Citrus Sinensis ID: 046670

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISvlkdipdedgdrefgIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQtvdlsskastlSFYMFIWK
Flexible Loop (DISEMBL)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLkdipdedgdrEFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTvdlsskastlsFYMFIWK
Low Complexity Region (SEG)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK
Disordered region (IsUnstruct)
*****FLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIW*
Disordered Region (DISOPRED)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK
Disordered Region (DISEMBL)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK
Disordered Region (DISPRO)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.993	0.386	0.477	3e-37
B7FA90	404	Probable homogentisate ph	no	no	0.993	0.376	0.464	6e-36
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.993	0.370	0.424	2e-32
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.993	0.371	0.418	1e-30
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.888	0.352	0.3	7e-11
Q0D576	379	Probable homogentisate ph	no	no	0.888	0.358	0.285	1e-08

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 107/153 (69%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR + +  +  +  R +++Q A+++HIQ +V GRPI  TR L+FA A    F  VI++ 
Sbjct: 229 WKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALF 288

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD +GD+ FGIR+ SV LG++ V W CV +L +AY  A++VG T SP++ SK+++++
Sbjct: 289 KDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGAT-SPFIWSKVISVV 347

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LAT LW +A++VDLSSK    S YMFIWK
Sbjct: 348 GHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKRS+ +  L  +  R +++Q A+F+HIQ +V  RP   TR L+FA A    F  VI++ 
Sbjct: 240 WKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALF 299

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD +GDR FGI++ SV LG++ V W+CV +L +AY  A+++G TS+  L SK  T++
Sbjct: 300 KDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSA-CLWSKYATVV 358

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H++LA +LW++++++DL+SK +  SFYMFIWK
Sbjct: 359 GHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 100/153 (65%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WK+   LT +  + +  +     +F+H+Q  V  RP    R L+F  AI   +  VI++ 
Sbjct: 246 WKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALF 305

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD +GD +FGI++LS+ LG + V W+CV +L + YG  ++VG T SP L SK++T++
Sbjct: 306 KDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGAT-SPILWSKIITVL 364

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H++LA++LW+ A++VDL+S     SFYMFIWK
Sbjct: 365 GHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 98/153 (64%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR  F+  +  +    L L  +YF H+Q  VL RPI   R+L F VA    +   +++ 
Sbjct: 245 WKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALS 304

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD +GD+E GI + +V LG++   W+CV    +A+G  ++ G + S +  +K+ T +
Sbjct: 305 KDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCS-HFWTKIFTGM 363

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            +++LA++LW+QA++VDLS KAST SFYMFIWK
Sbjct: 364 GNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 16  RGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIR 75
           RG LL F  + H  +  LG P   +  + F  +    F  VI++ KD+PD +GDR+F I 
Sbjct: 237 RGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQIS 295

Query: 76  TLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQT 135
           TL+  LG  ++ +L   +L++ Y +A+ +     P +    + I +H +LA+ L  Q   
Sbjct: 296 TLATKLGVRNIAFLGSGLLLVNYVSAISLAFY-MPQVFRGSLMIPAHVILASGLIFQTWV 354

Query: 136 VDLSS--KASTLSFYMFIWK 153
           ++ ++  K +   +Y FIW 
Sbjct: 355 LEKANYTKEAISGYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 16  RGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIR 75
           RG LL F  + +  +  LG     +  + F       F  VI++ KD+PD +GDR++ I 
Sbjct: 230 RGFLLNFGVY-YATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQIS 288

Query: 76  TLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQT 135
           TL+  LG  ++ +L   +L+  Y AA+ V     P    + V +  H+ LA  +  Q   
Sbjct: 289 TLATKLGVRNIAFLGSGLLIANYVAAIAVAFL-MPQAFRRTVMVPVHAALAVGIIFQTWV 347

Query: 136 VDLS--SKASTLSFYMFIWK 153
           ++ +  +K +   +Y FIW 
Sbjct: 348 LEQAKYTKDAISQYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
224143266	284	predicted protein [Populus trichocarpa]	0.993	0.535	0.535	2e-41
219842170	411	homogentisate geranylgeranyl transferase	1.0	0.372	0.532	2e-40
295656253	401	homogentisate geranylgeranyl transferase	0.993	0.379	0.503	5e-39
374461300	239	aromatic prenyltransferase, partial [Epi	0.993	0.635	0.509	3e-38
171190284	317	homogentisate geranylgeranyl transferase	0.993	0.479	0.529	7e-38
359476155	397	PREDICTED: probable homogentisate phytyl	0.993	0.382	0.509	7e-38
296082088	398	unnamed protein product [Vitis vinifera]	0.993	0.381	0.509	9e-38
33391144	404	homogentisic acid geranylgeranyl transfe	0.993	0.376	0.490	1e-37
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.993	0.372	0.490	1e-37
297606269	278	Os06g0646900 [Oryza sativa Japonica Grou	0.993	0.546	0.490	1e-37

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 115/153 (75%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WK+ +FL     ++ R +++Q A+F+H+QK+VLG+   +TR+L+FA A  C F  VI++ 
Sbjct: 133 WKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAFMCFFSAVIALF 192

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDR++GI++ SV LG+E V WLCV +L+IAYGAAV+VG  SS +L SK +TI+
Sbjct: 193 KDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVG-ASSTFLPSKFITIL 251

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H  LA +LW +A++VDL+SK S  SFYMFIWK
Sbjct: 252 GHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WK+ +FL     ++ R +++Q A+F+HIQK+VLG+ I I R+LMFA A  C F   I++ 
Sbjct: 245 WKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALF 304

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLS-KLVTI 119
           KDIPD +GDR++GI++ SV LG+E VLWLCV +L++AYGAAV+ G +S   LL  KL+T+
Sbjct: 305 KDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITM 364

Query: 120 ISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
           I HS +A +LW +AQ VDL+S+ S  SFYMFIWK
Sbjct: 365 IGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR++FL     ++ R + +  A+F HIQKYVLGRP+   R+L FA      F  VI++ 
Sbjct: 237 WKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALF 296

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDR+FGI++ SV LG++ V WLC+ +L+IAY +A+++G +SS +LLSKLVT+I
Sbjct: 297 KDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSS-FLLSKLVTVI 355

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H  LA++LW +A +V+L   +S  SFYM IWK
Sbjct: 356 GHCTLASILWRRANSVNLEDNSSMTSFYMSIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WK+S+ LT++  +  R L++   +F+H+QKYVLGRP  IT+ +MFAVA       VI+V+
Sbjct: 67  WKKSAVLTSVCIISVRALVIPLGFFLHMQKYVLGRPAIITKPVMFAVAFMAIISTVIAVI 126

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGD  FG+++L++ LGKE V WL V  L++AYG AVIVG  SS  + +K++T++
Sbjct: 127 KDIPDVDGDEAFGLQSLTIRLGKEKVFWLGVSTLLMAYGTAVIVG-ASSTLMSNKIITVL 185

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LA++LW +A+TV +S  ASTLSFY+F+WK
Sbjct: 186 GHCILASILWTRARTVVISEPASTLSFYLFVWK 218

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WK+++FL  +  V+ R + +Q   F HIQ+YVLGRP+  +R+L FA+     F  VI++ 
Sbjct: 153 WKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLAFAIICMTLFVTVIALF 212

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDR+FGI+T++V LGK+ V WLC+ +L+IAYG+AV++G +SS  LLSKLVT+ 
Sbjct: 213 KDIPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIGSSSS-LLLSKLVTVT 271

