++... .+.++++..++|++|.+.+. ++|+++|++||+++++|
T Consensus 149 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 222 (409)
T 4eu1_A 149 AKAGME---LTPYSYYDPATKGLNLAGMLECLDKAPE---GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVD 222 (409)
T ss_dssp HHTTCE---EEEECCEETTTTEECHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCe---EEEEEeecCcCCcCcHHHHHHHHHhCCC---CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 445665 8889884333568999999999975311 24566667889999999884 55999999999999999
Q ss_pred cccccccccCh-----hhhhhhcCCCCCCeeeeecccccccc-cceEEE--EEeCchhHHhhhccCCccccccccccccc
Q 046506 81 AAYAGSACICP-----EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCL--WVKDPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 81 ~a~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l--~v~~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
.+|+....... ...... +...-.+++.|.+|.++.| ..+|++ ++.++............+.....
T Consensus 223 e~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~------ 295 (409)
T 4eu1_A 223 MAYQGFATGQLDYDAFVPRHLV-DMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMY------ 295 (409)
T ss_dssp ESCTTTTTSCHHHHTHHHHHHH-TTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHH------
T ss_pred ccccccccCCcccchHHHHHHH-hhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhc------
Confidence 99876554321 011111 1111234567889998754 346776 55665421111000000000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHcCCC--C-eEEecCCCceEEEEE
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYG--------VANLRHFLRSHVNMAKLFERLVGSDK--R-FEVVFPRHFAVVCFR 221 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~a~~l~~~L~~~~--~-~~v~~~~~~~~v~~~ 221 (310)
.+ ...+..+++...+. .+.++++.++..++.+++.+.|+++. + +++. ++..+++.|
T Consensus 296 ---------~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~- 362 (409)
T 4eu1_A 296 ---------NN--PPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHI-ERQVGMMAY- 362 (409)
T ss_dssp ---------SS--CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHSCSSEEE-
T ss_pred ---------CC--CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCceEEEE-
Confidence 00 01222222222221 23466778888899999999998762 1 4443 334444444
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.+.. .++...+. +.| +++.+. .|++++. .++++|++++++|+++
T Consensus 363 -~~~~------------------------~~~~~~ll~~~g-v~v~p~-------~Ri~~~~--~~~~~i~~~~~~l~~~ 407 (409)
T 4eu1_A 363 -TGLT------------------------REQVELLRSEYH-IYMTLN-------GRAAVSG--LNSTNVEYVSQAIHNV 407 (409)
T ss_dssp -CCCC------------------------HHHHHHHHHHHC-EECCTT-------CEEEGGG--CCTTTHHHHHHHHHHH
T ss_pred -eCCC------------------------HHHHHHHHHcCC-EEEcCC-------CEEEEEe--cCHhhHHHHHHHHHHH
Confidence 1211 12234444 345 444432 3888763 4556799999999876
Q ss_pred H
Q 046506 301 L 301 (310)
Q Consensus 301 ~ 301 (310)
+
T Consensus 408 l 408 (409)
T 4eu1_A 408 T 408 (409)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=120.75 Aligned_cols=236 Identities=11% Similarity=0.022 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+++||++|.+... ..+.++++...+++.|.+.| +++|+++|++||+++++|.+|.+.............++ ..
T Consensus 205 ~~~le~~i~~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~p 281 (459)
T 4a6r_A 205 ARWLEEKILEIGA--DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QP 281 (459)
T ss_dssp HHHHHHHHHHHCG--GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CC
T ss_pred HHHHHHHHHHcCC--CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CC
Confidence 7899999975311 12456777777777888887 99999999999999999999975433221111001122 36
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|+++++ |++++. ...|+++.+ ++.. +.+.....+.... ++ ++-+..+.++.++++.+..
T Consensus 282 di~t~s--K~l~gg~~~lg~v~~~-~~i~-~~~~~~~~~~~~~-------------t~-~~~~~~~aaa~aal~~~~~-- 341 (459)
T 4a6r_A 282 DLFTAA--KGLSSGYLPIGAVFVG-KRVA-EGLIAGGDFNHGF-------------TY-SGHPVCAAVAHANVAALRD-- 341 (459)
T ss_dssp SEEEEC--GGGGTTSSCCEEEEEC-HHHH-HHHHHHCTTHHHH-------------HH-CSCHHHHHHHHHHHHHHHH--
T ss_pred Ceeehh--hhhcCCCCCccceeeC-HHHH-HHhhcCCCcccCC-------------CC-CCCHHHHHHHHHHHHHHhc--
Confidence 777664 988765 466777664 4333 2221000000000 00 0001122333344443322
Q ss_pred HHHHHHHHH-HHHHHHH----HHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHV-NMAKLFE----RLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 183 ~~~~~~~~~-~~a~~l~----~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+.+.++.. ++.++++ +.|.+.+.+..+ .+...++.+.+...... + .+... -......+.+.+
T Consensus 342 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~---~------~~~~~--~~~~~~~~~~~l 408 (459)
T 4a6r_A 342 -EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RGVGMVQAFTLVKNKAK---R------ELFPD--FGEIGTLCRDIF 408 (459)
T ss_dssp -TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECSBTTT---T------BCCSS--TTHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCccc---c------ccccc--hHHHHHHHHHHH
Confidence 23344444 4444444 444555655544 23445666666532100 0 00000 012235677778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.++|.+.. +. + +++||+++ ...|+++++.++++|++.+.++.
T Consensus 409 ~~~Gv~v~-~~---g-~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 409 FRNNLIMR-AC---G-DHIVSAPP-LVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp HHTTEECE-EE---T-TEEEECCC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCeEEe-cC---C-CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88875443 32 2 78999955 67899999999999999887664
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-12 Score=117.98 Aligned_cols=237 Identities=9% Similarity=0.034 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccC-CcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGT-TAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~-~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
|+++||++|..... .+.+|++.... ++.|.+.| +++|+++|++||++|++|.+|++.......+.....++
T Consensus 196 d~~~le~~l~~~~~---~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~- 271 (448)
T 3dod_A 196 CLRELAQLLEEHHE---EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENV- 271 (448)
T ss_dssp HHHHHHHHHHHHGG---GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred HHHHHHHHHHhCCC---CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCC-
Confidence 58999999973211 24466666666 77887766 99999999999999999999975432222111111122
Q ss_pred CCCeeeeeccccccccc-ceEEEEEeCchhHHhhhccC----CccccccccccccccCCCCceeccCCCcchHHHHHHHH
Q 046506 102 GADSFSLNAHKWFFTTL-DCCCLWVKDPSDLVNSLSTN----PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLR 176 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~-g~g~l~v~~~~~~~~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (310)
..|++++ .|.+++.+ ..|+++.+++ .. +.+... ..+.... ++ .+-+..+.++.++++
T Consensus 272 ~~di~t~--sK~l~~G~~~ig~v~~~~~-~~-~~~~~~~~~~~~~~~~~-------------t~-~~~~~~~aaa~aal~ 333 (448)
T 3dod_A 272 QPDLMAA--GKGITGGYLPIAVTFATED-IY-KAFYDDYENLKTFFHGH-------------SY-TGNQLGCAVALENLA 333 (448)
T ss_dssp CCSEEEE--CGGGGTTSSCCEEEEEEHH-HH-HTTCSCGGGCCCCCCCC-------------TT-TTCHHHHHHHHHHHH
T ss_pred CCCEEEe--cccccCCcCceEEEEECHH-HH-HHhhhccccCCcccccC-------------CC-CcCHHHHHHHHHHHH
Confidence 2677665 49998653 6787776543 33 332210 0000000 00 000112223333444
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHc---CCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHH
Q 046506 177 NYGVANLRHFLRSHVNMAKLFERLVG---SDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNREL 253 (310)
Q Consensus 177 ~~~~~~~~~~~~~~~~~a~~l~~~L~---~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (310)
.+.. +++.++..++.+++++.|. ..|.+... .+...++.+.+...... ..+.+. . .....++
T Consensus 334 ~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~---------~~~~~~-~-~~~~~~~ 398 (448)
T 3dod_A 334 LFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDI-RQLGFMCGAELVRSKET---------KEPYPA-D-RRIGYKV 398 (448)
T ss_dssp HHHH---TTHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTT---------TBCCCG-G-GCHHHHH
T ss_pred HHhc---ccHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EeeeEEEEEEEccCccc---------ccccch-h-hHHHHHH
Confidence 3322 3445555555555555554 44444332 22344566666542100 000000 0 0012456
Q ss_pred HHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 254 LESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 254 ~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.+.+.++|.+. .+. + +.+|++++ ...|+++++.++++|++.+.++.+
T Consensus 399 ~~~l~~~Gv~~-~~~---~-~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 399 SLKMRELGMLT-RPL---G-DVIAFLPP-LASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp HHHHHHTTEEC-CEE---T-TEEEECCC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcEE-ecc---C-CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 77787887543 332 2 68999854 678999999999999999987643
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=121.07 Aligned_cols=218 Identities=10% Similarity=-0.012 Sum_probs=121.3
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
+.+|++...+++.|.+.| +++|+++|++||+++++|.+|.+.............++ ..|++++ .|++++....
T Consensus 226 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~--sK~~~~G~~~ 302 (453)
T 4ffc_A 226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTM--AKGIAGGMPL 302 (453)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSC
T ss_pred EEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhh--hhhhcCCcCe
Confidence 456666666677788877 99999999999999999999975432221111001122 3577665 4999876667
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|+++.+ ++.+ +.+.. ..... ++ ++-+....+..++++.+.. +++.++..++.+++++.
T Consensus 303 G~~~~~-~~i~-~~~~~--~~~~~--------------t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 303 SAVTGR-AELM-DAVYA--GGLGG--------------TY-GGNPVTCAAAVAALGVMRE---LDLPARARAIEASVTSR 360 (453)
T ss_dssp EEEEEE-HHHH-TTSCT--TSSCC--------------SS-SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred EEEEEC-HHHH-hhhcc--cCcCC--------------CC-CcCHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Confidence 887664 3333 22210 00000 00 0101122233334433322 24455555555555555
Q ss_pred Hc----CCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 201 VG----SDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 201 L~----~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
|. +.|.+..+ .....++.+.+..... ..+ + .....++.+.+.++|.+..... .....+
T Consensus 361 l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~----------~~~-~----~~~~~~~~~~l~~~Gv~v~~~~--~~~~~i 422 (453)
T 4ffc_A 361 LSALAEEVDIIGEV-RGRGAMLAIEIVKPGT----------LEP-D----AALTKSIAAEALSQGVLILTCG--TFGNVI 422 (453)
T ss_dssp HHHHHHHCSSEEEE-EEETTEEEEEEBCTTS----------CCB-C----HHHHHHHHHHHHHTTEECCEEC--TTSCEE
T ss_pred HHHHHhhCCCeEEE-EeeceEEEEEEecCcc----------cCC-C----HHHHHHHHHHHHhCCCEEecCC--CCCCEE
Confidence 54 44555443 2234566666643100 000 0 2233567777888885443321 123689
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
|++++ ...++++++.++++|++++.++.+
T Consensus 423 Ri~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 423 RLLPP-LVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred EEECC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99955 568999999999999999887643
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=124.07 Aligned_cols=230 Identities=12% Similarity=0.071 Sum_probs=132.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++... .+.++++...+++.|.+.| +++|+++|++||+++++|++|.+. ...........++ .
T Consensus 186 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~ 260 (429)
T 3k28_A 186 DLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-T 260 (429)
T ss_dssp CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-C
T ss_pred CHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCC-C
Confidence 89999999986422 2456777777778899888 999999999999999999999654 2221111001122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHH---HHHHHHh
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKL---WFVLRNY 178 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~ 178 (310)
.|.+++ .|.++++..+|+++.+ ++.+ +.+.. ...+... +.....++. .++++..
T Consensus 261 ~di~t~--sK~~~~G~~iG~~~~~-~~~~-~~~~~~~~~~~~~------------------t~~~~~~a~aaa~aal~~~ 318 (429)
T 3k28_A 261 PDLTCL--GKVIGGGLPVGAYGGK-AEIM-RQVAPSGPIYQAG------------------TLSGNPLAMAAGYETLVQL 318 (429)
T ss_dssp CSEEEE--CGGGGTTSCCEEEEEC-HHHH-TTBTTTSSBCCCC------------------TTTTCHHHHHHHHHHHHTC
T ss_pred Cceehh--hhhhcCCCCeEEEEEc-HHHH-hhhccCCCccccC------------------CCCCChHHHHHHHHHHHHH
Confidence 676654 5999876678887664 4333 22211 1001110 011122333 3344433
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELL 254 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (310)
. ++..++..++.+++++.|.++ +.+..+ ++..+++.+.+.......... . ..+ + .....++.
T Consensus 319 ~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~-~---~~~-~----~~~~~~~~ 384 (429)
T 3k28_A 319 T----PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVINYDA-A---KSS-N----LQFFAAYY 384 (429)
T ss_dssp C----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCCSHHH-H---TTS-C----HHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCcccccc-c---ccc-c----HHHHHHHH
Confidence 2 566777777777777777653 332222 233455666554321000000 0 000 0 12235677
Q ss_pred HHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 255 ESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 255 ~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.+.++|. .+.+. +.+.+|++ ..+|++|+++++++|++++.++
T Consensus 385 ~~l~~~Gv-~v~~~---~~~~~r~~---~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 385 REMVEQGV-FLPPS---QFEGLFLS---TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHTTE-ECCSS---TTSCBCCC---TTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCe-EEecC---CCCCEEEE---CCCCHHHHHHHHHHHHHHHHHH
Confidence 77878874 33322 34567875 3578999999999999987654
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-13 Score=124.07 Aligned_cols=177 Identities=15% Similarity=0.060 Sum_probs=116.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEec----cCCcccccCChHHHHHHHHH--hCcEEE
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATI----GTTAITAVDTLKPLCDVAKQ--FGIWVH 78 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~----~~~~~G~~~pl~~I~~l~~~--~g~~l~ 78 (310)
..|+. ++.+|.+++ +.+|+++|+++|++. +.+|+++. +++.+|.+.|+++|+++|++ +|++++
T Consensus 137 ~~G~~---~~~v~~~~~--~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~li 205 (431)
T 3ht4_A 137 EYNIG---YNAVPLTEG--GLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVF 205 (431)
T ss_dssp GGTCE---EEECCBCTT--SSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred HcCCE---EEEeCCCCC--CCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEE
Confidence 35666 889998864 589999999999754 45777776 66778889999999999999 999999
Q ss_pred eecccccccccChhhhhhhcCCCCCCeeeeeccccccc---ccceEEEEEeCchhHHhhhc--cCCcccccccccccccc
Q 046506 79 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFT---TLDCCCLWVKDPSDLVNSLS--TNPEYLKNKATESKQVV 153 (310)
Q Consensus 79 vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~---p~g~g~l~v~~~~~~~~~~~--~~~~y~~~~~~~~~~~~ 153 (310)
||++|+.+....... .. ++|+++.|+||++++ |.| |+++.+ ++.++.... ..+.+...
T Consensus 206 vDea~~~~~~~~~~~-----~~-g~Di~~~S~sK~lgg~~~~~G-G~v~~~-~~li~~l~~~~~~~~~g~~--------- 268 (431)
T 3ht4_A 206 VDNCYGEFIEEQEPC-----HV-GADLMAGSLIKNPGGGIVKTG-GYIVGK-EQYVEACAYRLTSPGIGAE--------- 268 (431)
T ss_dssp EECTTCTTSSSCCGG-----GT-TCSEEEEETTSGGGTTTCSSC-EEEEEC-HHHHHHHHHHHSCTTTTTS---------
T ss_pred EeCCChhhccCCCcc-----cc-CCeEEEcCccccCCCCCCCce-EEEEec-HHHHHHHHHHhccCCcccc---------
Confidence 999998776432211 11 489999999999876 556 666654 444333211 11111000
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-----EEEEEEc
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-----VVCFRVS 223 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~~~~~ 223 (310)
.+-.+.. .+.+++ +......++++..++++++++.|+++ ++++... ... ++++.+.
T Consensus 269 --------~~~~~~~--~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~l~ 329 (431)
T 3ht4_A 269 --------AGASLYS--LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQFD 329 (431)
T ss_dssp --------CSCCCSC--SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEECC
T ss_pred --------cCccHHH--HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEEeC
Confidence 0100111 111222 23445678888999999999999887 5666422 222 5666664
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-14 Score=128.95 Aligned_cols=232 Identities=12% Similarity=0.033 Sum_probs=132.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.+|.++++.+..+++ +. + .+.+|++++++|++|.+.| +++|+++|+++|+++++|++|+.....
T Consensus 143 ~~~~~~~~~~~~~~~l~---~~--~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 211 (400)
T 3asa_A 143 IIALPCLQENAFFPEFP---ED--T------HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISD 211 (400)
T ss_dssp EEEEECCGGGTTCCCCC---TT--C------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCC
T ss_pred eEecccchhcCcccChh---hc--c------CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcC
Confidence 78888875433334432 21 1 2446777788999999987 667899999999999999999754321
Q ss_pred ChhhhhhhcCCC---CCCeeeeecccccccc-cceEEEEEeCchh------HHhhhccCCccccccccccccccCCCCce
Q 046506 90 CPEFRHFIDGVE---GADSFSLNAHKWFFTT-LDCCCLWVKDPSD------LVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 90 ~~~~~~~~~~~~---~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~------~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
...... ...+. +.+++..+++|+++.| ..+|+++++++.. +.......... .
T Consensus 212 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 273 (400)
T 3asa_A 212 PSLPKS-IFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLST-----------------T 273 (400)
T ss_dssp TTSCSS-GGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHH-----------------H
T ss_pred CCCCCc-hhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhcc-----------------C
Confidence 110000 11111 2347789999998744 3478887654421 22211000000 0
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEE-EcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR-VSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~ 238 (310)
+ .+ ...+...++...+....++++.++..++.+++.+.|++. ++++..+...+++.+. ++...
T Consensus 274 ~-~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------------ 337 (400)
T 3asa_A 274 F-NG--ASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANI------------ 337 (400)
T ss_dssp C-CC--CCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTTC------------
T ss_pred c-cC--CChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCCC------------
Confidence 0 00 011222222222211146677888888999999999887 8888755456667666 43210
Q ss_pred cchhHHHHHHHHHHHHHHHHhc-CcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINAS-GKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+.+.++ |. .+.+. .. .+.+++|+| . .+++++++.++++|++++..
T Consensus 338 ---~-------~~~~~~~l~~~~gv-~v~~g~~f~~~~~~~iRis-~--~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 338 ---S-------DRDLFDFFLREYHI-AITPGIGFGRSGSGFVRFS-S--LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp ---C-------TTTHHHHHHHHHSE-ECEEGGGGCGGGTTCEEEE-C--CSCHHHHHHHHHHHHC----
T ss_pred ---C-------HHHHHHHHHHhCCE-EEeChhHhCCCCCCEEEEE-e--eCCHHHHHHHHHHHHHHHHh
Confidence 0 02355555544 54 44432 11 134689999 3 47899999999999887654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=126.41 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=136.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+.+.+|++++++.+.+.+ ..+.++++..++|++|.+.+ +++|+++|++||+++++|
T Consensus 141 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 214 (401)
T 7aat_A 141 RDAGLQ---LQAYRYYDPKTCSLDFTGAMEDISKIP---EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFD 214 (401)
T ss_dssp HHTTCE---EEEEECEETTTTEECHHHHHHHHTTSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCe---eEeeeeeccccCccCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEc
Confidence 445665 889998643346899999999886521 12567888899999997655 788999999999999999
Q ss_pred cccccccccChh-----hhhhhcCCCCCCeeeeecccccccc-cceEEEEEe--CchhHHhhhccCCccccccccccccc
Q 046506 81 AAYAGSACICPE-----FRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVK--DPSDLVNSLSTNPEYLKNKATESKQV 152 (310)
Q Consensus 81 ~a~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~--~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (310)
.++......... ..... ....-.+++.|+||.++.| ..+|++++. ++............+.....
T Consensus 215 eay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~------ 287 (401)
T 7aat_A 215 MAYQGFASGDINRDAWALRHFI-EQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMY------ 287 (401)
T ss_dssp ESCTTTTTSCHHHHTHHHHHHH-HTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHH------
T ss_pred cccccccCCCccccHHHHHHHH-hcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhcc------
Confidence 998655442210 11111 1123456789999998754 227887752 33211111000000000000
Q ss_pred cCCCCceeccCCCcchHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEE
Q 046506 153 VDYKDWQITLSRRFRSLKLWFVLRNYG--------VANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFR 221 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~ 221 (310)
. .........+...+. .+.+++..++..++.+++.+.|.++ +++.+. ++..+.+.|.
T Consensus 288 ---------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~ 355 (401)
T 7aat_A 288 ---------S--NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMFCFT 355 (401)
T ss_dssp ---------S--SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSEEEC
T ss_pred ---------C--CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcee-cCCcceEEec
Confidence 0 001122222221221 2346677788888999999999876 234433 3344444332
Q ss_pred EcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH-HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 222 VSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI-NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+.. . +.+ ..+ .+.| +++.+ .+|+|++. .+++ +|++++++|+++
T Consensus 356 --~~~--------------------~---~~~-~~ll~~~g-i~v~~-------~~Ris~~~-~~~~-~i~~~~~~l~~~ 399 (401)
T 7aat_A 356 --GLK--------------------P---EQV-ERLTKEFS-IYMTK-------DGRISVAG-VASS-NVGYLAHAIHQV 399 (401)
T ss_dssp --CCC--------------------H---HHH-HHHHHHHC-EECCT-------TCEEEGGG-CCTT-THHHHHHHHHHH
T ss_pred --CCC--------------------H---HHH-HHHHHhCC-EeccC-------CCeEEecc-CChh-hHHHHHHHHHHH
Confidence 211 1 123 333 3445 44432 26999764 4544 599999999886
Q ss_pred H
Q 046506 301 L 301 (310)
Q Consensus 301 ~ 301 (310)
+
T Consensus 400 ~ 400 (401)
T 7aat_A 400 T 400 (401)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=126.13 Aligned_cols=237 Identities=15% Similarity=0.134 Sum_probs=137.9
Q ss_pred ecCCCCCCEEEEec-CCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKT-TKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~-~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
..|.. ++.+|. ++++++.+|+++|+++|++... ...++++..++|++|.+.+ +++|+++|++||+++++|
T Consensus 168 ~~G~~---v~~~~~~~~~~~~~~d~e~l~~~l~~~~~---~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~D 241 (448)
T 3meb_A 168 KLKVP---YKEYTYLRKDGELEIDFSNTKKDIQSAPE---KSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD 241 (448)
T ss_dssp TTTSC---CEEECCBCTTSCSSBCHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hCCCe---EEEEeccccccCCCcCHHHHHHHHHhCCC---CcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 56666 899998 5432468999999999986311 2457777888999999877 555999999999999999
Q ss_pred cccccccccCh-----hhhhhhcCCCCCCeeeeecccccccc-cceEEE--EE--------eCchh---HHhhhccCCcc
Q 046506 81 AAYAGSACICP-----EFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCL--WV--------KDPSD---LVNSLSTNPEY 141 (310)
Q Consensus 81 ~a~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l--~v--------~~~~~---~~~~~~~~~~y 141 (310)
.++........ ....... ...-.+++.|+||.++.| ..+|++ +. .++.. +...+.. .
T Consensus 242 eay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~---~ 317 (448)
T 3meb_A 242 SAYQGFATGSFEADAFAVRMFVD-AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL---Q 317 (448)
T ss_dssp ESCTTTSSSCHHHHTHHHHHHHH-TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH---H
T ss_pred cccccccCCCcccCchhHHHHhh-cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH---H
Confidence 99875543321 0111111 111235679999998744 236776 44 33311 1111100 0
Q ss_pred ccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH--------HHHHHHHHHHHHHHHHHHHHHcCC--CC-----
Q 046506 142 LKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV--------ANLRHFLRSHVNMAKLFERLVGSD--KR----- 206 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~a~~l~~~L~~~--~~----- 206 (310)
.... .+ ....+..+++...+.. +.++++.++..++.+++.+.|.++ ++
T Consensus 318 ~~~~----------------~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~ 380 (448)
T 3meb_A 318 IRKT----------------WS-MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKG 380 (448)
T ss_dssp HHTT----------------TS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTC
T ss_pred Hhcc----------------cC-CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCccc
Confidence 0000 00 0112222333333222 336777888889999999999876 44
Q ss_pred -eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCC
Q 046506 207 -FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATL 284 (310)
Q Consensus 207 -~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~ 284 (310)
+... .+..+.+.| .+.. .++...+. +.| +++.+.. .|+|+..
T Consensus 381 ~~~~~-~~~~g~~~~--~~~~------------------------~~~~~~ll~~~g-V~v~~G~------gRis~a~-- 424 (448)
T 3meb_A 381 TWDHI-LTAIGMFTF--TGLT------------------------PEHVDYLKEKWS-IYLVKAG------GRMSMCG-- 424 (448)
T ss_dssp CCTHH-HHCCSSEEE--CCCC------------------------HHHHHHHHHHHC-EEECSGG------GEEEGGG--
T ss_pred cccee-CCCceEEEe--cCCC------------------------HHHHHHHHHhCC-EEEeCCC------cEEEEec--
Confidence 3333 233333333 2211 13334443 445 4554421 2999763
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 046506 285 TEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 285 ~t~edi~~li~~l~~~~~~~ 304 (310)
.++++|++++++|+++++++
T Consensus 425 ~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 425 LTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp CCTTTHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 35567999999999988743
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-12 Score=116.57 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
+++.+++.|.+... ...+.+|+++..+++.|.+.| +++|+++|++||+++++|.+|.+.............++ .
T Consensus 211 ~~~~~~~~l~~~~~-~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~ 288 (451)
T 3oks_A 211 AAKRAITVIDKQIG-ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-D 288 (451)
T ss_dssp HHHHHHHHHHHHTC-GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred HHHHHHHHHHhhcC-CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-C
Confidence 35555566654211 112456777777777788877 99999999999999999999975433221111001122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|++++ .|++++....|+++.+ ++.. +.+.. ..... ++ ++-+....+..++++.+..
T Consensus 289 pdi~t~--sK~l~~G~~iG~v~~~-~~~~-~~~~~--~~~~~--------------t~-~~~~~~~aaa~aal~~~~~-- 345 (451)
T 3oks_A 289 PDLIVT--AKGIAGGLPLSAVTGR-AEIM-DSPHV--SGLGG--------------TY-GGNPIACAAALATIETIES-- 345 (451)
T ss_dssp CSEEEE--CGGGGTTSSCEEEEEE-HHHH-TCSCT--TSBCC--------------SS-SSCHHHHHHHHHHHHHHHH--
T ss_pred CCeeee--hhhhhCCcceEEEEEC-HHHH-hhhcC--CCcCC--------------CC-CCCHHHHHHHHHHHHHHhh--
Confidence 677655 5999876667877664 3333 22210 00000 00 0101122223334433322
Q ss_pred HHHHHHHHHHHHHHHHHHHc----CCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 046506 183 LRHFLRSHVNMAKLFERLVG----SDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN 258 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 258 (310)
+++.++..++.+++++.|. +.|.+..+ .....++.+.+..... ..+ + ......+.+.+.
T Consensus 346 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~----------~~~-~----~~~~~~~~~~l~ 408 (451)
T 3oks_A 346 -EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKAGT----------TEP-D----ADLTKALCAGAH 408 (451)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBSTTS----------CCB-C----HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecCcc----------CCC-C----HHHHHHHHHHHH
Confidence 2445555556666665554 34555433 2234466666643100 000 0 223356777788
Q ss_pred hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 259 ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 259 ~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
++|.+..... .....+|++++ ...+++++++++++|++.+.
T Consensus 409 ~~Gv~v~~~~--~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 409 AAGVIVLSCG--TYGNVVRFLPP-LSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp HTTEECEEEC--TTSCEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred hCCcEEecCC--CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHh
Confidence 8885444322 12368999955 56899999999999998765
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=119.73 Aligned_cols=237 Identities=10% Similarity=0.030 Sum_probs=131.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++|+++|++... .+.+|+++..++++|.+.| +++|.++|++||+++++|++|++. ...........++
T Consensus 188 ~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~- 262 (434)
T 2epj_A 188 NDVEALERVFAEYGD---RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI- 262 (434)
T ss_dssp TCHHHHHHHHHHHGG---GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-
T ss_pred CCHHHHHHHHHhCCC---CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-
Confidence 378999999976311 2456777666677899888 999999999999999999999844 2222111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|++ +.+|++++....|+++.++ +.+ +.+.. ...+.... + .+-+..+.++.++++.+..
T Consensus 263 ~~di~--s~sK~l~~G~~~G~v~~~~-~~~-~~l~~~~~~~~~~t--------------~-~~~~~~~aa~~a~l~~~~~ 323 (434)
T 2epj_A 263 EGDII--VLGKIIGGGFPVGAVAGSR-EVM-SLLTPQGKVFNAGT--------------F-NAHPITMAAGLATLKALEE 323 (434)
T ss_dssp CCSEE--EEEGGGGTTSSCEEEEECH-HHH-TTBTTTSSBCCCCT--------------T-TTCHHHHHHHHHHHHHHHH
T ss_pred CCCee--eecchhcCCcceeeeeecH-HHH-HhhccCCCcccCCC--------------C-CcCHHHHHHHHHHHHHHHh
Confidence 36776 4569998744578877653 333 22211 00000000 0 0001122233344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+++.++..++.+++++.|+++. ++....++..+++.+.+........ ++. ..+ + .....++.+.|
T Consensus 324 ---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~---~~~-~----~~~~~~~~~~l 391 (434)
T 2epj_A 324 ---EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNA-AQA---RKA-D----KKFYVKLHEEM 391 (434)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSH-HHH---TTS-C----HHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccc-hhc---ccc-C----HHHHHHHHHHH
Confidence 4566777778888888886541 2321112345567776654100000 000 000 0 11234677777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.++|. .+.+. +...+|++ ..++++|+++++++|++.+.++.
T Consensus 392 ~~~Gv-~v~~~---~~~~~~~~---~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 392 LRRGV-FIAPS---NLEAVFTG---LPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp HHTTE-ECCSS---TTSCEECC---TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCe-EEecc---CCCcEEEe---ccCCHHHHHHHHHHHHHHHHHHh
Confidence 77774 44332 12234543 46899999999999999887764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-14 Score=127.61 Aligned_cols=237 Identities=13% Similarity=0.094 Sum_probs=137.0
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|.++.+++.+|+++|++++++.+ ....++++.+++|++|.+.| +++|+++|++||+++++|
T Consensus 138 ~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 211 (396)
T 2q7w_A 138 NSAGLE---VREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFD 211 (396)
T ss_dssp HHTTCE---EEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHcCCc---eEEEecccCCCCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345665 888988532246899999999997531 11456777899999999876 567999999999999999
Q ss_pred cccccccccC----hhhhhhhcCCCCCCeeeeecccccccc-cceEEEEE--eCchhHHhhhccCCcccccccccccccc
Q 046506 81 AAYAGSACIC----PEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWV--KDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 81 ~a~~~~~~~~----~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v--~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
++|+.+.... ....... ....-+++..|++|+++.| ..+|++++ .+++.+.+............
T Consensus 212 e~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 282 (396)
T 2q7w_A 212 FAYQGFARGLEEDAEGLRAFA-AMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRAN-------- 282 (396)
T ss_dssp ESCTTSSSCHHHHTHHHHHHH-HHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT--------
T ss_pred cccccccCCccchhHHHHHHH-hcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhc--------
Confidence 9987654321 0111111 1112356789999998743 22688876 24422111110000000000
Q ss_pred CCCCceeccCCCcchHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEE
Q 046506 154 DYKDWQITLSRRFRSLKLWFVLRNYG--------VANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRV 222 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~ 222 (310)
..+ ...+...++...+. .+.+++..++..++.+++.+.|+++. ++++. ++..+++.+ +
T Consensus 283 ------~~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~-~ 351 (396)
T 2q7w_A 283 ------YSN---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI-IKQNGMFSF-S 351 (396)
T ss_dssp ------TSS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH-HHCCSSEEE-C
T ss_pred ------cCC---CCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCCceEEE-e
Confidence 000 01222223333332 24566777888889999999998763 35544 334344433 1
Q ss_pred cCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 223 SPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.-. . ..+...+.+.|. .+.+ .+|+|+.. .++++++.++++|+++
T Consensus 352 ~~~---------------------~---~~~~~~l~~~gv-~v~~-------~~Ris~~~--~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 352 GLT---------------------K---EQVLRLREEFGV-YAVA-------SGRVNVAG--MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp CCC---------------------H---HHHHHHHHHHCE-ECCT-------TCEEEGGG--CCTTTHHHHHHHHHHH
T ss_pred cCC---------------------H---HHHHHHHHhcCe-eecC-------CceEEEee--cCHHHHHHHHHHHHhc
Confidence 111 1 234444555663 4433 26999763 4889999999999875
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=118.62 Aligned_cols=234 Identities=9% Similarity=-0.026 Sum_probs=130.4
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++|+++|++... .+.+|+++...+++|.+.| +++|+++|++||+++++|++|++. ...........++
T Consensus 186 ~d~~~le~~l~~~~~---~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~- 260 (453)
T 2cy8_A 186 DDIEGMREVFANHGS---DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDV- 260 (453)
T ss_dssp TCHHHHHHHHHHHGG---GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-
T ss_pred CCHHHHHHHHHhcCC---CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-
Confidence 489999999975311 1456666666666898877 999999999999999999999744 2221111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhcc---CCccccccccccccccCCCCceeccCCCcchHHHHHHHHH-
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST---NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRN- 177 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 177 (310)
..|++ +..|+++++..+|+++.++ +.. +.+.. ...+... ++ .+-+..+.++.++++.
T Consensus 261 ~~di~--s~sK~l~~G~~~G~v~~~~-~~~-~~l~~~~~~~~~~~~--------------t~-~~n~~~~aa~~aal~~~ 321 (453)
T 2cy8_A 261 QPDLT--CLAKASAGGLPGGILGGRE-DVM-GVLSRGSDRKVLHQG--------------TF-TGNPITAAAAIAAIDTI 321 (453)
T ss_dssp CCSEE--EEEGGGGTTSSCEEEEECH-HHH-TTSSSCC-----------------------C-CCCHHHHHHHHHHHHHH
T ss_pred CCcEE--EEChhhhCCcceEEEechH-HHH-HHhccccCCCceeCC--------------CC-CCCHHHHHHHHHHHHHH
Confidence 36766 5569998766788887764 333 22211 0000000 00 0001122333344443
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHcCC----CCeEEecCCCceEEEEEEcC-----CcchhhhhhhhccccchhHHHHHH
Q 046506 178 YGVANLRHFLRSHVNMAKLFERLVGSD----KRFEVVFPRHFAVVCFRVSP-----SAVMDKLKTKYENSLLSEEERINE 248 (310)
Q Consensus 178 ~~~~~~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 248 (310)
+ .+++.++..++.+++++.|.++ +-.... ++...++.+.+.. .......++ ...+ + ..
T Consensus 322 ~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~---~~~~-~----~~ 388 (453)
T 2cy8_A 322 L----EDDVCAKINDLGQFAREAMNHLFARKGLNWLA-YGRFSGFHLMPGLPPNTTDTGSITRAE---VARP-D----VK 388 (453)
T ss_dssp H----HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCTTEEEEEETSCTTCCCCHHHHTTC---SCCC-C----HH
T ss_pred h----hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEEEEEEeccccccccccccccc---cccc-c----HH
Confidence 3 2445667777888888877653 322222 3455677777653 100000000 0000 0 11
Q ss_pred HHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 249 FNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 249 ~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
...++.+.|.++|. .+.+ . +.+|++ ...+++++++++++|++.+..+.
T Consensus 389 ~~~~l~~~l~~~Gv-~v~~----~-~~~~l~---~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 389 MIAAMRMALILEGV-DIGG----R-GSVFLS---AQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp HHHHHHHHHHHTTE-ECBT----T-TEEECC---TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCe-EEeC----C-CCEEee---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 23457777777764 4332 1 235543 56899999999999999987764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=119.17 Aligned_cols=235 Identities=9% Similarity=-0.069 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++... .+.+|++...++++|.+.| +++|+++|++||+++++|++|++. ...........++ .
T Consensus 185 d~~~le~~l~~~~~---~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~ 259 (427)
T 3fq8_A 185 DLEAVKALFAENPG---EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-T 259 (427)
T ss_dssp CHHHHHHHHHHSTT---TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-C
T ss_pred CHHHHHHHHHhCCC---CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-C
Confidence 89999999976321 2567777777788899999 999999999999999999999744 2221111111222 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+++++ |++++....|+++. +++.+ +.+.....+.... ++ .+-+..+.++.++++.+..
