Citrus Sinensis ID: 046821

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
ATLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY
cHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEccEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHEEEEccccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccEEcccccEEEEEEccEEEcccccccccccHHHHHHHHHHHccccEEEEEccHHHHHHccEEEEEcccccEEEEEEEccEEEccccccHHHHHHHHHHHHHHHHcccccccc
ccHHHHHHHccccccHHHccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEccEEEEHHHccEcccEHHHHcccEEEEEEEEEccEEccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHccccccHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEccccEEEEEEccEEEccHHHcccccHHHHHHHHHHHHccccEEEcccEccHHHHccEEEEEEcccEEEEEEEEccEEcccccccHHHHHHHHHHcHHHcccccccccc
ATLRSLCEDLDIPFQATMLrweagpkpidglwAKWWYESVHKstgftsareypmpfpmsLYDLLEQSLPFYNMLRRNVRKtssllksplpepdlpvpanknllawvgdeivprddakvsvFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRnvlpewkppvydnthgvnlvtattrrnspnnldskiHHNNLLNNILAKiegnnanagdaimldkdgyvsetnATNIFLVkkgrvltphadyclpgitRATVMELVVKENLVLEERRISlsefhtadevwttgtmgeitpvvkidgrivgdgkvgpVTQRIQKVYKKeteesgvpipsy
atlrslcedldipfQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLlksplpepdlpvpANKNLLAWVGDEIVPRDDAKVSVFDSivqggdgvweGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLpewkppvydntHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIflvkkgrvltpHADYCLPGITRATVMELVVKENLVLEERrislsefhtadevwttgtmgeitpvvkidgrivgdgkvgpvtQRIQkvykketeesgvpipsy
ATLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKihhnnllnnilAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATvmelvvkenlvleeRRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY
*****LCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNV*******************ANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATT**********KIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKV***************
***RSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKST*************MSLYDLLEQSLPFYNM*****************************LAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEES*******
ATLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYK*************
*TLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGV*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ATLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSLYDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9ASR4559 Branched-chain-amino-acid no no 0.991 0.640 0.693 1e-156
Q8W0Z7555 Branched-chain-amino-acid no no 0.988 0.643 0.692 1e-146
O29329290 Putative branched-chain-a yes no 0.711 0.886 0.386 3e-46
Q58414288 Putative branched-chain-a yes no 0.675 0.847 0.334 1e-33
O67733311 Probable branched-chain-a yes no 0.678 0.787 0.322 1e-31
O86428307 Branched-chain-amino-acid yes no 0.692 0.814 0.294 6e-31
O27481306 Putative branched-chain-a yes no 0.684 0.807 0.317 3e-28
P54694282 D-alanine aminotransferas yes no 0.673 0.861 0.322 2e-27
Q8NW24282 D-alanine aminotransferas yes no 0.684 0.875 0.318 1e-26
Q6GFV1282 D-alanine aminotransferas yes no 0.684 0.875 0.318 1e-26
>sp|Q9ASR4|BCAL2_ARATH Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1 Back     alignment and function desciption
 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/395 (69%), Positives = 307/395 (77%), Gaps = 37/395 (9%)

Query: 1   ATLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSL 60
           ATLRSLC+DL+IPFQA+ML+WEAGP P DGLWA WWYE++HKSTGF+S ++YP  FP+  
Sbjct: 158 ATLRSLCDDLEIPFQASMLKWEAGPIPEDGLWAPWWYETLHKSTGFSSPQKYPQTFPLMH 217

Query: 61  YDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSV 120
           YDLLEQ LP YN+LR +++  SSLL S LP P LPVP N  LLAWVGDEIVPR+ AKVSV
Sbjct: 218 YDLLEQCLPLYNILRCHMKHKSSLLSSTLPPPSLPVPENAKLLAWVGDEIVPREMAKVSV 277

Query: 121 FDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRT 180
           FDS+VQGGD VWEGLR+Y GKVFKLEEHLDRL    +      V   E    +K+AIFRT
Sbjct: 278 FDSVVQGGDSVWEGLRIYKGKVFKLEEHLDRLSDSAKALAFNNVPTRE---EIKEAIFRT 334

Query: 181 LIRN----------------------------------VLPEWKPPVYDNTHGVNLVTAT 206
           LI N                                  VL EWKPPVYDN  G+ LVTAT
Sbjct: 335 LITNGMFDNTHIRLSLTRGKKVTSGMSPAFNRYGCTLIVLAEWKPPVYDNDGGIVLVTAT 394

