Citrus Sinensis ID: 047258

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLTPNLPVSSSTPTASPLNPPLSLQWPNGGPVLQTFPPPTPPPSLTPAFTSNNGPFISKKKV
Secondary Structure (PSIPRED)
cccccccHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcccccccEEcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
kvkspsirFEELEALLTMAVmdgplestpsnaadvpedpafvNFFSITMtvgnssnvaicvqpyqsntttyvpshpasvsshivptlqipspplsaptplmppidtsesgkltpnlpvssstptasplnpplslqwpnggpvlqtfppptpppsltpaftsnngpfiskkkv
Flexible Loop (DISEMBL)
kvkspsirFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLTPNLPVSSSTPTASPLNPPLSLQWPNGGPVLQTFPPPTPPPSLtpaftsnngpfiskkkv
Low Complexity Region (SEG)
KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSSHIVPTLQIpspplsaptplmppIDTSESGKLTPNLPVSSSTPTASPLNPPLSLQWPNGGPVLQtfppptpppsltpaftsNNGPFISKKKV
Disordered region (IsUnstruct)
**************LL**********************PAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYV****************************************************************************************************
Disordered Region (DISOPRED)
******I***ELEALLTMAVMDG*****************FVNFFSITMTVG******************************************************************************************************************I**K**
Disordered Region (DISEMBL)
KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLT*************PLNPPLSLQWPNGGPVLQTFPPPTPPPSLTPAFTSNNGPFISKKKV
Disordered Region (DISPRO)
****************TMA**D****************PAFVNFFSI*MT***************************************************************************SPLNP*LSLQWPNGGPVLQTFPPPTPPP*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLTPNLPVSSSTPTASPLNPPLSLQWPNGGPVLQTFPPPTPPPSLTPAFTSNNGPFISKKKV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9SJF3	367	mRNA-decapping enzyme-lik	yes	no	0.372	0.174	0.590	9e-11

>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAIC 60
           K  S    FEELEA  TMAVMDGPLE + S A D P+DPAFVNFFS TM +GN+++ +  
Sbjct: 145 KASSSKSEFEELEAKPTMAVMDGPLEPS-STARDAPDDPAFVNFFSSTMNLGNTASGS-A 202

Query: 61  VQPYQS 66
             PYQS
Sbjct: 203 SGPYQS 208


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.128    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,911,661
Number of Sequences: 539616
Number of extensions: 3507372
Number of successful extensions: 27227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 1509
Number of HSP's that attempted gapping in prelim test: 17346
Number of HSP's gapped (non-prelim): 7139
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)

May play a role in the degradation of mRNAs.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
225464884	369	PREDICTED: mRNA-decapping enzyme-like pr	0.837	0.390	0.505	4e-28
224104889	369	predicted protein [Populus trichocarpa]	0.959	0.447	0.555	1e-26
358248438	368	uncharacterized protein LOC100783361 [Gl	0.802	0.375	0.503	2e-24
356543612	366	PREDICTED: mRNA-decapping enzyme-like pr	0.796	0.374	0.493	1e-22
357453179	366	mRNA-decapping enzyme-like protein [Medi	0.819	0.385	0.482	2e-21
225440801	370	PREDICTED: mRNA-decapping enzyme-like pr	0.982	0.456	0.470	5e-19
388506170	279	unknown [Medicago truncatula]	0.616	0.379	0.552	1e-17
217072998	261	unknown [Medicago truncatula]	0.616	0.406	0.517	2e-16
77745454	369	unknown [Solanum tuberosum]	0.773	0.360	0.439	4e-16
255565703	210	mRNA decapping enzyme 1A, putative [Rici	0.337	0.276	0.655	3e-13