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LA++LW +A +VDL S  S  SFYMFIWK
Sbjct: 272 GHCILASILWSRAISVDLESNKSITSFYMFIWK 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR   L     ++ R +++Q A+F HIQK+VLGR I  T++++F VA  C F  VI++ 
Sbjct: 233 WKRYPLLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALF 292

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDREFGI++ +V LG++ V WLCV +L++AYGAA ++G +SS   + K  T+ 
Sbjct: 293 KDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPI-KFATVF 351

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H  LA +LW +AQ+VDLSSK +  SFYMFIWK
Sbjct: 352 CHCALALVLWVRAQSVDLSSKEAVTSFYMFIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR   L     ++ R +++Q A+F HIQK+VLGR I  T++++F VA  C F  VI++ 
Sbjct: 209 WKRYPLLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALF 268

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDREFGI++ +V LG++ V WLCV +L++AYGAA ++G +SS   + K  T+ 
Sbjct: 269 KDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPI-KFATVF 327

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H  LA +LW +AQ+VDLSSK +  SFYMFIWK
Sbjct: 328 CHCALALVLWVRAQSVDLSSKEAVTSFYMFIWK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR++FL     +  R +L+Q A+F H+Q++VL RP+A T++++FA    CCF  VI++ 
Sbjct: 240 WKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALF 299

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDR FG+ +LSV LG E V WLC+ +L+ AYGAA++ G  SS  L   ++T+ 
Sbjct: 300 KDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAG-ASSTNLCQMIITVF 358

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LA  LW +AQ  D+ +KA   SFYMFIWK
Sbjct: 359 GHGLLAFALWQRAQHCDVENKAWITSFYMFIWK 391

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR++FL     +  R +L+Q A+F H+Q++VL RP+A T++++FA    CCF  VI++ 
Sbjct: 244 WKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALF 303

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDR FG+ +LSV LG E V WLC+ +L+ AYGAA++ G  SS  L   ++T+ 
Sbjct: 304 KDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAG-ASSTNLCQMIITVF 362

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LA  LW +AQ  D+ +KA   SFYMFIWK
Sbjct: 363 GHGLLAFALWQRAQHCDVENKAWITSFYMFIWK 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297606269|ref|NP_001058202.2| Os06g0646900 [Oryza sativa Japonica Group] gi|255677275|dbj|BAF20116.2| Os06g0646900, partial [Oryza sativa Japonica Group]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKR++FL     +  R +L+Q A+F H+Q++VL RP+A T++++FA    CCF  VI++ 
Sbjct: 114 WKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALF 173

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD DGDR FG+ +LSV LG E V WLC+ +L+ AYGAA++ G  SS  L   ++T+ 
Sbjct: 174 KDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAG-ASSTNLCQMIITVF 232

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LA  LW +AQ  D+ +KA   SFYMFIWK
Sbjct: 233 GHGLLAFALWQRAQHCDVENKAWITSFYMFIWK 265

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.993	0.386	0.477	8e-37
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.993	0.370	0.424	1.8e-32
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.993	0.373	0.424	2.3e-32
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.973	0.379	0.294	3.5e-12

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 73/153 (47%), Positives = 107/153 (69%)

Query:     1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
             WKR + +  +  +  R +++Q A+++HIQ +V GRPI  TR L+FA A    F  VI++ 
Sbjct:   229 WKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALF 288

Query:    61 KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
             KDIPD +GD+ FGIR+ SV LG++ V W CV +L +AY  A++VG TS P++ SK+++++
Sbjct:   289 KDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATS-PFIWSKVISVV 347

Query:   121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
              H +LAT LW +A++VDLSSK    S YMFIWK
Sbjct:   348 GHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 65/153 (42%), Positives = 100/153 (65%)

Query:     1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
             WK+   LT +  + +  +     +F+H+Q  V  RP    R L+F  AI   +  VI++ 
Sbjct:   246 WKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALF 305

Query:    61 KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
             KDIPD +GD +FGI++LS+ LG + V W+CV +L + YG  ++VG TS P L SK++T++
Sbjct:   306 KDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATS-PILWSKIITVL 364

Query:   121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
              H++LA++LW+ A++VDL+S     SFYMFIWK
Sbjct:   365 GHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 65/153 (42%), Positives = 99/153 (64%)

Query:     1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
             WK+   LT +  +    +     +F+H+Q  V  RP    R L+F  AI   +  VI++ 
Sbjct:   243 WKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALF 302

Query:    61 KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
             KDIPD +GD +FGI++LS+ LG + V W+CV +L +AYG  ++VG TS P L SK++T++
Sbjct:   303 KDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATS-PILWSKIITVL 361

Query:   121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
              H++LA++LW+ A++ DL+S     SFYMFIWK
Sbjct:   362 GHAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 45/153 (29%), Positives = 76/153 (49%)

Query:     2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLK 61
             KR      L     RG LL F  + H  +  LG P   +  + F  +    F  VI++ K
Sbjct:   230 KRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITK 288

Query:    62 DIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIIS 121
             D+PD +GDR+F I TL+  LG  ++ +L   +L++ Y +A+ +     P +    + I +
Sbjct:   289 DLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYM-PQVFRGSLMIPA 347

Query:   122 HSMLATLLWHQAQTVDLSS--KASTLSFYMFIW 152
             H +LA+ L  Q   ++ ++  K +   +Y FIW
Sbjct:   348 HVILASGLIFQTWVLEKANYTKEAISGYYRFIW 380


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.141   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      153       153   0.00081  105 3  11 21  0.36    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.35u 0.09s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.35u 0.09s 13.44t   Elapsed:  00:00:02
  Start:  Thu May  9 18:01:29 2013   End:  Thu May  9 18:01:31 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-58
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	7e-26
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	6e-05
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	3e-04
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	0.001
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	0.001
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  182 bits (465), Expect = 2e-58
 Identities = 81/153 (52%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 1   WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVL 60
           WKRS+       +  R +++Q A+F+H+Q +VLGRP   TR L+FA A  C F  VI++ 
Sbjct: 116 WKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALF 175

Query: 61  KDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120
           KDIPD +GDR FGIR+ SV LG++ V WLCV +L +AY AA++VG +SS +L SK++T++
Sbjct: 176 KDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSS-FLWSKIITVL 234

Query: 121 SHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
            H +LA++LW +AQ+VDLSSKA+  SFYMFIWK
Sbjct: 235 GHGILASILWQRAQSVDLSSKAAITSFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 99.3 bits (248), Expect = 7e-26
 Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 6/154 (3%)

Query: 2   KRSSFLTTL--YTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISV 59
           KR   L  L  +TV  RG+++    F+H Q ++LG  + I  T+         F F I++
Sbjct: 144 KRFPLLAALCIFTV--RGVIVNLGLFLHFQ-WLLGGSVLIPPTVWLLTLFVLVFTFAIAI 200

Query: 60  LKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTI 119
            KDIPD +GDR++ I T ++ LGK++V  L  +VL   Y   + VGL S P +      I
Sbjct: 201 FKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNP-AFLI 259

Query: 120 ISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153
           +SH +L  LLW ++Q VDL  K +   FY FIWK
Sbjct: 260 VSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 39  ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAY 98
           I   L+            I +  DI D +GDR+ GIRTL V LG++  L L   +L  A 
Sbjct: 144 IPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAAL 203

Query: 99  GAAVIVGLTSSP--YLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFI 151
              +++ L  +P   LL+ L+  ++  + A LL  +       +       +  +
Sbjct: 204 LLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALLFGLL 258