Query: 207 TRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGR 266
           TRRNSPNNLDSKIHHNNLLNNILAKIE NNAN  DAIMLDKDG+VSETNATNIF+VKK R
Sbjct: 395 TRRNSPNNLDSKIHHNNLLNNILAKIESNNANVDDAIMLDKDGFVSETNATNIFMVKKDR 454

Query: 267 VLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKI 326
           VLTPHADYCLPGITRATVMELVVKEN +LEERRISLSEFHTADEVWTTGTMGE++PVVKI
Sbjct: 455 VLTPHADYCLPGITRATVMELVVKENFILEERRISLSEFHTADEVWTTGTMGELSPVVKI 514

Query: 327 DGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY 361
           DGR++G+GKVGPVT+R+Q  YKK T+ SGVPIP+Y
Sbjct: 515 DGRVIGEGKVGPVTRRLQNAYKKLTDGSGVPIPTY 549

Arabidopsis thaliana (taxid: 3702)
>sp|Q8W0Z7|BCAL1_ARATH Branched-chain-amino-acid aminotransferase-like protein 1 OS=Arabidopsis thaliana GN=At3g05190 PE=2 SV=1 Back     alignment and function description
>sp|O29329|ILVE_ARCFU Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|Q58414|ILVE_METJA Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|O67733|ILVE_AQUAE Probable branched-chain-amino-acid aminotransferase OS=Aquifex aeolicus (strain VF5) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|O86428|ILVE_PSEAE Branched-chain-amino-acid aminotransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ilvE PE=1 SV=2 Back     alignment and function description
>sp|O27481|ILVE_METTH Putative branched-chain-amino-acid aminotransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ilvE PE=3 SV=2 Back     alignment and function description
>sp|P54694|DAAA_STAHA D-alanine aminotransferase OS=Staphylococcus haemolyticus GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q8NW24|DAAA_STAAW D-alanine aminotransferase OS=Staphylococcus aureus (strain MW2) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q6GFV1|DAAA_STAAR D-alanine aminotransferase OS=Staphylococcus aureus (strain MRSA252) GN=dat PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
356504062 906 PREDICTED: LOW QUALITY PROTEIN: amino ac 0.991 0.395 0.726 1e-165
224131446 562 predicted protein [Populus trichocarpa] 0.991 0.637 0.754 1e-158
356533600 626 PREDICTED: LOW QUALITY PROTEIN: branched 0.991 0.571 0.691 1e-157
357441579 568 Branched-chain amino acid aminotransfera 0.991 0.630 0.711 1e-156
296088294 975 unnamed protein product [Vitis vinifera] 0.988 0.366 0.703 1e-155
334187975 936 branched-chain-amino-acid aminotransfera 0.991 0.382 0.693 1e-155
359487776 960 PREDICTED: branched-chain-amino-acid ami 0.988 0.371 0.703 1e-155
388493112 550 unknown [Medicago truncatula] 0.983 0.645 0.698 1e-155
18421115 559 branched-chain-amino-acid aminotransfera 0.991 0.640 0.693 1e-154
255542556378 branched-chain amino acid aminotransfera 0.944 0.902 0.743 1e-153
>gi|356504062|ref|XP_003520818.1| PREDICTED: LOW QUALITY PROTEIN: amino acid aminotransferase [Glycine max] Back     alignment and taxonomy information
 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/395 (72%), Positives = 317/395 (80%), Gaps = 37/395 (9%)

Query: 1   ATLRSLCEDLDIPFQATMLRWEAGPKPIDGLWAKWWYESVHKSTGFTSAREYPMPFPMSL 60
           ATLRSLC DL+IPFQ+ ML+WEAGPKPIDGLWA WWY+SVHKSTGF   R+YP PFP SL
Sbjct: 512 ATLRSLCNDLEIPFQSAMLKWEAGPKPIDGLWAPWWYKSVHKSTGFEKPRKYPQPFPFSL 571

Query: 61  YDLLEQSLPFYNMLRRNVRKTSSLLKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSV 120
           YDLLEQSLP YNMLRR+V+K SSLL  PLP PDLPVPAN+ LLAWVGDEIV RD AKVSV
Sbjct: 572 YDLLEQSLPLYNMLRRHVKKKSSLLSPPLPNPDLPVPANEKLLAWVGDEIVTRDSAKVSV 631

Query: 121 FDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRT 180
           FDS+VQGGD VWEGLRVYNGK+FKLEEHLDRL    +      V   +    +K+AIFRT
Sbjct: 632 FDSVVQGGDSVWEGLRVYNGKIFKLEEHLDRLFDSAKALAFENVPTQD---EIKEAIFRT 688