>gi|225464884|ref|XP_002273425.1| PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera] gi|296084878|emb|CBI28287.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 107/168 (63%), Gaps = 24/168 (14%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNV 57
           KV S    FEELEA+ TMAVMDGPLE   ST SN ADVP+DP+FVNFFS  +T+GN+S+V
Sbjct: 145 KVSSTKSEFEELEAVPTMAVMDGPLEPSSSTSSNVADVPDDPSFVNFFSEAVTIGNASSV 204

Query: 58  AICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSE---SGKLTP 114
           A+  QPYQS+ T  +PS P +     VPTLQ+ SPP S  T L+P +DTS+   +   T 
Sbjct: 205 AVTGQPYQSSATPPLPSCPPNAIPGTVPTLQLASPPQSTSTSLIPLLDTSQPISTSNRTT 264

Query: 115 NL------------------PVSSSTPTASPLNPPLSLQWPNGGPVLQ 144
           NL                  P+SS+ PTA PL+PP++LQ P G P+LQ
Sbjct: 265 NLVKPSSFFGPPSSSPLMMPPLSSAMPTAPPLHPPVTLQRPYGAPMLQ 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104889|ref|XP_002313607.1| predicted protein [Populus trichocarpa] gi|222850015|gb|EEE87562.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 122/189 (64%), Gaps = 24/189 (12%)

Query: 8   RFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPY 64
            FEELEA+ TMAVMDGPLE   ++ S  +DVP+DPAFVNFFS  MT+GN+S  A+  Q Y
Sbjct: 154 EFEELEAVPTMAVMDGPLEPSSASASVVSDVPDDPAFVNFFSTAMTIGNASAAAVAGQSY 213

Query: 65  QSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSE---SGKLTPNL----- 116
           QS+    + S   SV+S  +PTLQIPS PLSA  PLMP +D S+   S   T NL     
Sbjct: 214 QSSIPIPLHSQLTSVASSTMPTLQIPSTPLSASIPLMPLLDVSDVSSSNNRTANLVKPSF 273

Query: 117 -----------PVSSSTPTASPLNPPLSLQWPNGGPVLQTFPPPTPPPSLTPAF--TSNN 163
                      PVSSS PTA PLNPP SL  P G P+LQ FPPPTPPPSLTPA   + N+
Sbjct: 274 FVPPSSTRMMPPVSSSMPTAPPLNPPTSLHRPYGAPLLQPFPPPTPPPSLTPASVPSPNH 333

Query: 164 GPFISKKKV 172
           GP ISK KV
Sbjct: 334 GPVISKDKV 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248438|ref|NP_001239626.1| uncharacterized protein LOC100783361 [Glycine max] gi|255636473|gb|ACU18575.1| unknown [Glycine max] gi|255641041|gb|ACU20800.1| unknown [Glycine max]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 96/163 (58%), Gaps = 25/163 (15%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNV 57
           KV S    FEELEA+ TMAVMDGPLE   ST SN ADVP+DP+FVNFFS  M +GN+SN 
Sbjct: 145 KVSSTKSEFEELEAVPTMAVMDGPLEPSSSTTSNVADVPDDPSFVNFFSAAMAIGNTSNT 204

Query: 58  AICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSE---SGKLTP 114
            I  QPYQS+      S P   ++  VPTLQIPS  LS  TPL+PP+D  E   S   T 
Sbjct: 205 PITGQPYQSSAAISSSSVPTHTATPTVPTLQIPS--LSQSTPLIPPLDAVESICSSNRTA 262

Query: 115 NL-----------------PVSSSTPTASPLNPPLSLQWPNGG 140
            L                 PVSSSTPTA PL+P +++  P G 
Sbjct: 263 KLVKPSFFVPPPSSAMMIPPVSSSTPTAPPLHPAVNVHRPYGA 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543612|ref|XP_003540254.1| PREDICTED: mRNA-decapping enzyme-like protein-like [Glycine max]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 99/162 (61%), Gaps = 25/162 (15%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNV 57
           KV S    FEELEA+ TMAV+DGPLE   ST SN ADVP+DP+FVNFFS  M +GN+SN 
Sbjct: 145 KVSSTKSEFEELEAVPTMAVIDGPLEPSSSTTSNVADVPDDPSFVNFFSAAMAIGNTSNA 204