Length = 259

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 59  VLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKL 116
           ++KD+ D +GDR  G RTL +++G    L++    L++A  A+ +      PYLLS  
Sbjct: 175 IIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL------PYLLSTF 226

Length = 276

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 55  FVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGL 106
           F+  ++ DI D +GDR+ G++TL ++LGKE  L     +L + +   +I+G+
Sbjct: 175 FIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFL-LILNLLFLILLILGV 225

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 37  IAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVI 96
            ++       +     +     ++  I D +GDR+ G+++L V+ G +  L L   +L++
Sbjct: 163 GSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA-LLLLL 221

Query: 97  AYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIW 152
           A    V++GL +    L  L+ ++   + A LL +Q   VD+    +  + +    
Sbjct: 222 ASALLVLLGLLAGLLGLIYLLGLL---VAALLLLYQILIVDVRDPPACFALFDVNL 274

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 57  ISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKL 116
           I  L D    +GDR+ G+R+L V++G +    + V  + +     + + L      ++ +
Sbjct: 177 IMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATI 236

Query: 117 VTII 120
           V ++
Sbjct: 237 VFLL 240

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 57  ISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS-SPYLLSK 115
           I+++ D    +GDR  G+++L V  G E+  W+CV  + I  G      L        + 
Sbjct: 199 IAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAA 258

Query: 116 LVTII 120
           LV +I
Sbjct: 259 LVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.58
PRK12872	285	ubiA prenyltransferase; Reviewed	99.58
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.42
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.41
PRK12882	276	ubiA prenyltransferase; Reviewed	99.41
PRK13105	282	ubiA prenyltransferase; Reviewed	99.39
PRK13591	307	ubiA prenyltransferase; Provisional	99.39
PRK13595	292	ubiA prenyltransferase; Provisional	99.37
PRK12884	279	ubiA prenyltransferase; Reviewed	99.36
PRK13106	300	ubiA prenyltransferase; Reviewed	99.34
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.34
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.34
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.32
PRK12895	286	ubiA prenyltransferase; Reviewed	99.23
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.23
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.23
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.2
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.19
PLN00012	375	chlorophyll synthetase; Provisional	99.19
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.14
PRK05951	296	ubiA prenyltransferase; Reviewed	99.11
PRK12888	284	ubiA prenyltransferase; Reviewed	99.1
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.07
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.01
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.98
PRK12876	300	ubiA prenyltransferase; Reviewed	98.98
PRK12886	291	ubiA prenyltransferase; Reviewed	98.95
PRK12875	282	ubiA prenyltransferase; Reviewed	98.89
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	98.85
PRK12871	297	ubiA prenyltransferase; Reviewed	98.84
PRK12874	291	ubiA prenyltransferase; Reviewed	98.82
PRK13592	299	ubiA prenyltransferase; Provisional	98.8
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	98.79
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.74
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	98.74
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.74
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.73
PLN02922	315	prenyltransferase	98.57
PRK12873	294	ubiA prenyltransferase; Reviewed	98.52
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	98.31
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	98.3
PRK04375	296	protoheme IX farnesyltransferase; Provisional	98.11
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	97.73
PRK13362	306	protoheme IX farnesyltransferase; Provisional	97.45
KOG4581	359	consensus Predicted membrane protein [Function unk	85.04
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	84.59

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=4.6e-52  Score=352.25  Aligned_cols=152  Identities=53%  Similarity=0.989  Sum_probs=150.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      |||+|++|++||++|||+++|+|+|+|||++++|+|..+|+++++.++|+++|+.+++++||+||+||||++|++|+|++
T Consensus       116 ~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~  195 (280)
T PLN02878        116 WKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVR  195 (280)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHhhcC
Q 046670           81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK  153 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~fIWk  153 (153)
                      +|+|+++++|..++.++|++++.+|++++ ..+++++|+.||++++.+||+|++++|++||++++||||||||
T Consensus       196 lG~~~~~~i~~~ll~~aY~~~i~~g~~~~-~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwk  267 (280)
T PLN02878        196 LGQKRVFWLCVNLLEMAYAAAILVGASSS-FLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWK  267 (280)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 8999999999999999999999999999999999999999998

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.1e-40  Score=282.28  Aligned_cols=151  Identities=37%  Similarity=0.651  Sum_probs=146.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      +||+|+++++||+++||+++|+|+|+|++.. .+++..+|++++++++++.+++++++++||+||+||||+.|+||+|++
T Consensus       143 lKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~  221 (308)
T PRK12887        143 LKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLR  221 (308)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHH
Confidence            6999999999999999999999999999875 677788999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHhhcC
Q 046670           81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK  153 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~fIWk  153 (153)
                      +|+|++.+++..++.++|+.+++.|+... ..+++.+++.||++++..+|+|++++|++||+||+||||||||
T Consensus       222 lG~~~a~~l~~~ll~~~y~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~  293 (308)
T PRK12887        222 LGKQAVFKLSCWVLTACYLGMIAVGLLSL-PTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK  293 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            99999999999999999999999999998 8899999999999999999999999999999999999999998

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.58  E-value=5.6e-14  Score=117.87  Aligned_cols=138  Identities=24%  Similarity=0.322  Sum_probs=113.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      .||++.+...|+-.+.+.....|....     .|.   .+++.+++..+..+.+.+.+++||+||+||||+.|++|+|+.
T Consensus       135 ~Kr~~~~~~~~lg~~~~~~~~~g~~a~-----~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~  206 (289)
T COG0382         135 LKRFTFLPQLVLGLAFGLGALAGAAAV-----GGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVL  206 (289)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHH-----hCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHH
Confidence            599999999999999999998888532     121   668888999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHh
Q 046670           81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMF  150 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~f  150 (153)
                      +|+|++.+++.... .++.....++....   ........++...+..+++|...+|.+++++...++..
T Consensus       207 ~G~~~a~~l~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (289)
T COG0382         207 FGIKKALALALLLL-LASALLVLLGLLAG---LLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDV  272 (289)
T ss_pred             hCchhHHHHHHHHH-HHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            99999999998887 45555554554432   12257888888889999999999998888777776654