Query: 181 LIRN----------------------------------VLPEWKPPVYDNTHGVNLVTAT 206
           LIRN                                  VL EWKPPVYDNT G+ LVTAT
Sbjct: 689 LIRNGMFDNSHIRLSLTRGKKVSSGMSPAFNLYGCTLIVLAEWKPPVYDNTRGIVLVTAT 748

Query: 207 TRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGR 266
           TRRNSPNNLDSKIHHNNLLNNILAKIEGNNA A DAIMLD+DGY+SETNATNIF+VKKGR
Sbjct: 749 TRRNSPNNLDSKIHHNNLLNNILAKIEGNNAKADDAIMLDQDGYLSETNATNIFVVKKGR 808

Query: 267 VLTPHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGTMGEITPVVKI 326
           VLTPHADYCLPGITRATVM+LVVKE L+LEERRISLSE HTADEVWTTGTMGE++PVVK+
Sbjct: 809 VLTPHADYCLPGITRATVMDLVVKEQLILEERRISLSEVHTADEVWTTGTMGELSPVVKV 868

Query: 327 DGRIVGDGKVGPVTQRIQKVYKKETEESGVPIPSY 361
           DGRI+G+G+VGPVT+R+Q  YKK TE+SGVPIP+Y
Sbjct: 869 DGRIIGNGEVGPVTRRLQAAYKKLTEQSGVPIPTY 903

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131446|ref|XP_002328541.1| predicted protein [Populus trichocarpa] gi|222838256|gb|EEE76621.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356533600|ref|XP_003535350.1| PREDICTED: LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357441579|ref|XP_003591067.1| Branched-chain amino acid aminotransferase-like protein [Medicago truncatula] gi|355480115|gb|AES61318.1| Branched-chain amino acid aminotransferase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|296088294|emb|CBI36739.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334187975|ref|NP_001190410.1| branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis thaliana] gi|332006301|gb|AED93684.1| branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359487776|ref|XP_002284915.2| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388493112|gb|AFK34622.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18421115|ref|NP_568496.1| branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis thaliana] gi|26391648|sp|Q9ASR4.1|BCAL2_ARATH RecName: Full=Branched-chain-amino-acid aminotransferase-like protein 2 gi|13605849|gb|AAK32910.1|AF367323_1 AT5g27410/F21A20_120 [Arabidopsis thaliana] gi|23308233|gb|AAN18086.1| At5g27410/F21A20_120 [Arabidopsis thaliana] gi|332006300|gb|AED93683.1| branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255542556|ref|XP_002512341.1| branched-chain amino acid aminotransferase, putative [Ricinus communis] gi|223548302|gb|EEF49793.1| branched-chain amino acid aminotransferase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2096289555 AT3G05190 [Arabidopsis thalian 0.498 0.324 0.725 4.2e-132
TAIR|locus:2146445559 AT5G27410 [Arabidopsis thalian 0.498 0.322 0.719 1.8e-131
TIGR_CMR|BA_1849299 BA_1849 "branched-chain amino 0.506 0.612 0.367 1.9e-37
UNIPROTKB|Q5LKT8319 Q5LKT8 "Branched-chain amino a 0.415 0.470 0.377 2.4e-37
TIGR_CMR|SPO_A0291319 SPO_A0291 "branched-chain amin 0.415 0.470 0.377 2.4e-37
TIGR_CMR|CHY_0515293 CHY_0515 "branched-chain amino 0.432 0.532 0.339 3.9e-35
TIGR_CMR|BA_1416298 BA_1416 "branched-chain amino 0.443 0.536 0.322 3.8e-33
TIGR_CMR|CJE_0318304 CJE_0318 "branched-chain amino 0.412 0.490 0.346 4.4e-25
UNIPROTKB|P54694282 dat "D-alanine aminotransferas 0.315 0.404 0.387 1.1e-21
TIGR_CMR|SPO_3604286 SPO_3604 "D-amino acid aminotr 0.346 0.437 0.338 6.2e-21
TAIR|locus:2096289 AT3G05190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 669 (240.6 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
 Identities = 132/182 (72%), Positives = 143/182 (78%)

Query:   180 TLIRNVLPEWKPPVYDNTHGVNLVTATTRRNSPNNLDSKXXXXXXXXXXXAKIEGNNANA 239
             TLI  VL EWKPPVYDN  G+ LVTATTRRNSPNNLDSK           AKIE NN NA
Sbjct:   373 TLI--VLAEWKPPVYDNEGGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIESNNTNA 430

