Citrus Sinensis ID: 046540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIYHP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHcccHHcccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAPKHVFFILALTCLIMANIanatsrndclnnnmKLGYDLATRLeasggltecwnvlmeppkscsnEIVIFFLSLIARLILALTVAALLIYHP
Flexible Loop (DISEMBL)
MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIYHP
Low Complexity Region (SEG)
MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSliarlilaltvaalliYHP
Disordered region (IsUnstruct)
****HVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIY**
Disordered Region (DISOPRED)
****HVFFILALTCLIMANIANATSRND****************EASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIYHP
Disordered Region (DISEMBL)
MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIYHP
Disordered Region (DISPRO)
*APKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIYHP
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALLIYHP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q9T039	127	Egg cell-secreted protein	yes	no	0.419	0.307	0.585	0.0001
Q9SJ24	125	Egg cell-secreted protein	no	no	0.741	0.552	0.395	0.0004

>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 39 DLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIARL 79
          ++A RL+ SGGL ECWN L E  KSC+NEIV+FFL+   +L
Sbjct: 35 NIAARLQ-SGGLMECWNALYE-LKSCTNEIVLFFLNGETKL 73

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 12/81 (14%)

Query: 1  MAPKHVFFILALTCLIMANIANAT--SRNDCLNNNMKLGYDLATRLEASGGLTECWNVLM 58
          MA    F    +  L++ NI+  T     D  N        +A RL   GGL ECWN L 
Sbjct: 1  MASNTSFLFATIAILLVLNISGRTLPETEDSTN--------IAARLNG-GGLMECWNALY 51

Query: 59 EPPKSCSNEIVIFFLSLIARL 79
          E  KSC+NEIV+FFL+   +L
Sbjct: 52 EL-KSCTNEIVLFFLNGETKL 71

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
359482498	128	PREDICTED: uncharacterized protein LOC10	0.709	0.515	0.513	1e-08
296082551	135	unnamed protein product [Vitis vinifera]	0.709	0.488	0.464	1e-06

>gi|359482498|ref|XP_002274398.2| PREDICTED: uncharacterized protein LOC100260034 [Vitis vinifera] gi|147772490|emb|CAN65099.1| hypothetical protein VITISV_039724 [Vitis vinifera] gi|297743029|emb|CBI35896.3| unnamed protein product [Vitis vinifera]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 8/74 (10%)

Query: 1  MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
          MA K +F ++ALT L+    ANA +  D   N    G DL TRLE SGGL ECWN LME 
Sbjct: 1  MALKTLFLLVALTWLM----ANAAATRDLPTNP---GLDLTTRLETSGGLVECWNALME- 52

Query: 61 PKSCSNEIVIFFLS 74
           + C+NEI++FFL+
Sbjct: 53 IRQCTNEIILFFLN 66

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082551|emb|CBI21556.3| unnamed protein product [Vitis vinifera]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 4  KHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKS 63
          K+VF ++AL+ LI     NA++  +   +      DL  RLE SGGL ECWN L+E  KS
Sbjct: 5  KNVFLLVALSWLI----TNASASRELPMSMKPAELDLVARLETSGGLVECWNALVE-LKS 59

Query: 64 CSNEIVIFFLS 74
          C+NEI++FFL+
Sbjct: 60 CTNEIILFFLN 70

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2136293	127	EC1.4 "AT4G39340" [Arabidopsis	0.731	0.535	0.432	3.8e-07
TAIR|locus:2052536	125	EC1.2 "AT2G21740" [Arabidopsis	0.709	0.528	0.405	1.3e-06
TAIR|locus:2052556	125	EC1.3 "AT2G21750" [Arabidopsis	0.709	0.528	0.364	7e-06
TAIR|locus:2176080	155	EC1.5 "AT5G64720" [Arabidopsis	0.365	0.219	0.514	0.00085

TAIR|locus:2136293 EC1.4 "AT4G39340" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 32/74 (43%), Positives = 41/74 (55%)

Query:     1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
             MA    F    +T LI+  + N T     L        ++A RL+ SGGL ECWN L E 
Sbjct:     1 MASNTTFLFSTVTLLII--LLNTTVSGRDLPAESST--NIAARLQ-SGGLMECWNALYEL 55

Query:    61 PKSCSNEIVIFFLS 74
              KSC+NEIV+FFL+
Sbjct:    56 -KSCTNEIVLFFLN 68

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052536 EC1.2 "AT2G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 30/74 (40%), Positives = 39/74 (52%)

Query:     1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
             MA    F    +  L++ NI+  T      + N      +A RL   GGL ECWN L E 
Sbjct:     1 MASNTSFLFATIAILLVLNISGRTLPETEDSTN------IAARLNG-GGLMECWNALYEL 53

Query:    61 PKSCSNEIVIFFLS 74
              KSC+NEIV+FFL+
Sbjct:    54 -KSCTNEIVLFFLN 66

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052556 EC1.3 "AT2G21750" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:     1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
             MA    F  + +T L++ N+++        + N      +A RL   GGL +CW+ L E 
Sbjct:     1 MASNTSFLFVTVTLLLVLNVSSRALPPVADSTN------IAARL-TGGGLMQCWDALYEL 53

Query:    61 PKSCSNEIVIFFLS 74
              KSC+NEIV+FFL+
Sbjct:    54 -KSCTNEIVLFFLN 66

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2176080 EC1.5 "AT5G64720" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00085, P = 0.00085
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query:    40 LATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLS 74
             +AT    +G L +CWN  +E  KSC++EIV FFLS
Sbjct:    40 MATDHSGAGNLMDCWNAGLEL-KSCTDEIVKFFLS 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        77   0.00091  102 3  11 22  0.48    28
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  109 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.73u 0.26s 9.99t   Elapsed:  00:00:01
  Total cpu time:  9.73u 0.26s 9.99t   Elapsed:  00:00:01
  Start:  Mon May 20 16:57:42 2013   End:  Mon May 20 16:57:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005576 "extracellular region" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF05617	70	Prolamin_like: Prolamin-like; InterPro: IPR008502	98.95
PLN00213	118	predicted protein; Provisional	98.26
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	96.45

>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana

Probab=98.95  E-value=1.9e-10  Score=71.59  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=37.5

Q ss_pred             hhhhhhcCCCccchhhhHHHhhcch-hhccchhhhheecccC
Q 046540           52 ECWNVLMEPPKSCSNEIVIFFLSLI-ARLILALTVAALLIYH   92 (93)
Q Consensus        52 ~CW~al~el~~sCt~EIvlFFLnGe-tyLg~~CC~Ai~~i~h   92 (93)
                      +||+++.+. ++|.+||..+|+||+ .++|++||.+|+-++.
T Consensus         1 kc~~~~~~~-~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~   41 (70)
T PF05617_consen    1 KCLSSCAKS-PGCGDEIFNSFFNGNKKNIGPECCKAINKMGK   41 (70)
T ss_pred             ChHHHcCCc-cchHHHHHHHHHcCCCCCCChHHHHHHHHHhH
Confidence            599999998 999999999999999 9999999999988764

>PLN00213 predicted protein; Provisional

Probab=98.26  E-value=1.5e-06  Score=62.78  Aligned_cols=82  Identities=23%  Similarity=0.250  Sum_probs=55.3

Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhcccccccccCccCCccHHHHhhhcCCchhhhhhhcCCCccchhhhHHHhhcchh-hc
Q 046540            1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIA-RL   79 (93)
Q Consensus         1 MA~~~~fl~~~ltlli~a~ia~~~a~r~~~~~~~~~~~~La~RL~~gg~~~~CW~al~el~~sCt~EIvlFFLnGet-yL   79 (93)
                      |..|+++.++.+.++++...|.- ..+..+++.+-+.    .++-+-.+..+||.+|+.+ +-|.-||.-=-.+|+- .+
T Consensus         1 m~iknV~~ll~v~cIvvsVna~l-pqf~~~fp~~~p~----~~~pg~pd~~kCwSSl~~v-pGCv~EI~~si~~gkf~~I   74 (118)
T PLN00213          1 MSIKNVFLLLAVLCIIVSVNAQL-PQFPAQLPFLFPF----QLIPGLPDITKCFSSVMDI-PGCIAEISQSIFTGKFGNL   74 (118)
T ss_pred             CchHHHHHHHHHHHHHheeccCC-CCCCCCCCCCCCc----cCCCCCccHHHHHHHHcCC-cchHHHHHHHHHhchhccc
Confidence            78899999998888887322220 1121122211111    1121112556899999999 9999999998888988 89


Q ss_pred             cchhhhhee
Q 046540           80 ILALTVAAL   88 (93)
Q Consensus        80 g~~CC~Ai~   88 (93)
                      |+.||.|+.
T Consensus        75 g~aCCKAf~   83 (118)
T PLN00213         75 GPACCKAFL   83 (118)
T ss_pred             chHHHHHHH
Confidence            999999974

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=96.45  E-value=0.0026  Score=43.53  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=21.1

Q ss_pred             CCchHHHHHHHHHHHHHHhhhhhcccccc
Q 046540            1 MAPKHVFFILALTCLIMANIANATSRNDC   29 (93)
Q Consensus         1 MA~~~~fl~~~ltlli~a~ia~~~a~r~~   29 (93)
                      ||||+ |||++|.|.++-+|||.+++|++
T Consensus         1 MaSK~-~llL~l~LA~lLlisSevaa~~~   28 (95)
T PF07172_consen    1 MASKA-FLLLGLLLAALLLISSEVAAREL   28 (95)
T ss_pred             CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence            99777 66666666666668898888888

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00