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.58  E-value=5.1e-14  Score=116.81  Aligned_cols=101  Identities=24%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      .||.|.+..+++..+.|....++-+++.+.       .++...+....++.+..+..+++||+||+||||+.|++|+|++
T Consensus       128 lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~  200 (285)
T PRK12872        128 LKRIPLFKNLVVSLLWALSPLILGVYYYQL-------TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIV  200 (285)
T ss_pred             HhhhhhHhhHHHHHHHHHHHHHHHHHhccc-------ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchh
Confidence            388999999999999998877765544221       2456666777888888999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670           81 LGKESVLWLCVYVLVIAYGAAVIVGLTS  108 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~  108 (153)
                      +|+|++.+++..+....|+..+......
T Consensus       201 lG~~~t~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T PRK12872        201 LGKERTLKFLLILNLLFLILLILGVYTG  228 (285)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998888887655443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.42  E-value=5e-12  Score=107.43  Aligned_cols=134  Identities=23%  Similarity=0.315  Sum_probs=95.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH-HHHHHHHHHHHHHHHccCCCchhhhhcCCccchh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMF-AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSV   79 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f-~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i   79 (153)
                      +||+..+..+    +.|+..+++...+... +-|..   ++..+. +.....+-+.+-..+.+.+|+|+||+.|++|+|+
T Consensus       133 ~KR~t~~~~~----~lg~~~~~~~l~g~~a-v~g~~---~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v  204 (289)
T PLN02809        133 MKRFTFWPQA----FLGLTFNWGALLGWAA-VKGSL---DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTAL  204 (289)
T ss_pred             HHhcCcchHH----HHHHHHHHHHHHHHHH-HhCCC---ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccch
Confidence            4788776664    5788888988877654 34432   222221 2222222255566788889999999999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHH
Q 046670           80 ILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSF  147 (153)
Q Consensus        80 ~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sf  147 (153)
                      ++|+|+..+++. +...+|+....+|....   .+...+ .+|++.+..+++|.+.+|++|++++.+.
T Consensus       205 ~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~---~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~  267 (289)
T PLN02809        205 RFGDDTKLWLTG-FGAASIGGLALSGYNAG---LGWPYY-AGLAAAAGHLAWQIQTVDLSSRADCNRK  267 (289)
T ss_pred             hhcHHHHHHHHH-HHHHHHHHHHHHHHHhc---CcHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            999998888875 56667777766776543   233444 5899999999999999999999877554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.41  E-value=7.5e-12  Score=104.68  Aligned_cols=97  Identities=14%  Similarity=0.188  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 046670           46 AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSML  125 (153)
Q Consensus        46 ~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il  125 (153)
                      +.....+......++||.||+|||++.|++|+|+++|+|++.++......+.++..+..+.... .   ......+..+.
T Consensus       163 l~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~-~---g~~y~~~~~~~  238 (282)
T TIGR01475       163 LGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVG-N---GYIALLALILI  238 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhh-C---cHHHHHHHHHH
Confidence            3344455566778899999999999999999999999999999988888888877777666543 2   34445566666


Q ss_pred             HHHHHHHHhhccCCChhhHHH
Q 046670          126 ATLLWHQAQTVDLSSKASTLS  146 (153)
Q Consensus       126 ~~~Lw~r~~~vdl~sk~si~s  146 (153)
                      ...++++.+.+|.+|+++..+
T Consensus       239 ~~~l~~~~~~~~~~~~~~~~~  259 (282)
T TIGR01475       239 GLILAYEHYIVDPGDQSKIQR  259 (282)
T ss_pred             HHHHHHHHHHcCCCCHHHHHH
Confidence            777888999999998887765

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.41  E-value=9.9e-12  Score=103.53  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=84.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      .||+|.+...++....|....+|..      +.+...  +.+.+.+..+..+..+..+++||+||+|||++.|++|+|++
T Consensus       125 lK~~~~~g~~~vg~~~g~~~~~g~~------~~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~  196 (276)
T PRK12882        125 LKGTPGLGNASVAYLTGSTFLFGGA------AVGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPIL  196 (276)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHH------Hhcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHH
Confidence            3888988888887777776555642      123211  12222233333445678899999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHH
Q 046670           81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYM  149 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~  149 (153)
                      +|+|++.+++........+.... +...  ...+...+...-...+..++...+.+|.+++++..+++.
T Consensus       197 ~G~~~t~~~~~~~~~~~~~~~~~-~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~  262 (276)
T PRK12882        197 IGVRKALYVAAAFLLVAVAASPL-PYLL--STFGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLK  262 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99999999877666544433322 1110  111222222222222444555667777777766655443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.39  E-value=6.5e-12  Score=106.83  Aligned_cols=67  Identities=21%  Similarity=0.243  Sum_probs=60.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVG  105 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g  105 (153)
                      ++++.+.....+.+++.+++++||+||+||||+.|.||+|+++|+|++.+++..+..++++..+..+
T Consensus       158 ~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        158 FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778888888999999999999999999999999999999999999999999998888777444

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.39  E-value=3.5e-12  Score=110.06  Aligned_cols=92  Identities=17%  Similarity=0.130  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 046670           49 IKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATL  128 (153)
Q Consensus        49 f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~  128 (153)
                      +.....++++++||++|+|||++.|.+|+|+++|++++.++...+..+.|+..++..+... ..+...+.+-+-.+-+..
T Consensus       187 ~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~-l~~~~~~~~~s~~~~l~~  265 (307)
T PRK13591        187 FFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGV-IAFEPIILLYSFVCGLIC  265 (307)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCchhhHHHHHHHHHH
Confidence            3334447888999999999999999999999999999999999999999888776665543 334455555555555667


Q ss_pred             HHHHHhhccCCCh
Q 046670          129 LWHQAQTVDLSSK  141 (153)
Q Consensus       129 Lw~r~~~vdl~sk  141 (153)
                      +|+-+++.|-+++
T Consensus       266 ~~~~~~~~~~~~~  278 (307)
T PRK13591        266 IQVYSSPFENEPS  278 (307)
T ss_pred             HHHHcCCcccCcH
Confidence            7777777766544

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.37  E-value=9.5e-12  Score=106.72  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=62.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      .|+.|++.++|...       +|.-.+....+.|.+.  +..+   .....+++.+.+++||+||+||||+.|+||+|++
T Consensus       141 lK~rp~l~~l~~~~-------~g~p~~~~~~~~g~~~--~~~~---l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~  208 (292)
T PRK13595        141 FKARPFLDGLSNAA-------YALPLALPALALGAPV--PWPP---LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATT  208 (292)
T ss_pred             hhcCcchhHHHHHH-------HHHHHHHHHHHcCCcc--hHHH---HHHHHHHHHHHHHHHhccChHhHHHcCCeechHH
Confidence            48889998888643       2223333333445432  2222   2344577799999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHH
Q 046670           81 LGKESVLWLCVYVLVIAY   98 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y   98 (153)
                      +|+|++.++|..+..++-
T Consensus       209 lG~r~a~~~a~~~~~~a~  226 (292)
T PRK13595        209 LGVRGTALYALAWFLLAG  226 (292)
T ss_pred             hCcHhHHHHHHHHHHHHH
Confidence            999999999987666443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.36  E-value=3.1e-11  Score=100.28  Aligned_cols=96  Identities=21%  Similarity=0.360  Sum_probs=72.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      .||+|.+..+++....|.....|-+      ..+.+   +.+.+.+..++.+.....++.+|++|+|||++.|++|+|++
T Consensus       124 lK~~~~~~~~~~~~~~~~~~~~g~~------~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~  194 (279)
T PRK12884        124 LKEYGLIGNLYVAFLTGMTFIFGGI------AVGEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAIL  194 (279)
T ss_pred             hccccchhHHHHHHHHHHHHHHHHH------HhCCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechH
Confidence            3888888888877777765544432      12222   22555566667777788899999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHH
Q 046670           81 LGKESVLWLCVYVLVIAYGAAVIVG  105 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~ai~~g  105 (153)
                      +|+|++.+++..+....++..++..
T Consensus       195 ~G~~~~~~~~~~~~~~~~~~~~~~~  219 (279)
T PRK12884        195 YGEKIAGRIAAALFILAVLLSPLPY  219 (279)
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888777776555433

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.34  E-value=2.1e-11  Score=104.26  Aligned_cols=140  Identities=18%  Similarity=0.183  Sum_probs=94.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----cccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCcc
Q 046670            2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRP-----IAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRT   76 (153)
Q Consensus         2 KR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~-----~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~T   76 (153)
                      ||+..+.-+.+-...|..+..|...     +.|..     ..++.+-+++.....+.+.+.+++||.||+|||++.|++|
T Consensus       138 KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~S  212 (300)
T PRK13106        138 KRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHS  212 (300)
T ss_pred             hcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCc
Confidence            7777777777766777665555532     12311     1222333344445567778899999999999999999999