T Consensus 260 ~di~t~s--K~~~~G~~~G~~~~-~~~~~-~~~~~~~~~~~~~-------------t~-~~~~~~~aa~~aal~~~~~-- 319 (427)
T 3fq8_A 260 PDLTTLG--KIIGGGLPVGAYGG-KREIM-QLVAPAGPMYQAG-------------TL-SGNPLAMTAGIKTLELLRQ-- 319 (427)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEE-CHHHH-TTBTTTSSBCCCC-------------TT-TTCHHHHHHHHHHHHHHTS--
T ss_pred CChhhhh--hhhhCCcceEEEEE-cHHHH-HhhccCCCccccC-------------CC-CcCHHHHHHHHHHHHHHHh--
Confidence 6776555 99985444787765 44343 2221110000000 00 0001122333344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
+++.++..++.+++++.|.++. ++.........++.+.+........ + ... ..+ .....++.+.+.+
T Consensus 320 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~--~~~--~~~----~~~~~~l~~~l~~ 389 (427)
T 3fq8_A 320 -PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNY-E--DAK--KSD----LQKFSRFHRGMLE 389 (427)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSH-H--HHT--TSC----HHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccc-c--ccc--ccc----HHHHHHHHHHHHH
Confidence 3455566666666666665420 1211111234455665543211000 0 000 000 1223467777877
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+|.+ +.+. +.. |++++ ..+|++|+++++++|++++.+
T Consensus 390 ~Gi~-v~~~---~~~--r~~~~-~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 390 QGIY-LAPS---QFE--AGFTS-LAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp TTEE-CCSS---TTS--CEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcE-EecC---CCC--CEEee-CcCCHHHHHHHHHHHHHHHHh
Confidence 8753 3321 112 55534 568999999999999988754
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=119.75 Aligned_cols=233 Identities=9% Similarity=0.041 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|+++|++... .+.+|+++..+++.|.+.| +++|.++|++||+++++|++|++. ...........++ .
T Consensus 186 d~~~le~~l~~~~~---~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~ 260 (429)
T 4e77_A 186 DLASVRQAFEQYPQ---EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-I 260 (429)
T ss_dssp CHHHHHHHHHHSTT---TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-C
T ss_pred CHHHHHHHHHhcCC---CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-C
Confidence 89999999975311 2456666666677888888 999999999999999999999744 2221111111122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|++++....|+++. +++.+ +.+... ..+.... + .+-+..+.++.++++.+..
T Consensus 261 pdi~t~--sK~~~~G~~~G~~~~-~~~~~-~~l~~~~~~~~~~t--------------~-~~~~~~~aaa~aal~~~~~- 320 (429)
T 4e77_A 261 PDLTCL--GKIIGGGMPVGAFGG-RREVM-NALAPTGPVYQAGT--------------L-SGNPIAMAAGFACLTEISQ- 320 (429)
T ss_dssp CSEEEE--EGGGGTTSCCEEEEE-CHHHH-TTBTTTSSBCC--C--------------C-CCCHHHHHHHHHHHHHHTS-
T ss_pred CCeeee--cccccCCCCeEEEEE-CHHHH-HHhccCCCccccCC--------------C-CCCHHHHHHHHHHHHHHHh-
Confidence 576644 599987666777665 44333 222110 0011100 0 0111122333444444422
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCc-chhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSA-VMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
+++.++..++.+++++.|.++ .++....+....++.+.+.... ...... .. ..+ .....++.+.|
T Consensus 321 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~----~~~----~~~~~~~~~~l 389 (429)
T 4e77_A 321 --VGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQD-VM----NCD----VERFKRFFHLM 389 (429)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHH-HH----TSC----HHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccc-cc----ccc----HHHHHHHHHHH
Confidence 345555666666666666542 1221111223455666654421 000000 00 000 12234677778
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.++|. .+.+. +...+|++ ..+|++|+++++++|++++.
T Consensus 390 ~~~Gi-~v~~~---~~~~~~~~---~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 390 LEEGV-YLAPS---AFEAGFMS---LAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp HHTTE-ECCSS---TTSCEECC---TTCCHHHHHHHHHHHHHHHT
T ss_pred HHCCe-EEeec---CCCCEEEe---ccCCHHHHHHHHHHHHHHHH
Confidence 88874 33322 22334543 46899999999999998764
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=118.59 Aligned_cols=271 Identities=10% Similarity=0.000 Sum_probs=143.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHH--HHhCcEEEeeccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVA--KQFGIWVHVDAAYAGSA 87 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~--~~~g~~l~vD~a~~~~~ 87 (310)
++.+|+++++.+.+|+++|++++++. +.+++++.++|++|.+.+ +++|+++| +++|+++++|++++.+.
T Consensus 220 ~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~ 293 (546)
T 2zy4_A 220 EVAINADPSLNWQYPDSELDKLKDPA------IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFA 293 (546)
T ss_dssp EEEEECBGGGTTBCCHHHHGGGGSTT------EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGS
T ss_pred EEEEecCcccCCCCCHHHHHHhhCCC------CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhc
Confidence 78888887555789999999876432 457777789999999887 56688898 78999999999997654
Q ss_pred ccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCC---------ccccccccc-cccc----
Q 046506 88 CICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNP---------EYLKNKATE-SKQV---- 152 (310)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~---------~y~~~~~~~-~~~~---- 152 (310)
......... ....++++.|++|+++.| .-+|+++..++..+.......| .|....... ....
T Consensus 294 ~~~~s~~~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~ 370 (546)
T 2zy4_A 294 DDFQSLFAI---CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRL 370 (546)
T ss_dssp TTCCCHHHH---CGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHH
T ss_pred ccCcCHHHh---CCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhh
Confidence 321111111 112467889999998755 2378888776533322211100 000000000 0000
Q ss_pred c-CCCCc--eeccCCC-c--chHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEE-EEEEc
Q 046506 153 V-DYKDW--QITLSRR-F--RSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVV-CFRVS 223 (310)
Q Consensus 153 ~-~~~~~--~~~~~~~-~--~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v-~~~~~ 223 (310)
. +.+.. ....+.. + .++++.+....+ +....++..+...++.+.+.+.|. . ++.+ .++..+.+ .+.+.
T Consensus 371 ~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~-~~~~~~~~l~~~l~ 447 (546)
T 2zy4_A 371 VADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-PPLR-DENAVDYYTLIDLQ 447 (546)
T ss_dssp HHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCC-CTTBCCSEEEEEHH
T ss_pred hhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-Cccc-CCCCeeEEEEEEHH
Confidence 0 00000 0000111 0 111111111222 233456666667777777788775 3 3332 24455543 44432
Q ss_pred CCcchhhhhhhhccccchhHHHHHH----HHHHHHHHHHhcCcEEEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHHHH
Q 046506 224 PSAVMDKLKTKYENSLLSEEERINE----FNRELLESINASGKAYMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTVVQ 298 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~g~~~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~l~ 298 (310)
... +.... .....+-. -...+.+.+.+.|.....+.... +.+++|+|+. ..++++++.+++.|+
T Consensus 448 ~~~-----~~~~~----~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~--~~~~e~i~~~~~~l~ 516 (546)
T 2zy4_A 448 DVT-----AKLYG----EAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA--NLNEYEYAAIGRALR 516 (546)
T ss_dssp HHH-----HHHHC----HHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS--SSCHHHHHHHHHHHH
T ss_pred Hhh-----ccccc----HHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec--cCCHHHHHHHHHHHH
Confidence 100 00000 00000000 01234555666776555433222 3468999965 357999999999999
Q ss_pred HHHHHHhh
Q 046506 299 EHLEALLS 306 (310)
Q Consensus 299 ~~~~~~~~ 306 (310)
+++..+.+
T Consensus 517 ~~l~~~~~ 524 (546)
T 2zy4_A 517 KMADELYA 524 (546)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877653
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-11 Score=110.23 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=126.2
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
.|+++|+++|++... .+.+|+++..++++|.+.| +++|.++ ++||+++++|++|++. ...........++
T Consensus 184 ~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~- 257 (424)
T 2e7u_A 184 NDPEGLREVLKRRGE---EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL- 257 (424)
T ss_dssp TCHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-
T ss_pred CCHHHHHHHHHhCCC---CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-
Confidence 478999999975311 1445666665666898888 9999999 9999999999999844 3222111001122
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|++ +.+|++++...+|+++.++ +.. +.+.. ...+.... + .+-+....++.++++.+..
T Consensus 258 ~~di~--s~sK~l~~G~~~G~~~~~~-~~~-~~~~~~~~~~~~~t--------------~-~~~~~~~aaa~aal~~~~~ 318 (424)
T 2e7u_A 258 KPDLV--TLGKILGGGLPAAAYAGRR-EIM-EKVAPLGPVYQAGT--------------L-SGNPLAMAAGLATLELLEE 318 (424)
T ss_dssp CCSEE--EECGGGGTTSSCEEEEECH-HHH-TTBTTTSSBCCCCT--------------T-CSCHHHHHHHHHHHHHHHH
T ss_pred Ccchh--hhhhhhhCCcceEEEEEcH-HHH-hhhcccCCcccCCC--------------C-CCCHHHHHHHHHHHHHHHh
Confidence 36765 5679999755678877654 333 32211 00010000 0 0001122233344443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 257 (310)
.+++.++..++.+++++.|+++ .++....++..+++.+.+........ ++. ..+ + .....++.+.|
T Consensus 319 --~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~---~~~-~----~~~~~~~~~~l 387 (424)
T 2e7u_A 319 --NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTF-QDA---RRT-D----TELFKRFFHGL 387 (424)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSH-HHH---TTS-C----HHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcch-hhh---ccc-C----HHHHHHHHHHH
Confidence 2556777788888888888654 13321112344566666643100000 000 000 0 11234677777
Q ss_pred HhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 258 NASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.++|. .+.+. +...+|++ ...+++++++++++|++.
T Consensus 388 ~~~Gv-~v~~~---~~~~~~~~---~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 388 LDRGI-YWPPS---NFEAAFLS---VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HTTTE-ECCSS---SSSCEECC---TTCCHHHHHHHHHHHHHH
T ss_pred HHCCe-EEecc---CCCceEee---ccCCHHHHHHHHHHHHHh
Confidence 77764 44332 12234543 468999999999999875
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=108.48 Aligned_cols=226 Identities=10% Similarity=-0.043 Sum_probs=127.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|.. ++.+++|.++ +.. + .+.++++.+++|++|.+.+ +|++.++.+++++++|.+|
T Consensus 137 ~~~g~~---~~~~~~d~~~---l~~--------~------~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y 194 (391)
T 3bwn_A 137 TYVRSG---MYKWEGDAWG---FDK--------K------GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAY 194 (391)
T ss_dssp HTTCBT---TEEEEEESTT---CCC--------C------SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTT
T ss_pred HHcCCe---EEEecCCHHH---cCC--------C------CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCC
Confidence 445665 7788887542 330 1 2557778999999999876 5554223334999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
+... ... .......+++..|++|+++.| .-+|++++.++..+....... .+....
T Consensus 195 ~~~~-----~~~-l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~-~~~~~~----------------- 250 (391)
T 3bwn_A 195 YWPH-----YTP-ITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYI-IVNSIG----------------- 250 (391)
T ss_dssp CSTT-----TSC-CCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHH-HHHHSS-----------------
T ss_pred CCCC-----CCc-cccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHh-cccccC-----------------
Confidence 6321 111 111224678999999988754 225888775554433221110 000000
Q ss_pred CCCcchHHHHHHHHHhC---------HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc-------------eEEEE
Q 046506 163 SRRFRSLKLWFVLRNYG---------VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF-------------AVVCF 220 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-------------~~v~~ 220 (310)
.-.+....+..+++... ...++++.++..++.+++.+.|++++++++..+... ..+.+
T Consensus 251 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~ 330 (391)
T 3bwn_A 251 VSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWL 330 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEE
T ss_pred CCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEe
Confidence 00011122223333210 245778888889999999999998888876532211 13445
Q ss_pred EEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 221 RVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.+... +.+...+.+.|.....+.... +.+.+|+|+. +++++++.++++|++
T Consensus 331 ~~~~~-------------------------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~---~~~e~i~~~~~~L~~ 382 (391)
T 3bwn_A 331 GTKEE-------------------------TDLVSELRRHKVMSRAGERCGSDKKHVRVSML---SREDVFNVFLERLAN 382 (391)
T ss_dssp EESSS-------------------------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC---SCHHHHHHHHHHHHS
T ss_pred cCCcH-------------------------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec---CCHHHHHHHHHHHHH
Confidence 55421 134445556665443322222 2568999965 479999999999987
Q ss_pred HHHH
Q 046506 300 HLEA 303 (310)
Q Consensus 300 ~~~~ 303 (310)
+++.
T Consensus 383 ~~~~ 386 (391)
T 3bwn_A 383 MKLI 386 (391)
T ss_dssp CC--
T ss_pred HHHh
Confidence 7643
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-09 Score=99.78 Aligned_cols=233 Identities=8% Similarity=-0.011 Sum_probs=128.5
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
-|++++++.|.+... ....|++.-...+.|.+.| +++|.++|++||++|++|.++.+ ........-..++
T Consensus 205 nd~~~l~~~l~~~~~---~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv- 278 (454)
T 4ao9_A 205 NDAQTARAQIERHGP---EIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGI- 278 (454)
T ss_dssp TCHHHHHHHHHHTGG---GEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTC-
T ss_pred chHHHHHHHHhhcCC---ceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCC-
Confidence 367999999987533 2456666666677898888 99999999999999999999963 2222211111233
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|.+++ .|.+++....|.+..+.+ .. +.+... ..+... + ++ .+-+..+.+..++|+.+..
T Consensus 279 ~PDi~t~--gK~lggG~Piga~~~~~e-i~-~~~~~~~~~~~h~-~------------T~-~gnPla~AAala~L~~l~~ 340 (454)
T 4ao9_A 279 RSDLTTL--GKYIGGGMSFGAFGGRAD-VM-ALFDPRTGPLAHS-G------------TF-NNNVMTMAAGYAGLTKLFT 340 (454)
T ss_dssp CCSEEEE--EGGGGTTSSCEEEEECHH-HH-GGGCTTTCSCCCC-C------------TT-TTCHHHHHHHHHHHHHTSC
T ss_pred CCcEEEe--ccccCCCCcceeeeeHHH-HH-HHHhhccCCcccc-C------------CC-CCCHHHHHHHHHHHHHHhc
Confidence 3788766 577776666777776644 33 332111 011100 0 11 1112233444556665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCe--EEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSD---KRF--EVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~---~~~--~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
+ +..++..++.++|+++|+++ .++ ++.+ ...++.+.+....+.. .......+ ..+...+..
T Consensus 341 ~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg--~G~m~gi~f~~~~~~~-----~~~~~~~d----~~~~~~~~~ 406 (454)
T 4ao9_A 341 P---EAAGALAERGEALRARLNALCANEGVAMQFTG--IGSLMNAHFVQGDVRS-----SEDLAAVD----GRLRQLLFF 406 (454)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE--ETTEEEEESCCSCCCS-----GGGGTTCC----HHHHHHHHH
T ss_pred c---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee--eceEEEEEEecCCCCC-----HHHHHhhh----HHHHHHHHH
Confidence 3 34556666777777776542 011 1211 1234444443321100 00000011 223345666
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
.|.++|. ++.|. +.+.+| .-.|++|||+++++|++++.+..
T Consensus 407 ~ll~~Gv-~~~p~-----~~~~~s---~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 407 HLLNEDI-YSSPR-----GFVVLS---LPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp HHHHTTE-ECCTT-----CEEECC---TTCCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHCCE-EEcCC-----CCEEEe---CCCCHHHHHHHHHHHHHHHHhcc
Confidence 7778874 44332 223333 23689999999999999998753
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-09 Score=97.72 Aligned_cols=234 Identities=13% Similarity=0.032 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHH--cCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCC
Q 046506 27 SPDSLMAKINSDVE--AGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 100 (310)
Q Consensus 27 d~~~Le~~i~~~~~--~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~ 100 (310)
+.+.+++.+..... .+.....+++.-.....|.+.| +++|.++|++||++|++|..+.++......+.--..++
T Consensus 207 ~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv 286 (456)
T 4atq_A 207 GAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV 286 (456)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC
Confidence 34555555543211 1112456666666666777755 99999999999999999999977544443222112234
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|+++++ |.+++....|.+..+++ .. +.+ .+..... ++ ++-+..+++..++++.+..
T Consensus 287 -~PDivt~g--K~lggg~P~~av~~~~~-i~-~~~--~~~~~~~--------------Tf-~gnpla~aaala~L~~i~~ 344 (456)
T 4atq_A 287 -VPDIITMA--KGIAGGLPLSAITGRAD-LL-DAV--HPGGLGG--------------TY-GGNPVACAAALAAIDTMEQ 344 (456)
T ss_dssp -CCSEEEEC--GGGGTTSSCEEEEEEHH-HH-TTS--CTTSSCC--------------SS-SSCHHHHHHHHHHHHHHHH
T ss_pred -CCchhhhh--hcccCcCCceeeEecHH-HH-hcc--cccCCCC--------------CC-CCChHHHHhhHHHHHHHhh
Confidence 37998875 77776666788877755 22 221 1111111 11 1112233444455555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC----CC--eEEecCC--CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVGSD----KR--FEVVFPR--HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRE 252 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~~~----~~--~~v~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (310)
++ +.++..++.+++.++|+++ +. -.++... ...++.+.+..... ..+ + ......
T Consensus 345 ~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~----------~~~-~----~~~~~~ 406 (456)
T 4atq_A 345 HD---LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGS----------KEP-N----AELTKA 406 (456)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTS----------CCB-C----HHHHHH
T ss_pred cc---HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCC----------CCc-C----HHHHHH
Confidence 33 4455555666666655542 11 1122211 12344555543210 000 1 334467
Q ss_pred HHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 253 LLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 253 l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+...+.++|.+..... ....+||+++. ...|++++|.+++.|.+.++.
T Consensus 407 v~~~~~~~Gvl~~~~g--~~~~~irl~Pp-L~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 407 VAAACLKEGVIILTCG--TYGNVIRLLPP-LVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHTTEECEEEC--TTSCEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecC--CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 7888888886433221 12468999955 568999999999999988764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-10 Score=105.46 Aligned_cols=237 Identities=13% Similarity=0.084 Sum_probs=134.0
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccCC---hHHHHHHHHHhCcEEE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVDT---LKPLCDVAKQFGIWVH 78 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~p---l~~I~~l~~~~g~~l~ 78 (310)
++..|.. ++.+|..+.+++.+|+++|++++++... +.++++..+ +|++|.+.+ +++|+++|++||++++
T Consensus 139 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~~~----~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi 211 (405)
T 3k7y_A 139 IESRGFN---LKYINFFDYNLIDINYDLFLNDLRNIPN----GSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVII 211 (405)
T ss_dssp HHTTTCE---EEEECCEETTTTEECHHHHHHHHHHSCS----SCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHcCCe---EEEEeccccccCCcCHHHHHHHHHhCCC----CeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEE
Confidence 3456666 8999983222478999999999976311 235555544 699999866 6678899999999999
Q ss_pred eecccccccccC-h----hhhhhhcCCCCCCeeeeeccccccc-ccceEEEEE--eCchhHHhhh---cc--CCcccccc
Q 046506 79 VDAAYAGSACIC-P----EFRHFIDGVEGADSFSLNAHKWFFT-TLDCCCLWV--KDPSDLVNSL---ST--NPEYLKNK 145 (310)
Q Consensus 79 vD~a~~~~~~~~-~----~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~v--~~~~~~~~~~---~~--~~~y~~~~ 145 (310)
+|.++....... + ....... ...--++..|+.|.++. ..-+|++++ .+++.+.+.. .. ...+....
T Consensus 212 ~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (405)
T 3k7y_A 212 FDIAYQGFGHTNLEEDVLLIRKFEE-KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPV 290 (405)
T ss_dssp EEESCTTTSSSSTTGGGHHHHHHHT-TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred EecCcccccCCCcccchHHHHHHHh-cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCc
Confidence 999986544321 1 0111111 11112456899999984 456787754 3443322111 00 00110000
Q ss_pred ccccccccCCCCceeccCCCcchHHHHHHHHH--hC---HHHHHHHHHHHHHHHHHHHHHHc----CCC---CeEEecCC
Q 046506 146 ATESKQVVDYKDWQITLSRRFRSLKLWFVLRN--YG---VANLRHFLRSHVNMAKLFERLVG----SDK---RFEVVFPR 213 (310)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~---~~~~~~~~~~~~~~a~~l~~~L~----~~~---~~~v~~~~ 213 (310)
.+.+..+..++.. +. .+.+..+.++..+..+.+.+.|+ ++. ++++. ++
T Consensus 291 -------------------~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~-~p 350 (405)
T 3k7y_A 291 -------------------IHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVY-KK 350 (405)
T ss_dssp -------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGG-SS
T ss_pred -------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccc-cC
Confidence 0111111222221 11 12244555667888888999998 652 13433 45
Q ss_pred CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHH
Q 046506 214 HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVA 293 (310)
Q Consensus 214 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~l 293 (310)
+.+.+.|.-.+ .+..++| ++..+++.|. . |||+.. .++++|+.+
T Consensus 351 ~gg~f~~~~l~--------------------------~~~~~~L-~~~gV~v~p~----~---Ris~a~--~~~~~i~~~ 394 (405)
T 3k7y_A 351 QRGLFSFVPLL--------------------------AKIAEHL-KTHHIYIINN----G---RINVSG--ITKNNVDYI 394 (405)
T ss_dssp CCSSEEECGGG--------------------------GGGTTTT-TTTTEECCTT----S---EEEGGG--CCTTHHHHH
T ss_pred CceEEEecCCC--------------------------HHHHHHH-HHCCEeecCC----C---eEEEec--cCHHHHHHH
Confidence 55544441111 0223455 4444555542 2 999763 678899999
Q ss_pred HHHHHHHHHH
Q 046506 294 WTVVQEHLEA 303 (310)
Q Consensus 294 i~~l~~~~~~ 303 (310)
+++|++++.+
T Consensus 395 ~~~i~~~~~~ 404 (405)
T 3k7y_A 395 ADKICLSLSQ 404 (405)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-11 Score=114.93 Aligned_cols=235 Identities=8% Similarity=-0.054 Sum_probs=128.2
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
-|+++|+++|++... .+.+|++....+++|.+.| +++|+++|++||+++++|++++ + .......-...++
T Consensus 218 ~d~~~l~~~l~~~~~---~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv- 291 (465)
T 2yky_A 218 NDVEGTADLLKRHGH---DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGI- 291 (465)
Confidence 368999999974211 1345666665666898777 9999999999999999999998 4 2221110000111
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhcc---CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHh
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLST---NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (310)
..|++ +..|++++....|+++.+++ .+ +.+.. .+-+... ++ ++-+....+..++++.+
T Consensus 292 ~pDi~--t~sK~lg~G~piG~v~~~~~-i~-~~l~~~~~g~~~~~~--------------T~-~~npla~aAa~aaL~~l 352 (465)
T 2yky_A 292 SADLT--TLGKYIGGGMSFGAFGGRRD-LM-ERFDPARDGAFAHAG--------------TF-NNNILTMSAGHAALTQI 352 (465)
Confidence 25665 45699987555777665543 33 22211 0001111 01 11112233334455544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEec--CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 179 GVANLRHFLRSHVNMAKLFERLVGSDK-RFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
.. +.+.++..++.++++++|.++. ...+.. +....++.+.+....... +......+ ......+.+
T Consensus 353 ~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~-----~~~~~~~d----~~~~~~~~~ 420 (465)
T 2yky_A 353 YT---RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRS-----AGDVRAAD----QQLKELFFF 420 (465)
Confidence 33 3467777788888888887641 222211 223455666554310000 00000000 112346677
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.|.++|.+.. +.... . ++ ...|++||++++++|++.+..++.
T Consensus 421 ~ll~~GV~v~-p~~~~---~--~s---~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 421 HMLRKGIYLA-PRGMY---A--LS---LEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 7777775443 32111 1 33 457899999999999998877643
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=94.87 Aligned_cols=241 Identities=8% Similarity=-0.011 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 29 ~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
+++++.|.+... .....+++.-.....|.+.| +++|.++|++||++|++|..+.++......+.-...++ ..|
T Consensus 223 ~~l~~~i~~~~~--~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PD 299 (473)
T 4e3q_A 223 RELEETIQREGA--DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPD 299 (473)
T ss_dssp HHHHHHHHHHCG--GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCS
T ss_pred HHHHHHHHhhCC--CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCC
Confidence 456666654321 12445666666666677655 89999999999999999999987654443222112233 379
Q ss_pred eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 105 SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 105 ~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++++ .|.+++. ...|.+.++++ .. +.+........... .-.++ ++-+..+.+..++++.+.+
T Consensus 300 i~t~--~K~l~gG~~Pl~av~~~~~-i~-~~~~~~~~~~~~~~---------hg~T~-~Gnpla~Aaala~L~~i~~--- 362 (473)
T 4e3q_A 300 AIIS--SKNLTAGFFPMGAVILGPE-LS-KRLETAIEAIEEFP---------HGFTA-SGHPVGCAIALKAIDVVMN--- 362 (473)
T ss_dssp EEEE--CGGGGTTSSCCEEEEECHH-HH-HHHHHHHHHHSCCC---------CCCTT-TTCHHHHHHHHHHHHHHHH---
T ss_pred hHHh--cccccCCCCCcccccccHH-HH-HHhccccccccccc---------cCCCC-CCCcchhhhhhhhhhhhcc---
Confidence 8876 4877654 55777777655 22 22210000000000 00000 1111222333444444433
Q ss_pred HHHHHHHHHHHHHHHHHHcC---CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 184 RHFLRSHVNMAKLFERLVGS---DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~---~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
+...++..++.++|+++|++ .|.+.=+.. ...++.+.+..... ...+.+. -......+.+.+.++
T Consensus 363 ~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~---------~~~~~~~--~~~~~~~~~~~~~~~ 430 (473)
T 4e3q_A 363 EGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKA---------SKTPFDG--NLSVSERIANTCTDL 430 (473)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTT---------TTBCCCG--GGCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCcc---------ccccccc--cHHHHHHHHHHHHHC
Confidence 34455556677777777654 344421111 12234454432110 0000000 012335677778888
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~~ 307 (310)
|.+. .+. ...+|++++ ...|++|+|.+++++.+.+.++.++
T Consensus 431 Gll~-~~~----g~~i~l~PP-L~it~~eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 431 GLIC-RPL----GQSVVLCPP-FILTEAQMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp TEEC-EEE----TTEEEECCC-TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEE-Eec----CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8543 332 247899855 6789999999999999988876543
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-08 Score=88.26 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=127.5
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
|...+..+.+.+.+|++.+++.+...+. ..++++...++|++|...+ +++|+++|++++++++.|.++......
T Consensus 162 V~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~ 238 (420)
T 4h51_A 162 ICTYAYYDPKTVSLNFEGMKKDILAAPD---GSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASG 238 (420)
T ss_dssp EEEEECEEGGGTEECHHHHHHHHHHSCS---SCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred EEeeccccccccCCCHHHHHHHHhccCC---CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccC
Confidence 4333333223567899999999876532 2446666777899999755 778999999999999999998655432
Q ss_pred Chhhh-----hhhcCCCCCCeeeeecccccccc-cceEEEEEeCchh--HHhhhc-----cCCccccccccccccccCCC
Q 046506 90 CPEFR-----HFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSD--LVNSLS-----TNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 90 ~~~~~-----~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~--~~~~~~-----~~~~y~~~~~~~~~~~~~~~ 156 (310)
..... ..... ..-=+++.|..|.++.+ .-+|++.+..+.. ..+... ....|..
T Consensus 239 ~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~------------- 304 (420)
T 4h51_A 239 SLDTDAYAARLFARR-GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTC------------- 304 (420)
T ss_dssp CHHHHTHHHHHHHHT-TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSS-------------
T ss_pred CcccchHHHHhHHhh-CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCc-------------
Confidence 21110 00111 11224567999987754 3377776654421 111100 0001110
Q ss_pred CceeccCCCcchHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHcCCC--C-eEEecCCCceEEEEEEcCC
Q 046506 157 DWQITLSRRFRSLKLWFVLRNY--------GVANLRHFLRSHVNMAKLFERLVGSDK--R-FEVVFPRHFAVVCFRVSPS 225 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~a~~l~~~L~~~~--~-~~v~~~~~~~~v~~~~~~~ 225 (310)
....+...+...+ ....++.+.++..++.+.+.+.|.+.. + +..+. ++.+.++| .+.
T Consensus 305 ---------~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~-~q~GmF~~--~gl 372 (420)
T 4h51_A 305 ---------PPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVI-NQIGMFSF--LGL 372 (420)
T ss_dssp ---------CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HCCSSEEE--CCC
T ss_pred ---------chHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeec-CCCceEEe--cCc
Confidence 0111111111111 123456677788888888999987651 1 11111 22233333 332
Q ss_pred cchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 226 AVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ .+..+.|.+.| +++.+ +. |||+.. .+++.|+++.++|.++++.+.
T Consensus 373 s------------------------~e~v~~L~e~~-Vy~~~----~g---Ris~Ag--l~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 373 S------------------------KAQCEYCQNHN-IFITV----SG---RANMAG--LTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp C------------------------HHHHHHHHHTT-EECCT----TC---EEEGGG--CCHHHHHHHHHHHHHHHC---
T ss_pred C------------------------HHHHHHHHhCC-EEEcC----CC---EEEecc--CCHHHHHHHHHHHHHHHHHhh
Confidence 1 12234555555 44432 22 999763 688999999999999887654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-09 Score=96.40 Aligned_cols=212 Identities=10% Similarity=-0.027 Sum_probs=121.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
.+|+++|++++++. +.++++++++|++|.+.+ + +++ ++..+.|.++....... ... . ...+
T Consensus 183 ~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~---~~~-~--~~~~ 243 (427)
T 2hox_A 183 AGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTP---IKY-K--ADED 243 (427)
T ss_dssp EEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSC---CCS-C--BCCS
T ss_pred cCCHHHHHHhhcCC------ceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCc---ccc-C--CCce
Confidence 56778888877643 457888899999999988 4 333 56788887763211000 000 0 2478
Q ss_pred eeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHh-----
Q 046506 105 SFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY----- 178 (310)
Q Consensus 105 ~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----- 178 (310)
++..|++|.++.| .-+|+++++++..+....... .+.... .-.+....+..+++..
T Consensus 244 i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~-~~~~~~-----------------~~~~~q~a~~~~L~~~~~~l~ 305 (427)
T 2hox_A 244 ILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-TKNTEG-----------------TPRETQLRSLKVLKEVVAMVK 305 (427)
T ss_dssp EEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-HHHTSS-----------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHH-HhcCCC-----------------CCHHHHHHHHHHhhcchhhhc
Confidence 9999999988754 227888876565443321111 000000 0001111222222211
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEE--ec-----------CCC-ceEEEEEEcCCcchhhhhhhhcccc
Q 046506 179 -----GVANLRHFLRSHVNMAKLFERLVGSDKRFEV--VF-----------PRH-FAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 179 -----~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v--~~-----------~~~-~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
....+++..++..++.+++.+.|++.+++.+ +. .|. ...+.+.+....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~------------- 372 (427)
T 2hox_A 306 TQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE------------- 372 (427)
T ss_dssp HHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG-------------
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcH-------------
Confidence 0123445667788889999999998888876 21 122 344555554310
Q ss_pred chhHHHHHHHHHHHHHHHH-hcCcEEEEE-eEEC-CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESIN-ASGKAYMTH-AVLG-GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~-~~g~~~~~~-~~~~-~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.+. +.|. .+.+ .... +.+++|+|+. +++++++.+++.|++++
T Consensus 373 -----------~~~~~~ll~~~gI-~v~pg~~f~~~~~~~Ris~~---~~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 373 -----------DKDCYQTFQNGRI-NTQNGVGFEASSRYVRLSLI---KTQDDFDQLMYYLKDMV 422 (427)
T ss_dssp -----------GCSHHHHHHHTTE-ECEEGGGGTSCTTEEEEECS---SCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHCCE-EEcCCCccCCCCCEEEEEec---CCHHHHHHHHHHHHHHH
Confidence 13445544 4554 4443 2222 3578999966 37889999999988765
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.7e-09 Score=102.44 Aligned_cols=235 Identities=11% Similarity=0.023 Sum_probs=119.6
Q ss_pred HHHHHHHHHHH--HcCCCcEEEEEecc-CCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 29 DSLMAKINSDV--EAGLIPLFLCATIG-TTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 29 ~~Le~~i~~~~--~~~~~~~~v~~~~~-~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
++|++.|.+.. .....+..|++.-. ....|.+.| +++|.++|++||++|++|.++.++......+.--..++
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv- 655 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC- 655 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-
Confidence 67777776421 11123445555553 566677655 99999999999999999999876543332221111233
Q ss_pred CCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcc-ccccccccccccCCCCceeccCCCcchHHHHHHHHHhC
Q 046506 102 GADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEY-LKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (310)
..|+++ ..|.+++. ...|+++.+++ .. +.+...... .+.. -.++ ++-+..+.+..++++.+.
T Consensus 656 ~PDiit--lsK~L~gG~~Plgav~~~~~-i~-~~~~~~~~~~~~~h-----------g~T~-~g~Pla~Aaala~L~~i~ 719 (831)
T 4a0g_A 656 KPDIAC--FAKLLTGGMVPLAVTLATDA-VF-DSFSGDSKLKALLH-----------GHSY-SAHAMGCATAAKAIQWFK 719 (831)
T ss_dssp CCSEEE--ECGGGGTTSSCCEEEEECHH-HH-HTTCSSCGGGSCCC-----------CCTT-TTCHHHHHHHHHHHHHHH
T ss_pred CCcEEE--EecccccCccCcEEEEECHH-HH-HHHhccccccccee-----------ecCC-cccHHHHHHHHHHHHHHH
Confidence 368765 56988653 24577766544 33 333211000 0000 0010 111122334444555442
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHH
Q 046506 180 VANLRHFLRSHVNM--------AKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNR 251 (310)
Q Consensus 180 ~~~~~~~~~~~~~~--------a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
.+.+ .++..++ .+.+.+.+.+.|.+.-+.. ...++.+.+..... ....-.....