Query: 58  AICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSE---SGKLTP 114
            I  QP QS+ T    S P + ++  VPTLQIP+  LSA TPL+P +D +E   S   T 
Sbjct: 205 PINGQPCQSSATISSSSVPTNAATPTVPTLQIPT--LSASTPLIPQLDAAELISSSNRTA 262

Query: 115 NL-----------------PVSSSTPTASPLNPPLSLQWPNG 139
            L                 PVSSSTP+A PL+P +++Q P G
Sbjct: 263 KLVKPSFFVPPPSSAMMIPPVSSSTPSAPPLHPAVNVQRPYG 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453179|ref|XP_003596866.1| mRNA-decapping enzyme-like protein [Medicago truncatula] gi|355485914|gb|AES67117.1| mRNA-decapping enzyme-like protein [Medicago truncatula]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 96/170 (56%), Gaps = 29/170 (17%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNV 57
           KV S    FEELEA+ TMAVMDGPLE   S  SN ADVP+DP+F+NFFS  M +GN+SN 
Sbjct: 145 KVSSTKSEFEELEAVPTMAVMDGPLEPSSSITSNVADVPDDPSFINFFSAAMGIGNTSNA 204

Query: 58  AICVQPYQSNTTTYVPSHPASVSSHIV--PTLQIPSPPLSAPTPLMPPIDTSE---SGKL 112
            I  QPYQS + T   S P   ++ +V  PTLQIPS P S  TP  P  D  E   S   
Sbjct: 205 PITGQPYQS-SATISSSGPTHAATPVVPLPTLQIPSLPTS--TPFTPQHDAPESINSSSQ 261

Query: 113 TPNL------------------PVSSSTPTASPLNPPLSLQWPNGGPVLQ 144
             NL                  PVSSS PTA PL+P  ++Q P G P+LQ
Sbjct: 262 ATNLVKPSFFVPPLSSAAMMMPPVSSSIPTAPPLHPTGTVQRPYGTPMLQ 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440801|ref|XP_002281777.1| PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera] gi|297740156|emb|CBI30338.3| unnamed protein product [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 109/202 (53%), Gaps = 33/202 (16%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE--STPSNAADVPEDPAFVNFFSITMTVG-NSSNV 57
           K+ S    FEELEA+ TMAVM+G LE  ST S   D PED  FVNFF   M +G N+SNV
Sbjct: 145 KLSSSKSEFEELEAVPTMAVMEGMLEPSSTASATTDAPEDSTFVNFFGAAMNIGSNTSNV 204

Query: 58  AICVQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSA----PTPLMPPIDTSESGKLT 113
           A   Q YQ + T    SH  SV    VPTLQ+PS P SA    P P+    D   S  L 
Sbjct: 205 ANSGQSYQPSITVPSFSHAPSVVPSPVPTLQVPSLPRSASSTPPLPIHETPDPISSSNLA 264

Query: 114 PNL-------------------PVSSSTPTASPLNPPLSLQWPNGGPVLQTFPPPTPPPS 154
            NL                   P+ SS PTA  L+PPL+LQ P G P+LQ FPPP PP S
Sbjct: 265 TNLVKPSSFFAPPSSSSALIMPPMPSSMPTAG-LHPPLNLQRPYGAPMLQPFPPPAPPAS 323

Query: 155 LTPAFTS----NNGPFISKKKV 172
           LTP  TS    N GP I++ KV
Sbjct: 324 LTP--TSSPSPNYGPVINRDKV 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506170|gb|AFK41151.1| unknown [Medicago truncatula]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 73/114 (64%), Gaps = 8/114 (7%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNV 57
           KV S    FEELEA+ TMAVMDGPLE   S  SN ADVP+DP+F+NFFS  M +GN+SN 
Sbjct: 145 KVSSTKSEFEELEAVPTMAVMDGPLEPSSSITSNVADVPDDPSFINFFSAAMGIGNTSNA 204