Q ss_pred             chhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHhhc
Q 046670           77 LSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIW  152 (153)
Q Consensus        77 l~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~fIW  152 (153)
                      +|+++| +++..++..+...........|.... .   ......+-.+....+.++.+.++.+ ++.-+.|.+..|
T Consensus       213 lpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~-l---g~~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~  282 (300)
T PRK13106        213 FAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYG-L---GPIAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIY  282 (300)
T ss_pred             cHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhC-C---cHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccH
Confidence            999999 88888888777766666666665443 1   2333344455667777888888877 666677765443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.34  E-value=2.9e-11  Score=96.73  Aligned_cols=79  Identities=29%  Similarity=0.440  Sum_probs=67.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhh
Q 046670            2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVIL   81 (153)
Q Consensus         2 KR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~l   81 (153)
                      ||+|.+..+++..+++...-+|.+.      .+.  ..+++.+....+..++.+.+...+|++|+|||++.|.+|+|+++
T Consensus       115 k~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~  186 (257)
T PF01040_consen  115 KRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLL  186 (257)
T ss_pred             cceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHH
Confidence            8999989999999999887777764      111  22677777777878888889999999999999999999999999


Q ss_pred             cHHHHHH
Q 046670           82 GKESVLW   88 (153)
Q Consensus        82 G~~~~~~   88 (153)
                      |++++..
T Consensus       187 G~~~~~~  193 (257)
T PF01040_consen  187 GEKKARY  193 (257)
T ss_pred             HHHHHHH
Confidence            9999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.34  E-value=3.3e-11  Score=104.45  Aligned_cols=70  Identities=13%  Similarity=0.415  Sum_probs=59.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS  108 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~  108 (153)
                      ++.+.+.+.++..+.+.+..++||+||+|||++.|+||+|+++|+|++.+++.....+..+..+..+...
T Consensus       178 ~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~  247 (331)
T PRK12392        178 IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSW  247 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566667777888889999999999999999999999999999999999999888766666666566554

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.32  E-value=6.6e-11  Score=98.88  Aligned_cols=90  Identities=18%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670            1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI   80 (153)
Q Consensus         1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~   80 (153)
                      +||.+.+...++..+.|...-.|-+. .+.         +.+.+++..+..+.+..+++.||.||+|||++.|++|+|++
T Consensus       124 lKr~~~~~~~~vg~~~G~~~~~g~~~-~~~---------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~  193 (279)
T PRK09573        124 LKKTGLIGNLIVAYLTGLSFIFGGLA-VFN---------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIK  193 (279)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHH-Hcc---------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHH
Confidence            48888888888888888876666532 121         12233344455566778999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHH
Q 046670           81 LGKESVLWLCVYVLVIAYGA  100 (153)
Q Consensus        81 lG~~~~~~i~~~ll~~~y~~  100 (153)
                      +|+|++.+++..........
T Consensus       194 ~G~~~a~~~~~~~~~~~~~~  213 (279)
T PRK09573        194 YGIKKSWYIAKILLILAIVL  213 (279)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            99999999876655544333

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.23  E-value=2.8e-10  Score=96.98  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Q 046670           43 LMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISH  122 (153)
Q Consensus        43 v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H  122 (153)
                      .+.+.....+-..+-++++|.||+|+|++.|++|+|+++|+++..+++..+..++....++.|....     ......+-
T Consensus       161 ~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-----~~~y~~~~  235 (286)
T PRK12895        161 IYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-----TLWYLAAL  235 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHH
Confidence            3445555666777788999999999999999999999999999988876666665555555554432     34445666


Q ss_pred             HHHHHHHHHHHhhccCCChhhH-HHHH
Q 046670          123 SMLATLLWHQAQTVDLSSKAST-LSFY  148 (153)
Q Consensus       123 ~il~~~Lw~r~~~vdl~sk~si-~sfY  148 (153)
                      .+.+..+.+|.+.+|.+|++++ .+|+
T Consensus       236 ~~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        236 IIIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            6678888899999999998887 5543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.23  E-value=3e-10  Score=95.07  Aligned_cols=70  Identities=24%  Similarity=0.313  Sum_probs=63.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS  108 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~  108 (153)
                      ++.+.++......++...+.+.||++|+||||+.|.+|+|+++|+|++.++...+..++|+..+...+..
T Consensus       166 ~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        166 VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5567788888899999999999999999999999999999999999999999999999999888776654

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.23  E-value=3e-10  Score=94.97  Aligned_cols=66  Identities=21%  Similarity=0.323  Sum_probs=56.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIV  104 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~  104 (153)
                      ++...++...-+++++..+..+||++|+||||+.|.+|+|+++|+|++.+++..++.+.|+..+..
T Consensus       159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~  224 (283)
T TIGR01476       159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGL  224 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666677788899999999999999999999999999999999999999888888766643

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.20  E-value=6.2e-10  Score=94.86  Aligned_cols=66  Identities=24%  Similarity=0.478  Sum_probs=56.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHH
Q 046670           38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVI  103 (153)
Q Consensus        38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~  103 (153)
                      .++...+.....+.+.+.++++.||++|+|||++.|.||+|+++|+|++.+++..++...|+..+.
T Consensus       180 ~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~  245 (306)
T TIGR02056       180 ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA  245 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777888999999999999999999999999999999999999999887776655443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.19  E-value=7.4e-10  Score=92.97  Aligned_cols=104  Identities=9%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVT  118 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~  118 (153)
                      ++.+.+++.....+-......+++++|+|+|++.|++|+|+++|+|++.+++.......|+..++.-+...    .....
T Consensus       163 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~y  238 (285)
T PRK12847        163 LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSL----HNIFY  238 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcC----cHHHH
Confidence            44555555556667777778899999999999999999999999999999888776666655443222211    12222


Q ss_pred             HHHHHHHHHHHHHHHhhccCCChhhHHHH
Q 046670          119 IISHSMLATLLWHQAQTVDLSSKASTLSF  147 (153)
Q Consensus       119 ~~~H~il~~~Lw~r~~~vdl~sk~si~sf  147 (153)
                       .++++.+..++++...+|.+++++..+.
T Consensus       239 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~  266 (285)
T PRK12847        239 -LAILAAAGIFYYQYKLLDFDNPANCMYA  266 (285)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence             2455555677888889998887655544

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.19  E-value=5.7e-10  Score=98.33  Aligned_cols=65  Identities=23%  Similarity=0.466  Sum_probs=55.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670           38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAV  102 (153)
Q Consensus        38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai  102 (153)
                      .++...+.+.+++.+.+.+++++||++|+|||++.|++|+|+++|+|++.+++..++.+.++..+
T Consensus       249 ~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        249 TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence            35566667777888899999999999999999999999999999999999999876666655433

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.14  E-value=7.3e-10  Score=94.74  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670           38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAV  102 (153)
Q Consensus        38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai  102 (153)
                      .++...++...+.++.+..+..+||++|+||||+.|++|+|+++|+|++.+++..++.+.|+..+
T Consensus       186 ~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~  250 (314)
T PRK07566        186 LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI  250 (314)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence            34556666677777788889999999999999999999999999999999999888888877654

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.11  E-value=2.5e-09  Score=90.65  Aligned_cols=104  Identities=20%  Similarity=0.264  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Q 046670           45 FAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSM  124 (153)
Q Consensus        45 f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~i  124 (153)
                      ....-..+....+-+.++++|+|+||+.|.+|+|+++|+|++ ++-..+...+|+..+...+... ..+.......++-.
T Consensus       175 ~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~ll~lp~  252 (296)
T PRK05951        175 LAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAIL-TPLISLWALLSLLV  252 (296)
T ss_pred             HHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHH
Confidence            333344455566677999999999999999999999999999 5555556667776665555443 22334556666666