T Consensus 720 ~~~l---~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~--------------~~~~~~~~a~ 781 (831)
T 4a0g_A 720 DPET---NHNITSQGKTLRELWDEELVQQISSHSAVQRVVV-IGTLFALELKADAS--------------NSGYASLYAK 781 (831)
T ss_dssp CTTT---CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-ETTEEEEEEC-----------------------CHHHH
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-cccEEEEEEecCcc--------------ccccchHHHH
Confidence 2222 2222111 1234455556666644322 23345555543100 0000012234
Q ss_pred HHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 252 ELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 252 ~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+.+.+.++|. ++.+. ..+||++++ +.+|++||++++++|.+.++++
T Consensus 782 ~~~~~l~e~Gv-~v~p~----g~~lrl~pp-~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 782 SLLIMLREDGI-FTRPL----GNVIYLMCG-PCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHTTE-ECCCB----TTEEEEECC-TTCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCc-EEEec----CCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 67777888874 44332 368999955 6789999999999999877543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 310 | ||||
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 8e-67 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 1e-21 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-19 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 9e-17 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 3e-05 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 5e-04 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 214 bits (545), Expect = 8e-67
Identities = 116/306 (37%), Positives = 162/306 (52%), Gaps = 26/306 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K + + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE V D RFEV +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ N LLE IN++ K ++ L G + +RFA + E HV +AW ++
Sbjct: 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGL 470
Query: 301 LEALLS 306
LL+
Sbjct: 471 AAELLA 476
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 92.6 bits (229), Expect = 1e-21
Identities = 36/294 (12%), Positives = 74/294 (25%), Gaps = 36/294 (12%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A+ ++++ + P ++ + + + + T +
Sbjct: 166 KFARYWDVELREIPMRPGQ----LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPL 221
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGS-ACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD 119
I +H+DAA G A + + S S + HK+ L
Sbjct: 222 HDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG 281
Query: 120 CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY- 178
C + +D L L N +YL + I SR + +
Sbjct: 282 CGWVIWRDEEALPQELVFNVDYLG---------GQIGTFAINFSRPAGQVIAQYYEFLRL 332
Query: 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA----VVCFRVSPSAVMDKLKTK 234
G + +A + +E + VCF++
Sbjct: 333 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-------- 384
Query: 235 YENSLLSEEERINEFNRELLES-INASGKAYMTHAVLGGIYAIRFAAGATLTEE 287
+ + + L A+ I +R +
Sbjct: 385 ------DPGYTLYDLSERLRLRGWQVP--AFTLGGEATDIVVMRIMCRRGFEMD 430
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 86.5 bits (213), Expect = 1e-19
Identities = 38/312 (12%), Positives = 85/312 (27%), Gaps = 57/312 (18%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA VG++++ + + + + I ++E G P + +T+
Sbjct: 171 KAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRP-CVLSTLTFFPPRNS 227
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + + + + + I ++ AYA E D+ ++ K T +
Sbjct: 228 DDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGG 286
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
++ D + + P + + L + G
Sbjct: 287 GLVYSTDAEFIKEISLSYPGR---------------------ASATPVVNTLVSLLSMGS 325
Query: 181 ANLRHFLRSHVNMAKLFERL---VGSDKRFEVVFPRHFAVVCFRVS--PSAVMDKLKTKY 235
N +++ N KL + L + + + C V+ P + KL
Sbjct: 326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNL- 384
Query: 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWT 295
+G + G + + + A
Sbjct: 385 ----------------------RVTGPRGIKKTDHFGNCYLGTYTHDYIV----MNAAIG 418
Query: 296 VVQEHLEALLSA 307
V E + +S
Sbjct: 419 VRTEDIVNSVSK 430
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.1 bits (191), Expect = 9e-17
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K+ G + + ++ AKI ++ L +T A
Sbjct: 155 KSMVTAGFEPVVIENVLEGDELRT--DLKAVEAKIQELGPEHIL--CLHSTTACFAPRVP 210
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ L + + I V+ AY + C V D+F + K F +
Sbjct: 211 DRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG 270
Query: 121 CCLWVKDPSDL 131
+ + +
Sbjct: 271 AIIAGFNEPFI 281
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 13/139 (9%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD- 61
+ + +K + L I + + T + V
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203
Query: 62 -TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-----------IDGVEGADSFSLN 109
LK + +AK++ I V +D+A + R + + AD +++
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263
Query: 110 AHKWFFTTLDCCCLWVKDP 128
A K + D
Sbjct: 264 AKKDAMVPMGGLLCMKDDS 282
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 39.4 bits (91), Expect = 5e-04
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 13/138 (9%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA--GLIPLFLCATIGTTAITAV 60
A V I + + L I I L + + ++
Sbjct: 135 ATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSM 194
Query: 61 DTLKPLCDVAKQFGIWVHVDAA-YAGSACICPEFRHFIDGV----------EGADSFSLN 109
++ + ++A +GI + DA +A E + V AD +++
Sbjct: 195 ANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254
Query: 110 AHKWFFTTLDCCCLWVKD 127
K + +
Sbjct: 255 GKKDCLVNIGGFLCMNDE 272
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.96 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.95 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.94 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.94 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.93 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.91 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.91 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.91 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.89 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.89 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.88 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.86 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.85 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.84 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.83 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.83 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.81 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.74 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.74 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.73 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.61 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.6 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.59 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.59 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.59 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.58 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.58 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.58 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.58 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.57 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.56 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.56 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.54 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.53 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.53 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.53 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.52 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.5 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.49 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.48 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.48 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.47 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.46 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.45 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.45 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.44 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.44 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.43 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.4 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.4 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.38 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.36 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.35 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.34 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.31 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.3 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.28 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.27 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.26 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.25 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.24 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.23 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.21 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.21 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.19 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.18 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.14 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.13 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.12 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.12 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.1 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.06 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.06 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.05 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.02 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.02 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.98 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 98.98 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.92 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.91 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.85 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.73 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 98.29 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.2e-49 Score=370.65 Aligned_cols=279 Identities=42% Similarity=0.787 Sum_probs=250.1
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEee
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD 80 (310)
|||+++|++ ++.||+|++ +.||+++|+++|++.++.+..|++|+.+.++|.+|.+|||++|+++|++||+|+|||
T Consensus 197 ka~~~lGl~---~~~v~~d~~--~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVD 271 (476)
T d1js3a_ 197 RAGLIGGVK---LKAIPSDGK--FAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (476)
T ss_dssp HHHHHHTCE---EEEECCCTT--SCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCce---EEEeccCCC--CCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEe
Confidence 688999999 999999874 599999999999999998989999999999999999999999999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
||+|++..+++.++....+++.+||+++++|||+++|++||+++++++..+...+...+.|+..........+++.++++
T Consensus 272 AA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
T d1js3a_ 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351 (476)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSS
T ss_pred cccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcccccccccccccccccc
Confidence 99999999999988888899899999999999999999999999999877777777777777665444445567889999
Q ss_pred ccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccc
Q 046506 161 TLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
+++|+++++++|++++.+|.+|+++++++..++++++.+.|++.|+|+++.+|.+++|+|++.+.
T Consensus 352 ~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~--------------- 416 (476)
T d1js3a_ 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416 (476)
T ss_dssp CSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC---------------
T ss_pred ccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+.+++.+.+++.++|.++++++.+++..++|++++|++|+++||+.+++.|+++++++.
T Consensus 417 ------d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp ------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999999999999999999999999999999999998874
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-37 Score=288.68 Aligned_cols=268 Identities=17% Similarity=0.213 Sum_probs=216.1
Q ss_pred CcceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHH------HHhC
Q 046506 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVA------KQFG 74 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~------~~~g 74 (310)
|+|+++|++ ++.||++++ ++.+|+++|+++|+++ +++|++++++|.+|.++|+++|+++| +++|
T Consensus 166 Kaa~~~gi~---~~~v~~~~~-~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~ 235 (450)
T d1pmma_ 166 KFARYWDVE---LREIPMRPG-QLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 235 (450)
T ss_dssp HHHHHTTCE---EEECCCBTT-BCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCC---ceEeeecCC-CCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccC
Confidence 689999998 999999975 5799999999999876 56999999999999999999988875 5579
Q ss_pred cEEEeecccccccccChh-hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccccc
Q 046506 75 IWVHVDAAYAGSACICPE-FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153 (310)
Q Consensus 75 ~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 153 (310)
+|+|||||++++.+++.. ......++.++|++++++|||+++|.|||+++++++..+...+...+.|+...
T Consensus 236 i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~-------- 307 (450)
T d1pmma_ 236 IDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ-------- 307 (450)
T ss_dssp CCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEE--------
T ss_pred cEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCC--------
Confidence 999999999988776532 23344567789999999999999999999999999876655555556666533
Q ss_pred CCCCceeccCCCc-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC----CCceEEEEEEcCCcch
Q 046506 154 DYKDWQITLSRRF-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP----RHFAVVCFRVSPSAVM 228 (310)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~----~~~~~v~~~~~~~~~~ 228 (310)
+..++++++|+. .++++|++++.+|.+|++++.+++.+++++|.+.|++.++++++.+ +..++|+|++.+....
T Consensus 308 -~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~ 386 (450)
T d1pmma_ 308 -IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP 386 (450)
T ss_dssp -EEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCC
T ss_pred -cCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccC
Confidence 234578889885 4567999999999999999999999999999999999999999853 3478899999864210
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe---EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHA---VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
. .. ..++.++|.++|....... ......++|+++. .++|++++|+|++.|++.++.+.
T Consensus 387 ~-----------~~-------~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~-~~~t~e~~d~lv~dl~~~v~~l~ 447 (450)
T d1pmma_ 387 G-----------YT-------LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCR-RGFEMDFAELLLEDYKASLKYLS 447 (450)
T ss_dssp S-----------SC-------HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred C-----------CC-------HHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEcc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 1357788888885432222 2345679999977 58999999999999999999886
Q ss_pred h
Q 046506 306 S 306 (310)
Q Consensus 306 ~ 306 (310)
+
T Consensus 448 ~ 448 (450)
T d1pmma_ 448 D 448 (450)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.7e-28 Score=223.58 Aligned_cols=253 Identities=16% Similarity=0.142 Sum_probs=185.4
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccc
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAY 83 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~ 83 (310)
+..|+. |+++|+++++ .+|++.+++++++. +.+|++++.+|.+|.+.|+++|+++||++|++++||++|
T Consensus 134 ~~~g~~---v~~~~~~~~g--~~~~~~~~~~i~~~------t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q 202 (405)
T d1jf9a_ 134 ARVGAE---LRVIPLNPDG--TLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQ 202 (405)
T ss_dssp HHHTCE---EEEECBCTTS--CBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCcE---EEEECCCCCC--cCCHHHHHHhccCC------cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccce
Confidence 345776 9999999865 89999999998876 459999999999999999999999999999999999999
Q ss_pred ccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccc------ccccccCCCC
Q 046506 84 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKAT------ESKQVVDYKD 157 (310)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~------~~~~~~~~~~ 157 (310)
+.+.++.+.... ++|++++|+|||+ +|.|+|++|+++.. +... ++....... .....+....
T Consensus 203 ~~g~~~id~~~~------~~D~~~~s~hK~~-Gp~G~g~l~v~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (405)
T d1jf9a_ 203 AVMHHPVDVQAL------DCDFYVFSGHKLY-GPTGIGILYVKEAL-LQEM----PPWEGGGSMIATVSLSEGTTWTKAP 270 (405)
T ss_dssp TTTTSCCCHHHH------TCSEEEEEGGGTT-SCSSCEEEEECHHH-HTTC----CCSSCSSSSEEECCTTTCCEECCTT
T ss_pred eccccccchhhc------CCceeeccccccc-cCCCceeeeechhh-hccc----CcccccccccCccccccccccccch
Confidence 999988764331 5999999999995 69999999998652 2221 111111110 0000111122
Q ss_pred ceeccCCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-CceEEEEEEcCCcchhhhhhh
Q 046506 158 WQITLSRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-HFAVVCFRVSPSAVMDKLKTK 234 (310)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~~~~~~~~~~~~~~~~ 234 (310)
..++.|.+ ...+++.++++.+...+++.+.++...+++++.+.+...+.+.+..+. +.++++|.+.+...
T Consensus 271 ~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~~------- 343 (405)
T d1jf9a_ 271 WRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHA------- 343 (405)
T ss_dssp GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCH-------
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCCH-------
Confidence 33444443 234666777777766788999999999999999999999888777653 57899999876421
Q ss_pred hccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 235 YENSLLSEEERINEFNRELLESINASGKAYMTHAV---------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.++...|.+.|+ .++... .+-.+.+|+|++ ++||++|||+++++|+++.+-+
T Consensus 344 ----------------~~~~~~L~~~gI-~v~~G~~c~~~~~~~~~~~g~iRiS~~-~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 344 ----------------YDVGSFLDNYGI-AVRTGHHCAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp ----------------HHHHHHHHHTTE-ECEEECTTCHHHHHHTTCSCEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHCCc-EEEccchhhhhHHHhcCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 345556666664 443221 122468999965 7899999999999999987653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.95 E-value=7.2e-28 Score=220.93 Aligned_cols=252 Identities=10% Similarity=0.102 Sum_probs=186.0
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|+. ++.+|.+.++ ..+++.|+++++++ +.+|++++.++.+|.+.|+++|+++||++|+++|||++|+
T Consensus 135 ~~g~~---v~~~~~~~~~--~~~~~~l~~~~~~~------t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~ 203 (408)
T d1t3ia_ 135 KTGAV---LKFVQLDEQE--SFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQS 203 (408)
T ss_dssp HHCCE---EEEECBCTTS--SBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccCce---Eeeeeccccc--cccHHHhhhccCCC------ceEEEEecccccccccCcHHHHhhhhhccCceeeecccee
Confidence 34665 8999988654 88999999998776 4599999999999999999999999999999999999999
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccc-----cccCCCCce
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESK-----QVVDYKDWQ 159 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~-----~~~~~~~~~ 159 (310)
.+.++.+.... ++|++++++|||+ +|.|+|+++++++.. .. .+++..+...... .........
T Consensus 204 ~g~~~id~~~~------~~D~~~~s~hK~~-gp~G~g~l~v~~~~~-~~----~~p~~~g~~~~~~~~~~~~~~~~~~~r 271 (408)
T d1t3ia_ 204 APHYPLDVQLI------DCDWLVASGHKMC-APTGIGFLYGKEEIL-EA----MPPFFGGGEMIAEVFFDHFTTGELPHK 271 (408)
T ss_dssp TTTSCCCHHHH------TCSEEEEEGGGTT-SCTTCEEEEECHHHH-HH----SCCCSCSTTSEEEECSSCEEECCTTGG
T ss_pred ccccccccccc------CCceEEecccccc-CCCCccccccchhhh-hc----CCceecCCcccccccccccccCCchhh
Confidence 99998875332 5999999999994 689999999987742 11 1333333221100 001112233
Q ss_pred eccCCC-c-chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----CceEEEEEEcCCcchhhhh
Q 046506 160 ITLSRR-F-RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----HFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 160 ~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~~~~~~~~~~~~~~ 232 (310)
++.|.+ + ..+++..+++.+...|.+++.++...+.+++.+.+.+.+++.++++. ..++++|.+.+.+.
T Consensus 272 ~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~----- 346 (408)
T d1t3ia_ 272 FEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHA----- 346 (408)
T ss_dssp GCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCH-----
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCCH-----
Confidence 445544 2 23566677777766788999999999999999999999999988632 36789999876421
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHAV---------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.++...|.++| +.++... .+..+++|||++ ++||++|||+++++|+++++.
T Consensus 347 ------------------~~v~~~L~~~g-I~v~~G~~c~~~~~~~~~~~g~vRiS~~-~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 347 ------------------SDVATMVDQDG-IAIRSGHHCTQPLHRLFDASGSARASLY-FYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp ------------------HHHHHHHHTTT-EECBCSCTTCHHHHHHTTCCCCEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHhhCC-cEEecCcccccHHHHhhcCCccEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 34566676666 4443211 123568999955 789999999999999998865
Q ss_pred H
Q 046506 304 L 304 (310)
Q Consensus 304 ~ 304 (310)
+
T Consensus 407 f 407 (408)
T d1t3ia_ 407 F 407 (408)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1e-27 Score=222.14 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=182.3
Q ss_pred CcceecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe
Q 046506 1 KAAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v 79 (310)
||+.++|++ .+.|++.+ ++.+.+|+++|+++|.+..... +.+|+++++++.+|.++|+++|+++|++||+|+||
T Consensus 155 ~a~~~~g~~---~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~v 229 (445)
T d3bc8a1 155 KSMVTAGFE---PVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 229 (445)
T ss_dssp HHHHHTTCE---EEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHcCCe---eEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEE
Confidence 467788988 66665322 2357999999999998764432 56888999999999999999999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+|++++..+..........+.++|++++++||++++|.|+|++++++...++.... .|...
T Consensus 230 D~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~---~~~~~--------------- 291 (445)
T d3bc8a1 230 NNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGR--------------- 291 (445)
T ss_dssp ECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSC---------------
T ss_pred EccchhhhhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHH---HHhhc---------------
Confidence 999987766554333333334579999999999999999999999998865433211 11111
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCC---CeEEecCCCc-eEEEEEEcCCcchhhhhhhh
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDK---RFEVVFPRHF-AVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~-~~v~~~~~~~~~~~~~~~~~ 235 (310)
+.....+.+|+++..++..++....++..++++++.+.|+++. +..++..+.. ...++.+.....
T Consensus 292 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~-------- 360 (445)
T d3bc8a1 292 ---ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG-------- 360 (445)
T ss_dssp ---BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS--------
T ss_pred ---ccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc--------
Confidence 1123567889999999999999999999999999999987642 4555543332 223333322110
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcE---EEEE--------eEE---------CCEeEEEEEccCCCCCHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKA---YMTH--------AVL---------GGIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~--------~~~---------~~~~~iRis~~~~~~t~edi~~li~ 295 (310)
....+.. ++...|.+.|.. .+.+ ... .....+|++++ .++|+||||++++
T Consensus 361 -----~~~~~~~----~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~-~~~T~eDID~~v~ 430 (445)
T d3bc8a1 361 -----HHDKAVT----QLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAA-IGMKMQDVDLFIK 430 (445)
T ss_dssp -----SSSCHHH----HHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECC-TTCCHHHHHHHHH
T ss_pred -----cCCCCHH----HHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCc-CCCCHHHHHHHHH
Confidence 0111112 233334444321 1110 000 01356899954 7899999999999
Q ss_pred HHHHHHHHHhhccC
Q 046506 296 VVQEHLEALLSASK 309 (310)
Q Consensus 296 ~l~~~~~~~~~~~~ 309 (310)
+|+++++.++|+.+
T Consensus 431 ~L~kilk~~rk~~~ 444 (445)
T d3bc8a1 431 RLDKCLNIVRKEQT 444 (445)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999977654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.94 E-value=5.5e-27 Score=216.61 Aligned_cols=249 Identities=13% Similarity=0.116 Sum_probs=178.5
Q ss_pred CcceecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEe
Q 046506 1 KAAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 1 kaa~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~v 79 (310)
|++.++|++ .+.|++.+ +..+.+|+++|+++|++....+. +.+|+.+.+++..|.++|+++|+++|++||+|+||
T Consensus 171 k~~~~~g~~---~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~-~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~v 246 (434)
T d2z67a1 171 KAVSFVGMN---MRLVETVLDGDRVYVPVEDIENAIKKEIELGN-RPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHII 246 (434)
T ss_dssp HHHHHTTCE---EEEECCEEETTEEECCHHHHHHHHHHHHHTTC-CEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCc---ceEEEeecCCCccCCCHHHHHHHHHhhhhcCC-ceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEE
Confidence 456778887 66665322 23568999999999998776543 34788899999999999999999999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
|+||+++....+...... +..++|++++++||++++|.|+|+++++++..+++.....+ .
T Consensus 247 D~a~g~~~~~~~~~~~~~-~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~---~---------------- 306 (434)
T d2z67a1 247 NGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP---G---------------- 306 (434)
T ss_dssp ECTTTTTCHHHHHHHHHH-HTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSC---S----------------
T ss_pred eccchhhhhhcccccccc-ccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcc---c----------------
Confidence 999987654433322212 22369999999999999999999999998866544321110 0
Q ss_pred eccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.+....+..+|+++..++.+++++..++..++++++++.|+++ .+++++..+....+.+......
T Consensus 307 --~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~~---------- 374 (434)
T d2z67a1 307 --RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDP---------- 374 (434)
T ss_dssp --CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSCH----------
T ss_pred --ccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCCCH----------
Confidence 1112356778999999999999999999999999999998764 4667765555555555444321
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcE---EEEEeE--------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKA---YMTHAV--------LGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~--------~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..+...|.+.|.. ...+.. ......+|++++ .++|+||||+++++|+++
T Consensus 375 --------------~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s-~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 375 --------------VEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAA-IGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp --------------HHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred --------------HHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecC-CCCCHHHHHHHHHHHhcC
Confidence 2455556666632 111110 012467999955 789999999999999863
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.93 E-value=2.6e-26 Score=208.22 Aligned_cols=252 Identities=13% Similarity=0.139 Sum_probs=172.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh----CcEEEee
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF----GIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~----g~~l~vD 80 (310)
..|+. ++++|.+++.......+.+++++++. +.++++++.+|++|.+.|+++|.++||++ |++++||
T Consensus 115 ~~g~~---~~~v~~~~~~~~~~~~~~l~~~i~~~------t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD 185 (381)
T d1elua_ 115 RFGIT---YRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD 185 (381)
T ss_dssp HHCCE---EEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEE
T ss_pred ccccc---ccccccccccccchHHHHHHhhhccc------ccccccccccccccccchhhHHHHHHhhcccccccccccc
Confidence 35676 88998876432222245555555543 56899999999999999999999999985 6999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCcccccccccccc-----ccCC
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ-----VVDY 155 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~-----~~~~ 155 (310)
++|+.+..+.+.. . .++|++++++|||+++|.|+|++++++... ... .|.+.......... ....
T Consensus 186 ~~~~~g~~~~~~~-----~-~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~-~~~---~p~~~~~~~~~~~~~~~~~~~~~ 255 (381)
T d1elua_ 186 GAQSAGSLPLDFS-----R-LEVDYYAFTGHKWFAGPAGVGGLYIHGDCL-GEI---NPTYVGWRSITYGAKGEPTGWAE 255 (381)
T ss_dssp CTTTBTTBCCCTT-----T-SCCSEEEEESSSTTCCCTTCEEEEECTTTG-GGC---CCCSCCTTTEEECTTSCEEEECS
T ss_pred ccccccccccccc-----c-cccccccccccccccccchhhHHHhhHHHH-Hhc---Ccccccccccccccccccccccc
Confidence 9999888776532 1 269999999999999999999999987743 222 23222221110000 0001
Q ss_pred CCceeccCCCc--chHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhh
Q 046506 156 KDWQITLSRRF--RSLKLWFVLRNYGVANL-RHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 156 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~ 230 (310)
....+..+.+. ..+++.++++.+...+. +.+.++..++++++.+.|+++|+++++.+ ++.++++|.+.+..
T Consensus 256 ~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~---- 331 (381)
T d1elua_ 256 GGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL---- 331 (381)
T ss_dssp GGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS----
T ss_pred cccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCC----
Confidence 11111222221 23455566665544443 55678889999999999999999999864 46789999887642
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
. .+++.+.|.++|. .+. .....+++|+|++ ++||++|||+++++|++++
T Consensus 332 -----------~-------~~~i~~~L~~~gi-~v~--~~~~~~~lRis~~-~~nt~edid~ll~~l~e~~ 380 (381)
T d1elua_ 332 -----------G-------HRAIVQKLEEQRI-YLR--TIADPDCIRACCH-YITDEEEINHLLARLADFG 380 (381)
T ss_dssp -----------C-------HHHHHHHHHHTTE-ECE--EETTTTEEEEECC-TTCCHHHHHHHHHHHTTCC
T ss_pred -----------C-------HHHHHHHHHhCCc-EEE--ecCCCCEEEEecC-CCCCHHHHHHHHHHHHhhC
Confidence 1 1356677777774 332 2345678999965 7899999999999998753
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.91 E-value=1e-23 Score=192.25 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=156.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
..++++++++|++. +.+|++++.+|.+|.+.|+++|+++|+++|++++||++|+.+..+.+.... ++|
T Consensus 151 ~~~~~~~~~~i~~~------T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~------~~d 218 (404)
T d1qz9a_ 151 VDSPEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA------GAD 218 (404)
T ss_dssp ESSGGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH------TCS
T ss_pred cccchhHHHhcCCC------ceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccc------cce
Confidence 67788899998776 459999999999999999999999999999999999999999988764332 599
Q ss_pred eeeeecccccccccc-eEEEEEeCchhHHhhhccCCccccccccccccccC----CCCceeccCCC-c-chHHHHHHHHH
Q 046506 105 SFSLNAHKWFFTTLD-CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD----YKDWQITLSRR-F-RSLKLWFVLRN 177 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g-~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~l~~ 177 (310)
++++++|||+++|.| +|++++++. .+ ...................... .....++.+.. . ....+..++..
T Consensus 219 ~~~~s~~K~~~~~~g~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (404)
T d1qz9a_ 219 YAIGCTYKYLNGGPGSQAFVWVSPQ-LC-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDV 296 (404)
T ss_dssp EEEECSSSTTCCCTTCCCEEEECTT-TT-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred EEEEechhhcccCCceEEEEEechh-hh-hhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHH
Confidence 999999999977655 566666544 32 2211111111111100000000 00111111111 1 11223333333
Q ss_pred ---hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC----CceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 178 ---YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR----HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 178 ---~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
.+.+..++......+....+.+.+...++++++++. +.++++|.....
T Consensus 297 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~------------------------- 351 (404)
T d1qz9a_ 297 FAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEG------------------------- 351 (404)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTH-------------------------
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCCH-------------------------
Confidence 344555666666666666677777778899998753 367888877642
Q ss_pred HHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 251 RELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 251 ~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.++.+.|.++|. .+. ....+.||||+.|.|||++||++++++|++++++
T Consensus 352 ~~v~~~L~~~gi-~~~---~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 352 YAVIQALIDRGV-IGD---YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHHHHHHHTTTE-ECE---EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-EEe---ecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 357777887774 322 2234689999877789999999999999999865
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-24 Score=197.57 Aligned_cols=257 Identities=11% Similarity=0.030 Sum_probs=171.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
+..++.++. ..+|.+.+++.+...+ +.++++++.+|.+|.+.|+++|+++||+||++++||++|+.+..+.+.
T Consensus 120 ~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~ 192 (388)
T d1h0ca_ 120 VHPMTKDPG--GHYTLQEVEEGLAQHK-----PVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM 192 (388)
T ss_dssp CBCCBCCTT--CCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCT
T ss_pred ccccccCCc--cccchHHHHHHhccCC-----cceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccc
Confidence 445555543 3789999988887643 458999999999999999999999999999999999999999887753
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCC----ccccccccccccccCCCCceeccCCCc--
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNP----EYLKNKATESKQVVDYKDWQITLSRRF-- 166 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~-- 166 (310)
.. .++|++++++|||+++|.|+|++++++.. +.......+ .|+..... ..............+.+.
T Consensus 193 ~~------~~~D~~~~s~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~~~ 264 (388)
T d1h0ca_ 193 DR------QGIDILYSGSQKALNAPPGTSLISFSDKA-KKKMYSRKTKPFSFYLDIKWL-ANFWGCDDQPRMYHHTIPVI 264 (388)
T ss_dssp TT------TTCSEEEEESSSTTCCCTTCEEEEECHHH-HHHHTTCSSCCSCSTTCHHHH-HHHTTCSSSCCCCCSCCCHH
T ss_pred cc------cccceecccccccccCCCceEEEeecHHH-HHhhhhccccccccccccchh-hhhhhhccccccccccccHH
Confidence 22 25999999999999999999999988663 233221111 11100000 000000001111112121
Q ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CC---CceEEEEEEcCCcchhhhhhhhccccchh
Q 046506 167 RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PR---HFAVVCFRVSPSAVMDKLKTKYENSLLSE 242 (310)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
...++.+++..+...|++.+.++..++++++++.+.+. ++.++. .+ ..++++|.++..- +
T Consensus 265 ~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~~~---------------~ 328 (388)
T d1h0ca_ 265 SLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAVPAGY---------------D 328 (388)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC---------------C
T ss_pred HHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEECCCCC---------------C
Confidence 22345556666666778899999999999999999876 554443 22 2457788875420 0
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 046506 243 EERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSA 307 (310)
Q Consensus 243 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~~ 307 (310)
..++.+.|.+++.+.+..... .....||||.+++++|.||||+++++|+++++++.|+
T Consensus 329 -------~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 329 -------WRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp -------HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 135666666554455443211 1235899995457899999999999999999998653
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=5e-24 Score=193.84 Aligned_cols=244 Identities=13% Similarity=0.130 Sum_probs=162.6
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|+. ++.+|.+++ +.+|+++++++|+++ +.+|++++.+|.+|.+.|+++|+++||+||++++||++|+.
T Consensus 116 ~G~~---v~~v~~~~~--~~~d~~~~~~~i~~~------T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~ 184 (391)
T d1p3wa_ 116 EGFE---VTYLAPQRN--GIIDLKELEAAMRDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSV 184 (391)
T ss_dssp TTCE---EEEECCCTT--SCCCHHHHHHHCCTT------EEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTB
T ss_pred cCCE---EEEeCCCCC--CeEcHHHHHHhCCCC------cEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeecccc
Confidence 4665 999999864 489999999999876 45899999999999999999999999999999999999999
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+..+.+... .++|++++++|||+ +|.|+|++++++... .. ..+.+..+... .....+..
T Consensus 185 g~~~~d~~~------~~~D~~~~s~~k~~-g~~g~g~~~~~~~~~-~~---~~~~~~gg~~~----------~~~~~~~~ 243 (391)
T d1p3wa_ 185 GKLPIDLSQ------LKVDLMSFSGHKIY-GPKGIGALYVRRKPR-VR---IEAQMHGGGHE----------RGMRSGTL 243 (391)
T ss_dssp TTBCCCTTT------SCCSEEEEESTTTT-SCSSCEEEEECBTTB-CC---CCCSSCSSCTT----------TTTSCSCC
T ss_pred CCccccchh------cccccccccccccc-CCCceEEEEEecchh-cc---cCCcccCCccc----------cCcccCcc
Confidence 988765322 25999999999995 688999999987632 11 11222211110 01111111
Q ss_pred c--chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhccccc
Q 046506 166 F--RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYENSLL 240 (310)
Q Consensus 166 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (310)
. ...++...+.. ..+......++..++..++.++|.++++..+.... ...+++|......
T Consensus 244 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 308 (391)
T d1p3wa_ 244 PVHQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE-------------- 308 (391)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSC--------------
T ss_pred hhhhhhhhhhhhhH-HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCC--------------
Confidence 1 11222222222 23445566678888999999999998877764322 2456666665532
Q ss_pred hhHHHHHHHHHHHHHHHH----hcCcEEEEEeEEC-------------CEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 241 SEEERINEFNRELLESIN----ASGKAYMTHAVLG-------------GIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~~~-------------~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
. ..+...+. +.|..+..+.... ..+.||+|++ ++||+||||+++++|++++++
T Consensus 309 -~--------~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~-~~nt~edid~l~~~l~~~l~~ 378 (391)
T d1p3wa_ 309 -G--------ESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKSIGR 378 (391)
T ss_dssp -H--------HHHHHHTTTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred -h--------HHHHHHhCCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecC-CCCCHHHHHHHHHHHHHHHHH
Confidence 1 12222232 2232222221110 1257999955 789999999999999999998
Q ss_pred Hhh
Q 046506 304 LLS 306 (310)
Q Consensus 304 ~~~ 306 (310)
+++
T Consensus 379 lr~ 381 (391)
T d1p3wa_ 379 LRD 381 (391)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=1.7e-22 Score=181.21 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=158.4
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
+...|.. ++.+|.++.+++.+|+++++++|++.++.. .+.+|++++++|++|.+.|+++|+++|++||+++|+|+|
T Consensus 103 ~~~~g~~---v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a 178 (364)
T d2e7ja1 103 AERAGLN---IALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA 178 (364)
T ss_dssp HHHTTCE---EEEECCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECT
T ss_pred HHhccce---EEEeeeccccccccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeecchhheeccccccchhhcccc
Confidence 3456776 999999876678999999999999876532 356788899999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|+.+..+.+.... ++|++++|+||++++|.++|+++++++ .....+.....+..... .+.+
T Consensus 179 ~~~g~~~~~~~~~------g~D~~~~S~~K~~~~~g~~g~l~~~~~-~~~~~~~~~~~~~~~~~------------~~~~ 239 (364)
T d2e7ja1 179 YAIGRMPVSLKEI------GADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKEV------------ELLG 239 (364)
T ss_dssp TTBTTBCCCHHHH------TCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSBG------------GGTT
T ss_pred chhhhhhhccccc------ccceeeeccccccCCCCCEEEEEECHH-HHHHHHhhccccCcccc------------cccc
Confidence 9988776543221 489999999999999988998887765 33232222222222111 1111
Q ss_pred CCC--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 163 SRR--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 163 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
+.. .....+.+++... .+.. +.+++..++++++.+.|.++ ++.+++. +....+.+...+...
T Consensus 240 ~~~~~~~~~~~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~------------ 304 (364)
T d2e7ja1 240 CTARGATIITLMASFPHV-RERI-KRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLY------------ 304 (364)
T ss_dssp CCCCSHHHHHHHHHHHHH-HHHG-GGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHH------------
T ss_pred cccchhHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchH------------
Confidence 111 1112223333222 1111 22334456788899999887 6777653 222223333322100
Q ss_pred chhH-HHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 240 LSEE-ERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 240 ~~~~-~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+. .........+...+...+..... .+....+|++ + +.+|+|||++++++|++++++
T Consensus 305 --~~~~~~~~~~~~~~~~l~~~~~~~~~---~g~~~~~~~~-~-~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 305 --EISKKAKGGRFFLYRELKSRKIHGIK---PGLTRYFKLS-T-YGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp --HHHHHSSSGGGHHHHHHHHTTEECSC---TTCCSEEEEE-C-TTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhhccchHHHHHHHhcCCceec---CCCcceEEEe-c-cCCCHHHHHHHHHHHHHHHHH
Confidence 00 00000001223334444432211 1223456776 3 568999999999999999875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=6.8e-23 Score=183.90 Aligned_cols=224 Identities=8% Similarity=0.006 Sum_probs=146.1
Q ss_pred cEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEE
Q 046506 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLW 124 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~ 124 (310)
+.++++++.+|.+|.+.|+++|+++||+||++++||++|+.+..+.+... .++|++++++|||+++|.|.|+++
T Consensus 128 ~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~------~~~D~~~~s~~K~l~gp~G~g~l~ 201 (361)
T d1m32a_ 128 ISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAA------LHIDYLISSANKCIQGVPGFAFVI 201 (361)
T ss_dssp CCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTT------TTCSEEEEESSSTTCCCSSEEEEE
T ss_pred ccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccc------cccceEEeeecccccCCCCceEEE
Confidence 56899999999999999999999999999999999999999998876422 269999999999999999999999
Q ss_pred EeCchhHHhhhccCCcccccccccc--ccccCCCCceeccCCC-cchHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHH
Q 046506 125 VKDPSDLVNSLSTNPEYLKNKATES--KQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVA-NLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 125 v~~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~l~~~ 200 (310)
++++.. .+.- +.......... ............++.. ...+++..++.....+ +.+...++...+++.+.+.
T Consensus 202 ~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (361)
T d1m32a_ 202 AREQKL-AACK---GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAG 277 (361)
T ss_dssp EEHHHH-TTCT---TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred echhhh-hhhc---cccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 987632 2211 11111110000 0000000000011111 1223444455444344 4566677888888999999
Q ss_pred HcCCCCeEEecCC--C-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEE
Q 046506 201 VGSDKRFEVVFPR--H-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIR 277 (310)
Q Consensus 201 L~~~~~~~v~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iR 277 (310)
+... ++.+..++ + ..+++|..+... .....++.+.|.++|.. +........+.+|
T Consensus 278 ~~~~-g~~~~~~~~~rs~~v~~~~~p~~~--------------------~~~~~~~~~~l~~~gi~-i~~G~~~~~~~~R 335 (361)
T d1m32a_ 278 MRAL-GFNTLLDDELHSPIITAFYSPEDP--------------------QYRFSEFYRRLKEQGFV-IYPGKVSQSDCFR 335 (361)
T ss_dssp HHHT-TCCBSSCGGGBCSSEEEEECCCCT--------------------TCCHHHHHHHHHHTTEE-CEECCCSSSCEEE
T ss_pred Hhhc-CCcccCChhhcCCcEEEEECCCCC--------------------CCCHHHHHHHHHHCCcE-EECCCcCCCCEEE
Confidence 8876 56554433 2 345667654321 01124577788888754 3333333456899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHH
Q 046506 278 FAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 278 is~~~~~~t~edi~~li~~l~~~~ 301 (310)
||.++ +++++||++++++|++++
T Consensus 336 is~~g-~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 336 IGNIG-EVYAADITALLTAIRTAM 358 (361)
T ss_dssp EECCS-SCCHHHHHHHHHHHHHHC
T ss_pred EeCCC-CCCHHHHHHHHHHHHHHc
Confidence 99554 689999999999999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=5.4e-22 Score=179.24 Aligned_cols=241 Identities=12% Similarity=0.068 Sum_probs=159.2
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeecc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDAA 82 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~a 82 (310)
..|++ |+.||++++ +.+|+++++++|+++ +.+|++++.++.+|.+.|+++++++|+++ |+.++||++
T Consensus 111 ~~g~~---v~~vp~~~~--~~id~~~l~~~i~~~------t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~ 179 (376)
T d1eg5a_ 111 MKGFK---VKYVPVDSR--GVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179 (376)
T ss_dssp HTTCE---EEECCBCTT--SCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECT
T ss_pred hcCCE---EEEEcCCCC--CeECHHHHHHhcCCC------ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEee
Confidence 34776 999999975 489999999999876 45999999999999999999999999776 899999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
|+.+.++.+... .++|++++++|||+ +|.|+|++++++...+ .|.+....... ....