Query: 58  AICVQPYQSNTTTYVPSHPASVSSHIV--PTLQIPSPPLSAPTPLMPPIDTSES 109
            I  QPYQS + T   S P   ++ +V  PTLQIPS P S  TP  P  D  ES
Sbjct: 205 PITGQPYQS-SATISSSGPTHAATPVVPLPTLQIPSLPTS--TPFTPQHDAPES 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072998|gb|ACJ84859.1| unknown [Medicago truncatula]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 71/116 (61%), Gaps = 10/116 (8%)

Query: 1   KVKSPSIRFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNV 57
           KV S    FEELEA+ TMAVMDGPLE   S  SN ADVP+DP+F+NFFS  M +GN+SN 
Sbjct: 145 KVSSTKSEFEELEAVPTMAVMDGPLEPSSSITSNVADVPDDPSFINFFSAAMGIGNTSNA 204

Query: 58  AICVQPYQSNTT--TYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGK 111
            I  QPYQS+ T  +  P+H A+   H    LQIPS      TP  P  D  ES +
Sbjct: 205 PITGQPYQSSATISSSGPTHAATPVVHC--NLQIPSL---TSTPFTPQHDAPESSQ 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77745454|gb|ABB02626.1| unknown [Solanum tuberosum]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 87/157 (55%), Gaps = 24/157 (15%)

Query: 8   RFEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPY 64
            FEELEA+ TMAV+DGPLE   ST SNA  +PED +FVNFFS  MT+GN+S+ A+  Q Y
Sbjct: 152 EFEELEAVPTMAVIDGPLEPSSSTASNAPHLPEDNSFVNFFSNAMTIGNASSTAVQGQLY 211

Query: 65  QSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSE---SGKLTPNL----- 116
            S++ T  P  P +        + +PSPPLSA + L P  +  E   S K + NL     
Sbjct: 212 HSSSATLPPPRPPASVPSSSAPVLLPSPPLSASSLLRPLHEAPEPDVSAKWSSNLVKPSS 271

Query: 117 -------------PVSSSTPTASPLNPPLSLQWPNGG 140
                        P+SSS PTA PL P  +LQ P G 
Sbjct: 272 FFGPPPASSPLMPPISSSVPTAPPLLPLGNLQRPYGA 308

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565703|ref|XP_002523841.1| mRNA decapping enzyme 1A, putative [Ricinus communis] gi|223536929|gb|EEF38567.1| mRNA decapping enzyme 1A, putative [Ricinus communis]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 3/61 (4%)

Query: 9   FEELEALLTMAVMDGPLE---STPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQ 65
           FEELEA+ TMAVMDGPLE   S  SN AD P+DPAFVNFFS  +T+ N+SN  +  QPYQ
Sbjct: 140 FEELEAVPTMAVMDGPLEPSASAASNVADAPDDPAFVNFFSTAITISNASNATVVGQPYQ 199

Query: 66  S 66
           S
Sbjct: 200 S 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2201821	367	DCP1 "decapping 1" [Arabidopsi	0.430	0.201	0.539	8.9e-18

TAIR|locus:2201821 DCP1 "decapping 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 41/76 (53%), Positives = 50/76 (65%)

Query:     1 KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAIC 60
             K  S    FEELEA  TMAVMDGPLE + S A D P+DPAFVNFFS TM +GN+++ +  
Sbjct:   145 KASSSKSEFEELEAKPTMAVMDGPLEPS-STARDAPDDPAFVNFFSSTMNLGNTASGSAS 203

Query:    61 VQPYQSNTTTYVPSHP 76
               PYQS+   + P  P
Sbjct:   204 -GPYQSSAIPHQPHQP 218

GO:0005634 "nucleus" evidence=ISM

GO:0000932 "cytoplasmic mRNA processing body" evidence=NAS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031087 "deadenylation-independent decapping of nuclear-transcribed mRNA" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX000097 hypothetical protein (369 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG2868	335	consensus Decapping enzyme complex component DCP1	96.36

>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]

Probab=96.36  E-value=0.014  Score=52.97  Aligned_cols=154  Identities=19%  Similarity=0.065  Sum_probs=86.5

Q ss_pred             CCCCCCchhhhhhhhhhhhccCCCCCCCCCCCCCCCCChhhhhhhhhcccccCCCCcccccccccCCCcc--cCCCC---
Q 047258            1 KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTT--YVPSH---   75 (172)
Q Consensus         1 kv~s~kSEFEELEAvPt~a~~eGPLEps~s~~~d~~dd~~~~nfFs~a~~iG~~s~~~~~~q~~qs~~~s--v~ss~---   75 (172)
                      |.++.+.+++++++-..+++|++..+.        +||+-++++|+..+.++|--... .+.++++++.-  .+..+   
T Consensus       144 ~~sss~~~~~s~~~p~~i~~m~~~a~~--------~~ep~~v~~~~~~~~l~nl~~~~-~~~p~~s~s~~~~qP~~~~~l  214 (335)
T KOG2868|consen  144 ANSSSQIPPNSVVAPRDIFNMLEKAKD--------PDEPKGVPVKSPTVDLKNLIKES-AGIPIHSSSQRQNQPEQIKQL  214 (335)
T ss_pred             ccCCccCCcccccCchhhhhhhhhccC--------CCCCcccccCCcccchhhhcccc-cCCccccccccccCcchhccc
Confidence            456789999999999999999999665        68888889988888888544332 44555553111  01000   


Q ss_pred             --CCCcccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCc---------------CCCC------CCCCCCCCCCCC
Q 047258           76 --PASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLTPNL---------------PVSS------STPTASPLNPPL  132 (172)
Q Consensus        76 --~p~~~~s~~Pt~q~p~ps~sss~ppld~~~~~~s~~~~tnL---------------p~sS------~~PtApPlhP~~  132 (172)
                        .....+....-++-.... .+..+..|...-  -.+..-+|               ..+|      .+++.+.|....
T Consensus       215 ~~~ep~at~~~~~~~~~~~~-~s~~~~~~~~qe--~~~s~s~i~~~~~~~~~~s~t~~~~~s~~~~~~~~~~~~~l~~~~  291 (335)
T KOG2868|consen  215 TEQEPKATAAPDELPKALIL-SSESPLNDLQQE--FINSTSAIPIAQVSTKPLSPTEGDVSSALIEGQILPTLPALFVVG  291 (335)
T ss_pred             cccCcccccCccccCCcccc-cccCChhhhhhh--hhhcccCcchhhccccccCCCCCCCccccccCCcccccccccccC
Confidence              111111111222111111 111111111100  01111122               1111      166666666655


Q ss_pred             C--CCCCCCCCcccCCCCCCCCCCCCCCcCCCCCCcccccC
Q 047258          133 S--LQWPNGGPVLQTFPPPTPPPSLTPAFTSNNGPFISKKK  171 (172)
Q Consensus       133 ~--~~~pYGtPlLQPFPPP~PppSLtPa~~~~~~pviSRDk  171 (172)
                      .  +++.||+++++.|..+++++.|...  +.   ++.|++
T Consensus       292 s~~q~~~~~~~~~~~~~~~~~~pt~p~~--p~---~~~~~~  327 (335)
T KOG2868|consen  292 SGEQPPSLNPEQFISPNAPTPSPTLPFQ--PQ---QAYVTA  327 (335)
T ss_pred             CCCCCcccCcccccCCCCCCCCCCcCCC--Cc---ccccch
Confidence            4  5699999999999999999999888  32   555554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00