Q ss_pred             HHHHHHHHHhhccCCChhhHHHHHHh
Q 046670          125 LATLLWHQAQTVDLSSKASTLSFYMF  150 (153)
Q Consensus       125 l~~~Lw~r~~~vdl~sk~si~sfY~f  150 (153)
                      ....+.++.+..|.++.+...+.++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        253 AYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHhhCcccccHHHHHHHHH
Confidence            66666667777777777777776653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.10  E-value=2.2e-09  Score=90.95  Aligned_cols=105  Identities=15%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Q 046670           40 TRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTI  119 (153)
Q Consensus        40 ~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~  119 (153)
                      +.+.+++..-..+...+..+++|.+|+|+|++.|++|+|+++|+|++.+++..+..+.++.....|.... ..   ....
T Consensus       158 ~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~-~~---~~y~  233 (284)
T PRK12888        158 SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG-FG---ALWW  233 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC-Cc---HHHH
Confidence            3344445555556677888999999999999999999999999999998777776666666666665543 21   2222


Q ss_pred             HHHHHHHHHHHHHHhhccCCChhhHH-HHH
Q 046670          120 ISHSMLATLLWHQAQTVDLSSKASTL-SFY  148 (153)
Q Consensus       120 ~~H~il~~~Lw~r~~~vdl~sk~si~-sfY  148 (153)
                      .+-.+.+..+.+|.+.+|.+|++.+. .|+
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        234 IGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            34446677788899999999888764 643

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.07  E-value=3.6e-09  Score=88.25  Aligned_cols=83  Identities=23%  Similarity=0.336  Sum_probs=54.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhh
Q 046670            2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVIL   81 (153)
Q Consensus         2 KR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~l   81 (153)
                      ||.+.+....+..+-|...-.|.+   +  + +   .++...+. ..+..+..+.+++.||++|+|||++.|++|+|+++
T Consensus       125 k~~~~lg~~~vg~~~g~~~~~g~~---a--~-~---~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~  194 (277)
T PRK12883        125 KPLPFIGNVVVALLTGATPIYGAI---A--V-G---RIGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIII  194 (277)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHH---H--h-c---cccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHh
Confidence            666666666666666654433332   1  1 1   11222221 23344555688899999999999999999999999


Q ss_pred             cHHHHHHHHHHHH
Q 046670           82 GKESVLWLCVYVL   94 (153)
Q Consensus        82 G~~~~~~i~~~ll   94 (153)
                      |+|++.+++....
T Consensus       195 G~~~a~~~~~~~~  207 (277)
T PRK12883        195 GKKRAAYIGAIFG  207 (277)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999988765543

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.01  E-value=1.4e-08  Score=85.51  Aligned_cols=105  Identities=17%  Similarity=0.306  Sum_probs=66.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVT  118 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~  118 (153)
                      ++.+.+.+.....+.+.+.+.+++++|+|+|++.|++|+|+++|+|+..+.+.......++.. +.+....   .+ ...
T Consensus       158 ~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~y  232 (281)
T TIGR01474       158 LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLA-LAGLIAG---LG-PVY  232 (281)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHH-HHHHHhC---Cc-HHH
Confidence            344444445556666778888999999999999999999999999987655444443333332 2333221   12 222


Q ss_pred             HHHHHHHHHHHHHHHhhccCCChhhHHHHH
Q 046670          119 IISHSMLATLLWHQAQTVDLSSKASTLSFY  148 (153)
Q Consensus       119 ~~~H~il~~~Lw~r~~~vdl~sk~si~sfY  148 (153)
                      ..+-.+.+..+.++...+|.+++++..+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F  262 (281)
T TIGR01474       233 YLGLAAAALLLIRQIATLDIRDPENCLKLF  262 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            233334456666667777777776655554

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.98  E-value=4.9e-09  Score=88.89  Aligned_cols=104  Identities=11%  Similarity=0.120  Sum_probs=67.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Q 046670           40 TRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTI  119 (153)
Q Consensus        40 ~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~  119 (153)
                      +.+.+++.....+...+.+++++.+|+|+|++.|++|+|+++|+|+..+++.......+ .....|.... .  +. ...
T Consensus       165 ~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~-~l~~~~~~~~-~--~~-~y~  239 (290)
T PRK12870        165 DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVG-FLAILGVLLE-L--HL-PFW  239 (290)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHH-HHHHHHHHhC-C--cH-HHH
Confidence            44555566666777888888999999999999999999999999999887774332222 2223343322 1  11 222


Q ss_pred             HHHHHHHHHHHHHHhhc--cCCChhhHHHHH
Q 046670          120 ISHSMLATLLWHQAQTV--DLSSKASTLSFY  148 (153)
Q Consensus       120 ~~H~il~~~Lw~r~~~v--dl~sk~si~sfY  148 (153)
                      .+-.+....+.++...+  |.+++++..+|+
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F  270 (290)
T PRK12870        240 IGLAIAAVLWARQYRRLRQANLPPLAYGQLF  270 (290)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence            23334455666777777  877776554443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=98.98  E-value=2.7e-08  Score=85.74  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-
Q 046670           47 VAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSML-  125 (153)
Q Consensus        47 t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il-  125 (153)
                      +....+...+-.++++.+|+||||+.|++|+|+++|.+++..++..+..+..+..++.|.... ..  ......+=.+. 
T Consensus       178 ~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~-l~--~~~y~~~~~~~~  254 (300)
T PRK12876        178 GISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVS-NK--KIFYLCSLVPLT  254 (300)
T ss_pred             HHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhh-cc--HHHHHHHHHHHH
Confidence            333444445778899999999999999999999999999877777666666555555565543 22  12233333222 


Q ss_pred             -HHHHHHHHhhccCCChhhHHHHHH
Q 046670          126 -ATLLWHQAQTVDLSSKASTLSFYM  149 (153)
Q Consensus       126 -~~~Lw~r~~~vdl~sk~si~sfY~  149 (153)
                       ...+.++.+.+|.++++.-..|++
T Consensus       255 ~~l~~~~~~~~~~~~~~~~~~~~F~  279 (300)
T PRK12876        255 VILKTIKHYSLIDKKKSTLEQKFFL  279 (300)
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHH
Confidence             222355656666665555555443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=98.95  E-value=2e-08  Score=85.36  Aligned_cols=92  Identities=14%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Q 046670           51 CCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLW  130 (153)
Q Consensus        51 ~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw  130 (153)
                      .+-....+++++++|.|+|++.|++|+|+++|++++.+++.......+....+.+.... .   ......+-.+....+.
T Consensus       172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~y~~~~~~~~~~~l  247 (291)
T PRK12886        172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAG-L---GPWFLAGLAVTGILLL  247 (291)
T ss_pred             HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHHHH
Confidence            33355666789999999999999999999999999999887666666665555554332 1   1223333334444444


Q ss_pred             HHHhhccCCCh-hhHHH
Q 046670          131 HQAQTVDLSSK-ASTLS  146 (153)
Q Consensus       131 ~r~~~vdl~sk-~si~s  146 (153)
                      ++.+.++.+|+ ++-.+
T Consensus       248 ~~~~~~~~~~~~~~~~~  264 (291)
T PRK12886        248 YEHWLLRGGDLTRLDAA  264 (291)
T ss_pred             HHHHHhCCCChhHHHHH
Confidence            67777877773 34444