Query:   240 GDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATXXXXXXXXXXXXXXRR 299
              DAIMLDKDGYVSETNATNIF+VKKG VLTPHADYCLPGITRAT              RR
Sbjct:   431 ADAIMLDKDGYVSETNATNIFMVKKGCVLTPHADYCLPGITRATVMELVVKENFILEERR 490

Query:   300 ISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIP 359
             ISLSEFHTA+EVWTTGTMGE++PVVKIDGR++GDGKVGPVT+ +Q  YKK TE+SGVPIP
Sbjct:   491 ISLSEFHTANEVWTTGTMGELSPVVKIDGRVIGDGKVGPVTRTLQNAYKKLTEDSGVPIP 550

Query:   360 SY 361
             +Y
Sbjct:   551 TY 552
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2146445 AT5G27410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1849 BA_1849 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LKT8 Q5LKT8 "Branched-chain amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0291 SPO_A0291 "branched-chain amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0515 CHY_0515 "branched-chain amino acid aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1416 BA_1416 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0318 CJE_0318 "branched-chain amino acid aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|P54694 dat "D-alanine aminotransferase" [Staphylococcus haemolyticus (taxid:1283)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3604 SPO_3604 "D-amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.6.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 1e-95
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 5e-79
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 5e-74
TIGR01122298 TIGR01122, ilvE_I, branched-chain amino acid amino 2e-60
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 2e-59
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 2e-57
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 4e-56
TIGR01121276 TIGR01121, D_amino_aminoT, D-amino acid aminotrans 4e-45
PRK07650283 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyas 2e-44
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 2e-42
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 3e-41
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 1e-37
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 5e-35
PRK07544292 PRK07544, PRK07544, branched-chain amino acid amin 5e-33
TIGR03461261 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase 4e-28
PRK06092268 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas 4e-26
PRK13356286 PRK13356, PRK13356, aminotransferase; Provisional 1e-25
PLN02845336 PLN02845, PLN02845, Branched-chain-amino-acid amin 4e-22
PRK12400290 PRK12400, PRK12400, D-amino acid aminotransferase; 1e-21
PRK13357356 PRK13357, PRK13357, branched-chain amino acid amin 3e-16
TIGR01123313 TIGR01123, ilvE_II, branched-chain amino acid amin 9e-15
PLN03117355 PLN03117, PLN03117, Branched-chain-amino-acid amin 2e-11
PRK07849292 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas 4e-11
PLN02782403 PLN02782, PLN02782, Branched-chain amino acid amin 9e-11
PLN02883384 PLN02883, PLN02883, Branched-chain amino acid amin 9e-09
PLN02259388 PLN02259, PLN02259, branched-chain-amino-acid amin 5e-08
PRK07101187 PRK07101, PRK07101, hypothetical protein; Provisio 7e-05
PRK07546209 PRK07546, PRK07546, hypothetical protein; Provisio 7e-04
PRK09266266 PRK09266, PRK09266, hypothetical protein; Provisio 0.002
PRK07849292 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas 0.003
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information 
 Score =  285 bits (731), Expect = 1e-95
 Identities = 112/277 (40%), Positives = 154/277 (55%), Gaps = 41/277 (14%)

Query: 105 WVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIV 164
           ++  E VPR++AKVSVFD     GDGV+E +RVYNGK F L+EHLDRL +  ++    I 
Sbjct: 1   YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIP 60

Query: 165 WYMELVIMVKQAIFRTLIRNVLPE------------------------------WKPPVY 194
           +  E    +K+ I   + +N   E                                 P+ 
Sbjct: 61  YTRE---ELKELIRELVAKNEGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLP 117

Query: 195 DNT---HGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYV 251
                  GV ++T    R      D K    NLLNN+LAK E   A A +AI+LD DG V
Sbjct: 118 PAELLEKGVRVITVPDIRW--LRCDIKSL--NLLNNVLAKQEAKEAGADEAILLDADGLV 173

Query: 252 SETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADE 310
           +E +++N+F+VK G ++TP  D   LPGITRATV+EL  +  + +EER  SL E +TADE
Sbjct: 174 TEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADE 233

Query: 311 VWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
           V+ T T  E+ PVV+IDGR +GDGK GPVT+R+++ Y
Sbjct: 234 VFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270

It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life. Length = 270
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase Back     alignment and domain information
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>gnl|CDD|235934 PRK07101, PRK07101, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
PRK13356286 aminotransferase; Provisional 100.0
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
PRK09266266 hypothetical protein; Provisional 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PRK07546209 hypothetical protein; Provisional 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
PRK07101187 hypothetical protein; Provisional 100.0
>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.1e-55  Score=419.34  Aligned_cols=255  Identities=41%  Similarity=0.658  Sum_probs=227.6