T Consensus 180 q~~g~~~~d~~~------~~~D~~~~s~~K~~-gp~G~~~l~~~~~~~~------~p~~~g~~~~~----------~~~~ 236 (376)
T d1eg5a_ 180 QTIGKIPFSLEK------LEVDYASFSAHKFH-GPKGVGITYIRKGVPI------RPLIHGGGQER----------GLRS 236 (376)
T ss_dssp TTTTTSCCCCTT------TCCSEEEEEGGGGT-SCTTCEEEEECTTSCC------CCSBCSSCTTT----------TTBC
T ss_pred eccccccccccc------cCccceecccceee-cCCCceeEEeccCccc------CCcccCCCCcc----------cccC
Confidence 999998876322 25999999999995 7999999999876322 22222211100 0111
Q ss_pred CCC-cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--CCceEEEEEEcCCcchhhhhhhhcccc
Q 046506 163 SRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--RHFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
+.. .......................+...+.+++.+.|.......+... ....++.+.+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 303 (376)
T d1eg5a_ 237 GTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIR------------- 303 (376)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCC-------------
T ss_pred CcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCCC-------------
Confidence 111 11111111111222334555666667778888998887644433222 23556777776542
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEE-----EEEeEEC--------C------EeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAY-----MTHAVLG--------G------IYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~-----~~~~~~~--------~------~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
...+...|.++|+.. |.+.... + .+.||+|++ ++||+||||+++++|+++
T Consensus 304 ----------~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~-~ynt~edid~l~~~L~~i 372 (376)
T d1eg5a_ 304 ----------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEEI 372 (376)
T ss_dssp ----------HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 134455555555321 1111110 1 357999955 789999999999999998
Q ss_pred HHH
Q 046506 301 LEA 303 (310)
Q Consensus 301 ~~~ 303 (310)
++-
T Consensus 373 v~~ 375 (376)
T d1eg5a_ 373 LSF 375 (376)
T ss_dssp HHH
T ss_pred Hhh
Confidence 763
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=4.8e-22 Score=179.89 Aligned_cols=255 Identities=12% Similarity=0.033 Sum_probs=171.6
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC--cEEEeecccccccccC
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG--IWVHVDAAYAGSACIC 90 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g--~~l~vD~a~~~~~~~~ 90 (310)
+..+...+.+ ...+++.+++++...+ +.++++++.++.+|...|+++++++|++++ +++|||++|+++..+.
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pi 183 (382)
T d2bkwa1 110 VDVVRPLKIG-ESVPLELITEKLSQNS-----YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEF 183 (382)
T ss_dssp EEEECCSSTT-SCCCHHHHHHHHHHSC-----CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCC
T ss_pred cccccccCCC-CccchhHHHHHhhhcc-----chheeeeeccccccccccchhhhhhccccccceeeeeecccccccccc
Confidence 5555544332 3688899998887642 458999999999999999999999998875 9999999999999988
Q ss_pred hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhc-----cCCccccccccccccccCC-CCceeccCC
Q 046506 91 PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS-----TNPEYLKNKATESKQVVDY-KDWQITLSR 164 (310)
Q Consensus 91 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~-----~~~~y~~~~~~~~~~~~~~-~~~~~~~~~ 164 (310)
+... .++|++++++|||+++|.|+|+++++++.. .+... ....|.............+ .......+.
T Consensus 184 d~~~------~giD~~~~s~~K~l~gP~G~g~l~vs~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T 256 (382)
T d2bkwa1 184 EFDE------WGVDFALTASQKAIGAPAGLSISLCSSRFM-DYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFAT 256 (382)
T ss_dssp CTTT------TTCSEEEEESSSTTCCCSCEEEEEECHHHH-HHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSC
T ss_pred cccc------cCeeEEeecccccCcCCCchhhhhccHHHH-hhhhhcccCCCcccchhhhhhhhhhhhcccccccccccC
Confidence 7432 269999999999999999999999987742 22211 1111211110000000000 000001111
Q ss_pred C--cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC--C---CceEEEEEEcCCcchhhhhhhhcc
Q 046506 165 R--FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP--R---HFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 165 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~---~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
+ ....++..+++.+..++.+.+.++..++++++++.+.+..++..+.. + ...+++|.....
T Consensus 257 p~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~------------ 324 (382)
T d2bkwa1 257 PPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADP------------ 324 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCH------------
T ss_pred CcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCH------------
Confidence 2 12356667888887789999999999999999999988777766542 1 134556665432
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
.++.+.|.+.|. .+..... .+...+||+.+.+.++++||++++++|+.+...|++
T Consensus 325 -------------~~~~~~L~~~gi-~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 325 -------------PDVIAFLKSHGV-VIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp -------------HHHHHHHHHTTE-ECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred -------------HHHHHHHHHCCe-EEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 345566666664 4433222 235689999665677889999999999888777754
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.85 E-value=2.9e-21 Score=174.07 Aligned_cols=252 Identities=10% Similarity=0.004 Sum_probs=159.3
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
+..+....+. ..+.+..+....... +.++++++.+|.+|.+.|+++|+++||++|+.++||++|+.+..+.+.
T Consensus 119 ~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~ 191 (377)
T d1vjoa_ 119 VRTISKPWGE--VFSLEELRTALETHR-----PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFL 191 (377)
T ss_dssp EEEEECCTTC--CCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCT
T ss_pred ccccccCCCC--cccchhhhhhhhcCc-----ceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcc
Confidence 4445544432 455565565554432 458899999999999999999999999999999999999988877653
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc--chHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF--RSLK 170 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 170 (310)
.. .++|++++++|||+++|.|+|++++++.. +........+......................+.+. ....
T Consensus 192 ~~------~~~d~~~~s~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (377)
T d1vjoa_ 192 DA------WGVDLAYSCSQKGLGCSPGASPFTMSSRA-IEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYA 264 (377)
T ss_dssp TT------TTCSEEECCSSSTTCSCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHH
T ss_pred cc------cccceeeecccccccCCCEEEEecchhhH-HhhhhccCCCCcceeeccchhhhccCcccccccccceechhh
Confidence 22 25999999999999999999999887653 333322221111110000000000000011111111 1122
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
+..+...+...+.+.+.++..++++++.+.+.+. ++.++.++ ...+++|.++.. . +
T Consensus 265 l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~-~--------------~----- 323 (377)
T d1vjoa_ 265 LREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDG-V--------------D----- 323 (377)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTT-C--------------C-----
T ss_pred hHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCC-C--------------C-----
Confidence 3334444556778899999999999999999875 66555433 234667776431 0 0
Q ss_pred HHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
..++.+.|.+++.+.+..... ...+.+|+|.+++++|+||||+++++|++++
T Consensus 324 --~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 324 --GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp --HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 145666665553444433211 1345899996567889999999999999876
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=4.5e-20 Score=167.97 Aligned_cols=235 Identities=14% Similarity=0.055 Sum_probs=162.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh--hhhhhcCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE--FRHFIDGVEG 102 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~--~~~~~~~~~~ 102 (310)
..|++++++++++....+....+|++....++.|.+.||++|.++|++||++|+||+||+.+.+.... ..........
T Consensus 158 ~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~ 237 (401)
T d1fc4a_ 158 NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGR 237 (401)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTC
T ss_pred CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCC
Confidence 46789999998877665555568888899999999999999999999999999999999887654321 1111112345
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
+|+++.+..|.++++. |.++..+.+..+......++|++..... +..+.++..+++.+ ..
T Consensus 238 ~dii~~tl~Ka~gg~~--Gg~v~g~~~~~~~l~~~~~~~~~s~~l~----------------p~~~~aa~~~l~~~--~~ 297 (401)
T d1fc4a_ 238 VDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLA----------------PAIVAASIKVLEMV--EA 297 (401)
T ss_dssp CSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCC----------------HHHHHHHHHHHHHH--HT
T ss_pred CeEEEeecccccccCC--cccccCCHHHHHHHHcCChhhhhcCCCC----------------HHHHHHHHhhhccc--cc
Confidence 8999999999997553 4445566654432223334444433210 01122223333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
.++++++.+++.+++++.+.+. ++.+. ...++++.+.+.. .....++.+.|.++|.
T Consensus 298 ~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~~pIv~v~~~~----------------------~~~a~~~~~~L~~~Gi 353 (401)
T d1fc4a_ 298 GSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD----------------------AVVAQKFARELQKEGI 353 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC----------------------HHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHHHhhhccc-CCccC-CCCCCEEEEEECC----------------------HHHHHHHHHHHHHCCc
Confidence 4677899999999999999886 66654 4567788776654 3334578888988885
Q ss_pred EEE---EEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 263 AYM---THAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 263 ~~~---~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
+.. .|+++.+...+|++++ ..+|+||||+++++|+++.+++
T Consensus 354 ~v~~i~~PtVp~g~~~lRi~~~-a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 354 YVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEeECCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 422 2345677889999966 5799999999999999998775
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.83 E-value=3.2e-20 Score=167.85 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=160.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhc--C-CC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--G-VE 101 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~--~-~~ 101 (310)
+-|+++|+++++.... ..+.+|++.+..+|.|.+.|+++|.++|++||++|+||.||+.|.+.- ..++... + ..
T Consensus 160 Hnd~~~l~~l~~~~~~--~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~-~G~G~~~~~~~~~ 236 (396)
T d2bwna1 160 HNDVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGP-RGAGVAERDGLMH 236 (396)
T ss_dssp TTCHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSST-TSCCHHHHHTCGG
T ss_pred cchHHHhhhHHhhhcc--cCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeecc-ccccchhhcCCce
Confidence 3467889888876432 235689999999999999999999999999999999999998887532 2221111 1 13
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.+|+++.+..|.|++. |.++..++...+.......+|++..... ++.+.++.++++.+..+
T Consensus 237 ~~di~~gTlsKa~g~~---Gg~v~~~~~~i~~l~~~~~~~ifStalp----------------p~~~aa~~~al~i~~~~ 297 (396)
T d2bwna1 237 RIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSYAPGFIFSTSLP----------------PAIAAGAQASIAFLKTA 297 (396)
T ss_dssp GCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHHCHHHHTSBCCC----------------HHHHHHHHHHHHHHTSH
T ss_pred eeeeeeeccccccccc---ccccchhHHHHHHHHhhcchhhhcccCc----------------HHHHHHHHHHHHHhhcc
Confidence 4899999999999854 4455566655433333444566554321 12334455566666556
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHH-hc
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESIN-AS 260 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~ 260 (310)
..+++..+.+.+++++++.|.+. ++.+. +..++|+.+.+.. .....++.++|. +.
T Consensus 298 ~~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~spIvpv~ig~----------------------~~~~~~~a~~lL~e~ 353 (396)
T d2bwna1 298 EGQKLRDAQQMHAKVLKMRLKAL-GMPII-DHGSHIVPVVIGD----------------------PVHTKAVSDMLLSDY 353 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSCEEEECCC----------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEeCC----------------------HHHHHHHHHHHHHhC
Confidence 66777888889999999999876 77765 4567888877654 233356666655 45
Q ss_pred CcEEEE----EeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 261 GKAYMT----HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 261 g~~~~~----~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
|. ++. |+++.+...+|++++ ..+|+||||+++++|+++
T Consensus 354 Gi-~v~~i~~PtVp~g~~rlRi~ls-a~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 354 GV-YVQPINFPTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp CE-ECCEECTTTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHH
T ss_pred CE-EEEEECCCcCCCCCeeEEEEeC-ccCCHHHHHHHHHHHHHh
Confidence 64 333 456678889999977 479999999999999875
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.83 E-value=1.1e-20 Score=170.99 Aligned_cols=255 Identities=12% Similarity=-0.024 Sum_probs=160.1
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
.+.++.++.. ..+.+..+..+.... +.++++++++|.+|.+.|+++|+++||++|++++||++++.+..+.+.
T Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~ 190 (388)
T d2ch1a1 118 VRTIEGPPDR--PFSLETLARAIELHQ-----PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYM 190 (388)
T ss_dssp EEEEECCTTS--CCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCT
T ss_pred cccccccccc--ccchhhhhhhhccCC-----cceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccch
Confidence 6667776543 677888777765432 458999999999999999999999999999999999999999988764
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc-CCCc-----
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL-SRRF----- 166 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~~~~----- 166 (310)
.. .++|+++++.|||+++|.|+|++++++... .+......+....... ............+. .++.
T Consensus 191 ~~------~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~ 262 (388)
T d2ch1a1 191 DK------WEIDAVYTGAQKVLGAPPGITPISISPKAL-DVIRNRRTKSKVFYWD-LLLLGNYWGCYDEPKRYHHTVASN 262 (388)
T ss_dssp TT------TTCCEEECCCC-CCCCCSSCEEEEECHHHH-HHHHTCSSCCSCGGGC-HHHHHHHTTCSSSCCCCCCCCCHH
T ss_pred hc------cCceEEEEccccccCCCCeEEEEeccHHHH-HhhhcccCcccccccc-chhhhhhhcccccccccCccchHH
Confidence 22 259999999999999999999999986643 3332211111110000 00000000000011 1111
Q ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhccccchhH
Q 046506 167 RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYENSLLSEE 243 (310)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (310)
....+..+++.+...+.....++...........+.......+...+ ...+++|.++..- +
T Consensus 263 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~---------------~- 326 (388)
T d2ch1a1 263 LIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV---------------D- 326 (388)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC---------------C-
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCC---------------C-
Confidence 12344455555556667777777777777777777654222222222 2346788886421 0
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 244 ERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 244 ~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.|.+++.+.+..... ...+.+|||.+++++|+|||++++++|+++++.+
T Consensus 327 ------~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 327 ------WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp ------HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 135556665543333332211 1235899995456789999999999999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.7e-19 Score=163.19 Aligned_cols=227 Identities=13% Similarity=0.011 Sum_probs=157.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhh--cCCCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGVEG 102 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~--~~~~~ 102 (310)
+.|+++||+.+.+.+. ...+|++....++.|.+.|+++|.++|++||++++||+||+.+.+.-. ..+.. .++ .
T Consensus 151 hnd~~~le~~l~~~~~---~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~-g~G~~~~~~~-~ 225 (383)
T d1bs0a_ 151 HNDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGSCWLQKV-K 225 (383)
T ss_dssp TTCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCHHHHTTC-C
T ss_pred chHHHHHHHHhcccCC---CceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCc-ccchHHHcCC-c
Confidence 4688999999976432 245888999999999999999999999999999999999988865432 12111 122 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|.+..+..|.++.+ |.++..+....+......+.|++..... +..+.++.++++.+....
T Consensus 226 ~~~~~~t~~ka~g~~---Gg~v~~~~~~~~~l~~~~~~~~~s~~~~----------------p~~~aa~~~a~~~~~~~~ 286 (383)
T d1bs0a_ 226 PELLVVTFGKGFGVS---GAAVLCSSTVADYLLQFARHLIYSTSMP----------------PAQAQALRASLAVIRSDE 286 (383)
T ss_dssp CSEEEEESSSTTSSC---CEEEEECHHHHHHHHHHCHHHHSSBCCC----------------HHHHHHHHHHHHHHHSHH
T ss_pred ccccccccccccccc---ccccccchhHHHHHHhhchhhhhccccc----------------chHHHHHHHHHHHHHhhh
Confidence 677888888988765 3333445544333323344455443210 112234445555554566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 262 (310)
.+.+..+..++..++.+.|.++ ++.+. +..++|+.+.+.. .....++.+.|.++|.
T Consensus 287 ~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~s~Ii~v~~g~----------------------~~~a~~~~~~L~~~Gi 342 (383)
T d1bs0a_ 287 GDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD----------------------NSRALQLAEKLRQQGC 342 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES----------------------HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCEEEEEECC----------------------HHHHHHHHHHHHHCCc
Confidence 7788889999999999999987 67765 4456777666544 2334578888888885
Q ss_pred EE---EEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 263 AY---MTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 263 ~~---~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+. ..|++..+...+|++++ ..+|+||||+++++|..+
T Consensus 343 ~v~~~~~PtVp~g~~~lRi~~~-a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 343 WVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHhc
Confidence 42 22455678889999966 579999999999999875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.74 E-value=1e-17 Score=155.07 Aligned_cols=234 Identities=9% Similarity=-0.049 Sum_probs=141.7
Q ss_pred CcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcC-------CCCCCeeeeeccccccc
Q 046506 44 IPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDG-------VEGADSFSLNAHKWFFT 116 (310)
Q Consensus 44 ~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~-------~~~~D~~~~~~hK~l~~ 116 (310)
.+..+++.+.+|+.|.+.|+++|+++||+||+++|||+||++++...+.+...... ..++|++++|+||++++
T Consensus 173 ~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~ 252 (462)
T d1c4ka2 173 RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG 252 (462)
T ss_dssp CCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC
T ss_pred CCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccc
Confidence 35567788899999999999999999999999999999999998877655432111 12359999999999999
Q ss_pred ccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-c-chHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 046506 117 TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-F-RSLKLWFVLRNYGVANLRHFLRSHVNMA 194 (310)
Q Consensus 117 p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a 194 (310)
+.|++++++++... ... ..+...... ......++.+.+ + ...++.++...+..+..+++.++..+++
T Consensus 253 ~~~g~ll~~~~~~~-~~~----~~~~~~~~~------~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a 321 (462)
T d1c4ka2 253 FSQTSQIHKKDSHI-KGQ----LRYCDHKHF------NNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITT 321 (462)
T ss_dssp CTTCEEEEEECGGG-TTS----TTCCCHHHH------HHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeccccc-ccc----chhhhHHHH------HHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99888888776532 110 011110000 000001111111 1 2234444555566667788889999999
Q ss_pred HHHHHHHcCCCCeEEecCCC-------------------------------------ce-------EEEEEEcCCcchhh
Q 046506 195 KLFERLVGSDKRFEVVFPRH-------------------------------------FA-------VVCFRVSPSAVMDK 230 (310)
Q Consensus 195 ~~l~~~L~~~~~~~v~~~~~-------------------------------------~~-------~v~~~~~~~~~~~~ 230 (310)
+++++++.++++......+. .. -+.+...+..
T Consensus 322 ~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~---- 397 (462)
T d1c4ka2 322 IEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGIN---- 397 (462)
T ss_dssp HHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEE----
T ss_pred HHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCcc----
Confidence 99999998876543221100 00 0112111100
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
....... ....-...+.+.|.+.|. ..... +...+|++++ +++|+||||+++++|+++.+.+
T Consensus 398 -----~~~g~~~--~~G~~~~~~~~~L~~~gI-~~e~~---~~~~i~~~~s-~~~T~edid~li~aL~ei~r~~ 459 (462)
T d1c4ka2 398 -----PETGDYE--DFGVPATIVANYLRDHGI-IPEKS---DLNSILFLMT-PAETPAKMNNLITQLLQLQRLI 459 (462)
T ss_dssp -----TTTTEEC--SSCCCHHHHHHHHHHTTC-CCSEE---CSSEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccchh--hcCCcHHHHHHHHHHcCC-eeecc---CCCeEEEEec-CCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000 000001345666666664 22211 3567899955 7899999999999999998765
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.7e-17 Score=148.04 Aligned_cols=242 Identities=13% Similarity=-0.004 Sum_probs=151.0
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhC--cEEEeecccccccccC
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFG--IWVHVDAAYAGSACIC 90 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g--~~l~vD~a~~~~~~~~ 90 (310)
+..++.++.. .++++++. ...+..++++|+.|.+|.+.|+++|+++|++|+ .+++||++++.+..+.
T Consensus 100 ~~~~~~~~g~--~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i 168 (348)
T d1iuga_ 100 VERLDYPYGD--TPRPEDVA---------KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEV 168 (348)
T ss_dssp EEEEECCTTC--CCCTTTSC---------CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCC
T ss_pred cccccccCCC--cccccccc---------ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhccccccc
Confidence 6777766543 44444321 112458999999999999999999999999986 7899999998888776
Q ss_pred hhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC--cch
Q 046506 91 PEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR--FRS 168 (310)
Q Consensus 91 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 168 (310)
+.... ++|++++++|||+++|.|+|+++++++. +.+. ...+.|+.... ..++........++ ...
T Consensus 169 ~~d~~------~iD~~~~~sqK~l~gppG~~~v~~s~~~-le~~-~~~~~~~dl~~-----~~~~~~~~~~~~Tp~v~~i 235 (348)
T d1iuga_ 169 ALEAM------GVDAAASGSQKGLMCPPGLGFVALSPRA-LERL-KPRGYYLDLAR-----ELKAQKEGESAWTPAINLV 235 (348)
T ss_dssp CSGGG------TCSEEEEESSSTTCCCSCEEEEEECHHH-HHTC-CCCSSTTCHHH-----HHHHHTTTCCSSCCCHHHH
T ss_pred ccccc------cCCEEEeccccceecCCceeeeeechHH-Hhhh-cccccccchhh-----hhhhhccCcccccccchHH
Confidence 54221 5999999999999999999999998774 3332 21122222110 00000000001111 123
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCc-eEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 169 LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHF-AVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
+++..+++.+..++ ++..++.......+++.+.. .++.+.....+ .+++|+++.. + +
T Consensus 236 ~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~s~~v~~~~~P~g-~--------------~----- 293 (348)
T d1iuga_ 236 LAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEE-GGLRPVPKRFSPAVAAFYLPEG-V--------------P----- 293 (348)
T ss_dssp HHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHH-TTCEESCSSBCTTCEEEECCTT-C--------------C-----
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhh-hhhccChhhcCCeEEEEECCCC-C--------------C-----
Confidence 45556666554443 33333333344445555444 38887644333 3567777542 1 1
Q ss_pred HHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.|.++|. .+.++.- -....+||+.+. +++++|+++++++|++.++++
T Consensus 294 --~~~~~~~l~~~gi-~i~~G~~~l~~~~~RIg~mG-~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 294 --YARVKEAFAQRGA-VIAGGQGPLKGKVFRLSLMG-AYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp --HHHHHHHHHTTTE-ECEECCGGGTTTEEEECCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCe-EEEcCccccCCCEEEEeCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 1467777877774 4443211 113589999775 688999999999999999876
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=2.7e-17 Score=144.23 Aligned_cols=237 Identities=13% Similarity=0.016 Sum_probs=148.7
Q ss_pred CCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEE-EEeccCCccc---ccCChHHHHHHHHHhCcEEEeecccccc
Q 046506 11 KNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFL-CATIGTTAIT---AVDTLKPLCDVAKQFGIWVHVDAAYAGS 86 (310)
Q Consensus 11 ~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v-~~~~~~~~~G---~~~pl~~I~~l~~~~g~~l~vD~a~~~~ 86 (310)
..+..++.+. .+.++++.+++.+.+.......+..+ +.....+..+ .++++++++++|++||+++|+|++++++
T Consensus 103 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~ 180 (345)
T d1v72a1 103 GAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180 (345)
T ss_dssp SCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred cccccccccc--cccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccce
Confidence 3466666654 45899999999998765433333322 2222223333 3566888999999999999999999766
Q ss_pred cccChhhhhhhcC-CCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 87 ACICPEFRHFIDG-VEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 87 ~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
............. ....+.++.+.+|++. ...+............... . .. ....+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~--~~----------------~~~~~~~ 239 (345)
T d1v72a1 181 ALVSLGCSPAEMTWKAGVDALSFGATKNGV--LAAEAIVLFNTSLATEMSY-R--RK----------------RAGHLSS 239 (345)
T ss_dssp HHHHHTCCTTTTTGGGTCCEEEECCGGGTC--SSCEEEEESSGGGHHHHHH-H--HH----------------HTTCCCS
T ss_pred eccccccCHHHhhccccccccccCcccccc--ccccccccchhhhhhhccc-c--cc----------------ccccccc
Confidence 5443221100000 1124555566665544 3344444444432211100 0 00 0011112
Q ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHH
Q 046506 166 FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEER 245 (310)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (310)
......+++...+....+.+...+...+.+++.+.+.+++++.+..+..++++.+.+..
T Consensus 240 ~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~--------------------- 298 (345)
T d1v72a1 240 KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS--------------------- 298 (345)
T ss_dssp STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH---------------------
T ss_pred hhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCH---------------------
Confidence 23344455566667778888889999999999999999999999888889998887642
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 246 INEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 246 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
++.+.|.++|.... ....+.+.+|||++ ++||+||||+++++|++.
T Consensus 299 ------~~~~~L~~~gi~v~--~~~~~~~~lR~~~~-~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 299 ------AMIDALLKAGFGFY--HDRWGPNVVRFVTS-FATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ------HHHHHHHHTTCBCB--CSSSSTTEEEEECC-TTCCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHcCCCcc--ccCCCCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 34567778885432 22235679999955 789999999999999864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.61 E-value=2.6e-15 Score=138.25 Aligned_cols=248 Identities=10% Similarity=0.092 Sum_probs=135.7
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-ccc---CChHHHHHHHHHhCcEEEeecccccccccChh-----h
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAV---DTLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----F 93 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~-----~ 93 (310)
++.+|+++|+++|++.+... +.+++++..+|.. |.+ +++++|+++|++||+.+|+|+|+..+...+.. +
T Consensus 155 ~~~~d~~~le~~I~~~~~~~--~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~ 232 (456)
T d1c7ga_ 155 KGDIDLNKLATLIKEKGAEN--IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGY 232 (456)
T ss_dssp TTCBCHHHHHHHHHHHCGGG--EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTC
T ss_pred cccCCHHHHHHHhhhcCCcc--ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhccccccc
Confidence 45899999999999875432 3355665555554 444 45788999999999999999998755322111 0
Q ss_pred h-----hhhc-CCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc-
Q 046506 94 R-----HFID-GVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF- 166 (310)
Q Consensus 94 ~-----~~~~-~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (310)
. +... -...+|++++++||.+++|.| |+++.+++....+.......+.... ..++...
T Consensus 233 ~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~~g~~--------------~~g~~~~~ 297 (456)
T d1c7ga_ 233 ENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVYEGMP--------------SYGGLAGR 297 (456)
T ss_dssp TTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHHTCCT--------------TTTTCCHH
T ss_pred CCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhccccCCCc--------------ccchhhHH
Confidence 0 0000 013589999999999998755 6777777655433321110000000 0011111
Q ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 167 RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
.+.++...+..... .+..++..+++++|.+.|.+. ++.++.++..+.+......... ..+......
T Consensus 298 ~~~a~a~~l~e~~~---~~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~~----------~i~~~~~~~ 363 (456)
T d1c7ga_ 298 DMEAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFCP----------HLTQDQFPA 363 (456)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHCT----------TSCGGGCHH
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhcc----------CCCcccccH
Confidence 11222222222211 234455567788999999886 7777766555544332221000 000010011
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeEE-------------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINASGKAYMTHAVL-------------GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 247 ~~~~~~l~~~l~~~g~~~~~~~~~-------------~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..+ +...+.+.|+..+..... .....+|+++.....|+||||+++++|+++.++.
T Consensus 364 ~~~---~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~ 431 (456)
T d1c7ga_ 364 QSL---AASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp HHH---HHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTG
T ss_pred HHH---HHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhh
Confidence 111 222233445433321110 1235799997744459999999999999988643
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.60 E-value=3.2e-14 Score=126.11 Aligned_cols=235 Identities=11% Similarity=0.078 Sum_probs=155.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
.+..|+|++ ++.||.|++++.+.+.+ |.+|++- .+. .-...|+++++++|++.|++|++|+||-+|.+....
T Consensus 138 ~~~y~~d~~-~~~ID~d~l~~~a~~~k-----PklIi~G-~S~-y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~ 209 (405)
T d1kl1a_ 138 FVAYGVDPE-THVIDYDDVREKARLHR-----PKLIVAA-ASA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGL 209 (405)
T ss_dssp EEEECBCTT-TCSBCHHHHHHHHHHHC-----CSEEEEC-CSS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS
T ss_pred EEEeccchh-cccccHHHHHHHHHhhC-----cceEEec-ccc-cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhh
Confidence 455678875 57999999999998863 6655553 333 344568999999999999999999999888766654
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhh-ccCCccccccccccccccCCCCceeccCCCcc-hHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSL-STNPEYLKNKATESKQVVDYKDWQITLSRRFR-SLK 170 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 170 (310)
+... +.++|+++.+.||+|.+|.|. +++.+++ ..++.- ...|. +|++-... .++
T Consensus 210 ~~~P---~~~aDvvt~tThKtlrGPrgg-~I~~~~~-~~~~i~~avfPg-------------------~qggp~~~~iAa 265 (405)
T d1kl1a_ 210 HPNP---VPYAHFVTTTTHKTLRGPRGG-MILCQEQ-FAKQIDKAIFPG-------------------IQGGPLMHVIAA 265 (405)
T ss_dssp SCCS---TTTCSEEEEESSSTTCCCSCE-EEEECHH-HHHHHHHHHTTT-------------------TCSSCCHHHHHH
T ss_pred cCCh---hhhhhheeccccccccCCCCc-eEEecch-hHHHHHhhhCcc-------------------cccCcchhHHHH
Confidence 4322 347999999999999999754 5555543 222211 11111 23332222 344
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHH
Q 046506 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEF 249 (310)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (310)
...++.....+.+.+..++..++|+.|.+.|.+. |++++.. .+.+++.+.+.+.... .
T Consensus 266 ~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~~~~------------------g-- 324 (405)
T d1kl1a_ 266 KAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLT------------------G-- 324 (405)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCC------------------H--
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeeccccccCCc------------------H--
Confidence 4455555445678899999999999999999986 9999864 5677888877653211 1
Q ss_pred HHHHHHHHHhcCcEEEEEeE-E------CCEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 250 NRELLESINASGKAYMTHAV-L------GGIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 250 ~~~l~~~l~~~g~~~~~~~~-~------~~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
....+.|.+.|+ .+.... + .....||+... .....++|+.++-+-|.++++
T Consensus 325 -~~ae~~Le~agI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 325 -KTAEKVLDEVGI-TVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp -HHHHHHHHHHTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHcCe-EEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 223344555564 333211 1 12367999833 234567899888888877663
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.59 E-value=2.9e-15 Score=135.32 Aligned_cols=239 Identities=12% Similarity=0.097 Sum_probs=150.4
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.++.++.+++.+|+++|++++++. +.++++..++|++|.+.+ +++|+++|+++|+++++|.+++.....
T Consensus 138 ~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~ 211 (388)
T d1j32a_ 138 PVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD 211 (388)
T ss_dssp EEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT
T ss_pred EEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhccccc
Confidence 77888876556789999999998754 457888889999999877 677888999999999999998655443
Q ss_pred ChhhhhhhcCC---CCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 90 CPEFRHFIDGV---EGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 90 ~~~~~~~~~~~---~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
.+.+....... ..-.++..|.+|.++.| .-+|+++. ++..+....... .+....
T Consensus 212 ~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~-~~~~~~~~~~~~-~~~~~~-------------------- 269 (388)
T d1j32a_ 212 DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKIQ-GHSTSN-------------------- 269 (388)
T ss_dssp TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHHH-HTTTCS--------------------
T ss_pred CCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE-CHHHHHHHHHhh-hhcccc--------------------
Confidence 32211110000 01235678999998765 33677654 444443221110 010000
Q ss_pred cchHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCce-EEEEEEcCCcchhhhhhhhccccchh
Q 046506 166 FRSLKLWFVLRN--YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA-VVCFRVSPSAVMDKLKTKYENSLLSE 242 (310)
Q Consensus 166 ~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
.......++... .+.+.+++..++..++.+.+.+.|.+++++.+. +|+.+ .+.+.+..... +
T Consensus 270 ~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~gg~~l~~~l~~~~~--------------~ 334 (388)
T d1j32a_ 270 VCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMFPSIAKTGR--------------S 334 (388)
T ss_dssp CCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC-CCCBTTEECCBCGGGTC--------------C
T ss_pred ccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec-CCCceEEEEEECCCCCC--------------C
Confidence 011111222222 245678888888999999999999998888875 44444 33333332110 0
Q ss_pred HHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 243 EERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 243 ~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+++.+ .|....++..+...+++|+++. +++++++..++.|+++++.+
T Consensus 335 -------~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~---~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 335 -------SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp -------HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe---CCHHHHHHHHHHHHHHHHHh
Confidence 1245555544 4554444444455678999964 57889999999999988765
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=6.2e-14 Score=124.84 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=156.4
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
.+..++|++ +.||.|++++...+.+ |.+|++. .|......|+++++++|++.|+++++|.||-+|.+....
T Consensus 141 ~~~y~~d~~--~~IDyd~l~~~a~~~k-----PklIi~G--~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~ 211 (416)
T d1dfoa_ 141 IVPYGIDAT--GHIDYADLEKQAKEHK-----PKMIIGG--FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGV 211 (416)
T ss_dssp EEEECBCSS--SSBCHHHHHHHHHHHC-----CSEEEEE--CSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTS
T ss_pred EEecccCCc--cCccHHHHHHHHHHhc-----cceEEec--ccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccc
Confidence 455566654 4799999999998863 7666654 344566788999999999999999999999887665543
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCc-hhHHhhh--ccCCccccccccccccccCCCCceeccCCCcc-h
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDP-SDLVNSL--STNPEYLKNKATESKQVVDYKDWQITLSRRFR-S 168 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~-~~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (310)
+.. -+.++|+++.+.||+|.+|.| |+++.+.. +.+.+.+ ...|. +|++.... .
T Consensus 212 ~~s---P~~~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfPg-------------------~qggp~~~~i 268 (416)
T d1dfoa_ 212 YPN---PVPHAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFPG-------------------GQGGPLMHVI 268 (416)
T ss_dssp SCC---CTTTSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTTT-------------------TCSSCCHHHH
T ss_pred cCC---cccccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCcc-------------------cccCccHHHH
Confidence 332 234699999999999999964 55555532 2111111 11121 23332222 3
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 169 LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
++...++.......+.+..++..++|+.|.+.|.+. |++++. ..+.+++.+.+.+.++. .
T Consensus 269 aa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~~~------------------G 329 (416)
T d1dfoa_ 269 AGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDKNLT------------------G 329 (416)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCC------------------H
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecccCCC------------------H
Confidence 445556666556788999999999999999999986 999985 35777888877653211 1
Q ss_pred HHHHHHHHHHHhcCcEEEEE-eEE------CCEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTH-AVL------GGIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~-~~~------~~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
......|.+.|+ .+.. +.+ .....||+... .....++|++.+-+-|.+++.
T Consensus 330 ---~~a~~~Le~~gI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~ 390 (416)
T d1dfoa_ 330 ---KEADAALGRANI-TVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD 390 (416)
T ss_dssp ---HHHHHHHHHTTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCe-EEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 344455555564 3332 111 12467999833 233567899888777776654
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.59 E-value=1.6e-14 Score=128.58 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=148.5
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeec
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~ 81 (310)
..+.+ ++.+|++.++.+.++ +++++++.+. +.+++++.++|++|...+ +++|+++|++|++++++|.
T Consensus 115 ~~~~~---~~~v~~~~~~~~~~~-~~~~~~~~~~------~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De 184 (355)
T d1lc5a_ 115 QSGCE---IRRWSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDE 184 (355)
T ss_dssp HTTCE---EEEEECCGGGTTCCC-TTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred ccccc---ceeeeeeccCCccce-eeeeeccccc------cceeeeecccCcccccchhhhhhhhhhhcccccccccccc
Confidence 34555 888898765445555 5566655443 447788888999999877 6788899999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhc-cCCccccccccccccccCCCCce
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLS-TNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++..+............ ...-.++..|..|+++.| .-+|+++..+.. +...+. ...++.
T Consensus 185 ~y~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~-~~~~~~~~~~~~~----------------- 245 (355)
T d1lc5a_ 185 AFIDFIPHETGFIPALK-DNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA-AMARMRRQQMPWS----------------- 245 (355)
T ss_dssp TTGGGSTTCCCSGGGCT-TCTTEEEEEESTTTTTCTTTCCEEEECCCHH-HHHHHHHHSCTTC-----------------
T ss_pred ceeeeeeeccccccccc-ccccceeecccccccccccccccceeccchh-hhHHHHhhcCCcc-----------------
Confidence 98654322221111111 112346778999998755 336777655442 222221 111100
Q ss_pred eccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
...++..++...+ ..+.+.+.+++..+..+++.+.|.+++++.+. +..++.+.+.+....
T Consensus 246 ------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~~~------------ 306 (355)
T d1lc5a_ 246 ------VNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERED------------ 306 (355)
T ss_dssp ------SCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCTT------------
T ss_pred ------ccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCCCH------------
Confidence 1222333333333 34567778888888899999999999898875 556676766665421
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC--CEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLG--GIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.|.++|.+...+..+. +.+++|||+. +++|+++++++|++++
T Consensus 307 ------------~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~----~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 307 ------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVL 355 (355)
T ss_dssp ------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC----CHHHHHHHHHHHHHhC
Confidence 256777888875444433332 3578999953 5899999999999863
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.58 E-value=1.7e-16 Score=141.86 Aligned_cols=243 Identities=11% Similarity=-0.021 Sum_probs=139.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++..|.. +..++.++.+ .++++.+++.+...+ .++.++.+|...|+++|.++|+++|++++||++
T Consensus 110 ~~~~g~~---~~~~~~~~~~--~~~~~~~~~~~~~~~----------~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDav 174 (361)
T d2c0ra1 110 AKLIGDT---HVAASSEASN--YMTLPKLQEIQLQDN----------AAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMS 174 (361)
T ss_dssp HHHHSCE---EEEEECGGGT--TCSCCCGGGCCCCTT----------EEEEEEESEETTTTEECSSCCCCTTSCEEEECT
T ss_pred hhhcCce---eeeecccccc--ccchhhhhhhcccCc----------ceEEEEecccceecceEEEeeccCCceEEEEee
Confidence 3455665 7778877654 688888877665431 234455678889999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
++++..+.+.. ..|+..++.+|+++.|.|.++++.... .. ..-...+.+..... .... ....