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=98.89  E-value=1.2e-08  Score=86.62  Aligned_cols=65  Identities=26%  Similarity=0.388  Sum_probs=50.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVG  105 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g  105 (153)
                      +|+..++...  .+.+.++.+++|++|+|+|++.|+||+|+++|+|++.+++..+...+-...+.++
T Consensus       165 ~~~~~l~~a~--~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        165 LPPLLAVAGG--WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             CcHHHHHHHH--HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4555554444  4778888999999999999999999999999999999887777665544444443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=98.85  E-value=7.4e-08  Score=81.03  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=57.8

Q ss_pred             HHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Q 046670           54 CFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQA  133 (153)
Q Consensus        54 ~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~  133 (153)
                      ........+++|.|+|++.|++|+|+++|.|++.+++.......+ .....+.... .   ...+..+-.+....+.++.
T Consensus       175 ~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~-~---~~~y~~~~~~~~~~~~~~~  249 (282)
T PRK12848        175 TVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLA-LLAWAGWLLG-L---GWAYYWGLLVAAALFVYQQ  249 (282)
T ss_pred             HHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHH-HHHHHHHHhc-C---cHHHHHHHHHHHHHHHHHH
Confidence            334444566889999999999999999999998887644333322 2223333221 1   2233344445566677788


Q ss_pred             hhccCCChhhHH-HHHH
Q 046670          134 QTVDLSSKASTL-SFYM  149 (153)
Q Consensus       134 ~~vdl~sk~si~-sfY~  149 (153)
                      +.+|.+++++.. .|++
T Consensus       250 ~~~~~~~~~~~~~~F~~  266 (282)
T PRK12848        250 KLIRDREREACFKAFLN  266 (282)
T ss_pred             HHcCCCCHHHHHHHHHh
Confidence            899988877553 4443

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=98.84  E-value=3.2e-08  Score=84.49  Aligned_cols=99  Identities=14%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 046670           41 RTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII  120 (153)
Q Consensus        41 ~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~  120 (153)
                      ...+....+..+-+...+.+||++|+|||++.|++|+|+++|++++.++...+..+.++..+  +...   ..+......
T Consensus       175 ~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~---~~g~~~~~~  249 (297)
T PRK12871        175 MTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR---ELGPIALYG  249 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH---HhhHHHHHH
Confidence            33444445555667888889999999999999999999999999898765544444443333  2222   122222222


Q ss_pred             HHHHHHHHHHHHHhhccCCChhhH
Q 046670          121 SHSMLATLLWHQAQTVDLSSKAST  144 (153)
Q Consensus       121 ~H~il~~~Lw~r~~~vdl~sk~si  144 (153)
                      .-.+.+..+.+|.+..+.++|++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~  273 (297)
T PRK12871        250 FLAGFVLLAGANLYLWKEKSQDAG  273 (297)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHH
Confidence            224445566777777777777754

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=98.82  E-value=6.5e-08  Score=82.25  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Q 046670           43 LMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISH  122 (153)
Q Consensus        43 v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H  122 (153)
                      .+++...+.+-+.+..++++++|+|+|++.|++|+|+++|++++.+++........+..+..+.... .   ......+-
T Consensus       169 ~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~  244 (291)
T PRK12874        169 SVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAH-L---GLFAYLGV  244 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhc-c---hHHHHHHH
Confidence            3344444556677778899999999999999999999999999988765444433333333333222 1   12233344


Q ss_pred             HHHHHHHHHHHhhccCCChhhHHHH
Q 046670          123 SMLATLLWHQAQTVDLSSKASTLSF  147 (153)
Q Consensus       123 ~il~~~Lw~r~~~vdl~sk~si~sf  147 (153)
                      .+.+..++++.+.++.++++.-..|
T Consensus       245 ~~~~~~l~~~~~~~~~~~~~~~~~f  269 (291)
T PRK12874        245 IVSALILLYEHYLVRKDFKKIDKAF  269 (291)
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4456667777777776666555554

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.80  E-value=8.2e-09  Score=89.11  Aligned_cols=95  Identities=14%  Similarity=0.108  Sum_probs=63.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHH--HHH-HHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccch
Q 046670            2 KRSSFLTTLYTVLERGLLLQFA--YFI-HIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLS   78 (153)
Q Consensus         2 KR~p~~Aa~cI~~vRg~ivnlg--~f~-h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~   78 (153)
                      ||.|+...+.+...-|..+-.|  +|. -+.....|.|.. .-..+.+.....+.+.+.|+.||+|| |||+++ .+|+|
T Consensus       134 K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~-~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlp  210 (299)
T PRK13592        134 KRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLL-SLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYS  210 (299)
T ss_pred             cccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-Ceeec
Confidence            6666666666666666554333  211 111222343332 12224556788899999999999999 899975 99999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHH
Q 046670           79 VILGKESVLWLCVYVLVIAYG   99 (153)
Q Consensus        79 i~lG~~~~~~i~~~ll~~~y~   99 (153)
                      +++|+|++.+++..+..+..+
T Consensus       211 i~~G~kkA~~ia~~l~ii~v~  231 (299)
T PRK13592        211 KLFGYKKATRFIEVVTLLDIL  231 (299)
T ss_pred             hhccchhHHHHHHHHHHHHHH
Confidence            999999999998877664433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=98.79  E-value=9e-08  Score=81.36  Aligned_cols=92  Identities=17%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHH
Q 046670            9 TLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLW   88 (153)
Q Consensus         9 a~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~   88 (153)
                      =++++...|.+.-+|-| ..|+      ..++.+.+....-+.+.+..+-..++++|+|.|++.|.||+|+++|+|++.+
T Consensus       136 E~~v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~  208 (285)
T TIGR02235       136 EPICWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAK  208 (285)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHH
Confidence            34445556655555543 2232      3567777777888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 046670           89 LCVYVLVIAYGAAVIVGLT  107 (153)
Q Consensus        89 i~~~ll~~~y~~ai~~g~~  107 (153)
                      +-..++..+|+..+..-..
T Consensus       209 l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       209 IVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999977655443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=98.74  E-value=1.3e-07  Score=81.35  Aligned_cols=61  Identities=20%  Similarity=0.135  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 046670           46 AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGL  106 (153)
Q Consensus        46 ~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~  106 (153)
                      ...=+.+....+.+.|+++|+|+||+.|.||+|+++|+|++.++-..+...+|+..+..-.
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~  254 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVL  254 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455566678899999999999999999999999999999999999999987664433

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=98.74  E-value=1.7e-07  Score=79.62  Aligned_cols=69  Identities=16%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 046670           38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGL  106 (153)
Q Consensus        38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~  106 (153)
                      .++...+....-..+.+..+...++++|+|+|++.|.+|+|+++|+|++.++-..++..+|+..+....
T Consensus       161 ~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~  229 (284)
T TIGR00751       161 RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML  229 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555667778888899999999999999999999999999999999999999987665544

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=98.74  E-value=1.6e-07  Score=80.79  Aligned_cols=93  Identities=18%  Similarity=0.089  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHH
Q 046670            9 TLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLW   88 (153)
Q Consensus         9 a~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~   88 (153)
                      -..++..-|.+.-+|-| +.|+      ..++...+....-+.+.+..+-..++++|+|.||+.|.||+|+++|+|++.+
T Consensus       149 E~~v~l~~G~l~v~g~~-yv~t------~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~  221 (304)
T PRK07419        149 EPLCFLAFGPLAVAAAL-YSQT------PSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQ  221 (304)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhc------CCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHH
Confidence            33444444555444443 2232      3456677777777888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 046670           89 LCVYVLVIAYGAAVIVGLTS  108 (153)
Q Consensus        89 i~~~ll~~~y~~ai~~g~~~  108 (153)
                      +-..+...+|+..+......
T Consensus       222 ly~~l~~~ay~~~i~~v~~g  241 (304)
T PRK07419        222 LLPWIVGLIYALELLPVLLG  241 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999877665543