Q ss_pred             ceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCeecCHHhHHHHHHHHHHHcCCccccccchHHHHHHHHHHHH
Q 046821          102 LLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFRTL  181 (361)
Q Consensus       102 ~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~i~~~l  181 (361)
                      .++|+||++++.+++.|++.||||+|||||||||++++|++++|++|++||.+||+.|+++.   +++.+++.+.+.+++
T Consensus         4 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~---p~~~~~l~~~i~~~i   80 (299)
T PRK12479          4 QYIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYESAKSILLTI---PLTVDEMEEAVLQTL   80 (299)
T ss_pred             cEEEECCEEeEHHHCccccccchhheeeeEEEEEEEECCEecCHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHH
Confidence            45999999999999999999999999999999999999999999999999999999999984   346788999999888


Q ss_pred             HHc----------cCC-----CCCCC---------------CCC---CCCCeEEEEeccccCCCCCcCcccccccHHHHH
Q 046821          182 IRN----------VLP-----EWKPP---------------VYD---NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNI  228 (361)
Q Consensus       182 ~~~----------~~~-----~~~~p---------------~~~---~~~gi~l~~~~~~r~~~~~~~~~~Kt~n~l~~i  228 (361)
                      .++          +..     .+.++               .+.   ..+|+++.++..+|..+..+.+.+||.||+.++
T Consensus        81 ~~~~~~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~v  160 (299)
T PRK12479         81 QKNEYADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNV  160 (299)
T ss_pred             HHcCCCCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHH
Confidence            764          000     01110               000   146888888888887766666799999999999


Q ss_pred             HHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEecCHHhHhh
Q 046821          229 LAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHT  307 (361)
Q Consensus       229 ~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i~~~dL~~  307 (361)
                      +++++|+++|+||+||+|++|+|+|++++|||+++||+|+||+.+ |+|+||||+.|+++|+++|++|+|+.++++||.+
T Consensus       161 la~~ea~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~  240 (299)
T PRK12479        161 LVKIEAAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYV  240 (299)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHh
Confidence            999999999999999999999999999999999999999999985 7999999999999999999999999999999999


Q ss_pred             cceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhcCccCC
Q 046821          308 ADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEESGVPIP  359 (361)
Q Consensus       308 adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~  359 (361)
                      |||+|+|||++||+||.+||++.++++++||++++|+++|++.....+..++
T Consensus       241 adevfltnS~~gi~PV~~id~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~  292 (299)
T PRK12479        241 ADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGVRVP  292 (299)
T ss_pred             CCeeeeecCcccEEEEEEECCEEcCCCCcCHHHHHHHHHHHHHHhhcCCCch
Confidence            9999999999999999999999999888999999999999998887776544