T Consensus 175 ss~g~~~id~~--------~~di~~~s~~k~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-----~~~~---~~~~ 236 (361)
T d2c0ra1 175 SDILSRPFDLN--------QFGLVYAGAQKNLGPSGVTVVIVREDL-VA-ESPKHLPTMLRYDT-----YVKN---NSLY 236 (361)
T ss_dssp TTTTSSCCCGG--------GCSEEEEETTTTTCCSSCEEEEEEGGG-SS-SCCTTSCGGGCHHH-----HHHT---TTCS
T ss_pred ccccccccccc--------cceeEEEecccccccccCcEEEEEhHH-hh-hCcccccccccccc-----cccc---cccc
Confidence 99999888653 267778889999887766555544332 21 11011111100000 0000 0000
Q ss_pred CCCc--chHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEecCC---CceEEEEEEcCCcchhhhhhhh
Q 046506 163 SRRF--RSLKLWFVLR-NYGVANLRHFLRSHVNMAKLFERLVGSDK-RFEVVFPR---HFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 163 ~~~~--~~~~~~~~l~-~~~~~~~~~~~~~~~~~a~~l~~~L~~~~-~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.... ....+..+.. .....+...+.++....+..+.+...... .......+ ...+++|.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~----------- 305 (361)
T d2c0ra1 237 NTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS----------- 305 (361)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-----------
T ss_pred ccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCC-----------
Confidence 0111 1111111111 12223444555555555555555555432 33333222 23456777764
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
....+++.+.|.+.|.....+ +...+.+|||+++ ++|+|||+.|+++|+++.++
T Consensus 306 -----------~~~~~~~~~~L~~~GI~~~~G--~~~~g~~RIs~~~-~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 306 -----------EELEKEFVKASEQEGFVGLKG--HRSVGGLRASIYN-AVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp -----------HHHHHHHHHHHHHTTEESCBC--CTTTCSEEEECCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred -----------cccHHHHHHHHHHCCCEEecC--CCcCCeEEEEecC-CCCHHHHHHHHHHHHHHHHh
Confidence 122356777787777543332 1222349999874 79999999999999987654
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.58 E-value=9.6e-14 Score=126.87 Aligned_cols=252 Identities=13% Similarity=0.043 Sum_probs=152.7
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
++.+++++.+.+.+|++.+++++.+....+..+.+++++.++|++|.+.+ +++|.++|++||+++++|.+++...+.
T Consensus 158 ~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~ 237 (431)
T d1m7ya_ 158 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFS 237 (431)
T ss_dssp EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS
T ss_pred eccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccC
Confidence 88888887656789999999999988777666778888999999999876 778999999999999999999755433
Q ss_pred Chhhhhh---hcCC---CCC-----Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCC
Q 046506 90 CPEFRHF---IDGV---EGA-----DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKD 157 (310)
Q Consensus 90 ~~~~~~~---~~~~---~~~-----D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 157 (310)
.+.+... .... ... -.+..+..|.++.| .-+|+++..++ .+.........+.....
T Consensus 238 ~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~-~i~~~~~~~~~~~~~~~----------- 305 (431)
T d1m7ya_ 238 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-MVVAAATKMSSFGLVSS----------- 305 (431)
T ss_dssp SSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCH-HHHHHHHHHGGGSCCCH-----------
T ss_pred CCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchh-hhHHHHHHHhccccccc-----------
Confidence 2211100 0000 000 14567899999865 44677766544 33232211111110000
Q ss_pred ceeccCCCcchHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 158 WQITLSRRFRSLKLWFVLRN--YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.....+.+.+.. ...+.+.+..++..+..+.+.+.|++ +|+++..+.....+.+.+.....
T Consensus 306 --------~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~-------- 368 (431)
T d1m7ya_ 306 --------QTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLR-------- 368 (431)
T ss_dssp --------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCCCSSSEEEEECGGGSS--------
T ss_pred --------cccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEEecCCceeEEEEECccccc--------
Confidence 011111111111 11234566666777778888899887 59998744344445555543100
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE-E--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAV-L--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.. . .....++.++|.++.++.+.|.. . .+.+++|+|+. ..++++++..++.|++++++
T Consensus 369 ---~~-~----~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a--~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 369 ---SN-T----FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA--NLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp ---SS-S----HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS--SSCHHHHHHHHHHHHHHHHH
T ss_pred ---cC-c----ccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC--cCCHHHHHHHHHHHHHHHHH
Confidence 00 0 11123566666655445555432 1 34578999965 25678899999998887754
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=1.8e-14 Score=130.65 Aligned_cols=244 Identities=17% Similarity=0.128 Sum_probs=153.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
|+..|++ ++.+|.+.. ..+.++ +.++ ...++++ .+|..|.+.++++|++++|+.|+.+++|+.
T Consensus 171 a~~~g~~---vv~v~~~~~---~~~~~~----~~~~------~Aavmi~-~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad 233 (437)
T d1wyua1 171 LEAVGAK---LLTLPLEGG---RTPLPE----VGEE------VGAVVVQ-NPNFLGALEDLGPFAEAAHGAGALFVAVAD 233 (437)
T ss_dssp HHHTTCE---EEEECCBTT---BCCCCC----CCTT------EEEEEEE-SSCTTSBCCCHHHHHHHHHHTTCEEEEECC
T ss_pred cccceee---EEeeecccc---cchhhh----hccc------eeEEEEc-cccccccccchHHHHHHhhhccceEEeeec
Confidence 4567887 999998753 232222 2222 3455554 456679999999999999999999888876
Q ss_pred ccccccc-ChhhhhhhcCCCCCCeeeeecccccccccce-----EEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 83 YAGSACI-CPEFRHFIDGVEGADSFSLNAHKWFFTTLDC-----CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-----g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
..+-... .+.. .++|+++.+ ||.|+.|.|. |++.++++ . .+. .|+++.....+..+...+.
T Consensus 234 ~~al~~l~~Pg~-------~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~-l-~r~---lPgrivg~s~d~~G~~~~~ 300 (437)
T d1wyua1 234 PLSLGVLKPPGA-------YGADIAVGD-GQSLGLPMGFGGPHFGFLATKKA-F-VRQ---LPGRLVSETVDVEGRRGFI 300 (437)
T ss_dssp TTGGGTBCCHHH-------HTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG-G-GGG---CCSCCEEEEEBTTSCEEEE
T ss_pred hhhhhccccccc-------cccceEeec-cceeccccCCCcCccccccccch-h-hcc---ccccccccccccCCcccce
Confidence 4322211 1211 169999888 7777776655 77777654 2 232 2444443322211111110
Q ss_pred C--cee-ccCCC------------cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEE
Q 046506 157 D--WQI-TLSRR------------FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCF 220 (310)
Q Consensus 157 ~--~~~-~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~ 220 (310)
. .+. |-.|| ..++..+..+..+|.+|+++..++...+|.|++++|.++++++++.+ +-++-+.+
T Consensus 301 l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v 380 (437)
T d1wyua1 301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFAL 380 (437)
T ss_dssp ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEE
T ss_pred eecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEE
Confidence 0 000 00011 12345566777889999999999999999999999999999987643 33455544
Q ss_pred EEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEE-eEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 221 RVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTH-AVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..... ..++.++|.+.|...... ..+...+.+.++++- .+|+||||+|+++|++
T Consensus 381 ~~~~~------------------------~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE-~~tkeeiD~~v~al~e 435 (437)
T d1wyua1 381 ALPKD------------------------PEAVRRALAERGFHGATPVPREYGENLALFAATE-LHEEEDLLALREALKE 435 (437)
T ss_dssp ECSSC------------------------HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCT-TCCHHHHHHHHHHHHH
T ss_pred ECCCC------------------------HHHHHHHHHhCCCCCCcccccCCCCCeEEEecCC-CCCHHHHHHHHHHHHH
Confidence 43321 146788888888532111 112245688899774 5899999999999998
Q ss_pred HH
Q 046506 300 HL 301 (310)
Q Consensus 300 ~~ 301 (310)
++
T Consensus 436 il 437 (437)
T d1wyua1 436 VL 437 (437)
T ss_dssp HC
T ss_pred hC
Confidence 63
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.58 E-value=1.2e-15 Score=136.78 Aligned_cols=259 Identities=13% Similarity=0.077 Sum_probs=151.1
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|.. .++++++++ .+.+|+++|+++|++.| .+|+++| ..|...|+++|.++|++||++++.|+||+
T Consensus 90 ~~g~~---pv~~d~~~~-~~~~d~~~l~~~i~~~t------kaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a 156 (376)
T d1mdoa_ 90 LLGAN---PVMVDVDRD-TLMVTPEHIEAAITPQT------KAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHA 156 (376)
T ss_dssp HTTCE---EEEECBCTT-TCCBCHHHHHHHCCTTE------EEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTC
T ss_pred ccccc---eeeeccccc-ccCCCHHHHHHhcCCCC------eEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchh
Confidence 34555 888889886 57899999999998753 3566554 57988999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCC-ccccccccccccccCCCCceeccC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNP-EYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
.+...... ..+..+..++++.++|++.++ +.|+++++++....+...... .......................+
T Consensus 157 ~g~~~~~~----~~g~~g~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 231 (376)
T d1mdoa_ 157 TGTSYKGR----HIGARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPG 231 (376)
T ss_dssp TTCEETTE----ETTSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCC
T ss_pred ccCeeCCe----ecccccCccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcc
Confidence 77643322 122224567788899999765 457777777755433321110 000000000000000000011112
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC-----ceEEEEEEcCCcchhhhhhhhccc
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH-----FAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
..+....+.+++.......++++.++..++++++.+.|.+++...+..... .....+.+....
T Consensus 232 ~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 299 (376)
T d1mdoa_ 232 YKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEAR------------ 299 (376)
T ss_dssp CBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHH------------
T ss_pred cccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccccc------------
Confidence 223333334444444456778888999999999999999987665543321 111222221100
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEE---EEeE--------E-C---------CEeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYM---THAV--------L-G---------GIYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~--------~-~---------~~~~iRis~~~~~~t~edi~~li~~l 297 (310)
......++.+.|.++|+-.. .+.. . . ....+.+- .++..|++||++++++|
T Consensus 300 -------~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP-~~~~lt~~ei~~I~~~i 371 (376)
T d1mdoa_ 300 -------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP-LFPDMTESDFDRVITAL 371 (376)
T ss_dssp -------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC-CCTTCCHHHHHHHHHHH
T ss_pred -------chhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEcc-CCCCCCHHHHHHHHHHH
Confidence 00001356777777764211 0100 0 0 02356665 45778999999999999
Q ss_pred HHHH
Q 046506 298 QEHL 301 (310)
Q Consensus 298 ~~~~ 301 (310)
++++
T Consensus 372 ~~i~ 375 (376)
T d1mdoa_ 372 HQIA 375 (376)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.57 E-value=4.6e-14 Score=128.91 Aligned_cols=252 Identities=12% Similarity=0.051 Sum_probs=151.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccc
Q 046506 12 NFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 12 ~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
.++++++++.+++.+|+++++.++......+..+.+++++.++|++|.+.+ +++|+++|++||+++++|.+++...+
T Consensus 156 ~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~ 235 (428)
T d1iaya_ 156 QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF 235 (428)
T ss_dssp EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCC
T ss_pred eEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccccccc
Confidence 388999988777899999999998776666656678888899999999877 78899999999999999999975543
Q ss_pred cChhhhh---hhc----CCCC--CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 89 ICPEFRH---FID----GVEG--ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 89 ~~~~~~~---~~~----~~~~--~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
..+.+.. ... .... --.+..|..|.++.| .-+|+++..++.. .+.+.....+.....
T Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l-~~~~~~~~~~~~~~~------------ 302 (428)
T d1iaya_ 236 DTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDV-VNCARKMSSFGLVST------------ 302 (428)
T ss_dssp SSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHH-HHHHHHHHTTSCCCH------------
T ss_pred CcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccch-hhhhhhhhccccccc------------
Confidence 3221110 000 0001 125678999988765 4577776655543 233211101100000
Q ss_pred eeccCCCcchHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 159 QITLSRRFRSLKLWFVLR--NYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.....+.+.+. ......+++..++..+..+.+.+.|+. +|+++..+.....+.+.+.+...
T Consensus 303 -------~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~--------- 365 (428)
T d1iaya_ 303 -------QTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-VGIKCLKNNAGLFCWMDLRPLLR--------- 365 (428)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCBCCCSSSSEEEEECGGGCS---------
T ss_pred -------ccccchhhhhhhhccccccccccccccchhHHHHHHHHHh-CCCEEecCCcceEEEEECccccc---------
Confidence 00111111110 011223455566666777888888876 48887644344455555553210
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeE---ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAV---LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
... ..-..++.++|.++.++.+.|.. ..+.+++|+|+. ..++++++..++.|++++.
T Consensus 366 ---~~~----~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a--~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 366 ---EST----FDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp ---SSS----HHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHHH
T ss_pred ---cCC----CCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC--CCCHHHHHHHHHHHHHHHh
Confidence 000 11123566667665445555432 234689999965 3567789988888887663
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.56 E-value=2.8e-13 Score=122.34 Aligned_cols=247 Identities=9% Similarity=0.023 Sum_probs=155.9
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
.+..+++++ ++.||.|++++...+.+ |.+|++-. + ..-...|+++++++|++.|++|++|.||-+|.+....
T Consensus 155 ~~~y~v~~~-~~~IDyd~l~~~a~~~k-----PklIi~G~-S-~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~ 226 (470)
T d1rv3a_ 155 SMAYKVNPD-TGYIDYDRLEENARLFH-----PKLIIAGT-S-CYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGV 226 (470)
T ss_dssp EEEECBCTT-TCSBCHHHHHHHHHHHC-----CSEEEECC-S-SCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTS
T ss_pred eeEEEEecc-cCcccHHHHHHHHHhhC-----cceEeech-h-hccccCCHHHHHHHHhccCCeEEecchhhhhhccccc
Confidence 566777875 46999999999998763 76665533 2 2344578999999999999999999999877655443
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchh-HHhhhcc--CCccccccccccccccCC-CCceeccCCCcc-
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD-LVNSLST--NPEYLKNKATESKQVVDY-KDWQITLSRRFR- 167 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~-~~~~~~~--~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~- 167 (310)
+... +.++|+++.+.||+|.+|.| |+++.++... ....... ...|... ++. ..-++|++-...
T Consensus 227 ~~sP---l~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~--------i~~avFPg~qggph~~~ 294 (470)
T d1rv3a_ 227 VPSP---FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESL--------INSAVFPGLQGGPHNHA 294 (470)
T ss_dssp SCCG---GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHH--------HHHHHTTTTCCSCCHHH
T ss_pred cCCh---hheeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHH--------HhhhcCccccccchhhH
Confidence 3322 23689999999999999986 6666665410 0000000 0000000 000 000223333323
Q ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-CCCceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 168 SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
.++.+.++.......+.+..++..++|+.|.+.|.+. |++++. ..+..++.+.+.+.++.
T Consensus 295 IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~g~~------------------ 355 (470)
T d1rv3a_ 295 IAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTD------------------ 355 (470)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCC------------------
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeecccCCc------------------
Confidence 3445556666556678999999999999999999986 999985 35677777777653211
Q ss_pred HHHHHHHHHHHHhcCcEEEEE-eEEC-----CEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINASGKAYMTH-AVLG-----GIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 247 ~~~~~~l~~~l~~~g~~~~~~-~~~~-----~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
. .+..+.|.+.|+ .+.- ..+. ....||+... .....++|+..+-+-|.+.+.
T Consensus 356 g---~~ae~~Le~~gI-~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 356 G---GRAEKVLEACSI-ACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp H---HHHHHHHHHTTE-ECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHcCc-EECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1 234444555554 3332 1111 2467999732 345677999888888877664
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=7.5e-14 Score=124.44 Aligned_cols=251 Identities=13% Similarity=0.050 Sum_probs=145.9
Q ss_pred eecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
+..|.. ++.++.+. ++.+.+|++.+++.+.+.+ +.++++...+|++|.+.+ +++|+++|+++|+++++
T Consensus 100 ~~~g~~---~~~v~~~~~~~~~~~d~~~~~~~~~~~~-----~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~ 171 (361)
T d1d2fa_ 100 EGNQRT---VMPVALEKQADGWFCDMGKLEAVLAKPE-----CKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 171 (361)
T ss_dssp HHTTCE---EEEEECEECSSSEECCHHHHHHHHTSTT-----EEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred Hhhcce---EEeecccccccccccccccchhhcccCC-----ceeEEecccccccccccchhhhhhhhhhhhhhheeeee
Confidence 345555 77777654 2346799999999985532 557888889999998766 77899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|+++....+..............-.++..++.|.++.| ..+|++++.+................
T Consensus 172 De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~--------------- 236 (361)
T d1d2fa_ 172 DEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDG--------------- 236 (361)
T ss_dssp ECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSC---------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcccccc---------------
Confidence 99996544322211111111111234667888877654 46777777655332222110000000
Q ss_pred eeccCCCcchHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLR--NYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
.+. .....+.+++. ....+..++......++.+.+.+.+.+ .+++.+..+..+..+.+.+.+...
T Consensus 237 ---~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~-------- 304 (361)
T d1d2fa_ 237 ---LSS-PSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNI-------- 304 (361)
T ss_dssp ---CCS-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCC--------
T ss_pred ---ccc-chhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCCC--------
Confidence 000 11111122221 123455666667677777777776653 456665533333344455543211
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
+ ..++.++|.++.++.+.|. .. .+.+++|+|+. +++|+++..++.|++.+++++
T Consensus 305 ------~-------~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~---~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 305 ------D-------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG---CPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp ------C-------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHHHHC
T ss_pred ------C-------HHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc---CCHHHHHHHHHHHHHHHHhcC
Confidence 1 1356777766533444443 21 24568999953 578899999999998887763
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=6.8e-15 Score=128.81 Aligned_cols=238 Identities=14% Similarity=0.082 Sum_probs=136.4
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccC---ChHHHHHHHHHhCcEEEeecccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVD---TLKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~---pl~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
+..++.+ .+..|++.+++.|...+.....+..++.+.. ++..|.+. ++++|+++|++||+++++|++++.+..
T Consensus 100 ~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~ 176 (343)
T d1m6sa_ 100 PHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNAS 176 (343)
T ss_dssp EEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHH
T ss_pred eeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccc
Confidence 4444444 3478999999999876654433444444444 45555554 466788888999999999999876643
Q ss_pred cChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcch
Q 046506 89 ICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRS 168 (310)
Q Consensus 89 ~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (310)
....... .......+.++++.+|++++..+.+++. .+............+.. .......
T Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~------------------~~~~~~~ 235 (343)
T d1m6sa_ 177 IASGVPV-KEYAGYADSVMFCLSKGLCAPVGSVVVG--DRDFIERARKARKMLGG------------------GMRQAGV 235 (343)
T ss_dssp HHHCCCH-HHHHHTCSEEEEESSSTTCCSSCEEEEE--CHHHHHHHHHHHHHHTC------------------CCSSTHH
T ss_pred cccccch-hhhccccccccccccccccccccccccc--cHHHHhhhHhhCccccc------------------ccchhHH
Confidence 3211100 0011136777888888877765544443 33322221111000000 0000111
Q ss_pred -HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 169 -LKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 169 -~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
.+.+... ........+...++.+++.+.+.++.+.....+..++++.+.+.+...
T Consensus 236 ~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------- 291 (343)
T d1m6sa_ 236 LAAAGIIA----LTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKV-------------------- 291 (343)
T ss_dssp HHHHHHHH----HHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSS--------------------
T ss_pred HHHhhhhh----hhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcc--------------------
Confidence 1111111 111222333444555566666665555555555677888887765321
Q ss_pred HHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
...++.+.|.++|++ +.+. +..++|++++ +++|+||||+++++|+++++++
T Consensus 292 -~a~~l~~~L~~~Gi~-v~~~---~~~~iRi~~~-~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 292 -NAHGFIEALRNSGVL-ANAV---SDTEIRLVTH-KDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp -CHHHHHHHHHHHTEE-CEEE---ETTEEEEECC-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHCCCE-EecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 124677888888854 4332 3457999955 7899999999999999999876
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.3e-16 Score=140.19 Aligned_cols=239 Identities=10% Similarity=-0.065 Sum_probs=141.8
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPE 92 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~ 92 (310)
++.+..++++ ..+.+.++..+.+. +.++++++.+|.+|+..|++++. ++.+++.+++|++++.+..+.+.
T Consensus 115 ~~~~~~~~~~--~~~~~~~~~~~~~~------~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~ 184 (360)
T d1bjna_ 115 NVFDAKVTVD--GLRAVKPMREWQLS------DNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDV 184 (360)
T ss_dssp EEEECEEEET--TEEEECCGGGCCCC------SSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCG
T ss_pred ceeeccccCC--CcchhhhhhhhccC------CceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeee
Confidence 4444444322 45555555555443 23677778888899988888774 67789999999999988887764
Q ss_pred hhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc--chHH
Q 046506 93 FRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF--RSLK 170 (310)
Q Consensus 93 ~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 170 (310)
. .+|++.+++||+++.|.|.+++++.+... ... .....+..... ....... ...... ....
T Consensus 185 ~--------~~dv~~~ss~k~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~ 247 (360)
T d1bjna_ 185 S--------RYGVIYAGAQKNIGPAGLTIVIVREDLLG-KAN-IACPSILDYSI-----LNDNGSM--FNTPPTFAWYLS 247 (360)
T ss_dssp G--------GCSEEEEETTTTTSSTTCEEEEEEGGGCS-CCC-TTSCGGGCHHH-----HHHTTTC--SSCCCHHHHHHH
T ss_pred c--------cceeEEEEcccccccCCCceeEeeehhhh-hcc-ccCCcchhhHH-----HHhhhhh--ccccccchHHHH
Confidence 2 38999999999999999998888765532 111 10001100000 0000000 000111 1111
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC---CceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR---HFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
...........+.+...++..+.++.....+...........+ ...+++|.+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~--------------------- 306 (360)
T d1bjna_ 248 GLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA--------------------- 306 (360)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG---------------------
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc---------------------
Confidence 1222222333456667777777777777777665444433222 2457889886521
Q ss_pred HHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
..+++.+.+.++|.....+. +..+.+|+|+. .++|+|||++|+++|+++.++
T Consensus 307 -~~~~~~~~l~~~Gi~~~~G~--~~~g~~Ris~~-~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 307 -LDKLFLEESFAAGLHALKGH--RVVGGMRASIY-NAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp -GHHHHHHHHHHTTEECCBCC--TTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHCCCEeecCC--CccCeEEEEec-CCCCHHHHHHHHHHHHHHHHH
Confidence 11456677777775333221 11234899976 479999999999999997643
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=3.2e-14 Score=128.05 Aligned_cols=245 Identities=12% Similarity=0.059 Sum_probs=144.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|.++++++.+|+++|++++++. +.++++..++|++|.+.+ +++|+++|++||+++++
T Consensus 127 ~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~ 197 (388)
T d1gdea_ 127 VILAGGK---PVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 197 (388)
T ss_dssp HHHHTCE---EEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCE---EEEeecccccCCCCCHHHHHHhCccC------CeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556776 99999987656789999999998654 457888888999999866 77799999999999999
Q ss_pred ecccccccccChhhhhhhc--CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.+++.............. ....-.++..|..|.++.| .-+|+++..++ .+....... ......
T Consensus 198 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~-~~~~~~~~~-~~~~~~----------- 264 (388)
T d1gdea_ 198 DEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSW-IIERMVKFQ-MYNATC----------- 264 (388)
T ss_dssp ECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHH-HTTTCS-----------
T ss_pred EcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeecc-chhhhhhcc-cccccc-----------
Confidence 9999754432221111111 1101235678999998755 55777765433 332221100 000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhh
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGV----ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLK 232 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~ 232 (310)
.......++...+.. .......++..+..+.+.+.|... ++....+..+..+.+.+.+...
T Consensus 265 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~~~~~----- 329 (388)
T d1gdea_ 265 ---------PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGL----- 329 (388)
T ss_dssp ---------CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGTC-----
T ss_pred ---------ccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECCCCCC-----
Confidence 011111112222211 223455556666777778888765 5555433334444444433110
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 233 TKYENSLLSEEERINEFNRELLESINASGKAYMTHA-VL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.+++.++.++.+.|. .. .+.+++|+|+. +++|+++..++.|++++++
T Consensus 330 ---------~-------~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~---~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 330 ---------T-------SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA---TAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp ---------C-------HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred ---------C-------HHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 0 1345565555433444443 22 23578999964 4688899999998887765
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=9.8e-15 Score=134.91 Aligned_cols=251 Identities=11% Similarity=0.016 Sum_probs=129.8
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-ccc---CChHHHHHHHHHhCcEEEeecccccccccChhhh----
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAV---DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR---- 94 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~---- 94 (310)
.+.+|+++|+++|.+.+... ..++++....+.. |.+ +++++|+++|++||++||+|+||.++.......+
T Consensus 164 ~~~~d~~~l~~~i~~~~~~~--~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~ 241 (467)
T d2v1pa1 164 KGNFDLEGLERGIEEVGPNN--VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241 (467)
T ss_dssp TTCBCHHHHHHHHHHHCGGG--CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGG
T ss_pred ccCCCHHHHHHHHhhcCccc--cceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccc
Confidence 34799999999998765432 2244444444433 443 4588999999999999999999976543221110
Q ss_pred ------hhh-cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcc
Q 046506 95 ------HFI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 167 (310)
Q Consensus 95 ------~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (310)
+.. .-...+|+++++.||.+++|.| |++..++.... ........+..... +. ...++ ..
T Consensus 242 ~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~-~~~~~~~~~~~~~~----~~------~~~~~--~~ 307 (467)
T d2v1pa1 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFF-DVYTECRTLCVVQE----GF------PTYGG--LE 307 (467)
T ss_dssp TTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGH-HHHHHHHHHHHHTT----SS------CCCCC--CC
T ss_pred cCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhh-hHHHhhcccccccc----cC------cchhh--hH
Confidence 000 0023589999999999998754 55555555322 11100000000000 00 00011 11
Q ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 168 SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
...+.+....+.....++..++..++++++.++|.+. ++.+. ++....+.+...... ... ........
T Consensus 308 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~ 375 (467)
T d2v1pa1 308 GGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLL-----PHI-----PADQFPAQ 375 (467)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHS-----TTS-----CGGGCHHH
T ss_pred HHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCccceeecchhhc-----CCc-----chhhhhhH
Confidence 1112222111212222456667778899999999876 44443 222222222111100 000 00000111
Q ss_pred HHHHHHHHHHHhcCcEEEEEe-------------EECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESINASGKAYMTHA-------------VLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 248 ~~~~~l~~~l~~~g~~~~~~~-------------~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
. ...+.+.+.|...+... .+.....+|++++....|+||||+++++|+++.++.
T Consensus 376 ~---~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~ 442 (467)
T d2v1pa1 376 A---LACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp H---HHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred H---HHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 12233344454322211 112356899997654569999999999999998754
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.52 E-value=8.1e-13 Score=118.94 Aligned_cols=234 Identities=10% Similarity=0.050 Sum_probs=152.0
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhh
Q 046506 15 AIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFR 94 (310)
Q Consensus 15 ~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~ 94 (310)
..++++. ++.||.+++++...+.+ |.+|++-.. ..-...|+++++++|++.|++|++|.||-+|.+....+.
T Consensus 153 ~Y~~d~~-~~~IDyd~~~~~a~~~k-----PklIi~G~S--~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~ 224 (463)
T d2a7va1 153 PYKLNPK-TGLIDYNQLALTARLFR-----PRLIIAGTS--AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 224 (463)
T ss_dssp -CCBCTT-TCSBCHHHHHHHHHHHC-----CSEEEECCS--SCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred eeeccCC-CCcCcHHHHHHHHhhcC-----CceEEeccc--ccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhc
Confidence 3445543 46899999999998863 766655332 334457899999999999999999999988876654443
Q ss_pred hhhcCCCCCCeeeeecccccccccceEEEEEeCchh-------------HHhhh--ccCCccccccccccccccCCCCce
Q 046506 95 HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSD-------------LVNSL--STNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 95 ~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~-------------~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
.. +.++|+++.+.||+|.+|. +|+++.++... +.+.+ ...| .
T Consensus 225 sP---~~~aDvvt~tTHKTlrGPr-gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFP-------------------g 281 (463)
T d2a7va1 225 SP---FKHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFP-------------------S 281 (463)
T ss_dssp CG---GGTCSEEEEESSGGGCSCS-CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTT-------------------T
T ss_pred Ch---hhhhhhhhchhhhhhcCCC-ceEEEEcccccccccccCccchhHHHHHhhhhcCc-------------------c
Confidence 32 2369999999999999997 45666665310 00100 0011 1
Q ss_pred eccCCCcc-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhcc
Q 046506 160 ITLSRRFR-SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
+|++-... .++.+.+++......+++..++..++|+.|.+.|.+. |++++.. .+..++.+.+.+..+.
T Consensus 282 ~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~~--------- 351 (463)
T d2a7va1 282 LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLD--------- 351 (463)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCC---------
T ss_pred cchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeeccccCCC---------
Confidence 23333323 3444455555445678899999999999999999986 9999864 5677888887664321
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE-----CCEeEEEEEcc---CCCCCHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHA-VL-----GGIYAIRFAAG---ATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~-----~~~~~iRis~~---~~~~t~edi~~li~~l~~~~~ 302 (310)
. ....+.|.+.| +.+.-. .+ .....||+... .....++|+..+-+-|.+.+.
T Consensus 352 ---------G---~~ae~~Le~~g-I~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 352 ---------G---ARAERVLELVS-ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp ---------H---HHHHHHHHHTT-EECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------H---HHHHHHHHhcc-CccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1 23445555555 343321 11 12456899833 223456888888887776553
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.50 E-value=1.5e-13 Score=118.72 Aligned_cols=225 Identities=14% Similarity=0.057 Sum_probs=137.8
Q ss_pred ccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccC---ChHHHHHHHHHhCcEEEeecccccccccChhhhhhh-cCC
Q 046506 25 GLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD---TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI-DGV 100 (310)
Q Consensus 25 ~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~---pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~-~~~ 100 (310)
..+.+...++..........+..+++...++..|.+. ++..+.++|+++|+++|+|.+++.+........... ...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~ 190 (340)
T d1svva_ 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA 190 (340)
T ss_dssp CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH
T ss_pred cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccc
Confidence 4555655666554433333344555555556666654 466778999999999999999977665543211000 000
Q ss_pred CCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-cchHHHHHHHHHhC
Q 046506 101 EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYG 179 (310)
Q Consensus 101 ~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 179 (310)
...+....+++|..+.+. +................ . ....+.. .......+++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~~~~aa~~~~~~ 248 (340)
T d1svva_ 191 RLTDMFYIGATKAGGMFG--EALIILNDALKPNARHL----I----------------KQRGALMAKGWLLGIQFEVLMK 248 (340)
T ss_dssp HHCSEEEEECTTTTCSSC--EEEEECSGGGCTTHHHH----H----------------HHTTCCCTTTHHHHHHHHHHTS
T ss_pred ccceeeecCCcccccccc--ccccccchhhhhhhhhh----c----------------ccccCccchhhHHHHHHHHHhh
Confidence 125667777777665543 22333333211110000 0 0001111 11222233333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 180 ~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
...+....++...+++++.+.|.+. |++++.+++++++.+.+.+ +..+.|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~---------------------------~~~~~l~~ 300 (340)
T d1svva_ 249 DNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN---------------------------TMIAELNN 300 (340)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH---------------------------HHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH---------------------------HHHHHHHH
Confidence 5677888889999999999999885 8998878888888776643 23455666
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
++.....+....+.+++|+|+ +++||+||||+++++|+++
T Consensus 301 ~~~~~~~~~~~~~~~~vR~s~-~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 301 DFDMYTVEPLKDGTCIMRLCT-SWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp TEECEEEEEETTTEEEEEEEC-CTTCCHHHHHHHHHHHHHC
T ss_pred hhhhhcccccCCCCcEEEEEC-CCCCCHHHHHHHHHHHhcC
Confidence 666565666667899999995 5899999999999999874
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.49 E-value=1.6e-13 Score=126.53 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=133.5
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcc-ccc---CChHHHHHHHHHhCcEEEeecccccccccChh------
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAI-TAV---DTLKPLCDVAKQFGIWVHVDAAYAGSACICPE------ 92 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~-G~~---~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~------ 92 (310)
.+.+|+++|+++|++..... +..++.+..++.. |.+ .++++|+++|++||++||+|+||..+......
T Consensus 163 ~~~~d~~~l~~~i~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~ 240 (465)
T d1ax4a_ 163 KGDFDIKKLKENIAQHGADN--IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 240 (465)
T ss_dssp TTCBCHHHHHHHHHHHCGGG--EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG
T ss_pred cCccCHHHHHHHHHhhcccc--ccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccc
Confidence 46899999999998754321 3344444444333 333 34789999999999999999998654322110
Q ss_pred ----hhhhh-cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhh-ccCCccccccccccccccCCCCceeccCCCc
Q 046506 93 ----FRHFI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSL-STNPEYLKNKATESKQVVDYKDWQITLSRRF 166 (310)
Q Consensus 93 ----~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (310)
..... +-...+|+++++.||.+++|. .|+++.++...+.... ...+.+..... .++ .
T Consensus 241 ~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~-~g~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~ 303 (465)
T d1ax4a_ 241 KNATIKEVIFDMYKYADALTMSAKKDPLLNI-GGLVAIRDNEEIFTLARQRCVPMEGFVT--------------YGG--L 303 (465)
T ss_dssp TTCCHHHHHHHHGGGCSEEEEETTSTTCCSS-CEEEEESSCHHHHHHHHHHHHHHTCSTT--------------TTT--C
T ss_pred cccchhhhccccccccceeEeecccCccccc-ceeEeecchHHHHHhhhccccccccCCC--------------cch--h
Confidence 00000 001247999999999988775 4777777653221111 00000000000 000 0
Q ss_pred chHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHH
Q 046506 167 RSLKLWFVLRN-YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEER 245 (310)
Q Consensus 167 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (310)
.+.. ..++.. +.....+...++..++++++++.|.+. +++++.++....+.+....... . . ....
T Consensus 304 ~~~~-~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~-~-------~--~~~~-- 369 (465)
T d1ax4a_ 304 AGRD-MAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVP-Q-------I--PGDQ-- 369 (465)
T ss_dssp CHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCT-T-------S--CGGG--
T ss_pred hHHH-HHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcC-C-------C--cccc--
Confidence 1111 111111 111112445566677888999999886 7777656555555444332100 0 0 0000
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeE-------------ECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 246 INEFNRELLESINASGKAYMTHAV-------------LGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 246 ~~~~~~~l~~~l~~~g~~~~~~~~-------------~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
........+.+.+.|...+.... ......+|+++.....|+||||+++++|+++.++..
T Consensus 370 -~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 370 -FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp -CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred -chhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00112233334455543322111 012458999865333589999999999999987653
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=5.1e-14 Score=126.65 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=145.1
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++.+.+.+|++++++++++. +.++++..++|++|.+.+ +++|+++|++||++++.
T Consensus 132 ~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~ 202 (382)
T d1b5pa_ 132 VRFAGGV---VVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202 (382)
T ss_dssp HHHTTCE---EEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCe---EEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEE
Confidence 3456665 88999877556789999999988654 447778888999999866 77799999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|.+++...+........ .....--++..|+.|.++.| .-+|+++. +++.++..............
T Consensus 203 De~y~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~~~~GlR~G~~~~-~~~~i~~~~~~~~~~~~~~~------------ 268 (382)
T d1b5pa_ 203 DEIYEHLLYEGEHFSPG-RVAPEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPD------------ 268 (382)
T ss_dssp ECTTTTCBSSSCCCCGG-GTCTTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCC------------
T ss_pred EccccceecCCCCCCHH-HcCCCCEEEEecchhhccCcHhheEEEEE-CHHHHHHHHHHHHhcccCcc------------
Confidence 99997554433222111 11112235667899998765 44787765 44444332211000000000
Q ss_pred eeccCCCcchHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 159 QITLSRRFRSLKLWFVLRN--YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
......+...+.. ..........+....+.+.+.+.+.+. ++++..+..+..+.+.+.+...
T Consensus 269 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~~~~~~~--------- 332 (382)
T d1b5pa_ 269 ------TIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAP--------- 332 (382)
T ss_dssp ------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCS---------
T ss_pred ------cccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEeCCCCCC---------
Confidence 0001111111111 112234445555666677777777764 6766534344455566654311
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
+ ...+.+.+.+.|....++......+.+|+++. +++|+++..++.|+++
T Consensus 333 -----~-------~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~---~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 333 -----D-------EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEENLRKALERFARV 381 (382)
T ss_dssp -----S-------HHHHHHHHHHTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHGGGG
T ss_pred -----C-------HHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc---CCHHHHHHHHHHHHHh
Confidence 1 13456667777765555444455678999964 4688888888777654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=9.1e-14 Score=124.20 Aligned_cols=237 Identities=10% Similarity=-0.014 Sum_probs=142.4
Q ss_pred ecCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 5 IVGIDVKNFRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
.+|.. ++.++.+. .+.+.+|++.+++++++. +.+++++.++|++|.+.+ +++|+++|++||+++++|
T Consensus 121 ~~g~~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D 191 (368)
T d1v2da_ 121 LAGAK---ARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191 (368)
T ss_dssp HTTCE---EEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hcCCc---cceeccccccccccCCHHHHHHhhccC------ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeec
Confidence 34554 77776643 235689999999999765 347888889999999887 788999999999999999
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
++++............... .....+..+..|.++.| .-+|++. .+++.+.............
T Consensus 192 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sk~~~~~G~R~g~~~-~~~~~~~~~~~~~~~~~~~--------------- 254 (368)
T d1v2da_ 192 EVYDELYYGERPRRLREFA-PERTFTVGSAGKRLEATGYRVGWIV-GPKEFMPRLAGMRQWTSFS--------------- 254 (368)
T ss_dssp CTTTTCBSSSCCCCHHHHC-TTTEEEEEEHHHHTTCGGGCCEEEE-CCTTTHHHHHHHHHHHTSS---------------
T ss_pred hhhhhhccccccccccccc-ccccceeeccccccccccccccccc-ccccccchhhhhhhccccc---------------
Confidence 9986544333221111111 12344556777666655 3356654 4444432221110000000
Q ss_pred eccCCCcchHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 160 ITLSRRFRSLKLWFVLRNYG-VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
........+..++.... ...++...+...++.+++.+.|++. |+++..+..+..+.+.++..+
T Consensus 255 ---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~~------------ 318 (368)
T d1v2da_ 255 ---APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGWD------------ 318 (368)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTCC------------
T ss_pred ---cccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCCccH------------
Confidence 00011112222322211 2356777777888889999999986 888875555566666665431
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
..+.+.+.|....++... .+.+++|+|+. +++|+++.+++.|+++
T Consensus 319 --------------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~---~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 319 --------------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC---KTEEELHLALERLGRV 367 (368)
T ss_dssp --------------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC---SCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhCCEEEEechhhCCCCCCCCEEEEEec---CCHHHHHHHHHHHHHh
Confidence 123344566444332211 23578999954 4789999999999876
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.47 E-value=6.4e-13 Score=118.70 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=121.9
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
+|+. +.+++. .|+++++++|+++| .+|.+.+++|++..+.||++|+++||++|+.++||.+++.
T Consensus 122 ~Gi~---~~~~d~-------~d~~~~~~ai~~~t------~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~at 185 (392)
T d1gc0a_ 122 FGVK---LRHVDM-------ADLQALEAAMTPAT------RVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCT 185 (392)
T ss_dssp GTCE---EEEECT-------TCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTH
T ss_pred CCcc---cccCCc-------cCHHHHHHhCCCCC------eEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccC
Confidence 4665 666543 35799999998764 4899999999999999999999999999999999999976
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccc--cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTT--LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+.+.-|.. .++|++.-|.+|++++- .-.|++..++. .+.+..... ... ..|
T Consensus 186 P~~~~Pl~-------~GaDivihS~TKyi~Ghsd~~~G~v~~~~~-~~~~~r~~~---~~~----------------~~G 238 (392)
T d1gc0a_ 186 PYLQRPLE-------LGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQG---LKD----------------MTG 238 (392)
T ss_dssp HHHCCGGG-------GTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTH---HHH----------------HTC
T ss_pred ccccChHH-------hCCCEEEEecceeecCCcccccccccchhH-HHHHHHHHH---HHH----------------ccC
Confidence 66543321 16999999999999862 22344544443 332211000 000 001
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
.......+|..++ |.+.+..++++..++++.+.+.|++.|.++-+.-| ..++++|.+.+
T Consensus 239 ~~~~p~da~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~ 314 (392)
T d1gc0a_ 239 AVLSPHDAALLMR--GIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 314 (392)
T ss_dssp CCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred CcCChhhHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC
Confidence 1123445565554 66789999999999999999999999998743211 25678888864
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.1e-12 Score=116.85 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=118.3
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.|+++++.++++++ .+|.+..++|++..+.||++|+++||++|++++||.+++.+.+.-+.. .++|+
T Consensus 123 ~d~~~~~~~~~~~t------~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~-------~GaDi 189 (384)
T d1cs1a_ 123 GDEQALRAALAEKP------KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLA-------LGADL 189 (384)
T ss_dssp TCHHHHHHHHHTCC------SEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG-------GTCSE
T ss_pred CCHHHHHhhccccc------cEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccccc-------cCCCE
Confidence 46788999988764 389999999999999999999999999999999999997665544321 16999
Q ss_pred eeeeccccccccc--ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTL--DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~--g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
+.-|..|++++-. -.|++..+++....+.... .. ..|-......+|..++ |.+.+
T Consensus 190 VvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~----~~-----------------~~G~~~~p~~a~ll~r--gL~TL 246 (384)
T d1cs1a_ 190 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW----AN-----------------NIGVTGGAFDSYLLLR--GLRTL 246 (384)
T ss_dssp EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH----HH-----------------HHTCBCCHHHHHHHHH--HHTTH
T ss_pred EEEccccccccCCCcccccccCCchhhhhhhhhh----hh-----------------hhhhccccccHHHHhh--ccchh
Confidence 9999999998742 2345555555433221100 00 0011123445565554 66789
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcCC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSPS 225 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~~ 225 (310)
.-++++..+++..+.+.|++.|.+.-+.-| ..++++|.+.+.
T Consensus 247 ~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~ 305 (384)
T d1cs1a_ 247 VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD 305 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecch
Confidence 999999999999999999999999654322 256888888763
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.45 E-value=1.9e-12 Score=115.72 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=123.4
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
+|+. +.+++. -|++.++++|+++ +.+|.+..++|++..+.||++|+++||++|++++||.+++.
T Consensus 126 ~Gi~---~~~vd~-------~d~~~~~~~i~~~------Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~at 189 (397)
T d1y4ia1 126 FGIN---VRFVDA-------GKPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 189 (397)
T ss_dssp TTCE---EEEECT-------TSHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred CceE---eeccCC-------CCHHHHHHhcCCC------CcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccC
Confidence 4665 666654 3579999999775 45899999999999999999999999999999999999976
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccc--cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTT--LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLS 163 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
+...-|.. .++|++.-|..|++++- .-.|++.. +++.+.+.... .+... .|
T Consensus 190 P~~~~Pl~-------~GaDivihS~TKyi~Ghsdvl~G~v~~-~~~~~~~~r~~--~~~~~-----------------~G 242 (397)
T d1y4ia1 190 PYCQQPLQ-------LGADIVVHSVTKYINGHGDVIGGIIVG-KQEFIDQARFV--GLKDI-----------------TG 242 (397)
T ss_dssp TTTCCGGG-------GTCSEEEEETTTTTTCSSCCCCEEEEE-CHHHHHHHHHT--HHHHT-----------------TC
T ss_pred cccCcchh-------cCCCEEEEehhhhcCCCcceeeeccCC-CHHHHHHHHHH--HHHhC-----------------cC
Confidence 65544422 15999999999999873 22344444 44333321100 00000 01
Q ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcC
Q 046506 164 RRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSP 224 (310)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~ 224 (310)
-...+..+|..++ |.+.+.-++++.+++|..+.+.|++.|.++-+.-| ..++++|.+.+
T Consensus 243 ~~l~p~~a~l~~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~ 318 (397)
T d1y4ia1 243 GCMSPFNAWLTLR--GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG 318 (397)
T ss_dssp CCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CcCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC
Confidence 1124456666654 56788999999999999999999999999644322 26788998875
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=2e-13 Score=123.31 Aligned_cols=252 Identities=10% Similarity=0.059 Sum_probs=148.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|.++.+++.+|++++++.+.+. +.+++++.++|++|.+.+ +++|+++|++||++++.
T Consensus 134 ~~~~g~~---~v~v~~~~~~~~~~d~~~~~~~~~~~------~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (395)
T d1xi9a_ 134 VKFYGGK---PVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVIS 204 (395)
T ss_dssp HHHTTCE---EEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhcCCE---EEEEeccccccccchHHHHHHhhccc------ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEe
Confidence 3456665 88888776556789999999998654 457888889999999877 67899999999999999
Q ss_pred ecccccccccChhhhhhhcCCCCCC-eeeeecccccccc-cceEEEEEeCch-hHHhhhccCCccccccccccccccCCC
Q 046506 80 DAAYAGSACICPEFRHFIDGVEGAD-SFSLNAHKWFFTT-LDCCCLWVKDPS-DLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~~~~~~~D-~~~~~~hK~l~~p-~g~g~l~v~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
|.++.......+....... ..... ++..|..|.++.| .-+|++++.++. .+...... ...+....
T Consensus 205 De~y~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~-~~~~~~~~---------- 272 (395)
T d1xi9a_ 205 DEIYDLMTYEGEHISPGSL-TKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREA-IDRLARIR---------- 272 (395)
T ss_dssp ECTTTTCBSSSCCCCHHHH-CSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHH-HHHHHHHT----------
T ss_pred ccccccccccccccchhhc-CCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHH-HHHhhcCC----------
Confidence 9998654432211111000 01122 4557899998865 336777665442 11111000 00000000
Q ss_pred CceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 157 DWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.+.-.+....+..++. .+.+.+++..+...++.+.+.+.|.+++++.+..+..+..+.+.+.....
T Consensus 273 ----~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~--------- 338 (395)
T d1xi9a_ 273 ----LCPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW--------- 338 (395)
T ss_dssp ----CCSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC---------
T ss_pred ----CCcCHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCC---------
Confidence 0000011122222222 23467788888888999999999998877766533334455555543210
Q ss_pred cccchhHHHHHHHHHHHHHHHH-hcCcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESIN-ASGKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+ ..++..++. +.|.+...+... .+.+++|+++. +++|+++..++.|++++++
T Consensus 339 ----~~-------~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~---~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 339 ----KN-------DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp ----SS-------HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred ----CC-------HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHhc
Confidence 01 023344444 456544433322 23568999954 5688888888888877654
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=5.6e-14 Score=125.75 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCc-ccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTA-ITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~-~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
|+++|+++|+++| .++++.+++|+ .+.+.++++|+++|++||+++++|++|+.+.+.......... .++|+
T Consensus 122 d~e~l~~~i~~~t------k~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~--~~~di 193 (366)
T d2aeua1 122 KVGEILNKIDKDT------LVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK--LGADL 193 (366)
T ss_dssp CHHHHHTTCCTTE------EEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH--HTCSE
T ss_pred CHHHHHHhcCCCc------eEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhh--cCceE
Confidence 6789999988764 47777776554 556789999999999999999999999766443221111011 14899
Q ss_pred eeeecccccccccceEEEEEeCchhHHh
Q 046506 106 FSLNAHKWFFTTLDCCCLWVKDPSDLVN 133 (310)
Q Consensus 106 ~~~~~hK~l~~p~g~g~l~v~~~~~~~~ 133 (310)
+++|.||+++++ +.|+++.+++ .+.+
T Consensus 194 ~~~S~sK~~~g~-~~G~i~~~~~-~i~~ 219 (366)
T d2aeua1 194 VVTSTDKLMEGP-RGGLLAGKKE-LVDK 219 (366)
T ss_dssp EEEETTSSSSSC-SCEEEEEEHH-HHHH
T ss_pred EEeccccccccc-ceeEEEecHH-HHHH
Confidence 999999998876 5677766544 4433
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.44 E-value=7e-14 Score=124.27 Aligned_cols=211 Identities=9% Similarity=-0.021 Sum_probs=113.9
Q ss_pred EeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCch
Q 046506 50 ATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPS 129 (310)
Q Consensus 50 ~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~ 129 (310)
.++.+|.+|.+.|+++|+++||++|++++||++++.++.+.+... + ++|+++++.||+ .|.|.|+++.++.
T Consensus 142 ~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~-----~-~vd~~~~~~~k~--~~~~~~~~~~~~~- 212 (360)
T d1w23a_ 142 DAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQ-----F-GMIYAGAQKNLG--PSGVTVVIVKKDL- 212 (360)
T ss_dssp EEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGG-----C-SEEEEETTTTTS--CTTCEEEEEEHHH-
T ss_pred cceeEecCCccccceeeeeccccceeeEEeecccccccccccccc-----c-cceEEeeccccc--cCCcceeeEechh-
Confidence 456777889999999999999999999999999999998887533 1 578887777775 3445555554332
Q ss_pred hHHhhhccCCccccccccccccccCCCCceeccCCCcc--hHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 046506 130 DLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR--SLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSDKR 206 (310)
Q Consensus 130 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~~~ 206 (310)
.. ......+.+...... ..... ....+.. .......+... ...+...+.++....+............
T Consensus 213 ~~-~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (360)
T d1w23a_ 213 LN-TKVEQVPTMLQYATH-----IKSDS---LYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNG 283 (360)
T ss_dssp HC-SCCTTCCGGGCHHHH-----HHTTT---CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hh-cccccCCcchhhhhh-----hhhhh---hcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 21 111111111111000 00000 0011111 11111111111 1112222333333333333333333223
Q ss_pred eE-EecCC--C-ceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccC
Q 046506 207 FE-VVFPR--H-FAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGA 282 (310)
Q Consensus 207 ~~-v~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~ 282 (310)
+. +...+ + ..+++|.+.. ....+++...+.++|.....+ +...+.+|+|+.+
T Consensus 284 ~~~~~~~~~~rS~~vvsf~i~~----------------------~~~~~~~~~~l~~~GI~~~~G--~~~~ggiRiS~~~ 339 (360)
T d1w23a_ 284 FYVGHAEKGSRSLMNVTFNLRN----------------------EELNQQFLAKAKEQGFVGLNG--HRSVGGCRASIYN 339 (360)
T ss_dssp SSEESSCGGGBCSSEEEEECSS----------------------HHHHHHHHHHHHHTTEESCBC--CTTTCSEEEECCT
T ss_pred ccccCCChhhcceeEEEEEcCC----------------------CccHHHHHHHHHHCCCeeeeC--CCccCcEEEEeeC
Confidence 33 32221 2 3478888865 222356777777887543222 1122358999764
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 046506 283 TLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 283 ~~~t~edi~~li~~l~~~~~~ 303 (310)
++|.|||+.|++.|++..+.
T Consensus 340 -~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 340 -AVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp -TSCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999987653
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.43 E-value=1.6e-12 Score=117.75 Aligned_cols=253 Identities=11% Similarity=0.066 Sum_probs=152.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|+++.+.+..+++++++.+.+. +.++++..++|++|.+.+ +++|+++|++|++++++
T Consensus 142 ~~~~G~~---~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~ 212 (412)
T d1bw0a_ 142 CKAYGIG---MHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 212 (412)
T ss_dssp HHHTTCE---EEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred hhccCcc---ccccccccccccchhhHHHHhhhhcc------ccccccccccccccccchhhhccccccccccCCeeeec
Confidence 4567777 99999988667789999999887654 457888888999999865 77899999999999999
Q ss_pred ecccccccccChhhhhhh---cCCCCC-C-eeeeecccccccc-cceEEEEEeCchh-----HHhhhccCCccccccccc
Q 046506 80 DAAYAGSACICPEFRHFI---DGVEGA-D-SFSLNAHKWFFTT-LDCCCLWVKDPSD-----LVNSLSTNPEYLKNKATE 148 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~---~~~~~~-D-~~~~~~hK~l~~p-~g~g~l~v~~~~~-----~~~~~~~~~~y~~~~~~~ 148 (310)
|.++.............. ...... . .+..+..|.++.| .-+|++++.++.. +....... .+.
T Consensus 213 De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~-~~~------ 285 (412)
T d1bw0a_ 213 DEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-MLV------ 285 (412)
T ss_dssp ECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-HHH------
T ss_pred hhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccc-ccc------
Confidence 999965543322111000 001111 1 2345788988754 5577777665421 10000000 000
Q ss_pred cccccCCCCceeccCCCcc-hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcc
Q 046506 149 SKQVVDYKDWQITLSRRFR-SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAV 227 (310)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~ 227 (310)
.+-... ...+...+.....+.+.+..++..+..+.+.+.|.+.+|+.+..+..+..+..++.....
T Consensus 286 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~ 352 (412)
T d1bw0a_ 286 -------------CGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY 352 (412)
T ss_dssp -------------TCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB
T ss_pred -------------cCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhc
Confidence 000000 111111111123456788888899999999999988889987644444455555542110
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHh-cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 228 MDKLKTKYENSLLSEEERINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
. . ..+ ..++.++|.+ .|.+...+......+++|+|+. +++++++..++.|++.+++-
T Consensus 353 ~---------~-~~~-------~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~---~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 353 R---------D-IKT-------DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT---RPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp S---------S-CCS-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred C---------C-CCC-------HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEc---CCHHHHHHHHHHHHHHHHhc
Confidence 0 0 000 1345555554 4654444444455679999964 46888888888888877653
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.40 E-value=5.2e-12 Score=113.43 Aligned_cols=254 Identities=13% Similarity=0.134 Sum_probs=152.3
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~ 85 (310)
.|.. +++++++++ ++.+|++++++.+.+.++ .|+ ..++.|...++++|.++|+++|++++.|+||+.
T Consensus 94 ~g~~---p~~~d~~~~-~~~~d~~~~~~~i~~~tk------~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ 160 (384)
T d1b9ha_ 94 LGAV---TVPVDVDAA-TYNLDPEAVAAAVTPRTK------VIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAH 160 (384)
T ss_dssp TTCE---EEEECBCTT-TCCBCHHHHHHHCCTTEE------EEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT
T ss_pred cccc---ccccccccc-ccccchhhhccccccccc------ccc---cccccccccccccchhhhhhhhhhhhhhhceec
Confidence 4554 788888875 578999999999877642 333 345678889999999999999999999999987
Q ss_pred ccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC
Q 046506 86 SACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 165 (310)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 165 (310)
+....... ....+.+.++++.++|.+.+. +.|++++++++......... .+...... ....+. +.. .|..
T Consensus 161 ga~~~g~~---~g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~-~~g~~~~~---~~~~~~-~~~-~G~n 230 (384)
T d1b9ha_ 161 GARWQGKR---VGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFL-RHSCGRPR---DDRRYF-HKI-AGSN 230 (384)
T ss_dssp TCEETTEE---GGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHH-HTBTTCCT---TCSSCC-CCS-CCCB
T ss_pred ccccCCEe---cCcccccceeccccccccccc-ccchhhhhhHHHHHHHHHHH-hcCCCCcc---cccccc-ccc-cccc
Confidence 76433221 112345777889999998754 45666777775433221100 00000000 000010 011 1212
Q ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC------ceEEEEEEcCCcchhhhhhhhcccc
Q 046506 166 FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH------FAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
++.-.+.+++.....+.++++.++..++++++.+.|++++++.+...+. .....|.+....
T Consensus 231 ~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------- 297 (384)
T d1b9ha_ 231 MRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT------------- 297 (384)
T ss_dssp CBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC-------------
T ss_pred cccccchhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccc-------------
Confidence 2222223333333345678888888999999999999998886653221 223445544321
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----------C-------------------CEeEEEEEccCCCCC-HHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVL----------G-------------------GIYAIRFAAGATLTE-ERH 289 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----------~-------------------~~~~iRis~~~~~~t-~ed 289 (310)
...-..+.+.|.++|+-....... . ....+.+-+ ++..| ++|
T Consensus 298 -------~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~-~~~Lt~e~e 369 (384)
T d1b9ha_ 298 -------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH-RVLLAGEPE 369 (384)
T ss_dssp -------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG-GGGGSCHHH
T ss_pred -------cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccC-CCCCCCHHH
Confidence 111235777888887532221100 0 024577763 44555 789
Q ss_pred HHHHHHHHHHHHHH
Q 046506 290 VMVAWTVVQEHLEA 303 (310)
Q Consensus 290 i~~li~~l~~~~~~ 303 (310)
|++++++|++.+.+
T Consensus 370 i~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 370 LHATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=6.9e-13 Score=121.49 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=151.0
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCccccc-CChHHHHHHHHHhCcEEEeecccccccccCh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-DTLKPLCDVAKQFGIWVHVDAAYAGSACICP 91 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~-~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~ 91 (310)
++.++.++. +..+.+.++.++... ...++++.+++ .|.+ .+++++++++|+.|..+++|++.........
T Consensus 179 ~~~~~~~~~--~~~~~~~~~~~~~~~------~a~v~v~~p~~-~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~ 249 (471)
T d1wyub1 179 VREIPSGPE--GEVDLEALKRELGPH------VAALMLTNPNT-LGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA 249 (471)
T ss_dssp EEEECBCTT--SSBCHHHHHHHCSTT------EEEEEECSSCT-TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC
T ss_pred eeccccccc--ccccchhhhhhhhcc------ccceeeccCCC-cccccchhhhhHHHHHhccccccccccchhhhhhcc
Confidence 666666653 488999888876554 33555555555 4555 4699999999999999999987643332221
Q ss_pred hhhhhhcCCCCCCeeeeeccccccccc-----ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCC-
Q 046506 92 EFRHFIDGVEGADSFSLNAHKWFFTTL-----DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR- 165 (310)
Q Consensus 92 ~~~~~~~~~~~~D~~~~~~hK~l~~p~-----g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~- 165 (310)
...+ .++|.++++.|+.|+.|. +.|++-++++ +.+.+ |..+-..+.........++-.+ ||
T Consensus 250 ~p~~-----~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~--~~R~~---PGRiV~~~~~~~~~~~~REqhI---rRe 316 (471)
T d1wyub1 250 RPGD-----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH--LAPYL---PVPLVERGEEGFYLDFDRPKSI---GRV 316 (471)
T ss_dssp CHHH-----HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG--GGGGC---CSCEEEECSSCEEEECCCTTCC---CCS
T ss_pred ccCc-----ccccccccccccccccccccccccccceeehhh--hhccC---CCceecCCCccccccCCCcccc---cch
Confidence 1111 158999999999888763 4455555544 23333 3322222111000000011000 11
Q ss_pred -------cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecC-CCceEEEEEEcCCcchhhhhhhhcc
Q 046506 166 -------FRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFP-RHFAVVCFRVSPSAVMDKLKTKYEN 237 (310)
Q Consensus 166 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (310)
..++.++..+..+|.+|+.+..+++..+|.|++++|++ +|+++..+ +-++-+.+..... +
T Consensus 317 ~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~~~~~-~---------- 384 (471)
T d1wyub1 317 RSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQPPEG-F---------- 384 (471)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEBCSTT-C----------
T ss_pred hhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeecCCCC-C----------
Confidence 12344555677789999999999999999999999976 69987643 3344444433221 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 238 SLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+ ..++.++|.+.|..-.....+ ...+.+-|+++- -+|+||||+|+++|+++.++
T Consensus 385 ----~-------~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE-~~tkedID~lv~aL~~i~~e 439 (471)
T d1wyub1 385 ----R-------ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTE-TEAKETLEAFAEAMGALLKK 439 (471)
T ss_dssp ----C-------HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCT-TSCHHHHHHHHHHHHHHHTS
T ss_pred ----C-------HHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHh
Confidence 0 135677787888543221111 134567789885 58999999999999999864
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.38 E-value=2.4e-12 Score=114.63 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=108.8
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCe
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~ 105 (310)
.++++++++|+++ +.+|.+...+|++..+.||++|+++||++|++++||.+++.+...-+.. .++|+
T Consensus 121 ~~~~~~~~ai~~~------t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~-------~GaDi 187 (380)
T d1ibja_ 121 TKLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE-------LGADI 187 (380)
T ss_dssp TSHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG-------TTCSE
T ss_pred chHHHHHHHhccC------ccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccccc-------cCCCE
Confidence 3568888888665 4589999999999999999999999999999999999997665543321 26999
Q ss_pred eeeeccccccccc--ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 106 FSLNAHKWFFTTL--DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 106 ~~~~~hK~l~~p~--g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
+.-|..|++++-. -.|.+.+++..+..+..... . ..|....+..+|..++ |.+.+
T Consensus 188 VvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~-~--------------------~~G~~l~p~~a~ll~r--gl~Tl 244 (380)
T d1ibja_ 188 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ-N--------------------SEGSGLAPFDCWLCLR--GIKTM 244 (380)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH-H--------------------HTTCBCCHHHHHHHHH--HHTTH
T ss_pred EEecccceeccccCccccccccchhhHHHHHHhhc-c--------------------ccCCcCCHHHHHHHHh--cchhh
Confidence 9999999999742 23455555554332221100 0 0111123455565554 66889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEe
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVV 210 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~ 210 (310)
..++++.+++++.+++.|++.|.++-+
T Consensus 245 ~lRm~~~~~nA~~lA~~L~~hp~V~~V 271 (380)
T d1ibja_ 245 ALRIEKQQENARKIAMYLSSHPRVKKV 271 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEE
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCeeEE
Confidence 999999999999999999999988643
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=8.2e-12 Score=113.30 Aligned_cols=256 Identities=10% Similarity=0.064 Sum_probs=146.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCC---CcEEEEEeccCCcccccCC---hHHHHHHHHHhCcE
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGL---IPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIW 76 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~---~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~ 76 (310)
++..|.. ++.+|.++. .++++.++..+.+...... ...++++...+|++|.+.+ +++|+++|++|+++
T Consensus 145 ~~~~g~~---~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ 218 (420)
T d1vp4a_ 145 FRQYLAN---FVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLF 218 (420)
T ss_dssp HHTTTCE---EEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHhhh---ccccccccc---ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhccccc
Confidence 3455665 899999864 5899999998876544321 1234555667799999765 67899999999999
Q ss_pred EEeecccccccccChhhhhh-hcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 77 VHVDAAYAGSACICPEFRHF-IDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 77 l~vD~a~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
+++|.++.......+..... .......-++..+..|+++...-+|+++. ++..++........+.....
T Consensus 219 ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~--------- 288 (420)
T d1vp4a_ 219 IVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAG-SKEFIRKIVQAKQSADLCSP--------- 288 (420)
T ss_dssp EEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEEC-CHHHHHHHHHHHHHHHSSCC---------
T ss_pred ccccchhhhccccCcccccccccccccceeEEeccccccccccccccccc-cchhhhhhhhhhhhccccCc---------
Confidence 99999986544322211100 00011234566778888775566777654 55444332211100000000
Q ss_pred CCceeccCCCcchHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhh
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNYG-----VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDK 230 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~ 230 (310)
......+...+.... ....+...++...+.+.+.+.+.++||+++..+.....+++.++...
T Consensus 289 ---------~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~---- 355 (420)
T d1vp4a_ 289 ---------AITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF---- 355 (420)
T ss_dssp ---------HHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC----
T ss_pred ---------hhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCC----
Confidence 011111112222111 12223334444445555666666778998874444445666654321
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 231 LKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ..++.+.+.+.|....++... ...+++|+|++ ..++|+++..++.|++++++..+
T Consensus 356 -----------d-------~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~--~~~~e~l~~a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 356 -----------D-------TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC--LPPDEKIVEGIKRLREVVLEYGK 415 (420)
T ss_dssp -----------C-------TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------C-------HHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC--cCCHHHHHHHHHHHHHHHHHhhH
Confidence 0 023455666777555443322 12568999965 36788999999999999988754
Q ss_pred c
Q 046506 307 A 307 (310)
Q Consensus 307 ~ 307 (310)
+
T Consensus 416 ~ 416 (420)
T d1vp4a_ 416 E 416 (420)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.35 E-value=4.2e-12 Score=114.52 Aligned_cols=254 Identities=11% Similarity=0.061 Sum_probs=142.6
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHc-CCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA-GLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~-~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
..+|.. ++.||.++.+ .+...+.......... .....+++...++|++|.+.+ +++|+++|++||+++++
T Consensus 136 ~~~g~~---~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~ 209 (403)
T d1wsta1 136 KYYDPE---FISIPLDDKG---MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVE 209 (403)
T ss_dssp HTTCCE---EEEEEEETTE---ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhcccc---ceeEeecccC---CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceecc
Confidence 345665 8889988643 4444444444332222 122446677778899998766 56788899999999999
Q ss_pred ecccccccccChhhhhhh-cCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCc
Q 046506 80 DAAYAGSACICPEFRHFI-DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW 158 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 158 (310)
|.++.............. ..-..--.++.|.+|+++....+|+++. ++..+..............
T Consensus 210 De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~-~~~~i~~~~~~~~~~~~~~------------- 275 (403)
T d1wsta1 210 DGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAA-HPHLIRKMEIAKQSIDLCT------------- 275 (403)
T ss_dssp ECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEE-CHHHHHHHHHHHHHHHSSC-------------
T ss_pred ccchhheecCCCCCCcccccCCCCcEEEEccccceecCccccccccc-chHHHHHHHHHHhhhcccc-------------
Confidence 999965443322111110 0011244677899999875567777765 4444332211000000000
Q ss_pred eeccCCCcchHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHcCC--CCeEEecCCCceEEEEEEcCCcchhhhhhhh
Q 046506 159 QITLSRRFRSLKLWFVLRNY-GVANLRHFLRSHVNMAKLFERLVGSD--KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKY 235 (310)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~l~~~L~~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (310)
+ ........+.+... ....+.+..+......+.+.+.|.+. .++....+.....+.+.++...
T Consensus 276 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~--------- 341 (403)
T d1wsta1 276 ----N-TFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGI--------- 341 (403)
T ss_dssp ----C-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTC---------
T ss_pred ----c-cchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCC---------
Confidence 0 00111111111111 12345666666667777777777653 3666654444445555555321
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 046506 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306 (310)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~~~ 306 (310)
+ ...+.+.+.++|.....+... .+.+++|++++ ..++++++..++.|++.+++-.|
T Consensus 342 ------~-------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~--~~~~~~l~~al~rl~~~l~~~~k 401 (403)
T d1wsta1 342 ------D-------TKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFT--YVPEETIREGVRRLAETIKEEMK 401 (403)
T ss_dssp ------C-------TTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------C-------HHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEec--CCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 024566677777544433222 23579999965 36899999999999999876544
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.34 E-value=7.7e-12 Score=111.79 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=107.6
Q ss_pred cEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce-EEE
Q 046506 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC-CCL 123 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-g~l 123 (310)
+.+|.+...+|++..+.||++|+++||++|++++||.+++.+...-+. . .++|++.-|..|++++.... |..
T Consensus 154 t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl------~-~GaDiVihS~TKy~~Ghsdv~~G~ 226 (398)
T d1qgna_ 154 VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKAL------A-LGADLVLHSATKFLGGHNDVLAGC 226 (398)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTT------T-TTCSEEEECTTTTTTCSSSCCCEE
T ss_pred ceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCch------h-hCCCEEEEechhhcCcccceeehh
Confidence 458889999999999999999999999999999999999766543331 1 25999999999999985332 334
Q ss_pred EEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC
Q 046506 124 WVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS 203 (310)
Q Consensus 124 ~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~ 203 (310)
++.++..+...... .. ..|-...+..+|..++ |.+.+..++++.+++|..+.+.|++
T Consensus 227 v~~~~~~~~~~~~~----~~-----------------~~G~~l~p~~a~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~ 283 (398)
T d1qgna_ 227 ISGPLKLVSEIRNL----HH-----------------ILGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEA 283 (398)
T ss_dssp EEECHHHHHHHHHH----HH-----------------HHCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcchhhhhhhhhhh----cc-----------------cCCCcCCHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555444332110 00 0111124455666554 5688999999999999999999999
Q ss_pred CCCeEEecCC-----------------CceEEEEEEcCC
Q 046506 204 DKRFEVVFPR-----------------HFAVVCFRVSPS 225 (310)
Q Consensus 204 ~~~~~v~~~~-----------------~~~~v~~~~~~~ 225 (310)
.|.++-+.-| ..+.++|.+.+.
T Consensus 284 hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~ 322 (398)
T d1qgna_ 284 HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD 322 (398)
T ss_dssp CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC
T ss_pred CCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCC
Confidence 9999743221 256788887653
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.31 E-value=5.6e-12 Score=113.51 Aligned_cols=245 Identities=9% Similarity=0.020 Sum_probs=140.1
Q ss_pred EEEEecCC-CCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccc
Q 046506 13 FRAIKTTK-SSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSAC 88 (310)
Q Consensus 13 v~~v~~~~-~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~ 88 (310)
.+.++.+. ++.+.+|.+.++.++... .+.++++...+|++|.+.+ +++|+++|++|++++++|.++.....
T Consensus 137 ~v~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~ 211 (394)
T d1c7na_ 137 IIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM 211 (394)
T ss_dssp EEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBC
T ss_pred ccccccccccccccchhhhhhhhhccc-----cceEEEecccccccceeccHHHhhhhhccccccceeEecccccccccc
Confidence 55555432 345678999888877432 1458888899999999877 66789999999999999999865443
Q ss_pred cChhhhhhhc---CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 89 ICPEFRHFID---GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 89 ~~~~~~~~~~---~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
....+..... .....-++..|..|.++.| ..+|++++.++.. .+.+........... .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i-~~~~~~~~~~~~~~~-----------------~ 273 (394)
T d1c7na_ 212 PGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDI-RERFTKSRDATSGMP-----------------F 273 (394)
T ss_dssp TTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHH-HHHHHHHHHHTTCCC-----------------C
T ss_pred CCccccchhhhhcccccceeecccccccccccccccccccccChhh-hhhhhhhhhhccccc-----------------c
Confidence 2221111000 0011335567889998754 5567777666543 232211101100000 0
Q ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhH
Q 046506 165 RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGS-DKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEE 243 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (310)
......+.........+..++..+...+..+.+.+.++. .+++.+..+..+..+.+.++.... +
T Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~~--------------~- 338 (394)
T d1c7na_ 274 TTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKM--------------D- 338 (394)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCC--------------C-
T ss_pred ccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCCC--------------C-
Confidence 001111111222233456666666666666777777653 457665433334445555543110 1
Q ss_pred HHHHHHHHHHHHHHHhc-CcEEEEEeEE--CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 244 ERINEFNRELLESINAS-GKAYMTHAVL--GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 244 ~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.+.|.++ |.+..++..+ .+.+++|+|+. +++|+++..++.|++.++++
T Consensus 339 ------~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 339 ------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA---APSSVIQESLERLNKALKDL 393 (394)
T ss_dssp ------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe---CCHHHHHHHHHHHHHHHHhc
Confidence 13566666655 5544443322 23568999954 56889999999999888776
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=4.1e-11 Score=106.17 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=138.3
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHH--HHHhCcEEEee
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDV--AKQFGIWVHVD 80 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l--~~~~g~~l~vD 80 (310)
++..|.. ++.++.++ ++.+|+++++.++.+ +.++++...+|++|.+.+-+++..+ +.+++.++++|
T Consensus 115 ~~~~g~~---v~~~~~~~--~~~~d~~~l~~~~~~-------~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iid 182 (354)
T d1fg7a_ 115 AETIGVE---CRTVPTLD--NWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVAD 182 (354)
T ss_dssp HHHHTCE---EEECCCCT--TSCCCHHHHHTSCTT-------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEE
T ss_pred hhccCce---eecccccc--ccccchhhhhhcccc-------cceeeccCCCccceeEeeeccccccccccccccccccc
Confidence 4456666 88888875 478999999887632 4588888899999998775543333 22367888888
Q ss_pred cccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCce
Q 046506 81 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQ 159 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 159 (310)
.++.-+.... .... ......--++..|++|.++.| .-+|+++ .+++.+.........+..
T Consensus 183 d~~~~f~~~~-~~~~-~~~~~~~~iv~~S~SK~~~laGlRiGy~i-~~~~~i~~l~~~~~~~~~---------------- 243 (354)
T d1fg7a_ 183 EAYIEFCPQA-SLAG-WLAEYPHLAILRTLSKAFALAGLRCGFTL-ANEEVINLLMKVIAPYPL---------------- 243 (354)
T ss_dssp CTTGGGSGGG-CSGG-GTTTCTTEEEEEESSSTTCCGGGCCEEEE-ECHHHHHHHHHHSCSSCS----------------
T ss_pred ccchhhcccc-ccch-hhcccccceEEeCCccccCCCcccccccc-ccchhhhhhhhhcCccch----------------
Confidence 8875332111 1111 111112234567999999855 5577765 455554333211111110
Q ss_pred eccCCCcchHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhc
Q 046506 160 ITLSRRFRSLKLWFVLRNYGV---ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYE 236 (310)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (310)
.......+...+.. .......++..+..+++.+.+.+++++..+.++.++.+.+.+...
T Consensus 244 -------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~~----------- 305 (354)
T d1fg7a_ 244 -------STPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKAS----------- 305 (354)
T ss_dssp -------CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETTH-----------
T ss_pred -------hhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCCH-----------
Confidence 11111122222322 234455566677778888999988887665566777777766531
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 237 NSLLSEEERINEFNRELLESINASGKAYMTHAVL-GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.++.+.|.++|.+...+... ...+++|+|+. ++||.++++++|+.
T Consensus 306 --------------~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig----t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 306 --------------SAVFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALRA 351 (354)
T ss_dssp --------------HHHHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC----CHHHHHHHHHHHhh
Confidence 35677787887654443322 22579999953 57899999999873
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.28 E-value=6.1e-11 Score=105.96 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=116.2
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHH-HhCcEEEeecccccccccCh
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAK-QFGIWVHVDAAYAGSACICP 91 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~-~~g~~l~vD~a~~~~~~~~~ 91 (310)
+.+++.. |+++++++|++++ .+|.+...+|++..+.|+++++++++ ++|+.++||.+++.+...-|
T Consensus 126 ~~~~d~~-------d~~~~~~~i~~~t------~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~P 192 (394)
T d1e5ea_ 126 VDFINTA-------IPGEVKKHMKPNT------KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNP 192 (394)
T ss_dssp EEEECTT-------STTHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCG
T ss_pred eeccCCC-------CHHHHHHhhcccc------cEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCc
Confidence 6666553 3467888887764 48999999999999999999998666 57899999999976665443
Q ss_pred hhhhhhcCCCCCCeeeeeccccccccc--ceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchH
Q 046506 92 EFRHFIDGVEGADSFSLNAHKWFFTTL--DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSL 169 (310)
Q Consensus 92 ~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (310)
.. .++|+++-|..|++++-. -.|++..+++ ......... + .. ..|......
T Consensus 193 l~-------~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~-~~~~~~~~~--~-~~----------------~~G~~lsp~ 245 (394)
T d1e5ea_ 193 VD-------FGVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVG--I-KD----------------ITGSVISPH 245 (394)
T ss_dssp GG-------GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTC--C-CC----------------CCCCCCCHH
T ss_pred hh-------cCCCEEEechhhhcCCCcccccccccchhh-HHHHHHHHH--H-HH----------------hhCCCCChH
Confidence 21 159999999999998742 2345555433 322211110 0 00 011112345
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEec-C-----C-----------CceEEEEEEcC
Q 046506 170 KLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-P-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~-----~-----------~~~~v~~~~~~ 224 (310)
.+|..++ |...+..++++.+++|..+.+.|++.|.++-+. | | ..++++|.+..
T Consensus 246 ~a~ll~r--gl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~ 315 (394)
T d1e5ea_ 246 DAWLITR--GLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS 315 (394)
T ss_dssp HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred HHHHHHh--hchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC
Confidence 5555544 668899999999999999999999999996432 2 1 25678887665
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.27 E-value=8.7e-12 Score=111.34 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=151.2
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
..|.. .++++++++. .++++++++++++. +..|+++| ..|...++++|.++|+++|++++.|+||+
T Consensus 92 ~~G~~---pv~vDi~~~~--~~~~~~~~~~~~~~------t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa 157 (371)
T d2fnua1 92 ESGYT---PVFAGIKNDG--NIDELALEKLINER------TKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHA 157 (371)
T ss_dssp HTTCE---EEECCBCTTS--SBCGGGSGGGCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTC
T ss_pred ccCcc---cccccccccc--cccchhhhhhccch------hhcccccc---ccccccccccccccccccchhhccchhhc
Confidence 34555 8888888753 57778888887765 33555554 57889999999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.|+....... .....+.++++.+.|.+.+. +.|++++.+++...+..... .+-.... ....+ + ....|-
T Consensus 158 ~Ga~~~~~~~---G~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~-~~g~~~~----~~~~~-~-~~~~G~ 226 (371)
T d2fnua1 158 LGSEYQNKKV---GGFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFR-SHGMLKK----DFFEG-E-VKSIGH 226 (371)
T ss_dssp TTCEETTEET---TSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHT-BTTEEES----SSSCE-E-ESSCCC
T ss_pred cCceeccccC---Cccccccccccccccccccc-cceEEEeechhhhhhccccc-ccccccc----ccccc-c-cccccc
Confidence 8765433221 12345778888899998764 56777777776554432111 0000000 00000 0 001111
Q ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----CceEEEEEEcCCcchhhhhhhhcccc
Q 046506 165 RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----HFAVVCFRVSPSAVMDKLKTKYENSL 239 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (310)
.++...+.+++.......+++..++..++++++.+.|.+++++.+..+. ......+.+....
T Consensus 227 n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 293 (371)
T d2fnua1 227 NFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF------------- 293 (371)
T ss_dssp BCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG-------------
T ss_pred cccccchhhhhhhhhhhhccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccc-------------
Confidence 1222222233333334567888888889999999999999888876432 1222333333211
Q ss_pred chhHHHHHHHHHHHHHHHHhcCcEEEEEeEE-------------CC---------EeEEEEEccCCCCCHHHHHHHHHHH
Q 046506 240 LSEEERINEFNRELLESINASGKAYMTHAVL-------------GG---------IYAIRFAAGATLTEERHVMVAWTVV 297 (310)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------------~~---------~~~iRis~~~~~~t~edi~~li~~l 297 (310)
.....++.+.|.++|+ .+..... .+ ...+.+- .++..|++|++++++.|
T Consensus 294 -------~~~r~~~~~~L~~~gI-~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP-~~~~lt~~di~~I~~~i 364 (371)
T d2fnua1 294 -------FTCKKLILESLHKRGI-LAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLP-CHANLNLESVQNIAHSV 364 (371)
T ss_dssp -------GGGHHHHHHHHHHTTE-ECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHCCC-CcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECc-CCCCCCHHHHHHHHHHH
Confidence 0001356666766663 2221100 01 2456664 56789999999999999
Q ss_pred HHHHHH
Q 046506 298 QEHLEA 303 (310)
Q Consensus 298 ~~~~~~ 303 (310)
.+..+.
T Consensus 365 ~~~~~~ 370 (371)
T d2fnua1 365 LKTFES 370 (371)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 888764
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.26 E-value=4.2e-11 Score=104.77 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=119.4
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHH-HHhCcEEEeecccc
Q 046506 6 VGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVA-KQFGIWVHVDAAYA 84 (310)
Q Consensus 6 ~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~-~~~g~~l~vD~a~~ 84 (310)
+|++ +.+++.. |++.++++++++ +.+|.+...+|++..+.+++++++++ +++|+.++||.+.+
T Consensus 61 ~gi~---~~~~d~~-------d~~~~~~~i~~~------t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~a 124 (331)
T d1pffa_ 61 FGVE---VDFIDMA-------VPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFA 124 (331)
T ss_dssp TTCE---EEEECTT-------STTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTT
T ss_pred cCeE---EEEeccc-------chhhHhhhcccc------cceeeeecccccccccccchhhhhhhhcccCceEEeecccc
Confidence 4565 6666553 457888888775 45899999999999999999999985 67899999999997
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccc--cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceecc
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTT--LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 162 (310)
.+...-+.. .++|++.-|..|++++- .-.|.+..++. ...+..... +... .
T Consensus 125 tp~~~~pl~-------~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~-~~~~~~~~~--~~~~-----------------~ 177 (331)
T d1pffa_ 125 SPILTNPLD-------LGVDIVVHSATKYINGHTDVVAGLVCSRAD-IIAKVKSQG--IKDI-----------------T 177 (331)
T ss_dssp HHHHCCGGG-------GTCSEEEEETTTTTSSSSSCCCEEEEECHH-HHHHHHHTC--CCCC-----------------C
T ss_pred ccccccccc-------cCCCEEEecchhhcCCCCcccccccccccc-chhhhhhhh--hhhc-----------------c
Confidence 666544421 15999999999999873 22344544433 222221110 0000 0
Q ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecC-----C-----------CceEEEEEEcC
Q 046506 163 SRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFP-----R-----------HFAVVCFRVSP 224 (310)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~-----------~~~~v~~~~~~ 224 (310)
|....+..+|..++ |.+.+..++++..+++..+.+.|++.|.++ |.-| | ..++++|.+.+
T Consensus 178 G~~l~p~~a~ll~r--gl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~ 254 (331)
T d1pffa_ 178 GAIISPHDAWLITR--GTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG 254 (331)
T ss_dssp CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc
Confidence 11123455666554 668899999999999999999999999884 4322 1 25678888764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=3e-11 Score=107.77 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=136.6
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
+..+++++.+.+.++.+.++....+. +.+++++.++|++|...+ +++|+++|++|+++++.|.++......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~ 209 (375)
T d1o4sa_ 136 VNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYT 209 (375)
T ss_dssp EEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCS
T ss_pred cccccccccccccchhHHHHHhhccC------ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccc
Confidence 66777777666788888887766554 457888899999999866 667888999999999999988644332
Q ss_pred Chhhhhh-hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcc
Q 046506 90 CPEFRHF-IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 167 (310)
Q Consensus 90 ~~~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (310)
....... ..+...--++..|..|.++.| .-+|++.. ++..+............ ...
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~-~~~~~~~~~~~~~~~~~---------------------~~~ 267 (375)
T d1o4sa_ 210 DEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTS---------------------CIN 267 (375)
T ss_dssp SCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTC---------------------SCC
T ss_pred ccccccccccCCCCCEEEEeechhhccCCccccccccc-cccchhhhhhhhccccc---------------------ccc
Confidence 2111100 111111235678999998754 55666654 44333322211100000 001
Q ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHH
Q 046506 168 SLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERIN 247 (310)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (310)
..........+ ........+...+..+.+.+.|++. |+++..+.....+++.+...+
T Consensus 268 ~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~~~~--------------------- 324 (375)
T d1o4sa_ 268 TVAQYAALKAL-EVDNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRGDD--------------------- 324 (375)
T ss_dssp HHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECSSCH---------------------
T ss_pred ccchhhhhhhc-ccchhhhHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECCCCH---------------------
Confidence 11112222222 2233444555666677788888775 787764333445555554321
Q ss_pred HHHHHHHHHHH-hcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 248 EFNRELLESIN-ASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 248 ~~~~~l~~~l~-~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
.++..++. +.|.+...+......+++|+|+. +++++++..++.|+++++
T Consensus 325 ---~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~---~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 325 ---VKFCERLLEEKKVALVPGSAFLKPGFVRLSFA---TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp ---HHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhCCEEEEEccccCCCCeEEEEEc---CCHHHHHHHHHHHHHHhc
Confidence 23344444 45654544444445678999954 578899999888888753
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.5e-10 Score=102.81 Aligned_cols=220 Identities=9% Similarity=-0.015 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|++++++.+... ....|++.-.....|.+.| +++|.++|++||++|++|.++.++......+.-...++ .
T Consensus 176 d~~~l~~~l~~~-----~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv-~ 249 (404)
T d2byla1 176 DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-R 249 (404)
T ss_dssp CHHHHHHHHTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred CHHHHHHhcCCC-----CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCC-C
Confidence 578899988542 1345666555566677766 99999999999999999999976544443222112334 2
Q ss_pred CCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 103 ADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
.|++++ .|.+++. ...|.+.+++. .. +.+ .+....++ .++.+..+.+..++|+.+..
T Consensus 250 PDi~~~--gK~l~gG~~p~~av~~~~~-i~-~~~--~~~~~~~T---------------~~gnpl~~aaa~a~L~~i~~- 307 (404)
T d2byla1 250 PDIVLL--GKALSGGLYPVSAVLCDDD-IM-LTI--KPGEHFST---------------YGGNPLGCRVAIAALEVLEE- 307 (404)
T ss_dssp CSEEEE--CGGGGTTSSCCEEEEECHH-HH-TTS--CTTSSCCS---------------STTCHHHHHHHHHHHHHHHH-
T ss_pred CCEEEE--CchhhCCCccceeeeechh-hh-hcc--CCCCCCcC---------------CCcCHHHHHHHHHHHHHHHh-
Confidence 688855 5877764 34666766544 22 222 11111111 11112233444455555533
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSDKR--FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINA 259 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~~~--~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (310)
++..++..++.+++.+.|.++.. +.-+.. ...+..+.+.... ......+..++.+
T Consensus 308 --~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg-~Gl~~~i~~~~~~--------------------~~~~~~~~~~l~~ 364 (404)
T d2byla1 308 --ENLAENADKLGIILRNELMKLPSDVVTAVRG-KGLLNAIVIKETK--------------------DWDAWKVCLRLRD 364 (404)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEE-ETTEEEEEECCCS--------------------SCCHHHHHHHHHH
T ss_pred --cCchhhhhHhhHHHHHHHHhhccccceeeee-cccEEEEEEecCC--------------------chhHHHHHHHHHh
Confidence 44566667788888888877522 111111 1224445554321 0112356677888
Q ss_pred cCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 260 SGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 260 ~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
+|.+.. +. +..+||++++ ...|++|||.++++|++.+.
T Consensus 365 ~Gvl~~-~~---~~~~i~l~Pp-L~it~~~id~~~~~l~~al~ 402 (404)
T d2byla1 365 NGLLAK-PT---HGDIIRFAPP-LVIKEDELRESIEIINKTIL 402 (404)
T ss_dssp TTEECE-EE---ETTEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEe-cC---CCCEEEEECC-cCCCHHHHHHHHHHHHHHHH
Confidence 885433 22 2357999955 56899999999999998765
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=6.5e-11 Score=105.71 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHh--CcEEEeecccccccccChhhhhhhcCCCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQF--GIWVHVDAAYAGSACICPEFRHFIDGVEGAD 104 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~--g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D 104 (310)
|.++++++++++ +.+|.+...+|++..+.||++|+++|+++ |+.++||.+++.+...-+.. .++|
T Consensus 132 d~~~~~~~i~~~------t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~-------~GaD 198 (391)
T d1cl1a_ 132 IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALD-------FGID 198 (391)
T ss_dssp CGGGGGGTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGG-------GTCS
T ss_pred cccccccccccc------cceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcccc-------cccc
Confidence 457788888765 35899999999999999999999999875 99999999997665543321 1599
Q ss_pred eeeeecccccccccc-eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHH
Q 046506 105 SFSLNAHKWFFTTLD-CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL 183 (310)
Q Consensus 105 ~~~~~~hK~l~~p~g-~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (310)
++.-|..|++++-.. .|.+++.++....+..... +. .|....+..+|..++ |.+.+
T Consensus 199 ivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~--~~-------------------~G~~~~p~~a~ll~r--gl~TL 255 (391)
T d1cl1a_ 199 VSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YL-------------------MGQMVDADTAYITSR--GLRTL 255 (391)
T ss_dssp EEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HH-------------------TTCCCCHHHHHHHHH--HHTTH
T ss_pred eEEeecchhccccccccccceeccccccccchhhh--hc-------------------ccccCCchhhhhhhc--cchhH
Confidence 999999999998432 2333444454332221110 00 011123445555544 66788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEecCC-----------------CceEEEEEEcCC
Q 046506 184 RHFLRSHVNMAKLFERLVGSDKRFEVVFPR-----------------HFAVVCFRVSPS 225 (310)
Q Consensus 184 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~~~~~~~ 225 (310)
..++++..+++..+.+.|++.|.+.-+.-| ..+.++|.+...
T Consensus 256 ~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~ 314 (391)
T d1cl1a_ 256 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK 314 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCC
Confidence 999999999999999999999999755322 145788888763
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.21 E-value=7.5e-10 Score=99.69 Aligned_cols=223 Identities=9% Similarity=-0.002 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
.+.++..+.+. ....|++.-...+.|.+.| +++|.++|++||+++++|.++.++........--..++ ..
T Consensus 175 ~~~l~~~~~~~-----~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv-~P 248 (404)
T d1z7da1 175 LEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KP 248 (404)
T ss_dssp HHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CC
T ss_pred HHHHHHHhcCC-----CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCC-CC
Confidence 45555555322 2446666666667788777 99999999999999999999975543332221112234 37
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
|++++ .|.+++. ...|.+.++++ .. +.+ .+..... + ..+.+..+++..++++.+..+.
T Consensus 249 Divt~--gK~l~gG~~p~~~v~~~~~-i~-~~~--~~~~~~~--------------T-~~gnpl~~aaa~a~L~~~~~~~ 307 (404)
T d1z7da1 249 DVILL--GKALSGGHYPISAVLANDD-IM-LVI--KPGEHGS--------------T-YGGNPLAASICVEALNVLINEK 307 (404)
T ss_dssp SEEEE--CGGGGTTSSCCEEEEECHH-HH-TTC--CTTCCCC--------------T-TTTCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEE--cccccCCCCCcccccchHH-HH-ccC--CCCCcCc--------------C-CCCCcchhhhhhhhhhhhhcch
Confidence 98865 5877653 34566666544 22 221 1111111 1 1112233444455565554433
Q ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcC
Q 046506 183 -LRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG 261 (310)
Q Consensus 183 -~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 261 (310)
++...+....+.+.+.+.+++.+.+.-+.. ...+..+.+..... .+.++...+.++|
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~Gl~~~i~~~~~~~---------------------~~~~~~~~l~~~G 365 (404)
T d1z7da1 308 LCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLLCAIEFKNELV---------------------NVLDICLKLKENG 365 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECTTTC---------------------CHHHHHHHHHHTT
T ss_pred hhhhhccchhHHHHHHHHHHhcCCCeEEEEe-eCcEEEEEEcCCcc---------------------cHHHHHHHHHhCC
Confidence 333334445555666666666654432211 22345566654311 0134667777888
Q ss_pred cEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 262 KAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 262 ~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
. ++.+. +...|||+++ ...|++|+|.++++|++.++.+
T Consensus 366 l-~~~~~---~~~~ir~~Pp-l~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 366 L-ITRDV---HDKTIRLTPP-LCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp E-ECCEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred e-EEecC---CCCEEEEECC-cCCCHHHHHHHHHHHHHHHHhh
Confidence 5 43332 3457999844 6689999999999999988765
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.4e-10 Score=103.43 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHH----HhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAK----QFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~----~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
.++++++++++ +.+|.+..++|++..+.||++|+++|| ++|++++||.+++.+...-+.. .++
T Consensus 128 ~~~~~~~i~~~------t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~-------~GA 194 (393)
T d1n8pa_ 128 LNDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLN-------FGA 194 (393)
T ss_dssp HHHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGG-------GTC
T ss_pred hHHHHHHhhhh------cceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCchh-------hCC
Confidence 46788888765 458999999999999999999999999 6789999999997666543321 159
Q ss_pred Ceeeeecccccccccc--eEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 104 DSFSLNAHKWFFTTLD--CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 104 D~~~~~~hK~l~~p~g--~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
|++.-|..|++++-.. .|++..++.....+..... . ..|-......+|..++ |..
T Consensus 195 DiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~-~--------------------~~G~~~~p~~a~ll~r--gl~ 251 (393)
T d1n8pa_ 195 DIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-N--------------------AIGAIPSPFDAWLTHR--GLK 251 (393)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-H--------------------HHCCCCCHHHHHHHHH--HHT
T ss_pred CEEEEccccccCCCCccccceeeecchhHHHHHHHHH-h--------------------hcCCCCChHHHHHHHh--CCc
Confidence 9999999999987422 3444445443332221100 0 0111123445565554 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCeEEecCC-------------------CceEEEEEEcCC
Q 046506 182 NLRHFLRSHVNMAKLFERLVGSD-KRFEVVFPR-------------------HFAVVCFRVSPS 225 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~~-~~~~v~~~~-------------------~~~~v~~~~~~~ 225 (310)
.+..++++..++++.+.+.|+.. |.++-+.-| ..++++|.+.+.
T Consensus 252 Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~ 315 (393)
T d1n8pa_ 252 TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG 315 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC
T ss_pred chhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCC
Confidence 88999999999999999999764 667654321 145889988763
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.6e-10 Score=103.74 Aligned_cols=182 Identities=17% Similarity=0.202 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeeccccc-ccccChhhhhhhcCCCCCCee
Q 046506 28 PDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG-SACICPEFRHFIDGVEGADSF 106 (310)
Q Consensus 28 ~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~-~~~~~~~~~~~~~~~~~~D~~ 106 (310)
.+..+..++++ +.+|.+.+++|++..+.||++|+++||++|++++||.+.+. +.+.-|. . .++|++
T Consensus 134 ~~~~~~~~~~~------t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl-~------~GaDiV 200 (421)
T d2ctza1 134 PEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL-A------WGAALV 200 (421)
T ss_dssp HHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG-G------GTCSEE
T ss_pred cchhccccCCC------ceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecccc-c------cCCcEE
Confidence 35555666555 45899999999999999999999999999999999999974 3332221 1 269999
Q ss_pred eeecccccccc--cceEEEEEeCchhHHhh---h--ccCCccccccccccccccCCC-----CceeccCCCcchHHHHHH
Q 046506 107 SLNAHKWFFTT--LDCCCLWVKDPSDLVNS---L--STNPEYLKNKATESKQVVDYK-----DWQITLSRRFRSLKLWFV 174 (310)
Q Consensus 107 ~~~~hK~l~~p--~g~g~l~v~~~~~~~~~---~--~~~~~y~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 174 (310)
.-|..|++++- .-.|++..++....... + ...+.|......+..+...+. ...-..|-...+..+|..
T Consensus 201 vhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~ 280 (421)
T d2ctza1 201 THSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVV 280 (421)
T ss_dssp EEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHH
T ss_pred EEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999873 22344544443211100 0 000111000000000000000 000001222334556655
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeE-EecC-----C------------CceEEEEEEcC
Q 046506 175 LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFE-VVFP-----R------------HFAVVCFRVSP 224 (310)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~-----~------------~~~~v~~~~~~ 224 (310)
++ |...+.-++++.++++..+.+.|++.|.++ |.-| | ..++++|.+.+
T Consensus 281 ~r--gl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~ 346 (421)
T d2ctza1 281 LL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp HH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred hc--CCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 54 667889999999999999999999999995 4322 1 14478888865
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=9.2e-11 Score=105.04 Aligned_cols=241 Identities=12% Similarity=0.032 Sum_probs=141.4
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeec
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~ 81 (310)
..|.. ++.++.++++ +..+.+.+...+.+. +.++++..++|++|...+ +++|+++|++||++++.|.
T Consensus 130 ~~g~~---~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De 199 (389)
T d2gb3a1 130 IAGVK---LIPVTRRMEE-GFAIPQNLESFINER------TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDE 199 (389)
T ss_dssp HHTCE---EEEEECCGGG-TSCCCTTGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCcc---cccccccccc-ccchhhhhhhhcccC------ccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEec
Confidence 34554 7778877653 445555555554443 457888889999999766 7889999999999999999
Q ss_pred ccccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCcee
Q 046506 82 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQI 160 (310)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 160 (310)
+++........... ......-..+..+..|.++.| .-+|+++..++... ...........
T Consensus 200 ~y~~~~~~~~~~~~-~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~-~~~~~~~~~~~----------------- 260 (389)
T d2gb3a1 200 VYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLITRNEELI-SHAMKLAQGRL----------------- 260 (389)
T ss_dssp TTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHH-HHHHHHHHHSC-----------------
T ss_pred cccccccccccccc-cccccccccccccccccccCcccceeeeeccchhHH-HHHhhhhhccc-----------------
Confidence 98655433221111 111112345667888988876 44677766555332 22211000000
Q ss_pred ccCCCcchHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccc
Q 046506 161 TLSRRFRSLKLWFVLRNY--GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
....+...++...+ ....++...++..++.+.+.+.|++++......+..+..+.+.++..+
T Consensus 261 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~~------------ 324 (389)
T d2gb3a1 261 ----APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVED------------ 324 (389)
T ss_dssp ----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSSC------------
T ss_pred ----cccccccccccccccccchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCCC------------
Confidence 00111122222222 345678888888899999999999885444443344555666654432
Q ss_pred cchhHHHHHHHHHHHHHHHHhcC-----cEEEEEeE--E----CCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASG-----KAYMTHAV--L----GGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g-----~~~~~~~~--~----~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
..++.++|.++. .+.+.|.. . .+.+++|+|+. .++++++..++.|++.++++
T Consensus 325 -----------~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~---~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 325 -----------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp -----------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc---CCHHHHHHHHHHHHHHHHHh
Confidence 124455554432 12222221 1 13579999954 57888888888888877664
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=8.5e-10 Score=98.73 Aligned_cols=215 Identities=11% Similarity=0.041 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 102 (310)
|+++|++.+.++ ...|++.-.....|.+.| +++|.++|++||+++++|.++.++............++ .
T Consensus 166 d~~~l~~~~~~~------iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v-~ 238 (387)
T d1vefa1 166 DVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI-V 238 (387)
T ss_dssp CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-C
T ss_pred CHHHHHHhcCCC------eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCc-C
Confidence 578888888643 445666555556677766 99999999999999999999976643332211111233 3
Q ss_pred CCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHH
Q 046506 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVAN 182 (310)
Q Consensus 103 ~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (310)
.|+++++ |.+++.+..+.+..+++. . +.+ .+.+...+ + .+-+..+.+..++++.+.
T Consensus 239 PDi~~~g--K~l~gG~~~~~~~~~~~~-~-~~~--~~~~~g~T--------------~-~gnPla~aaa~a~L~~l~--- 294 (387)
T d1vefa1 239 PDILTLA--KALGGGVPLGVAVMREEV-A-RSM--PKGGHGTT--------------F-GGNPLAMAAGVAAIRYLE--- 294 (387)
T ss_dssp CSEEEEC--GGGGTTSSCEEEEEEHHH-H-HTS--CTTSSCCS--------------S-TTCHHHHHHHHHHHHHHH---
T ss_pred Cceeeec--ccCCCCccccccccceee-e-ecc--ccCCcccc--------------C-CCCcchhhhcccchhhcc---
Confidence 7888875 777665555666655442 2 221 11111111 1 111122333344444442
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 046506 183 LRHFLRSHVNMAKLFERLVGSD--KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINAS 260 (310)
Q Consensus 183 ~~~~~~~~~~~a~~l~~~L~~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 260 (310)
-.+..++..++.+++.+.|+++ +.+.-+.. ...+..+.+.... ...+.+.+.++
T Consensus 295 ~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg-~Gl~~~ie~~~~~-----------------------~~~~~~~~~~~ 350 (387)
T d1vefa1 295 RTRLWERAAELGPWFMEKLRAIPSPKIREVRG-MGLMVGLELKEKA-----------------------APYIARLEKEH 350 (387)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEE-ETTEEEEEESSCS-----------------------HHHHHHHHHHH
T ss_pred cccccchHhhhhHHHHHHHHhcCCCceEEEee-cceEEEEEEeCCc-----------------------hHHHHHHHHHC
Confidence 2455677778888899999865 22221111 1234455554421 12344445556
Q ss_pred CcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 261 GKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 261 g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
|.+... .+...+|++++ ...|++|||.+++++++.+
T Consensus 351 g~l~~~----~g~~~ir~~Pp-l~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 351 RVLALQ----AGPTVIRFLPP-LVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp CEECEE----SSTTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEe----cCCCEEEEECC-ccCCHHHHHHHHHHHHHHh
Confidence 654332 24568999954 6789999999999998865
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.4e-09 Score=95.22 Aligned_cols=218 Identities=10% Similarity=0.079 Sum_probs=123.8
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...+++.-.....|.+.| +++|.++|++||++|++|..+.+.........-...++ ..|++++ .|.+++.+..
T Consensus 199 vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv-~PDi~~~--gK~l~gG~P~ 275 (425)
T d1sffa_ 199 IAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLTTF--AKSIAGGFPL 275 (425)
T ss_dssp EEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEEEE--CGGGGTSSCC
T ss_pred eEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCC-Cccceec--ccccCCCcce
Confidence 445666555555676554 88999999999999999999976543332221112233 3788876 5888776668
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERL 200 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~ 200 (310)
|++.++++ .. +.+. +..... ++ .+.+..+.+..++|+.+.++ ...++...+.+++.+.
T Consensus 276 ~av~~~~~-i~-~~~~--~~~~~~--------------T~-~gnpl~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~ 333 (425)
T d1sffa_ 276 AGVTGRAE-VM-DAVA--PGGLGG--------------TY-AGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDG 333 (425)
T ss_dssp EEEEEEHH-HH-TTSC--TTSBCC--------------SS-SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred EEEEEcHH-HH-HhhC--CCCCCC--------------CC-CcCHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhh
Confidence 88887765 22 2221 111100 11 11122334444555555333 3344444555555554
Q ss_pred H----cCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 201 V----GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 201 L----~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
| ++.|.+.-+.. ...+..+.+...... ... + ..+...+.+.+.++|.+..... ....+|
T Consensus 334 l~~~~~~~~~v~~vrg-~Gl~~~i~f~~~~~~-----------~~~--~-~~~~~~~~~~l~~~Gvl~~~~g--~~~n~i 396 (425)
T d1sffa_ 334 LLAIAEKHPEIGDVRG-LGAMIAIELFEDGDH-----------NKP--D-AKLTAEIVARARDKGLILLSCG--PYYNVL 396 (425)
T ss_dssp HHHHHHTCTTEEEEEE-ETTEEEEEEBGGGCT-----------TSB--C-HHHHHHHHHHHHHTTEECEEES--TTSCEE
T ss_pred hhhhHhhCCceEEEEc-cccEEEEEEeccCcc-----------CCc--c-HHHHHHHHHHHHHCCCEEeccC--CCCCEE
Confidence 4 44443322211 233455555432100 000 0 3345677888888986443221 134679
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHh
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEALL 305 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~~~ 305 (310)
|++++ ...|++|||.+++++++.++++.
T Consensus 397 ~~~Pp-L~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 397 RILVP-LTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 99954 66899999999999999988874
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=2.4e-09 Score=97.97 Aligned_cols=219 Identities=15% Similarity=0.136 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC-
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE- 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~- 101 (310)
+.+++++.+............|++.-.....|.+.| +++|.++|++||++|++|..+.++...+..+.....++.
T Consensus 231 ~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~ 310 (461)
T d1ohwa_ 231 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD 310 (461)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSS
T ss_pred hHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccccccccccccccc
Confidence 356777877665443334556666666666676654 899999999999999999999766443322211112232
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVA 181 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (310)
..|+++++ |.++ .|++... .. +. ...+..... ++ .+.+..+++..++++.+..
T Consensus 311 ~PDiv~~g--K~l~----~g~~~~~-~~-~~---~~~~~~~~~--------------T~-~g~p~~~aaa~a~l~~i~~- 363 (461)
T d1ohwa_ 311 PADVMTFS--KKMM----TGGFFHK-EE-FR---PNAPYRIFN--------------TW-LGDPSKNLLLAEVINIIKR- 363 (461)
T ss_dssp CCSEEEEC--GGGS----SEEEEEC-GG-GS---CSSTTSSCC--------------SC-SSCHHHHHHHHHHHHHHHH-
T ss_pred Cchhhhhh--hccc----ccccccc-cc-cc---ccccccccc--------------cc-ccccccchhhcccchhhhh-
Confidence 36888664 6654 3444433 21 11 111111111 11 1112233444455555533
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCCe--EEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 182 NLRHFLRSHVNMAKLFERLVGS----DKRF--EVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 182 ~~~~~~~~~~~~a~~l~~~L~~----~~~~--~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
++..++..++.++|.++|.+ .|.+ ++- . ...++.+.+.. .....++.+
T Consensus 364 --~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr-G-~Gl~~~ie~~~----------------------~~~~~~i~~ 417 (461)
T d1ohwa_ 364 --EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-G-RGTFCSFDTPD----------------------ESIRNKLIS 417 (461)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-E-ETTEEEEECSS----------------------HHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEee-e-eeEEEEEEcCC----------------------HHHHHHHHH
Confidence 34555666666677776654 3332 121 1 12345555543 334457788
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.+.++|. ++.+. +..+|||.+. ...|++|+|.++++|.+.+.+
T Consensus 418 ~~~~~Gl-l~~~~---~~~~ir~~Pp-L~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 418 IARNKGV-MLGGC---GDKSIRFRPT-LVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHHTTE-ECEEE---TTTEEECCCC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCe-EEeeC---CCCEEEEeCC-cCCCHHHHHHHHHHHHHHHhc
Confidence 8888885 44332 3468999854 678999999999999988754
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.12 E-value=3e-10 Score=103.12 Aligned_cols=233 Identities=10% Similarity=-0.053 Sum_probs=122.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 26 id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
-|+++||+.|++... ....|++.-.....|.+.| +++|.++|++||++|++|.++.++ ...........++
T Consensus 184 ~~~~~le~~~~~~~~---~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi- 258 (427)
T d2gsaa_ 184 NDLEAVKALFAENPG---EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGV- 258 (427)
T ss_dssp TCHHHHHHHHTTSTT---TEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTC-
T ss_pred chHHHHHHHHHhCCC---CeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCC-
Confidence 578999999976322 2456666666667788888 999999999999999999999764 2222211112233
Q ss_pred CCCeeeeecccccccccceEEEEEeCchhHHhhhccC-CccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCH
Q 046506 102 GADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTN-PEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (310)
..|+++++ |.+++.+..|.+..+++ .. +.+... +.+...+ -++.+..+.+..++++.+.+
T Consensus 259 ~PDi~~~g--K~lggG~p~~a~~~~~~-i~-~~~~~~~~~~~~~T---------------~~gnpla~AAala~Le~i~~ 319 (427)
T d2gsaa_ 259 TPDLTTLG--KIIGGGLPVGAYGGKRE-IM-QLVAPAGPMYQAGT---------------LSGNPLAMTAGIKTLELLRQ 319 (427)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEECHH-HH-TTBTTTSSBCCCCT---------------TTTCHHHHHHHHHHHHHHTS
T ss_pred CHHHHhhh--hccCCCcceeeeeehHH-HH-HHhcccCCCcCCCC---------------CCCCchhhHHHHHhhHHhhh
Confidence 37988875 55555444566655543 33 222111 1111111 11112233444455555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCC-eEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHH
Q 046506 181 ANLRHFLRSHVNMAKLFERLVG----SDKR-FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255 (310)
Q Consensus 181 ~~~~~~~~~~~~~a~~l~~~L~----~~~~-~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (310)
+. ..++..++.++|.+.|. +.+- ..+... ...+.+.+....+... ++ ....+ ..+...+..
T Consensus 320 ~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~--ggm~~i~~~~~~v~~~-~~----~~~~d----~~~~~~~~~ 385 (427)
T d2gsaa_ 320 PG---TYEYLDQITKRLSDGLLAIAQETGHAACGGQV--SGMFGFFFTEGPVHNY-ED----AKKSD----LQKFSRFHR 385 (427)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE--TTEEEEESSSCCCCSH-HH----HTTSC----HHHHHHHHH
T ss_pred hh---HHhhhhHHHHHHHHHHHHHHhhcCCCcEEccc--CCeEEEEEeccCCCCH-HH----hhccc----HHHHHHHHH
Confidence 33 34444455555555553 3321 122211 2233444332111000 00 00001 122245667
Q ss_pred HHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 256 ~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
.|.++|. ++.+.. .. ++. .+...|++|||.+++++++.+++
T Consensus 386 ~ll~~Gv-~l~p~~--~~---~~~-~~l~~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 386 GMLEQGI-YLAPSQ--FE---AGF-TSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHTTE-ECCSST--TS---CEE-CCTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCE-EECCCC--Cc---cee-CCCCCCHHHHHHHHHHHHHHHHh
Confidence 7778874 443321 11 122 23557899999999999988754
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.10 E-value=3.8e-10 Score=102.04 Aligned_cols=256 Identities=11% Similarity=0.009 Sum_probs=142.0
Q ss_pred eecCCCCCCEEEEecCCCC--------CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHH
Q 046506 4 QIVGIDVKNFRAIKTTKSS--------SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQ 72 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~--------~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~ 72 (310)
...|.. ++.|++++++ .+.++++.+++...+. +.++++..++|++|.+.+ +++|+++|++
T Consensus 132 ~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~ 202 (418)
T d2r5ea1 132 KAAGGI---PRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIINTPHNPLGKVMDRAELEVVANLCKK 202 (418)
T ss_dssp HHTTCE---EEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHcCCe---EEEEEecccccccchhhhhhhhhHHHHhhhhhcc------ccceecCCcCccccccccHHHHHHHhhhhhc
Confidence 345555 8888886643 2457778777766543 457888889999999876 6668899999
Q ss_pred hCcEEEeecccccccccChhhhhhh--cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCcccccccccc
Q 046506 73 FGIWVHVDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATES 149 (310)
Q Consensus 73 ~g~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~ 149 (310)
||++++.|.++.............. .....--.+..|..|.++.| .-+|+++. ++..+....... ......
T Consensus 203 ~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~-~~~~i~~~~~~~-~~~~~~---- 276 (418)
T d2r5ea1 203 WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVH-QNCVYT---- 276 (418)
T ss_dssp HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEES-CHHHHHHHHHHH-TTTTCS----
T ss_pred CCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccc-cchhhhhhhhcc-cccccc----
Confidence 9999999999865443221111100 01001124567999998755 56777654 443433221110 000000
Q ss_pred ccccCCCCceeccCCCcchHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEc
Q 046506 150 KQVVDYKDWQITLSRRFRSLKLWFVLRN------YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS 223 (310)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~ 223 (310)
.+. .....+...+.. .....+.++.++.....+.+.+.|.++ |+++..|..+..+...+.
T Consensus 277 ------------~~~-~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~ 342 (418)
T d2r5ea1 277 ------------CAT-PIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWS 342 (418)
T ss_dssp ------------CCH-HHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECG
T ss_pred ------------ccc-chhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcc
Confidence 000 011111111111 123456777788888889999999987 888764444555555554
Q ss_pred CCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEe-EE-------CCEeEEEEEccCCCCCHHHHHHHHH
Q 046506 224 PSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHA-VL-------GGIYAIRFAAGATLTEERHVMVAWT 295 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~-------~~~~~iRis~~~~~~t~edi~~li~ 295 (310)
+... .+...... . .....++.+.|.++..+.+.|. .. .+.+++|+|+. .++|+++..++
T Consensus 343 ~~~~--~~~~~~~~--~------~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~---~~~e~l~~a~~ 409 (418)
T d2r5ea1 343 SLDS--KVDLTQET--D------ARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF---KKDENLQKAAE 409 (418)
T ss_dssp GGST--TCCGGGCC--C------SSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECC---SCHHHHHHHHH
T ss_pred cccc--cccchhcc--c------ccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEec---CCHHHHHHHHH
Confidence 3110 00000000 0 0011355566655433444432 11 12468999964 47889999998
Q ss_pred HHHHHH
Q 046506 296 VVQEHL 301 (310)
Q Consensus 296 ~l~~~~ 301 (310)
.|++++
T Consensus 410 rl~~~l 415 (418)
T d2r5ea1 410 ILRKWK 415 (418)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=4.6e-09 Score=91.89 Aligned_cols=220 Identities=11% Similarity=-0.005 Sum_probs=133.2
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecc
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a 82 (310)
++++|+. ++.||.+++. ..+ + ...+ .+.++++...+|.+|.+.+.++|.++ .++++++++|.+
T Consensus 113 ~~~~g~~---~v~v~~~~~~--~~~-~----~~~~------~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~~ii~Dd~ 175 (334)
T d2f8ja1 113 AKAVGAK---FLEVPLTKDL--RIP-E----VNVG------EGDVVFIPNPNNPTGHVFEREEIERI-LKTGAFVALDEA 175 (334)
T ss_dssp HHHHTCC---EEECCCCTTS--CCC-C----CCCC------TTEEEEEESSCTTTCCCCCHHHHHHH-HTTTCEEEEECT
T ss_pred hhccCCc---cccccccccc--ccc-c----cccc------cceEEEecccccccceeecHHHhhcc-ccceeEEeeccc
Confidence 4567877 9999998753 222 1 1111 24577788899999999998888775 567899999998
Q ss_pred cccccccChhhhhhhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceec
Q 046506 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 161 (310)
+........... ... ..--.++.|..|+++.| .-+|+++. ++..+......... ..
T Consensus 176 ~~~~~~~~~~~~--~~~-~~~~i~~~S~SK~~~~~G~R~G~~~~-~~~~i~~l~~~~~~-~~------------------ 232 (334)
T d2f8ja1 176 YYEFHGESYVDF--LKK-YENLAVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLP-FN------------------ 232 (334)
T ss_dssp TGGGTCCCCGGG--GGT-CSSEEEEEESTTTSSCTTTCEEEEEE-CHHHHHHHHHHSCT-TC------------------
T ss_pred chhhcccccccc--ccc-CceEEEEecCccccchhhhhhhhccc-chHHHHHHHHhhcc-cc------------------
Confidence 744322221111 111 11235678999998866 46677665 45444332211100 00
Q ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccch
Q 046506 162 LSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLS 241 (310)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (310)
.+. .....+.+.+ -..+.+++..++..+..+.+.+.|+++ |+++. +++.+.+.+.+..
T Consensus 233 ~s~-~~~~~a~~~l--~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~~~~----------------- 290 (334)
T d2f8ja1 233 VSY-VSQMFAKVAL--DHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEK----------------- 290 (334)
T ss_dssp SCH-HHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCSSEEEEECCH-----------------
T ss_pred cch-hhhhhccccc--ccccchhhHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCC-----------------
Confidence 000 0111112222 134667777888888889999999987 78876 5566655444332
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 242 EEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
.-..++.+.|.++|. .+.+ ..+++|+|+. +.||+++++++|++
T Consensus 291 ------~~~~~~~~~L~~~GI-~vr~----~~~~vRis~g----~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 291 ------EEKERLLEHLRTKNV-AVRS----FREGVRITIG----KREENDMILRELEV 333 (334)
T ss_dssp ------HHHHHHHHHHHHTTE-ECEE----ETTEEEEECC----CHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHCCC-EECC----CCCeEEEEcC----CHHHHHHHHHHHhc
Confidence 112467778878874 3332 1357999953 46788999999875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.9e-10 Score=102.86 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=132.2
Q ss_pred CcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeecccccccccChhhhhhh--
Q 046506 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI-- 97 (310)
Q Consensus 23 ~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~-- 97 (310)
++.+|.+++....++. ..++++..++|++|.+.+ +++|+++|++|+++++.|.++.......+......
T Consensus 156 ~~~~d~~~~~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~ 229 (418)
T d1w7la_ 156 NWQLDPMELAGKFTSR------TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASL 229 (418)
T ss_dssp GEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred Ccccchhhhhcccccc------ccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHc
Confidence 3567777776665543 457888899999999865 77899999999999999999865443222111111
Q ss_pred cCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHH
Q 046506 98 DGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLR 176 (310)
Q Consensus 98 ~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (310)
.+...--++..|..|.++.| .-+|+++. ++..+....... .+.... .+. .....+..++.
T Consensus 230 ~~~~~~~i~~~S~SK~~~~pG~RvG~~v~-~~~~~~~l~~~~-~~~~~~----------------~~~-~~q~~~~~~l~ 290 (418)
T d1w7la_ 230 PGMWERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVH-QNSVFH----------------CPT-QSQAAVAESFE 290 (418)
T ss_dssp TTTGGGEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHH-HTTTSC----------------CCH-HHHHHHHHHHH
T ss_pred cccccccceecccCccccCCCCccccccc-chhhhhhhcccc-cccccc----------------ccc-hhhHHHHHHhh
Confidence 11111235679999988765 66777765 443332221100 000000 000 01111111221
Q ss_pred H---h---CHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHH
Q 046506 177 N---Y---GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFN 250 (310)
Q Consensus 177 ~---~---~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (310)
. . ....+....++..++++.+.+.|.+. |+++..|..+..+.+.++... ++...-....+ ....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~-----~~~~~~~~~~~----~~~~ 360 (418)
T d1w7la_ 291 REQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDISDFK-----RKMPDLPGAVD----EPYD 360 (418)
T ss_dssp HHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECHHHH-----HHCCCCCCCTT----CCHH
T ss_pred hccccccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECcccc-----cccchhccccc----cccH
Confidence 1 1 12455667777888888999999886 888764444445555554210 00000000000 0112
Q ss_pred HHHHHHHHh-cCcEEEEEeEE-------CCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 251 RELLESINA-SGKAYMTHAVL-------GGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 251 ~~l~~~l~~-~g~~~~~~~~~-------~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
.++.+.|.+ .|....++... .+.++||+|+. +++++++.+++.|+++.
T Consensus 361 ~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~---~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 361 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV---KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp HHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEc---CCHHHHHHHHHHHHHHh
Confidence 345555544 45443333221 23579999954 57889999998887764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.05 E-value=8e-10 Score=100.36 Aligned_cols=221 Identities=13% Similarity=0.046 Sum_probs=113.6
Q ss_pred cEEEEEeccCCcccccCC----hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCCCeeeeecccccccccce
Q 046506 45 PLFLCATIGTTAITAVDT----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120 (310)
Q Consensus 45 ~~~v~~~~~~~~~G~~~p----l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 120 (310)
...+++.-.....|.+.| +++|.++|++||++|++|..+.+.............++ ..|+++++ |.+++..-.
T Consensus 202 iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv-~PDi~~~g--K~l~gG~p~ 278 (431)
T d1zoda1 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTLS--KTLGAGLPL 278 (431)
T ss_dssp EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--HHHHTTSSC
T ss_pred ccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCC-Ccchhccc--ccccccccc
Confidence 344555444455566655 99999999999999999999976543332211111233 37988875 666654455
Q ss_pred EEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-
Q 046506 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFER- 199 (310)
Q Consensus 121 g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~- 199 (310)
+.++++++. ...... . .+.... + ..+.+..+.+..+++..+..+ ...++..++.+++.+
T Consensus 279 ~av~~~~~~-~~~~~~-~-~~~~~~-------------T-~~g~pl~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~ 338 (431)
T d1zoda1 279 AAIVTSAAI-EERAHE-L-GYLFYT-------------T-HVSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRG 338 (431)
T ss_dssp EEEEECHHH-HHHHHH-T-TCCCCC-------------T-TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred ceeeeeecc-hhhhhc-c-cccccC-------------C-CCCCcchHHHHHHHHHHhhhh---hhhHHHHHHHHHHhhh
Confidence 666655442 212111 1 110000 0 111122233344445544333 334444444444444
Q ss_pred ---HHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEE
Q 046506 200 ---LVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAI 276 (310)
Q Consensus 200 ---~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~i 276 (310)
.+.+.|-+.=+.. ...++.+.+..... ...+. +.....+.+.+.+.|...-........++|
T Consensus 339 l~~~~~~~~~i~~vrG-~Glm~~ie~~~~~~---------~~~~~-----~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i 403 (431)
T d1zoda1 339 LLDLMERFDCIGDVRG-RGLLLGVEIVKDRR---------TKEPA-----DGLGAKITRECMNLGLSMNIVQLPGMGGVF 403 (431)
T ss_dssp HHHHHHHCTTEEEEEE-ETTEEEEEEEEETT---------TTEEC-----TTHHHHHHHHHHHTTEECCEECCTTSCCEE
T ss_pred hhhhhhcCCCeEEEee-cceEEEEEEecCCc---------ccCcc-----HHHHHHHHHHHHHhCcccCeeeecCCCCEE
Confidence 4444443221111 12234444422100 00000 223356677777777431111111235689
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 277 RFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 277 Ris~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
|++++ ...|++|||.++++|.+.++++
T Consensus 404 ~l~Pp-l~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 404 RIAPP-LTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 99955 6789999999999999988764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=8.5e-10 Score=98.51 Aligned_cols=236 Identities=11% Similarity=0.055 Sum_probs=138.6
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeeccccccccc
Q 046506 13 FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDAAYAGSACI 89 (310)
Q Consensus 13 v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~a~~~~~~~ 89 (310)
+..++.+++ .+.+|++++++.+.++ +.+++++..+|.+|++.+ +++|+++|.+++++++.|..+......
T Consensus 135 ~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~ 207 (382)
T d1u08a_ 135 VKRMALQPP-HFRVDWQEFAALLSER------TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS 207 (382)
T ss_dssp EEEEECCTT-TCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCC
T ss_pred ceecccccc-cccCCHHHHhhhhccC------ccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccc
Confidence 677777765 5789999999887765 457888889999999877 466778888999999999887543322
Q ss_pred Chhhhhhhc--CCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCc
Q 046506 90 CPEFRHFID--GVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRF 166 (310)
Q Consensus 90 ~~~~~~~~~--~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (310)
......... ....--++..+..|.++.| .-+|+++. ++..+...... ....... .-.+
T Consensus 208 ~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~-~~~~~~~~~~~-~~~~~~~-----------------~~~~ 268 (382)
T d1u08a_ 208 QQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKV-HQYLTFS-----------------VNTP 268 (382)
T ss_dssp SSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHH-HHHHTSS-----------------CCHH
T ss_pred ccccccccccccccCcEEEEeeccccccCCcccchhhhc-cchhHHHHHhh-hcccccc-----------------cccc
Confidence 211000000 0001225678889988766 66787764 44343222110 0000000 0001
Q ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHH
Q 046506 167 RSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246 (310)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
....+..++. .+.+.+..+.++..+..+.+.+.+.. .++.+..+.....+.+.++.... .+
T Consensus 269 ~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~p~gg~~~~~~~~~~~~-------------~d---- 329 (382)
T d1u08a_ 269 AQLALADMLR-AEPEHYLALPDFYRQKRDILVNALNE-SRLEILPCEGTYFLLVDYSAVST-------------LD---- 329 (382)
T ss_dssp HHHHHHHHHH-HCTHHHHTHHHHHHHHHHHHHHHTTS-SSCEECCCCBSSEEEEECTTTCC-------------SC----
T ss_pred cccccccccc-cchHHHHHHHHHHHhhhhhhhhhhcc-CCcEEecCCceEEEEEecCCCCC-------------CC----
Confidence 2222333332 24567778888888888888888876 48888643334345555543210 01
Q ss_pred HHHHHHHHHHHHh-cCcEEEEEeEE----CCEeEEEEEccCCCCCHHHHHHHHHHHHH
Q 046506 247 NEFNRELLESINA-SGKAYMTHAVL----GGIYAIRFAAGATLTEERHVMVAWTVVQE 299 (310)
Q Consensus 247 ~~~~~~l~~~l~~-~g~~~~~~~~~----~~~~~iRis~~~~~~t~edi~~li~~l~~ 299 (310)
..++..+|.+ .|....++... .+.+++|+|+. +++|+++..++.|++
T Consensus 330 ---~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~---~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 330 ---DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAERLRQ 381 (382)
T ss_dssp ---HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe---CCHHHHHHHHHHHhC
Confidence 1345555544 45444433222 24578999964 467888888877764
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.02 E-value=2e-10 Score=103.37 Aligned_cols=242 Identities=13% Similarity=0.046 Sum_probs=134.6
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++..|.. ++.+|+.+.+.+..+++.+++.+...+. ++.++++..++|++|.+.+ +++|+++|++|+++++.
T Consensus 140 ~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~ 213 (401)
T d7aata_ 140 FRDAGLQ---LQAYRYYDPKTCSLDFTGAMEDISKIPE---KSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYF 213 (401)
T ss_dssp HHHTTCE---EEEEECEETTTTEECHHHHHHHHTTSCT---TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCe---EEEEeccccccccccHHHHHHHHhcCCC---ceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEE
Confidence 3456776 9999987666678999999988865322 2567888889999999866 77899999999999999
Q ss_pred ecccccccccChhhhhh----hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccC
Q 046506 80 DAAYAGSACICPEFRHF----IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~----~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 154 (310)
|.++....+........ ......--.+..+..|.++.| .-+|++...... ....... ...+.....
T Consensus 214 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~-~~~~~~~-~~~~~~~~~------- 284 (401)
T d7aata_ 214 DMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRD-AEEAKRV-ESQLKILIR------- 284 (401)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSS-HHHHHHH-HHHHHHHHH-------
T ss_pred eccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHH-HHHHHHH-HHHHHHHhh-------
Confidence 99997655432111100 001001123446777777655 356777665442 1111000 000000000
Q ss_pred CCCceeccCCCcchHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHcCCCC---eEEecCCCceEEEEEEc
Q 046506 155 YKDWQITLSRRFRSLKLWFVLRNY--------GVANLRHFLRSHVNMAKLFERLVGSDKR---FEVVFPRHFAVVCFRVS 223 (310)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~a~~l~~~L~~~~~---~~v~~~~~~~~v~~~~~ 223 (310)
....+ ........+...+ ....++...++..+..+.+.+.|++... +..+ +++.+.+.| .
T Consensus 285 ---~~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~G~F~~--~ 355 (401)
T d7aata_ 285 ---PMYSN---PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMFCF--T 355 (401)
T ss_dssp ---HHHSS---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSEEE--C
T ss_pred ---ccccc---cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceE-CCCCeEEEe--c
Confidence 00000 0111111111111 1234556666677778888888887521 1222 234443333 2
Q ss_pred CCcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHH
Q 046506 224 PSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~ 301 (310)
+.+ .++.++|.++..+++.+. +|||+.. .++++|+++.++|.++.
T Consensus 356 ~ls------------------------~e~~~~L~~e~gV~~~pg-------~Ris~a~--~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 356 GLK------------------------PEQVERLTKEFSIYMTKD-------GRISVAG--VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CCC------------------------HHHHHHHHHHHCEECCTT-------CEEEGGG--CCTTTHHHHHHHHHHHH
T ss_pred CCC------------------------HHHHHHHHHhCCEEECCC-------cEEEecc--CCHHHHHHHHHHHHHHh
Confidence 211 133455555444555432 4999763 67778999999998875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.00 E-value=1.9e-09 Score=95.83 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=101.6
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccc
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~ 84 (310)
.+|.. .++++++++. ..++++ .+......+. .+.++++++. .|...++++|.++|+++|++|+-|+||+
T Consensus 80 ~~g~~---pv~~Di~~~~-~~~~~~-~~~~~~~~~~---~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a 148 (374)
T d1o69a_ 80 YLKAK---PVFIDCDETY-NIDVDL-LKLAIKECEK---KPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEA 148 (374)
T ss_dssp HTTCE---EEEECBCTTS-SBCHHH-HHHHHHHCSS---CCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTC
T ss_pred hccce---eEeccccccc-cccccc-ccccchhccc---cccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhh
Confidence 34555 8888888752 234433 3333222211 1335555544 5778899999999999999999999998
Q ss_pred cccccChhhhhhhcCCCCCCeeeeecccccccccceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCC
Q 046506 85 GSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 164 (310)
.+....... +...+++-++++.+.|.+.+. |.|++++.+++...+............ ... .....|.
T Consensus 149 ~g~~~~~~~---~G~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~~~g~~~~-------~~~--~~~~~G~ 215 (374)
T d1o69a_ 149 LGSFYKNKA---LGTFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQARENC-------LHY--EHLDYGY 215 (374)
T ss_dssp TTCEETTEE---TTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCCSS-------SSC--CCSSCCC
T ss_pred hcceECCee---cCCCCceEEEeccCccccccc-cceeehhhhHHHHHhhccccccccccc-------ccc--ccccCCc
Confidence 766432211 112333455666667988765 557888888766544432110000000 000 0011222
Q ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 046506 165 RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSD 204 (310)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~L~~~ 204 (310)
.++.-.+.+++.......++++.++..++++++.+.|.+.
T Consensus 216 N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 216 NYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp BCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhcccc
Confidence 2333334444444444567788888888999999999875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.98 E-value=1.3e-09 Score=98.28 Aligned_cols=247 Identities=13% Similarity=0.093 Sum_probs=132.8
Q ss_pred ecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEeec
Q 046506 5 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVDA 81 (310)
Q Consensus 5 ~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD~ 81 (310)
..|.. .+.+.+..+.+.+..|++.+++.+...+. ...+++...++|++|.+.+ +++|+++|++||++++.|.
T Consensus 149 ~~G~~--~v~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De 223 (412)
T d1ajsa_ 149 TAGFK--DIRSYRYWDTEKRGLDLQGFLSDLENAPE---FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS 223 (412)
T ss_dssp HTTCS--CEEEEECEETTTTEECHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HcCCe--EEEeecccccccccccHHHHHHHHHhccC---CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecH
Confidence 44544 23334443334567899998888766432 2457777788999999876 8889999999999999999
Q ss_pred ccccccccChhhhh----hhcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCC
Q 046506 82 AYAGSACICPEFRH----FIDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYK 156 (310)
Q Consensus 82 a~~~~~~~~~~~~~----~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 156 (310)
++............ .......-.++..+..|.++.| ..+|++.+..... ....... .++......
T Consensus 224 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~-~~~~~~~-~~~~~~~~~-------- 293 (412)
T d1ajsa_ 224 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEP-DSILRVL-SQMQKIVRV-------- 293 (412)
T ss_dssp SCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSH-HHHHHHH-HHHHHHHHT--------
T ss_pred hhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHH-HHHHHHH-HHHHHHhhc--------
Confidence 99655443321110 0011112345667777877765 3477776665421 1110000 000000000
Q ss_pred CceeccCCCcchHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHcCCCC---eEEecCCCceEEEEEEcCCcch
Q 046506 157 DWQITLSRRFRSLKLWFVLR-----NYGVANLRHFLRSHVNMAKLFERLVGSDKR---FEVVFPRHFAVVCFRVSPSAVM 228 (310)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~a~~l~~~L~~~~~---~~v~~~~~~~~v~~~~~~~~~~ 228 (310)
...+.....+..+...+. ......++.+.++..++.+.+.+.|.++.. +..+ .++.+.+++ .+.+
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i-~~~~G~F~~--~~ls-- 366 (412)
T d1ajsa_ 294 --TWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHI-TDQIGMFSF--TGLN-- 366 (412)
T ss_dssp --TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHH-HHCCSSEEE--CCCC--
T ss_pred --cccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeee-cCCCeEEEe--cCCC--
Confidence 000000011111111111 011234556677777788888888877521 1112 222333322 2221
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 046506 229 DKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEAL 304 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~~ 304 (310)
.+..++|.++..+++.+. . ||++.. .++++|+++.++|.+.++++
T Consensus 367 ----------------------~~~v~~L~~e~gV~~vpg----~---Ri~~ag--~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 367 ----------------------PKQVEYLINQKHIYLLPS----G---RINMCG--LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp ----------------------HHHHHHHHHTTCEECCTT----S---EEEGGG--CCTTTHHHHHHHHHHHHHHC
T ss_pred ----------------------HHHHHHHHHhCCEEEeCC----C---eEEecc--CCHHHHHHHHHHHHHHHHhc
Confidence 123345555555555442 1 999663 66789999999999988765
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=98.98 E-value=2.5e-09 Score=96.38 Aligned_cols=119 Identities=12% Similarity=-0.012 Sum_probs=83.8
Q ss_pred eecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEee
Q 046506 4 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHVD 80 (310)
Q Consensus 4 ~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~vD 80 (310)
+..|.. ++.+|..+.+.+.++.+.+++.+...++ .+.++++..++|++|.+.+ +++|+++|++++++++.|
T Consensus 142 ~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~D 215 (412)
T d1yaaa_ 142 ENQGLK---TATYPYWANETKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFD 215 (412)
T ss_dssp HTTTCC---EEEEECEETTTTEECHHHHHHHHHHSCT---TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCc---eecccccccccccccchhhhcccccCCC---ceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeec
Confidence 445665 8999986666678999999999876543 2467888888999999876 888999999999999999
Q ss_pred cccccccccChhhhh-----h--hcCCCCCCeeeeecccccccc-cceEEEEEeCc
Q 046506 81 AAYAGSACICPEFRH-----F--IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDP 128 (310)
Q Consensus 81 ~a~~~~~~~~~~~~~-----~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~ 128 (310)
.++............ . ......--++..|..|.++.| .-+|++++.++
T Consensus 216 e~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 271 (412)
T d1yaaa_ 216 TAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALT 271 (412)
T ss_dssp ESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECC
T ss_pred ceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchh
Confidence 999755543321110 0 001111225668999988764 55788777654
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=2.9e-10 Score=102.08 Aligned_cols=241 Identities=12% Similarity=0.031 Sum_probs=132.5
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|..+.+.+..+.+.+++.+..... ...++++..++|++|.+.+ +++|+++|++|+++++.
T Consensus 137 ~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~ 210 (396)
T d2q7wa1 137 FNSAGLE---VREYAYYDAENHTLDFDALINSLNEAQA---GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp HHHTTCE---EEEEECEETTTTEECHHHHHHHHTTCCT---TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCe---eEecccccccccccccchHHHHHHHhcc---CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEE
Confidence 3456776 8889987755566788888877654322 3567778888999999866 66899999999999999
Q ss_pred ecccccccccChhhhhh---hcCCCCCCeeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCC
Q 046506 80 DAAYAGSACICPEFRHF---IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDY 155 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~---~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 155 (310)
|.++.......+..... ..+...-..+..+..|.++.| .-+|++.+.... +................
T Consensus 211 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~-~~~~~~~~~~~~~~~~~-------- 281 (396)
T d2q7wa1 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAAD-SETVDRAFSQMKAAIRA-------- 281 (396)
T ss_dssp EESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSS-HHHHHHHHHHHHHHHHT--------
T ss_pred eccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhH-HHHHHHhhhhhhhhhhc--------
Confidence 99996554322211110 001112335557778887665 347777766542 11111000000000000
Q ss_pred CCceeccCCCcchHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHcCCC-C--eEEecCCCceEEEEEEcC
Q 046506 156 KDWQITLSRRFRSLKLWFVLRNY--------GVANLRHFLRSHVNMAKLFERLVGSDK-R--FEVVFPRHFAVVCFRVSP 224 (310)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~a~~l~~~L~~~~-~--~~v~~~~~~~~v~~~~~~ 224 (310)
...+ .......++...+ ..+.++.+.++..++.+.+.+.|.++. . +..+.++. +.+.| .+
T Consensus 282 ---~~~~---~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~-G~F~~--~~ 352 (396)
T d2q7wa1 282 ---NYSN---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQN-GMFSF--SG 352 (396)
T ss_dssp ---TTSS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCC-SSEEE--CC
T ss_pred ---cccC---CCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCC-eEEEe--eC
Confidence 0000 0111112222221 124455666677778888888888751 1 22222333 33333 22
Q ss_pred CcchhhhhhhhccccchhHHHHHHHHHHHHHHHHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHH
Q 046506 225 SAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~ 300 (310)
.+ .+..++|.++..+++.+. . |||+.. .++++|+++.++|+++
T Consensus 353 l~------------------------~e~~~~L~~e~gV~~~~g----~---Ri~~a~--l~~~~i~~~~~ai~~v 395 (396)
T d2q7wa1 353 LT------------------------KEQVLRLREEFGVYAVAS----G---RVNVAG--MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp CC------------------------HHHHHHHHHHHCEECCTT----C---EEEGGG--CCTTTHHHHHHHHHHH
T ss_pred CC------------------------HHHHHHHHHhCCEEECCC----C---EEEecC--CCHHHHHHHHHHHHHh
Confidence 11 133455554434444332 2 999763 5677899999999876
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.5e-08 Score=91.74 Aligned_cols=224 Identities=8% Similarity=-0.016 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEecc-CCcccccC-C---hHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCC
Q 046506 27 SPDSLMAKINSDVEAGLIPLFLCATIG-TTAITAVD-T---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 101 (310)
Q Consensus 27 d~~~Le~~i~~~~~~~~~~~~v~~~~~-~~~~G~~~-p---l~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~ 101 (310)
+++++++.+.+.. .....+++.-. .+..|.+. | +++|.++|++||+++++|..+.++............++
T Consensus 190 ~~~~~~~~~~~~~---~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v- 265 (429)
T d1s0aa_ 190 DMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI- 265 (429)
T ss_dssp GGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred hhhhhhhhhhhcC---CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccccccee-
Confidence 4556666555442 22334444322 23344433 2 89999999999999999999977644443222112233
Q ss_pred CCCeeeeecccccccc-cceEEEEEeCchhHHhhhcc-CCccccccccccccccCCCCceeccCCCcchHHHHHHHHHhC
Q 046506 102 GADSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLST-NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179 (310)
Q Consensus 102 ~~D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (310)
..|+++++ |.+++. ...|++.++++ .. +.+.. ...-+...+ + -++.+..+.+..++|+.+.
T Consensus 266 ~PDi~~~g--K~l~gG~~p~~av~~~~~-i~-~~~~~~~~~~~~~~~------------T-~~gnp~~~aaa~a~L~~i~ 328 (429)
T d1s0aa_ 266 APDILCLG--KALTGGTMTLSATLTTRE-VA-ETISNGEAGCFMHGP------------T-FMGNPLACAAANASLAILE 328 (429)
T ss_dssp CCSEEEEC--GGGGTSSSCCEEEEECHH-HH-HHHHTSTTSSCSCCC------------T-TTTCHHHHHHHHHHHHHHH
T ss_pred cccccccc--cccccccccccchhhHHH-HH-hccCCCCCcceeecC------------C-CCCCcccchhhhccccccc
Confidence 37888875 656432 34566666544 32 22211 111000000 0 0111223334444555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CCeEEecCCCceEEEEEEcCCcchhhhhhhhccccchhHHHHHHHHHHHHHH
Q 046506 180 VANLRHFLRSHVNMAKLFERLVGSD---KRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLES 256 (310)
Q Consensus 180 ~~~~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (310)
. ++..++..++.++|+++|.++ +.+.=+.. ...+..+.+..+. . ...+.+.
T Consensus 329 ~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg-~Gl~~~~e~~~~~---------------~-------~~~~~~~ 382 (429)
T d1s0aa_ 329 S---GDWQQQVADIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTHPV---------------N-------MAALQKF 382 (429)
T ss_dssp T---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESSCB---------------C-------HHHHHHH
T ss_pred c---ccccchhhHHHHHHHHHHHHhccCCceEEEee-cccEEEEEecCcc---------------c-------HHHHHHH
Confidence 3 345666677888888888654 33211101 1234556665432 0 1356677
Q ss_pred HHhcCcEEEEEeEECCEeEEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 046506 257 INASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEA 303 (310)
Q Consensus 257 l~~~g~~~~~~~~~~~~~~iRis~~~~~~t~edi~~li~~l~~~~~~ 303 (310)
+.++|. ++.+. ..++|++++ .-+|++|||.++++|.+.+++
T Consensus 383 ~~~~Gl-~~~~~----g~~i~~~Pp-l~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 383 FVEQGV-WIRPF----GKLIYLMPP-YIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp HHHTTE-ECCCB----TTEEEECCC-TTCCHHHHHHHHHHHHHHTSS
T ss_pred HHHCCc-EEEec----CCEEEEeCC-cCCCHHHHHHHHHHHHHHHHh
Confidence 777874 33321 358999955 568999999999999987654
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=4e-10 Score=101.20 Aligned_cols=120 Identities=16% Similarity=0.036 Sum_probs=80.8
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|++.++.+..|.+++.+.+...+. .+.++++..++|++|.+.+ +++|+++|++|+++++.
T Consensus 138 ~~~~G~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 211 (397)
T d3tata_ 138 FAGAGFE---VSTYPWYDEATNGVRFNDLLATLKTLPA---RSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp HHTTTCC---CEECCCCCTTTSSCCHHHHHHHHTTCCS---SCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHcCCE---EEEEecchhhccccchHHHHHHhhhccc---ccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEe
Confidence 3456666 9999998776678898888888764322 2456777888999999866 67899999999999999
Q ss_pred ecccccccccChhhhhh---hcCCCCCCeeeeecccccccc-cceEEEEEeCc
Q 046506 80 DAAYAGSACICPEFRHF---IDGVEGADSFSLNAHKWFFTT-LDCCCLWVKDP 128 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~---~~~~~~~D~~~~~~hK~l~~p-~g~g~l~v~~~ 128 (310)
|.++....+..+..... ......--++..+..|.++.| .-+|++.....
T Consensus 212 De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 264 (397)
T d3tata_ 212 DIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCE 264 (397)
T ss_dssp CBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECS
T ss_pred ehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchh
Confidence 99996554332211111 111111125668889988765 33566665544
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.73 E-value=5.4e-09 Score=93.41 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=77.7
Q ss_pred ceecCCCCCCEEEEecCCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCC---hHHHHHHHHHhCcEEEe
Q 046506 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT---LKPLCDVAKQFGIWVHV 79 (310)
Q Consensus 3 a~~~g~~~~~v~~v~~~~~~~~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~p---l~~I~~l~~~~g~~l~v 79 (310)
++.+|.. ++.+|..+.+.+..+.+++++....... ...++++...+|++|...+ +++|+++|++|+++++.
T Consensus 134 ~~~~g~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~ 207 (394)
T d2ay1a_ 134 MNFMGLP---VQTYRYFDAETRGVDFEGMKADLAAAKK---GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLI 207 (394)
T ss_dssp HHHHTCC---EEEEECEETTTTEECHHHHHHHHHTCCT---TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCE---EEEecccchhcccccchhHHHHHhhccc---CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEE
Confidence 3456776 8889886654567788888887765432 2457777788999999866 77899999999999999
Q ss_pred ecccccccccChhhhhhh--cCCCCCCe-eeeecccccccc-cceEEEEEeCc
Q 046506 80 DAAYAGSACICPEFRHFI--DGVEGADS-FSLNAHKWFFTT-LDCCCLWVKDP 128 (310)
Q Consensus 80 D~a~~~~~~~~~~~~~~~--~~~~~~D~-~~~~~hK~l~~p-~g~g~l~v~~~ 128 (310)
|.++.......+...... ........ +..+..|.++.| ..+|++.+...
T Consensus 208 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~ 260 (394)
T d2ay1a_ 208 DLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCA 260 (394)
T ss_dssp EECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECS
T ss_pred eccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchh
Confidence 999965544322111100 00011223 345666766654 45666666554
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| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.29 E-value=8.3e-07 Score=79.70 Aligned_cols=216 Identities=10% Similarity=-0.016 Sum_probs=122.5
Q ss_pred cccCHHHHHHHHHHHHHcCCCcEEEEEeccCCcccccCChHHHHHHHHHhCcEEEeecccccccccChhhhhhhcCCCCC
Q 046506 24 YGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGA 103 (310)
Q Consensus 24 ~~id~~~Le~~i~~~~~~~~~~~~v~~~~~~~~~G~~~pl~~I~~l~~~~g~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 103 (310)
+.+|.+.+++++++. +.++++..++|++|.+.. +..+++.+++|.++....+. + ......-
T Consensus 182 ~~~D~~~~~~~~~~~------~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~-----~-~~~~~~~ 242 (425)
T d2hoxa1 182 WAGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYT-----P-IKYKADE 242 (425)
T ss_dssp EEEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTS-----C-CCSCBCC
T ss_pred cCCCHHHHHhhCCCC------ceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCcccc-----c-hhhhcCC
Confidence 456777777766554 458999999999998632 33468999999998533211 1 1111234
Q ss_pred Ceeeeecccccccc-cceEEEEEeCchhHHhhhccCCccccccccccccccCCCCceeccCCCcchHHHHHHHHH-----
Q 046506 104 DSFSLNAHKWFFTT-LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRN----- 177 (310)
Q Consensus 104 D~~~~~~hK~l~~p-~g~g~l~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 177 (310)
+++..+..|.++.| .-+|+++++++...++..... .+.... .+ ....+++.++++.
T Consensus 243 ~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~-~~~~~~----------------vs-~~~Q~aa~~aL~~~~~~~ 304 (425)
T d2hoxa1 243 DILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-TKNTEG----------------TP-RETQLRSLKVLKEVVAMV 304 (425)
T ss_dssp SEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-HHHTSS----------------CC-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhh-ccCccc----------------CC-HHHHHHHHHHhhccHHHH
Confidence 77889999998865 447888887775432221100 110000 00 0111222222221
Q ss_pred -----hCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEecCCC--------------ceEEEEEEcCCcchhhhhhhhccc
Q 046506 178 -----YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRH--------------FAVVCFRVSPSAVMDKLKTKYENS 238 (310)
Q Consensus 178 -----~~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~ 238 (310)
...+-++...++..+..+++.+.|.+.+.+.+...|. .....+......
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~------------ 372 (425)
T d2hoxa1 305 KTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE------------ 372 (425)
T ss_dssp HHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh------------
Confidence 1223455566677777888899998876665432222 122223322210
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCcEEEEEeEEC-CEeEEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 046506 239 LLSEEERINEFNRELLESINASGKAYMTHAVLG-GIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302 (310)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~iRis~~~~~~t~edi~~li~~l~~~~~ 302 (310)
. .++.+.|.+.|++..++...+ +.+.+|+|+. +++|+++.+++.|+++++
T Consensus 373 ----~-------~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~---~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 373 ----D-------KDCYQTFQNGRINTQNGVGFEASSRYVRLSLI---KTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp ----G-------CSHHHHHHHTTEECEEGGGGTSCTTEEEEECS---SCHHHHHHHHHHHHHHHT
T ss_pred ----H-------HHHHHHHHhCCEEEEechhcCCCCCEEEEEec---CCHHHHHHHHHHHHHHHh
Confidence 0 123444556665554444333 3579999954 578899999999998864
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