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.73  E-value=1.9e-07  Score=80.25  Aligned_cols=96  Identities=13%  Similarity=0.225  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 046670           49 IKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATL  128 (153)
Q Consensus        49 f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~  128 (153)
                      ...+-..+-+.+++.+|+|+|++.|++|+|+++|.+++.++........++.. +.+.... ..+   ....+=..+...
T Consensus       200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~-l~~~~~~-~~~---~~~~~~~~~~~~  274 (314)
T PRK12878        200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMG-LAFWLAG-VPL---LALLGLLAAAAH  274 (314)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHH-HHHHHhc-CcH---HHHHHHHHHHHH
Confidence            34444556667889999999999999999999999999887754444333322 2332221 111   111222223334


Q ss_pred             HHHHHhhccCCChhhHHHHHH
Q 046670          129 LWHQAQTVDLSSKASTLSFYM  149 (153)
Q Consensus       129 Lw~r~~~vdl~sk~si~sfY~  149 (153)
                      +.++.+++|.+++++-.++++
T Consensus       275 l~~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        275 LAWQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHHHHcccCChHHHHHHHH
Confidence            667788888887776555543

>PLN02922 prenyltransferase

Probab=98.57  E-value=1.9e-06  Score=74.31  Aligned_cols=70  Identities=23%  Similarity=0.280  Sum_probs=61.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670           39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS  108 (153)
Q Consensus        39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~  108 (153)
                      ++..++...+=+.+.+..+-+.++++|+|.||+.|.||+|+++|+|++.++-..+...+|+..+...+..
T Consensus       186 ~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  255 (315)
T PLN02922        186 LTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK  255 (315)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566777777778888889999999999999999999999999999999999999999998887665554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.52  E-value=2.2e-06  Score=73.63  Aligned_cols=100  Identities=9%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Q 046670           48 AIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLAT  127 (153)
Q Consensus        48 ~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~  127 (153)
                      ..+.+-..+-..+++.+|.|+|++.|++|+|+++|.+ +..++..+..+..+....+|.... .   ......+=.+.+.
T Consensus       177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~-l---~~~y~~~~~~~~~  251 (294)
T PRK12873        177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQ-V---GFIFWPFWLIASI  251 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhC-C---cHHHHHHHHHHHH
Confidence            3344445556669999999999999999999999974 555555555555555555665543 2   1223334445566


Q ss_pred             HHHHHHhhccCCC---hhhHHHHHHhhc
Q 046670          128 LLWHQAQTVDLSS---KASTLSFYMFIW  152 (153)
Q Consensus       128 ~Lw~r~~~vdl~s---k~si~sfY~fIW  152 (153)
                      .+.++.+.+|.++   ++....|.+..|
T Consensus       252 ~l~~~~~~~~~~~~~~~~c~~~F~~n~~  279 (294)
T PRK12873        252 GMQRDILKLFPEKQSIKTIGNHFSNQVI  279 (294)
T ss_pred             HHHHHHHHhCcCcccHHHHHHHHHhccH
Confidence            7778899999887   445577776654

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=98.31  E-value=2.7e-05  Score=65.19  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             cCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCC-C
Q 046670           62 DIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLS-S  140 (153)
Q Consensus        62 Di~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~-s  140 (153)
                      ..+|.|.||+.|++|+|+++|.|++.+++............+.+....   .+....+.+=.+.+..++++.+.+|.+ +
T Consensus       179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~~~~~l~~~~~~~~~~~~  255 (280)
T TIGR01473       179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG---TGWLYLIVATLLGALFLYLAFKFYRDPTD  255 (280)
T ss_pred             HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            357888999999999999999999888766554443333333332211   112222222233345556666666655 4


Q ss_pred             hh-hHHHHHH
Q 046670          141 KA-STLSFYM  149 (153)
Q Consensus       141 k~-si~sfY~  149 (153)
                      ++ +-+.|+.
T Consensus       256 ~~~~~~~f~~  265 (280)
T TIGR01473       256 RKKARKLFKF  265 (280)
T ss_pred             HHHHHHHHHH
Confidence            43 4444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=98.30  E-value=2.8e-05  Score=65.50  Aligned_cols=35  Identities=11%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             cCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHH
Q 046670           62 DIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVI   96 (153)
Q Consensus        62 Di~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~   96 (153)
                      +.+|.|.|++.|++|+|+++|+|++.++......+
T Consensus       180 ~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~  214 (279)
T PRK12869        180 ALKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL  214 (279)
T ss_pred             HHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHH
Confidence            55688889999999999999999998876555443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=98.11  E-value=7.3e-05  Score=63.44  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=27.5

Q ss_pred             HccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHH
Q 046670           60 LKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAY   98 (153)
Q Consensus        60 ~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y   98 (153)
                      +||.||   |++.|++|+|+++|.|++.+++.....+..
T Consensus       189 ~~d~~D---~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~  224 (296)
T PRK04375        189 IFRKDD---YAAAGIPMLPVVKGIRVTKRQILLYTVLLV  224 (296)
T ss_pred             HHHHhh---HHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence            556555   799999999999999998886655544433

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=97.73  E-value=0.00086  Score=58.36  Aligned_cols=72  Identities=24%  Similarity=0.242  Sum_probs=60.0

Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046670           36 PIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLT  107 (153)
Q Consensus        36 ~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~  107 (153)
                      ...++.......+...+-+..+.+.+.+-|+|=|++.|-+|+|+|+|++++...=..++..+|+..++.-..
T Consensus       171 t~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~  242 (303)
T COG1575         171 TGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVIL  242 (303)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777888888888999999999999999999999999999999888888888777654333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=97.45  E-value=0.0068  Score=52.18  Aligned_cols=36  Identities=22%  Similarity=0.028  Sum_probs=29.2

Q ss_pred             HHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHH
Q 046670           56 VISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCV   91 (153)
Q Consensus        56 ~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~   91 (153)
                      .-...++++|.|+|++.|++|+|++.|+|++.+.+.
T Consensus       185 ~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        185 PHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence            333457788888889999999999999998887544

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=85.04  E-value=0.99  Score=39.15  Aligned_cols=50  Identities=32%  Similarity=0.444  Sum_probs=40.6

Q ss_pred             HccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 046670           60 LKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSS  109 (153)
Q Consensus        60 ~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~  109 (153)
                      -+.-.|.|.||+.||-|+++.+|+.....+-..++..-|..-.+.|+-.+
T Consensus       248 snntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~s  297 (359)
T KOG4581|consen  248 SNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCS  297 (359)
T ss_pred             cCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999988877777777777777666665543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=84.59  E-value=8  Score=33.09  Aligned_cols=49  Identities=14%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh---hcHHHHHHHHHHHHH
Q 046670           46 AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI---LGKESVLWLCVYVLV   95 (153)
Q Consensus        46 ~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~---lG~~~~~~i~~~ll~   95 (153)
                      ......++..+.+.++|.-|.|-|+..+ ++=|+.   +.++.+..++..++.
T Consensus        59 ~ll~~~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~~a~~~~~~l~~  110 (306)
T TIGR02056        59 MLLSGPCLTGYTQTINDFYDRDIDAINE-PYRPIPSGAISEPEVITQIVLLFI  110 (306)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence            3445566677778999999999998766 333433   456666655544443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00