>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3u0g_A328 Crystal Structure Of Branched-Chain Amino Acid Amin 2e-24
1wrv_A308 Crystal Structure Of T.Th.Hb8 Branched-Chain Amino 7e-23
1i1k_A309 Crystal Structure Of Eschelichia Coli Branched-chai 7e-21
1a3g_A308 Branched-chain Amino Acid Aminotransferase From Esc 7e-21
1daa_A282 Crystallographic Structure Of D-Amino Acid Aminotra 3e-17
3lqs_A280 Complex Structure Of D-Amino Acid Aminotransferase 3e-17
3daa_A277 Crystallographic Structure Of D-Amino Acid Aminotra 7e-17
1g2w_A282 E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D 1e-16
1a0g_A282 L201a Mutant Of D-Amino Acid Aminotransferase Compl 1e-16
5daa_A277 E177k Mutant Of D-Amino Acid Aminotransferase Compl 2e-16
2y4r_A292 Crystal Structure Of 4-Amino-4-Deoxychorismate Lyas 5e-10
3csw_A285 Crystal Structure Of A Putative Branched-Chain Amin 3e-08
1et0_A269 Crystal Structure Of Aminodeoxychorismate Lyase Fro 6e-06
3lul_A272 Crystal Structure Of Putative 4-Amino-4-Deoxychoris 3e-05
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 130/299 (43%), Gaps = 36/299 (12%)
Query: 85  LKSPLPEPDLPVPANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVY-----N 139
           L++    P     A+++   W+  +++   DAK+ V    +  G GV+EG+R Y      
Sbjct: 12  LEAQTQGPGSMSMADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGG 71
Query: 140 GKVFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQAIFR-------------------- 179
             +F+L+EH  RL+   + F   + +  E +   ++ + R                    
Sbjct: 72  TAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKLESCYLRPIIWIGSEKL 131
Query: 180 ------TLIRNVLPEWKPPVYDN----THGVNLVTATTRRNSPN-NLDSKXXXXXXXXXX 228
                   I   +  W    Y        G+ + T++  R+  N ++             
Sbjct: 132 GVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSI 191
Query: 229 XAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATXXXXX 288
            A  E       +A++LD DGYVSE +  N FLV +G++ TP    CL GITR T     
Sbjct: 192 LANQEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLASCLDGITRDTVITLA 251
Query: 289 XXXXXXXXXRRISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVY 347
                    +RI+  E +TADE + TGT  E+TP+ ++D R +G G  GP+T+++Q  +
Sbjct: 252 KEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAF 310
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308 Back     alignment and structure
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309 Back     alignment and structure
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308 Back     alignment and structure
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Complexed With Pyridoxal-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And 4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta) Length = 280 Back     alignment and structure
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Inactivated By Pyridoxyl-D-Alanine Length = 277 Back     alignment and structure
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino Acid Aminotransferase Length = 282 Back     alignment and structure
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 277 Back     alignment and structure
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From Pseudomonas Aeruginosa Length = 292 Back     alignment and structure
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid Aminotransferase (Tm0831) From Thermotoga Maritima At 2.15 A Resolution Length = 285 Back     alignment and structure
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From Escherichia Coli Length = 269 Back     alignment and structure
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 At 1.78 A Resolution Length = 272 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 2e-98
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 2e-92
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 2e-89
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 3e-87
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 1e-86
3u0g_A328 Putative branched-chain amino acid aminotransfera; 5e-76
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 6e-76
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 1e-73
1iye_A309 Branched-chain amino acid aminotransferase; hexame 2e-73
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 8e-73
3qqm_A221 MLR3007 protein; structural genomics, joint center 3e-50
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 2e-26
3dth_A372 Branched-chain amino acid aminotransferase; open t 6e-15
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 2e-11
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
 Score =  292 bits (749), Expect = 2e-98
 Identities = 60/279 (21%), Positives = 111/279 (39%), Gaps = 33/279 (11%)

Query: 98  ANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRLVKGKQ 157
            + ++L W   +    D+  +            V+E LR Y+   F   +H  RL +   
Sbjct: 9   HHHHVLIWWRGKFRRADEISLDFSLFEKSLQGAVYETLRTYSRAPFAAYKHYTRLKRSAD 68

Query: 158 KFGKVIVWYMELVIMVKQ--AIFRTLIRNVLPE--------------------WKPPVYD 195
            F       + L +   +   + +        E                       P  +
Sbjct: 69  FFN------LPLSLSFDEFTKVLKAGADEFKQEVRIKVYLFPDSGEVLFVFSPLNIPDLE 122

Query: 196 NTHGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETN 255
              GV +  +  RR    +    +      + +LA+ E    +  D I+L  +G V E +
Sbjct: 123 T--GVEVKISNVRRIPDLSTPPALKITGRTDIVLARREI--VDCYDVILLGLNGQVCEGS 178

Query: 256 ATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTT 314
            +N+FLVK+G+++TP  D   L GITR  V++L     + +EER + + E   ADE++ T
Sbjct: 179 FSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLT 238

Query: 315 GTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEE 353
            T   + PV +++     + + GPVT  + + ++     
Sbjct: 239 HTSAGVVPVRRLNEHSFFEEEPGPVTATLMENFEPFVLN 277
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
4gbm_A323 CURM sulfotransferase; polyketide synthase, curaci 81.83
4gox_A313 Polyketide synthase; olefin synthase, hydrocarbon, 80.16
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
Probab=100.00  E-value=4.1e-56  Score=428.43  Aligned_cols=254  Identities=31%  Similarity=0.524  Sum_probs=229.1

Q ss_pred             CCCCceEEECCeeecCCCCccCcCCcccccCceEEEEEEEEC---C--eecCHHhHHHHHHHHHHHcCCccccccchHHH
Q 046821           98 ANKNLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYN---G--KVFKLEEHLDRLVKGKQKFGKVIVWYMELVIM  172 (361)
Q Consensus        98 ~~~~~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~---G--~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~  172 (361)
                      .++..++|+||++++.+++.|++.|+||+||||||||||+++   |  ++|+|++|++||.+||++|+|+.   +++.++
T Consensus        25 ~~~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~---p~~~~~  101 (328)
T 3u0g_A           25 ADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDV---PFDQET  101 (328)
T ss_dssp             TSCCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCC---SSCHHH
T ss_pred             ccCCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCC---CCCHHH
Confidence            355678999999999999999999999999999999999998   9  89999999999999999999994   357889


Q ss_pred             HHHHHHHHHHHcc---------C-C-----CCCCC--------------CCCC----CCCeEEEEeccccCCCCCcCccc
Q 046821          173 VKQAIFRTLIRNV---------L-P-----EWKPP--------------VYDN----THGVNLVTATTRRNSPNNLDSKI  219 (361)
Q Consensus       173 l~~~i~~~l~~~~---------~-~-----~~~~p--------------~~~~----~~gi~l~~~~~~r~~~~~~~~~~  219 (361)
                      +.+.+.+++..|-         + .     .+.|+              .|..    .+|+++.+++..|..++..++++
T Consensus       102 l~~~i~~lv~~n~~~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~~~R~~~~~~~~~~  181 (328)
T 3u0g_A          102 LEAAQRDVVRENKLESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRA  181 (328)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEECSSCCCCTTTSCTTS
T ss_pred             HHHHHHHHHHhcCCCCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEeeeeecCCCCcccch
Confidence            9999999998760         0 0     01111              1111    26899999998898888777999


Q ss_pred             c-cccHHHHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCCCCCCchHHHHHHHHHHhCCCcEEEE
Q 046821          220 H-HNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMELVVKENLVLEER  298 (361)
Q Consensus       220 K-t~n~l~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~~iL~GItR~~vl~~~~~~g~~v~e~  298 (361)
                      | ++||+.+++++++|+++|+||+|++|.+|+|+|++++|||+++||+|+||+.+++|+||||+.||++|+++|++|+|+
T Consensus       182 K~t~nyl~~vla~~eA~~~G~~e~l~ld~~g~v~E~~~sNif~v~~g~l~TP~~~~iL~GitR~~vl~~a~~~g~~v~e~  261 (328)
T 3u0g_A          182 KASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLASCLDGITRDTVITLAKEAGIEVIEK  261 (328)
T ss_dssp             CBGGGHHHHHHHHHHHHHTTCSEEEEECTTSCEEEESSSEEEEEETTEEEECCSSSSCCCHHHHHHHHHHHHTTCCEEEC
T ss_pred             hhhhhhHHHHHHHHHHHHCCCCEEEEECCCCcEEEcCceeEEEEECCEEEeCCccccchHHHHHHHHHHHHHcCCeEEEE
Confidence            9 899999999999999999999999999999999999999999999999999866999999999999999999999999


Q ss_pred             ecCHHhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhc
Q 046821          299 RISLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEES  354 (361)
Q Consensus       299 ~i~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~  354 (361)
                      .++++||.+|||+|+|||++||+||.+||++.++++++||++++|+++|.+++++.
T Consensus       262 ~i~~~eL~~adevf~tns~~~v~PV~~Id~~~~~~g~~g~vt~~L~~~~~~~~~g~  317 (328)
T 3u0g_A          262 RITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAFFDVVNGK  317 (328)
T ss_dssp             CCCHHHHHTCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHHHHHTTC
T ss_pred             eCCHHHHhhCCEEEEEcchhhEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999889999999999999998764
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure
>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta} Back     alignment and structure
>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 2e-51
d1iyea_304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 5e-50
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 4e-35
d2a1ha1363 e.17.1.1 (A:3-365) Branched-chain aminoacid aminot 1e-29
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score =  170 bits (431), Expect = 2e-51
 Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 28/274 (10%)

Query: 104 AWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGKVFKLEEHLDRL----------- 152
               D+IV  ++ K+   D   Q GDGV+E ++VYNG++F + EH+DRL           
Sbjct: 3   TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62

Query: 153 ---------------VKGKQKFGKVIVWYMELVIMVKQAIFRTLIRNVLPEWKPPVYDNT 197
                           K +   G +                   ++ V+  +        
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPL 122

Query: 198 HGVNLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNAT 257
             +      T       L   I   NLL  +LAK E +        +L ++  V+E +++
Sbjct: 123 ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKG-CYEAILHRNNTVTEGSSS 181

Query: 258 NIFLVKKGRVLT-PHADYCLPGITRATVMELVVKENLVLEERRISLSEFHTADEVWTTGT 316
           N+F +K G + T P  +  L GITR  V+    + N+ ++E   +  E    DE++ T T
Sbjct: 182 NVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTST 241

Query: 317 MGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKE 350
             EITPV++IDG+++ DGKVG  T+++QK ++ +
Sbjct: 242 TSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETK 275
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.2e-56  Score=421.46  Aligned_cols=251  Identities=32%  Similarity=0.528  Sum_probs=222.2

Q ss_pred             CceEEECCeeecCCCCccCcCCcccccCceEEEEEEEECCe----ecCHHhHHHHHHHHHHHcCCccccccchHHHHHHH
Q 046821          101 NLLAWVGDEIVPRDDAKVSVFDSIVQGGDGVWEGLRVYNGK----VFKLEEHLDRLVKGKQKFGKVIVWYMELVIMVKQA  176 (361)
Q Consensus       101 ~~~~~~ng~~~~~~~~~i~~~d~~l~~G~gvFET~rv~~G~----~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~l~~~  176 (361)
                      ..++|+||+++|.+++.|+++||||+||||||||||+++|+    +|+|++|++||.+||+.|+++.|   .+.+.+.++
T Consensus         2 ~~~i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~---~~~~~~~~~   78 (304)
T d1iyea_           2 ADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVS---QSIDELMEA   78 (304)
T ss_dssp             CSEEEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCC---SCHHHHHHH
T ss_pred             CCEEEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCc---chhhHHHHH
Confidence            45799999999999999999999999999999999999886    78999999999999999999953   466778888


Q ss_pred             HHHHHHHccC----------C-----CCCCC---------------CCC----CCCCeEEEEeccccCCCCCc-Cccccc
Q 046821          177 IFRTLIRNVL----------P-----EWKPP---------------VYD----NTHGVNLVTATTRRNSPNNL-DSKIHH  221 (361)
Q Consensus       177 i~~~l~~~~~----------~-----~~~~p---------------~~~----~~~gi~l~~~~~~r~~~~~~-~~~~Kt  221 (361)
                      +.+++.++-.          .     ...++               .+.    ...|+++.+.+..|..|+.. ...+|+
T Consensus        79 ~~~~v~~n~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~  158 (304)
T d1iyea_          79 CRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAG  158 (304)
T ss_dssp             HHHHHHHTTCSSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBG
T ss_pred             HHHHHHhcccccceEEEEeeecccccccCCccccccceeeccccccccCChhhccCceEEEEeeccccCCCCcccccccc
Confidence            8888887600          0     00011               111    12478888888888777653 467899


Q ss_pred             ccHHHHHHHHHHHHhCCCCeEEEEcCCCcEEecCceeEEEEeCCeEEcCCCC-CCCCchHHHHHHHHHHhCCCcEEEEec
Q 046821          222 NNLLNNILAKIEGNNANAGDAIMLDKDGYVSETNATNIFLVKKGRVLTPHAD-YCLPGITRATVMELVVKENLVLEERRI  300 (361)
Q Consensus       222 ~n~l~~i~a~~~A~~~g~de~Llln~~G~V~E~s~sNlf~v~~g~l~TP~~~-~iL~GItR~~vl~~~~~~g~~v~e~~i  300 (361)
                      +||+.++++.++|+++|+||+||+|++|+|+||+++|||+++||+|+||+.+ ++|+||||+.|+++|++.|++|+|+.+
T Consensus       159 ~n~~~~~~a~~~A~~~g~deal~ld~~g~v~E~s~sNif~vk~~~l~TP~~~~~iL~GItR~~vi~~~~~~gi~v~e~~i  238 (304)
T d1iyea_         159 GNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVL  238 (304)
T ss_dssp             GGHHHHHHHHHHHHHTTCSEEEEECTTSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCC
T ss_pred             cCccccchhhhHHHHcCCcceeeecccCeEeecCceeEEEEeCCEEEEeecccccCCchHHHHHHHHhhhcccceeeccC
Confidence            9999999999999999999999999999999999999999999999999975 799999999999999999999999999


Q ss_pred             CHHhHhhcceeeeecCcCceEEEeEECCEEcCCCCCcHHHHHHHHHHHHHHhhc
Q 046821          301 SLSEFHTADEVWTTGTMGEITPVVKIDGRIVGDGKVGPVTQRIQKVYKKETEES  354 (361)
Q Consensus       301 ~~~dL~~adevfltnS~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~~~  354 (361)
                      +++||.+|||||+|||++||+||.+||++.++++++||+|++|+++|.+++.+.
T Consensus       239 ~~~~L~~AdEvfltns~~gi~PV~~id~~~~~~g~~Gpit~~L~~~~~~i~~g~  292 (304)
T d1iyea_         239 SRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGE  292 (304)
T ss_dssp             BTTHHHHCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHHGGGTTS
T ss_pred             CHHHHHhhCHHhhhCCCCeEEEEEEECCEEcCCCCcCHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999987644
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure