Citrus Sinensis ID: 047392
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 258 | 2.2.26 [Sep-21-2011] | |||||||
| Q1PFC5 | 458 | Pentatricopeptide repeat- | yes | no | 0.980 | 0.552 | 0.625 | 1e-94 | |
| Q9LUJ4 | 562 | Pentatricopeptide repeat- | no | no | 0.554 | 0.254 | 0.238 | 4e-12 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.538 | 0.217 | 0.244 | 2e-11 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.329 | 0.141 | 0.413 | 2e-10 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.701 | 0.350 | 0.244 | 2e-10 | |
| O04504 | 606 | Pentatricopeptide repeat- | no | no | 0.325 | 0.138 | 0.386 | 3e-10 | |
| Q9ZUE9 | 536 | Pentatricopeptide repeat- | no | no | 0.333 | 0.160 | 0.390 | 5e-10 | |
| Q9SFV9 | 880 | Pentatricopeptide repeat- | no | no | 0.484 | 0.142 | 0.323 | 1e-09 | |
| O81908 | 710 | Pentatricopeptide repeat- | no | no | 0.437 | 0.159 | 0.330 | 1e-09 | |
| Q9M1D8 | 473 | Pentatricopeptide repeat- | no | no | 0.531 | 0.289 | 0.304 | 1e-09 |
| >sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 37/180 (20%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
G N+A F+ W + H+ T M V + N +W+ + EM++ +LVT
Sbjct: 145 GWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLD 204
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQF-------------------------------- 198
T++ +++ L + G N+A+ F M++
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLK 264
Query: 199 ---RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD +N++I+ C+ F+ AR +++ M++ F PDV TYT + +YCK G
Sbjct: 265 LFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEF--TPDVVTYTSFVEAYCKEG 322
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + +FH+ CK M ++ ++ +W ++EM R+ N EL+
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M ++ PD Y + +++ALC+ G+ +A + E M
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE 230
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PP++ +T L+ +C+ G
Sbjct: 231 ---KFPPNLRYFTSLLYGWCREG 250
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LIK L EG V+EA+ RM + C+PDV YN ++N +CR G+ + A LL
Sbjct: 158 TTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLR 217
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 218 KMEERNVK--ADVFTYSTIIDSLCRDG 242
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 45 IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPA 100
+ VADV K+I + SP+ S Q+G R + ++ +++ N G
Sbjct: 65 VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR--------VSQEVVEDVLNRFRNAGLL 116
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
YR F+ W E+ H+ H+ M A+ K +WD + M +
Sbjct: 117 TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 162
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +++ T +++ V+EA+ F M+++ P++ A+N +++ALC+ N
Sbjct: 163 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 219
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
KA+ + E M R PD TY+IL+ + K
Sbjct: 220 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK 249
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 170 STVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
S ++C L+ L +E + + M + + +P+V+ +NVVINALC+ G NKAR ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
E M++ G C P+V +Y LI YCK G
Sbjct: 247 EDMKVYG--CSPNVVSYNTLIDGYCKLG 272
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G +AL M F C PD+ YN +I C+ NKA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++ G C PDV TYT +IS YCK G
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG 291
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 124 RFFHFFHNEVTCKEMGIVFA----------RGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+ F EVTC + ++ R GL D + E G +T T T
Sbjct: 251 KVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE-----KGCQPSTRTYT 305
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LIK L + GL+++A F M C+P+V+ Y V+I+ LCR G +A + +M
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
R P V TY LI+ YCK G
Sbjct: 366 --RIFPSVITYNALINGYCKDG 385
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ RG D EM RR G + T LI + +V+EA F M+
Sbjct: 180 LSILLKRGRTGMA-HDLFDEM-RRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ C PDV YN +I+ LCR G A +L M P+V +YT L+ YC
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC 292
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W F H + + +FA K +W + EM + +G T T
Sbjct: 132 AYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNL 189
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI GE GL +A+ F + K F RP ++YN ++N+L V + ++ +QM G
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDG 249
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PDV TY IL+ + + G
Sbjct: 250 F--SPDVLTYNILLWTNYRLG 268
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 258 | ||||||
| 449464228 | 445 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 0.559 | 0.710 | 1e-102 | |
| 297839599 | 459 | binding protein [Arabidopsis lyrata subs | 0.980 | 0.551 | 0.625 | 2e-93 | |
| 11079488 | 410 | hypothetical protein [Arabidopsis thalia | 0.980 | 0.617 | 0.625 | 5e-93 | |
| 145337672 | 458 | pentatricopeptide repeat-containing prot | 0.980 | 0.552 | 0.625 | 8e-93 | |
| 297734359 | 381 | unnamed protein product [Vitis vinifera] | 0.949 | 0.643 | 0.633 | 5e-91 | |
| 225456224 | 432 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.569 | 0.627 | 1e-90 | |
| 255558614 | 441 | pentatricopeptide repeat-containing prot | 0.965 | 0.564 | 0.599 | 2e-84 | |
| 356570227 | 732 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.342 | 0.536 | 2e-72 | |
| 356560456 | 477 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.813 | 0.440 | 0.571 | 2e-66 | |
| 357466379 | 528 | Pentatricopeptide repeat-containing prot | 0.852 | 0.416 | 0.456 | 2e-53 |
| >gi|449464228|ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Cucumis sativus] gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/252 (71%), Positives = 206/252 (81%), Gaps = 3/252 (1%)
Query: 9 SNHTCLVQQVLPLILKNVPFDAKL--AASTTKTQNPFTIESVADVLKSIPRFFFQSPRSI 66
SNH LV Q+L +LKN PFD + AAST+ T ++ +SV+DVL+S+PRFFFQS RSI
Sbjct: 10 SNHR-LVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSI 68
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFF 126
G Q GFRHRTPLKQR LK+EA NNVLVLGP A+R+P K LG+NKA EF++WVE F
Sbjct: 69 GTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHF 128
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
F H+E+TC+EM V ARGN + GLWDFLKEMSRR NG LVTT+T+TCLIKVLGEEGLVN
Sbjct: 129 GFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVN 188
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EAL FYRMKQF C+PDVYAYN VIN LCR+GNF KARFLLEQMELPGFRCPPD++TYTI
Sbjct: 189 EALTAFYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPPDIFTYTI 248
Query: 247 LISSYCKYGMQT 258
LISSYCKY +QT
Sbjct: 249 LISSYCKYSLQT 260
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 208/259 (80%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + ++ Q++ +++N PFDA LA+ST NP+T + V+DVL+SIPRFFF
Sbjct: 1 MKPSQPLCNR---IIDQLIAAMIQNRPFDAVLASSTVA--NPWTQQLVSDVLRSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+K++LG+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYIDPKKISLGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIEIHFGFGHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11079488|gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734359|emb|CBI15606.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 164/259 (63%), Positives = 196/259 (75%), Gaps = 14/259 (5%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQN-PFTIESVADVLKSIPRFF 59
MI SKP + + LV+QVL +++N P DA S K+ N P+T +SV++VL+SIPR F
Sbjct: 1 MIASKPRYHHRSSLVKQVLAAMVQNCPLDA----SPNKSCNQPWTTDSVSEVLRSIPRLF 56
Query: 60 FQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFY 119
FQSPRSIGRQ GFRHR+PLKQR L +E + YR+P KV LG+ KA EFY
Sbjct: 57 FQSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFY 107
Query: 120 HWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179
WVE F F HNE+TC+EMG V ARGN +K LW+FL EM+R+G +VTT+T+TCL+KVL
Sbjct: 108 SWVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVL 167
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPP
Sbjct: 168 GEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPP 227
Query: 240 DVYTYTILISSYCKYGMQT 258
D +TYTILI SYCKY +QT
Sbjct: 228 DSFTYTILIGSYCKYSLQT 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456224|ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/258 (62%), Positives = 194/258 (75%), Gaps = 12/258 (4%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
MI SKP + + LV+QVL +++N P DA S + P+T +SV++VL+SIPR FF
Sbjct: 1 MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQ---PWTTDSVSEVLRSIPRLFF 57
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
QSPRSIGRQ GFRHR+PLKQR L +E + YR+P KV LG+ KA EFY
Sbjct: 58 QSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYS 108
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG 180
WVE F F HNE+TC+EMG V ARGN +K LW+FL EM+R+G +VTT+T+TCL+KVLG
Sbjct: 109 WVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLG 168
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
EEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPPD
Sbjct: 169 EEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPD 228
Query: 241 VYTYTILISSYCKYGMQT 258
+TYTILI SYCKY +QT
Sbjct: 229 SFTYTILIGSYCKYSLQT 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558614|ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540551|gb|EEF42118.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/257 (59%), Positives = 200/257 (77%), Gaps = 8/257 (3%)
Query: 5 KPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPR 64
KP+N+N L+ QV+ L++++ PFD +LA+STT + + ++DVL+SIPRFFFQS R
Sbjct: 4 KPINTN---LINQVISLMIQHRPFDIQLASSTTTSLLSSNL--ISDVLRSIPRFFFQSTR 58
Query: 65 SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVER 124
S+GRQ+ RHR+PLKQR LK+E N +L+LGPAAY++P++V LG+ KA EF++WVE
Sbjct: 59 SVGRQSTTRHRSPLKQRSLKQETHKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVET 118
Query: 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR---GNGELVTTSTVTCLIKVLGE 181
F H E TC+EMG V AR N + LW+FL+EM++R +LVTT+ VTCLIKVLGE
Sbjct: 119 NCDFIHTESTCREMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGE 178
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EGLV EAL+ FYRMK++ C+PDVYAYN +I ALCR+GNF KAR+LLEQMELPGF CPPD
Sbjct: 179 EGLVKEALSLFYRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLLEQMELPGFYCPPDT 238
Query: 242 YTYTILISSYCKYGMQT 258
+TYTI+ISSYCKY +QT
Sbjct: 239 FTYTIMISSYCKYSLQT 255
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570227|ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/259 (53%), Positives = 180/259 (69%), Gaps = 8/259 (3%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
MI + L H L Q L L++K++PFDA + +T ++V +VL+ I R+
Sbjct: 287 MIRTNSLRHFHKHLASQTLVLVIKDLPFDAHPPPPSPSPPP-WTNDAVTEVLRLISRYTL 345
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVT-LGINKATEFY 119
QSPRSIGRQ FRHRTPL+QR L E + +N L+LGPAA+ +P+K LG KA EF+
Sbjct: 346 QSPRSIGRQHTFRHRTPLRQRNLNLEHHKLRSNTLLLGPAAHLDPRKAHHLGPLKALEFF 405
Query: 120 HWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179
WVE F+F H+E TC+E+ + R N +K LW FLK VTT+TVTCLIK+L
Sbjct: 406 RWVEARFNFPHSEPTCRELACLLGRANALKPLWHFLKHSPH------VTTATVTCLIKLL 459
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GE+ L +EAL TF+RMKQFRC+PD ++YN +I+ALCRVG F KAR LL+QMELPGFRCPP
Sbjct: 460 GEQALADEALLTFHRMKQFRCKPDTHSYNTLIHALCRVGKFTKARSLLQQMELPGFRCPP 519
Query: 240 DVYTYTILISSYCKYGMQT 258
D +TYTILISSYC++G+ T
Sbjct: 520 DTFTYTILISSYCRHGILT 538
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560456|ref|XP_003548508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g77405-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 7/217 (3%)
Query: 43 FTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAY 102
++ ++V +VL+SI + Q PRSIGRQ FRHRTPL+QR L E + NN L+LGP A+
Sbjct: 71 WSNDAVTEVLRSISHYTLQFPRSIGRQHTFRHRTPLRQRNLNLEHRKLRNNTLLLGPTAH 130
Query: 103 RNPQKVT-LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161
+P K LG KA EF+HW+E F+F H+E TC+E+ + AR +K LW FLK
Sbjct: 131 LDPYKAHHLGPLKALEFFHWLESRFNFPHSEPTCRELACLLARATALKPLWHFLKHSPH- 189
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
VTT+TVTCLIK+L E+GL +EAL TF+RMKQFRCRPD ++YN +I+ALCRVGNF
Sbjct: 190 -----VTTATVTCLIKLLSEQGLADEALLTFHRMKQFRCRPDTHSYNTLIHALCRVGNFA 244
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
KAR +L+QMELPGFRCPPD +TY+ILISSYC++G+ T
Sbjct: 245 KARSILQQMELPGFRCPPDTFTYSILISSYCRHGILT 281
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466379|ref|XP_003603474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492522|gb|AES73725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 155/250 (62%), Gaps = 30/250 (12%)
Query: 14 LVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG-F 72
L +Q L ++K++PF+ ++ + +T ++V ++L+ I R+ FQS IG Q F
Sbjct: 15 LAKQALVAVIKDIPFET----TSPPSNLIWTPDAVIELLRFISRYSFQS---IGCQNNPF 67
Query: 73 RHRT-PLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHN 131
RHR+ PL + NP L + K+ EF HW+ F+F H
Sbjct: 68 RHRSVPLSN-----------------FKHPHTNPYLTNLSLRKSHEFLHWIHSHFNFLHT 110
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEGLVNE 187
+ T +EM I+ A+ +N LW FLK S R + +VTT TVTCLIK+LGE+GL E
Sbjct: 111 QSTTREMAILIAKSHNTNALWTFLKHFSIRLHTNDHNTIVTTPTVTCLIKLLGEQGLAKE 170
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL TFYRM+QF C+PDV AYN +INA+C VGNF KAR LL+QMELPGF PPDV+TYT+L
Sbjct: 171 ALLTFYRMRQFGCKPDVQAYNALINAMCSVGNFTKARHLLQQMELPGFHSPPDVFTYTVL 230
Query: 248 ISSYCKYGMQ 257
ISSYC+YG++
Sbjct: 231 ISSYCRYGVK 240
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 258 | ||||||
| TAIR|locus:2825891 | 458 | AT1G77405 [Arabidopsis thalian | 0.968 | 0.545 | 0.628 | 2.6e-86 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.538 | 0.217 | 0.244 | 2.4e-10 | |
| TAIR|locus:2101422 | 473 | AT3G60050 "AT3G60050" [Arabido | 0.693 | 0.378 | 0.275 | 1.9e-09 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.434 | 0.184 | 0.347 | 3.9e-09 | |
| TAIR|locus:2064707 | 536 | AT2G06000 "AT2G06000" [Arabido | 0.333 | 0.160 | 0.390 | 4.5e-09 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.418 | 0.123 | 0.336 | 8.6e-09 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.472 | 0.193 | 0.320 | 9.6e-09 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.310 | 0.164 | 0.416 | 1.1e-08 | |
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.585 | 0.235 | 0.287 | 1.7e-08 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.860 | 0.395 | 0.242 | 2.4e-08 |
| TAIR|locus:2825891 AT1G77405 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 161/256 (62%), Positives = 205/256 (80%)
Query: 4 SKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSP 63
S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF SP
Sbjct: 4 SQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFFISP 58
Query: 64 RSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVE 123
RSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+ W+E
Sbjct: 59 RSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIE 118
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVLGEE 182
F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K LGEE
Sbjct: 119 THFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEE 178
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PPD Y
Sbjct: 179 GFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTY 238
Query: 243 TYTILISSYCKYGMQT 258
TYTILISSYC+YGMQT
Sbjct: 239 TYTILISSYCRYGMQT 254
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 35/143 (24%), Positives = 70/143 (48%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + +FH+ CK M ++ ++ +W ++EM R+ N EL+
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M ++ PD Y + +++ALC+ G+ +A + E M
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE 230
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PP++ +T L+ +C+ G
Sbjct: 231 ---KFPPNLRYFTSLLYGWCREG 250
|
|
| TAIR|locus:2101422 AT3G60050 "AT3G60050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 52/189 (27%), Positives = 86/189 (45%)
Query: 69 QTGFRHRTPLKQRILKKEADNIANNVLV--LGPAAYRNPQKVTLGINKATEFYHWVERFF 126
++GF ++ L + + + + + VLV L +Y N + A F+ W
Sbjct: 88 ESGFNSKSVLDE-LNVRVSGLLVREVLVGILRNLSYDNKARCA---KLAYRFFLWSGEQE 143
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
F H + + +FA K +W + EM + +G T T LI GE GL
Sbjct: 144 CFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNLLICSCGEAGLAK 201
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ F + K F RP ++YN ++N+L V + ++ +QM GF PDV TY I
Sbjct: 202 QAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFS--PDVLTYNI 259
Query: 247 LISSYCKYG 255
L+ + + G
Sbjct: 260 LLWTNYRLG 268
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQ 197
+V A NN + F E +R S ++C L+ L +E + + M +
Sbjct: 159 LVLAYANNSRFELGF--EAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIR 216
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +P+V+ +NVVINALC+ G NKAR ++E M++ G C P+V +Y LI YCK G
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG--CSPNVVSYNTLIDGYCKLG 272
|
|
| TAIR|locus:2064707 AT2G06000 "AT2G06000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 34/87 (39%), Positives = 44/87 (50%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G +AL M F C PD+ YN +I C+ NKA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++ G C PDV TYT +IS YCK G
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG 291
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 39/116 (33%), Positives = 61/116 (52%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+E+ ++G L T S + L+K EE +NEAL F MK+ +
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA--EE--INEALVCFQSMKELK 722
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y ++IN LC+V FNKA ++M+ G + P +YT +IS K G
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMK--PSTISYTTMISGLAKAG 776
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 41/128 (32%), Positives = 65/128 (50%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG G VT +T LI+ L + G +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDM 448
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC+ G KA + E ++ + PD+YTY I+
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYNIM 506
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 507 IEGMCKAG 514
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T +I V +EG +EA+ + M + RC PDV+ YN +IN LC G ++A+ +L+
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTR-RCVDPDVFTYNSLINGLCMHGRVDEAKQMLDL 304
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G C PDV TY LI+ +CK
Sbjct: 305 MVTKG--CLPDVVTYNTLINGFCK 326
|
|
| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 44/153 (28%), Positives = 75/153 (49%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R+ ++ + IN +F+ W + +F H+ T + ++ ++E+ R
Sbjct: 97 RSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNT 156
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V+ + ++ L+K LG +V++AL+ FY+ K +C+P YN VI L + G K
Sbjct: 157 YVS-VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEK 215
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +M G C PD TY+ LISSY K G
Sbjct: 216 VHEVYTEMCNEG-DCFPDTITYSALISSYEKLG 247
|
|
| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 153 (58.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 59/243 (24%), Positives = 108/243 (44%)
Query: 23 LKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQS---------P-RSIGRQTGF 72
L N P + ++S +K F I S+A+ ++S +F Q P I + F
Sbjct: 52 LSNKPSSS--SSSVSKDDEDFVIPSLANWVES-QKFSRQQVSEGNVVKKPVEDIDKVCDF 108
Query: 73 RHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE 132
++ + KE +V+V + ++ + G N+A F+ W + H+
Sbjct: 109 LNKKDTSHEDVVKELSKC--DVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSG 166
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
T M V + N +W+ + EM++ +LVT T++ +++ L + G N+A+ F
Sbjct: 167 HTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAF 226
Query: 193 YRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF-RCPPDVYTYTILISS 250
M K + + D A N +++AL + + A ++ L F PD T+ ILI
Sbjct: 227 LEMEKSYGVKTDTIAMNSLMDALVKENSIEHAH----EVFLKLFDTIKPDARTFNILIHG 282
Query: 251 YCK 253
+CK
Sbjct: 283 FCK 285
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 258 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-04 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 9e-16
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV YN +I+ C+ G +A L +M+ P+VYTY+ILI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK--KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 2e-09
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 170 STVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
VT LI ++G V EAL F MK+ +P+VY Y+++I+ LC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 2e-08
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+PDV YN +I+ LCR G ++A LL++ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 2e-05
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 237 CPPDVYTYTILISSYCKYGM 256
PDV TY LI C+ G
Sbjct: 3 LKPDVVTYNTLIDGLCRAGR 22
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 1e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
YN +I+ LC+ G +A L ++M+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK--ERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 149 KGLWDF----LKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
KG WDF +M ++G V V + L+ V G G +++A ++ +
Sbjct: 627 KGDWDFALSIYDDMKKKG----VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+Y+ ++ A N+ KA L E ++ R P V T LI++ C
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR--PTVSTMNALITALC 730
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 3e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGF 235
YN +I+ C+ G +A L ++M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 4e-04
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQME 231
+ YN ++ AL + G+ + A +LE+M+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 6e-04
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
T LI L + G V EAL F MK+ PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMEL 232
C+I++LG EGL++EA A R F +P V + ++ A CR+ N R E++
Sbjct: 467 CMIELLGREGLLDEAYA-MIRRAPF--KPTVNMWAALLTA-CRIHKNLELGRLAAEKLYG 522
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQT 258
G P + Y +L++ Y G Q
Sbjct: 523 MG---PEKLNNYVVLLNLYNSSGRQA 545
|
Length = 697 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 258 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.96 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.96 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.93 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.92 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.69 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.31 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.17 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.03 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.7 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.63 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.62 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.61 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.32 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.27 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.12 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.01 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 97.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.59 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.59 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.55 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.52 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.32 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.28 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.26 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.2 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.17 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.16 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.12 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.07 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.05 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.0 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.88 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 96.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.86 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.82 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.76 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 96.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 96.67 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.62 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 96.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.3 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.23 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.08 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.02 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 95.92 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.9 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.88 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 95.87 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 95.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.72 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 95.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.59 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.51 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.07 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 94.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 94.88 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.83 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.79 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 94.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.57 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 94.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 94.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.36 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.23 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 94.22 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.02 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 93.95 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 93.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.42 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 93.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 93.1 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 93.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 92.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.65 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 92.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 92.22 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 92.12 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 92.09 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 92.09 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 92.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 91.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 91.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 91.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 91.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 91.22 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 91.15 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 90.93 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 90.33 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.09 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 89.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.87 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 89.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 89.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 89.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 89.12 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 88.9 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 87.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 87.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.41 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 86.4 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 86.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 86.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 85.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 85.4 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.2 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 85.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 85.01 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 84.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 84.24 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 83.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 83.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 83.43 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 82.64 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.47 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 82.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 82.02 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 81.78 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 81.68 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.41 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 81.29 | |
| PF11838 | 324 | ERAP1_C: ERAP1-like C-terminal domain; InterPro: I | 81.08 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 80.36 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=235.29 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.++|++|. ..|+.||..+|++||.+|++.|++++|.++|++|.+.|+.| |..+||+||++|++.|++++|.++
T Consensus 630 ~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p--d~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 630 WDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL--GTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 568888888887 45788888888888888888888888888888888888777 888888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++|.+.|+.||.+|||+||.+||+.|++++|.++|++|...|+. ||..||++||.+|++.|++
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~--Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC--PNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCH
Confidence 888888888888888888888888888888888888888888855 8888888888888888765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=234.73 Aligned_cols=143 Identities=18% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|+++|++|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.+.+..||.+||++||++|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 346666666665 3466666666666666666666666666666666553222223666666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|...|+. ||..||++||.+|++.|++
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~--PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK--PDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCH
Confidence 666666666666666666666666666666666666666666643 6666666666666666653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-28 Score=226.36 Aligned_cols=154 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc
Q 047392 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV 167 (258)
Q Consensus 88 ~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 167 (258)
+...||.++.|+...+. .++|+++|++|. ..|+.||..||+++|.+|++.|++++|.+++++|.+.|+.|
T Consensus 289 ~~vt~n~li~~y~~~g~-------~~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-- 358 (697)
T PLN03081 289 TTVAWNSMLAGYALHGY-------SEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-- 358 (697)
T ss_pred ChhHHHHHHHHHHhCCC-------HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC--
Confidence 34456666666666655 459999999998 56999999999999999999999999999999999998776
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|..+||+||++|+++|++++|.++|++|.+ ||++|||+||.+|++.|+.++|.++|++|...|+. ||..||+++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--Pd~~T~~~l 432 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--PNHVTFLAV 432 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCHHHHHHH
Confidence 555666666666666666666666666643 56666666666666666666666666666666643 666666666
Q ss_pred HHHHHHcCCC
Q 047392 248 ISSYCKYGMQ 257 (258)
Q Consensus 248 i~~~~~~g~~ 257 (258)
|++|++.|++
T Consensus 433 l~a~~~~g~~ 442 (697)
T PLN03081 433 LSACRYSGLS 442 (697)
T ss_pred HHHHhcCCcH
Confidence 6666666654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=217.41 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=125.8
Q ss_pred HhhhhhHHHHHHHHHHHHhCccCCCCccccc-------cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHH
Q 047392 79 KQRILKKEADNIANNVLVLGPAAYRNPQKVT-------LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGL 151 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-------~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 151 (258)
.+.+..+++..++..|...|..++..++... ..+++|.+++++|. +.|+.||..+||+||.+|+++|++++|
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 4555566666666666666665555555442 23667888888887 457788888888888888888888888
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 152 ~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.++|++|.+ + |++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.++|++|.
T Consensus 380 ~~vf~~m~~----~--d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 380 RNVFDRMPR----K--NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHhCCC----C--CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 888888743 2 6677888888888888888888888888888888888888888888888888888888888886
Q ss_pred h-CCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 232 L-PGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 232 ~-~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+ .|+. ||..+|++||++|++.|++
T Consensus 454 ~~~g~~--p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 454 ENHRIK--PRAMHYACMIELLGREGLL 478 (697)
T ss_pred HhcCCC--CCccchHhHHHHHHhcCCH
Confidence 5 4644 7777777777777777765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=214.92 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=119.4
Q ss_pred HHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC
Q 047392 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168 (258)
Q Consensus 89 ~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 168 (258)
...||.++.|+...+.. ++|+++|++|. ..|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.| |
T Consensus 253 ~~s~n~li~~~~~~g~~-------~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--d 322 (857)
T PLN03077 253 CISWNAMISGYFENGEC-------LEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--D 322 (857)
T ss_pred cchhHHHHHHHHhCCCH-------HHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc--c
Confidence 34566666666655554 48889999988 55888888888888888888888888888888888888777 7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
..+||+||++|++.|++++|.++|++|.. ||.++||+||.+|++.|++++|.++|++|...|+. ||..||+++|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--Pd~~t~~~ll 396 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS--PDEITIASVL 396 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CCceeHHHHH
Confidence 77888888888888888888888888763 67777888888888888888888888888777744 7777777777
Q ss_pred HHHHHcCCC
Q 047392 249 SSYCKYGMQ 257 (258)
Q Consensus 249 ~~~~~~g~~ 257 (258)
.+|++.|++
T Consensus 397 ~a~~~~g~~ 405 (857)
T PLN03077 397 SACACLGDL 405 (857)
T ss_pred HHHhccchH
Confidence 777777664
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=210.18 Aligned_cols=191 Identities=16% Similarity=0.083 Sum_probs=153.9
Q ss_pred ccccccccCCCCCCcccch---hHhhhhhHHHHHHHHHHHHhCccCCCCccccc-------cCHHHHHHHHHHHHhhCCC
Q 047392 59 FFQSPRSIGRQTGFRHRTP---LKQRILKKEADNIANNVLVLGPAAYRNPQKVT-------LGINKATEFYHWVERFFHF 128 (258)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-------~~~~~a~~~f~~m~~~~~~ 128 (258)
+.++|..+.+...+..+.- +.+.+..+++-.++..|...|..++..++... ..++.|.+++..|. +.|+
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~-~~g~ 319 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-KTGF 319 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-HhCC
Confidence 6666666654333333222 24555666677777777777766666555553 23778999999998 5599
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
.||..+||+||.+|++.|++++|.++|++|.+ | |.++||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~--d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K--DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C--CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 99999999999999999999999999999853 3 77789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
++|.+|++.|++++|.+++++|.+.|+. ||..+|++||++|++.|+++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999965 99999999999999998753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-17 Score=99.90 Aligned_cols=48 Identities=40% Similarity=0.625 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~ 215 (258)
|++|||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 555555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=97.52 Aligned_cols=50 Identities=46% Similarity=0.941 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
||+++||+||++|++.|++++|.++|++|.+.|+. ||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~--P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK--PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999965 999999999999986
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=71.82 Aligned_cols=34 Identities=35% Similarity=0.773 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677788888888888888888888888777774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.2e-11 Score=100.09 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
....||.+||.|+|+=...|.|.+++.+-.+...+. +..+||.+|.+-+-..+ .++..||.+..+.||..|||+
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv--~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV--YREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee--eHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 456789999999999999999999999998876544 88899999988654433 789999999999999999999
Q ss_pred HHHHHHHcCCHHH----HHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 210 VINALCRVGNFNK----ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 210 li~~~~~~g~~~~----a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++++.++.|+++. |.++..||++-|+. |...+|-.+|..+++.++
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVe--PsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVE--PSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCC--cchhhHHHHHHHhcccCC
Confidence 9999999998876 56778999999955 999999999999998875
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-11 Score=67.19 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 162 g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
|+.| |.+|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~P--d~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEP--DVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCC--cHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4444 66677777777777777777777777663
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=88.33 Aligned_cols=134 Identities=11% Similarity=0.014 Sum_probs=111.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|.+.|+++.+. .+.+...+..+...+.+.|++++|.+.++++.+.+ |.....+++.+..+|++.|+.++|.
T Consensus 194 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 4478999999998743 22345677788899999999999999999998763 3223457899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+.++++.+. .|+...++.+...+.+.|++++|..+|+++.... |+..+++.++..++.
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH----PSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----cCHHHHHHHHHHhhh
Confidence 999999875 4777788999999999999999999999998753 999999999988775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-09 Score=89.69 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=112.5
Q ss_pred HHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH
Q 047392 91 ANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170 (258)
Q Consensus 91 ~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 170 (258)
.+.+++.|.+.-.. .+.|.+++++-.. ...+.+..+||.+|.+-+-.- ..+++.+|......| |..
T Consensus 209 t~s~mI~Gl~K~~~-------~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~P--nl~ 274 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSS-------LERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTP--NLF 274 (625)
T ss_pred hHHHHHHHHHHHHh-------HHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCC--chH
Confidence 34556677665532 6699999999884 466789999999997755332 278999999988877 999
Q ss_pred HHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHhHhC--CCCCCCCHH-
Q 047392 171 TVTCLIKVLGEEGLVNE----ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN-KARFLLEQMELP--GFRCPPDVY- 242 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~----a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~-~a~~~f~~M~~~--~~~~~pd~~- 242 (258)
|||++++|.++.|+++. |.+++.||++-|+.|...+|..+|.-+++.++.. .|..+..++... |..++|-..
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998775 5678999999999999999999999999998864 456665555431 222224333
Q ss_pred ---HHHHHHHHHHHcC
Q 047392 243 ---TYTILISSYCKYG 255 (258)
Q Consensus 243 ---ty~~li~~~~~~g 255 (258)
-|..-++.|.+..
T Consensus 355 d~~FF~~AM~Ic~~l~ 370 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLR 370 (625)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 3555555555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-08 Score=86.81 Aligned_cols=140 Identities=10% Similarity=-0.036 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 111 GINKATEFYHWVERFFHFFHN---EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
.+++|.+.|+.+.+.....+. ...|..+...+.+.|+.++|...|+++.+.. |. +...+..+...|.+.|++++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQ-CVRASILLGDLALAQGDYAA 232 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cC-CHHHHHHHHHHHHHCCCHHH
Confidence 366788888887643211111 1234556667778888888888888887653 21 34467777788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|.++|+++.+.+-.....+++.+..+|++.|+.++|...++++.... |+...+..+...+.+.|+.
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY----PGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHhCCH
Confidence 88888888764322224567788888888888888888888887753 7777777788888887764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-09 Score=59.84 Aligned_cols=33 Identities=39% Similarity=0.444 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
|||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=9e-09 Score=57.51 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 202 (258)
+|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=55.98 Aligned_cols=35 Identities=37% Similarity=0.702 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
+|||+||.+|++.|++++|.++|++|.+.|+. ||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~--p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIE--PDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CCC
Confidence 37999999999999999999999999999955 983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-06 Score=81.57 Aligned_cols=136 Identities=8% Similarity=0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.++++.+.. ..+.+...|..+..++.+.|++++|.+.|+++.+.. +. +...+..+..+|.+.|++++|.++
T Consensus 583 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 583 LKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD--SALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555542 223445556666666666666666666666655442 11 333455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|+++.+.. +.+..+|..+...++..|++++|.++++.|...+. .+...+..+...+.+.|+
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---KAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---CChHHHHHHHHHHHHCCC
Confidence 55554421 22344455555555555555555555555544331 233344444444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.1e-08 Score=54.05 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p 239 (258)
+.|||++|.+|++.|+++.|.++|++|++.|+. |
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~--P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVK--P 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C
Confidence 368999999999999999999999999999955 7
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-08 Score=53.75 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-06 Score=82.03 Aligned_cols=136 Identities=12% Similarity=0.017 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|+++.+. .+.+...+..+...+.+.|++++|.+.++++.+.. | .+..++..+...+...|++++|.+
T Consensus 616 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 616 DLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELK--P-DNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356777777766532 12345556666667777777777777777766542 1 134466666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+++.|.+.+ +.+...+..+...+.+.|++++|.+.|+++...+ |+..++..+..++.+.|+
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA----PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCC
Confidence 666666543 3455556666666666666666666666666543 444555555555655554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=77.19 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=113.5
Q ss_pred HHHHHHhhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 118 FYHWVERFF--HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 118 ~f~~m~~~~--~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
++..|...+ +.+-+.....++++.+....+++++..++.+.....-....-..|..++|..|.+.|..+++++++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 555554433 455678889999999999999999999999888773222122236789999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
...|+-||..|||.||+.+.+.|++..|.++..+|...+.- .+..|+.-.+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~--~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEF--DNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998865 7888998888888775
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-08 Score=52.37 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
+|||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999873
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-06 Score=59.46 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHhHhCCCCCCCCH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVG--------NFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g--------~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
|-...|.-+...|++....-+|+..++.|+ .|++.+||.++.+.+++. ++-..+.+|+.|...+++ |+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK--P~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK--PND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC--CcH
Confidence 445566667777889999999999999888 889999999998888754 244578889999988855 999
Q ss_pred HHHHHHHHHHHHc
Q 047392 242 YTYTILISSYCKY 254 (258)
Q Consensus 242 ~ty~~li~~~~~~ 254 (258)
.||+.+|.++.+.
T Consensus 105 etYnivl~~Llkg 117 (120)
T PF08579_consen 105 ETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.2e-06 Score=68.55 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=106.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++++.++++........+.+...|..+-..+.+.|+.++|.+.+++..+.. | -|....+.++..+...|+.+++.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P-~~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--P-DDPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---T-T-HHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHCCChHHHH
Confidence 34778899999877554556788889999999999999999999999998874 2 14667899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~~ 258 (258)
+++....+.. +.|...|..+-.++...|+.++|..+|++..... | |..+...+-.++.+.|+.+
T Consensus 201 ~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 201 EALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc----ccccccccccccccccccccc
Confidence 9999987654 5566778899999999999999999999998754 5 7777888888888888754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.5e-06 Score=75.43 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=75.9
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 167 ~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
++..+|.+++++-.-.|+++.|..++.+|++.|++.+..-|..||-| .++...++.+..-|...|+. |+..||..
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~--p~seT~ad 276 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ--PGSETQAD 276 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCC--CCcchhHH
Confidence 48889999999999999999999999999999999999999888877 88999999999999999966 99999988
Q ss_pred HHHHHHHcCC
Q 047392 247 LISSYCKYGM 256 (258)
Q Consensus 247 li~~~~~~g~ 256 (258)
-+..+..+|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 8777766553
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=56.44 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=69.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCC-CCCcCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEG--------LVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~t~~~li~~~~~~g--------~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
...|..|...+++.....+|+.+++.|+ .| ++.+||.++.+.++.. ++-+.+.+++.|...+++|+..|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lP--sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLP--SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 4567777778999999999999999998 66 8889999999998875 35567889999999999999999
Q ss_pred HHHHHHHHHHc
Q 047392 207 YNVVINALCRV 217 (258)
Q Consensus 207 y~~li~~~~~~ 217 (258)
||.+|..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00018 Score=57.49 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=96.2
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
..+.++|.+.|++..+. .+.+...+..+...+...|++++|.+.+++..+....+ .....+..+-.++...|++++|
T Consensus 78 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 78 LGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHH
Confidence 34577888888777642 22345566677777788888888888888877642111 1333566677778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +.+...+..+...+.+.|++++|..++++..... + .+...+..+...+.+.|+.
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-N--QTAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHHhhH
Confidence 88888877642 2245667777788888888888888888887652 2 4555666666666666553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-05 Score=61.91 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-------
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARG-----NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG------- 183 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g------- 183 (258)
.+.|+... +-..|..+|..+|..+.+. |+++=....+..|.+-|+.- |..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~k--DL~~Y~~LLDvFPKg~fvp~n~f 108 (228)
T PF06239_consen 34 EELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEK--DLEVYKALLDVFPKGKFVPRNFF 108 (228)
T ss_pred HHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcc--cHHHHHHHHHhCCCCCcccccHH
Confidence 45555543 3347888999999998744 77787888899999999877 8899999999998753
Q ss_pred ---------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 184 ---------LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 184 ---------~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
+-+-|++|+++|+..|+-||..|+..|++.|++.+.
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 367799999999999999999999999999999875
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=57.20 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|++.... .+.+...+..+...+...|+.++|.+.+++..+... . +...+..+...+...|++++|.+.
T Consensus 47 ~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 47 LEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-N--NGDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-C--CHHHHHHHHHHHHHcccHHHHHHH
Confidence 45777777766532 123355666667777777777777777777766531 1 334566677777777777777777
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++...... ......+..+-..+.+.|+.++|...|++.....- .+...+..+...+.+.|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP---QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CChHHHHHHHHHHHHcCCH
Confidence 777765321 22344555666667777777777777777766431 2344566666666666653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=62.04 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEE-----GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG----------------NFNKARFL 226 (258)
Q Consensus 168 ~~~t~~~li~~~~~~-----g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g----------------~~~~a~~~ 226 (258)
|..+|..+|+.|.+. |+++-...-+..|.+.|+.-|..+|+.||+.+=+.. +.+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 777899999998765 789999999999999999999999999999976532 34669999
Q ss_pred HHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 227 f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++|...|+- ||..|+..++..+.+.+
T Consensus 126 L~qME~~gV~--Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVM--PDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCC--CcHHHHHHHHHHhcccc
Confidence 9999999976 99999999999998765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-06 Score=77.09 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=79.3
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 117 ~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.++..|+ ..|+.|+.+||.++|.-||..|+++.|- +|.-|+-+..+. +...|+.++.+....++.+.+.
T Consensus 11 nfla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC-------
Confidence 4556666 5699999999999999999999999988 888888877666 7778999999999999988887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 197 QFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 197 ~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
.|..-||+.|..+|.++||+.-
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH
Confidence 6899999999999999999776
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=64.18 Aligned_cols=104 Identities=9% Similarity=-0.033 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFF-HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~-~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
++++..+....+... ...--..|..++|+.|.+.|..+++.+++.+=...|+-| |.+|||.||+.+.+.|++..|.+
T Consensus 82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~--D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP--DNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC--ChhhHHHHHHHHhhcccHHHHHH
Confidence 667777777766432 121223345699999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
|..+|...+...+..|+.--+.+|.+.
T Consensus 160 V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 160 VATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999888888999999888888887
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00087 Score=49.50 Aligned_cols=109 Identities=10% Similarity=-0.012 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
.....+...+.+.|+.++|.+.|+.....+ +. +...|..+-.+|.+.|++++|...+++..+.+ +.+...|..+-.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 445566777889999999999999998864 22 55678899999999999999999999987754 446777777788
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
.+...|+.++|...|++..+.. |+...+.-+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~ 126 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC----GENPEYSELKE 126 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc----cccchHHHHHH
Confidence 8999999999999999998854 77766554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=61.37 Aligned_cols=137 Identities=4% Similarity=-0.129 Sum_probs=92.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...++|++.|++..+. .|+ ...|..+...+...|++++|...|++..+.. | -+..+|..+-..|...|++++|
T Consensus 345 g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 345 GKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--S-EDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred CCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHH
Confidence 3466777777776532 244 4466677777777888888888888776653 1 1345677777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +.+...|..+-..+.+.|+.++|+..|++..... |+ ...|+.+-..+...|++
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF----PEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCH
Confidence 88888776642 2245556666677777888888888888777632 43 45666666666666654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0017 Score=60.09 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=39.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVIN 212 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~ 212 (258)
.|..+-..+...|+.++|...+++..+.. |. +...+..+...+...|++++|.+.+++..+.. .| +...+..+-.
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~ 449 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLD--PT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVM 449 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHH
Confidence 34444444445555555555555544432 11 11112222223334455555555555543321 12 2222333344
Q ss_pred HHHHcCCHHHHHHHHHHhH
Q 047392 213 ALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~ 231 (258)
.+...|+.++|...+.++.
T Consensus 450 ~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 450 FLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhCCCHHHHHHHHHHhh
Confidence 4445555555555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0014 Score=60.60 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.+++..+. -+-+...+..+-..+...|++++|...|++..+.+ |. +...|..+-..|...|+.++|...
T Consensus 320 ~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~-~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PI-SADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67999999988742 12356677777778889999999999999998874 21 345688888899999999999999
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~~g~~ 257 (258)
+++..+.. |+.. .+..+...+...|+.++|...+++.....- |+.. .+..+-..+...|+.
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~---p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL---QDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHhCCCH
Confidence 99998753 5432 333445557778999999999999876531 4433 455566667777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0019 Score=60.86 Aligned_cols=136 Identities=10% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... -+.+...+..+...+...|+.++|...++.+.... |.... .+..+ ..+...|++++|..+
T Consensus 126 ~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~-a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 126 YATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGD-MIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence 45666666666531 12234455566666666666666666666655442 11111 22222 235556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++.+....-.++...+..+...+.+.|+.++|...|++.....- -+...+..+-..|.+.|+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p---~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL---DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCC
Confidence 66655432222333344444555566666666666666655331 223344445555555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0015 Score=61.67 Aligned_cols=137 Identities=7% Similarity=-0.075 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|+++... -+.+...+..+-..+.+.|+.++|.+.+++..+.. | -+...+..+...+...|+.++|..
T Consensus 91 ~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P-~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 91 QPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--S-GNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHCCChHHHHH
Confidence 366999999998743 22345567778888999999999999999998752 2 145578899999999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.++.+.... |+. ..+.. +..+.+.|++++|..+++.+....-. ++...+..+...+.+.|+.
T Consensus 166 ~~~~~~~~~--P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~--~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 166 LARTQAQEV--PPRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFAL--ERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHhC--CCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHCCCH
Confidence 999886543 333 33333 34588999999999999998776422 4455555556677777763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0021 Score=60.12 Aligned_cols=139 Identities=13% Similarity=0.005 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|++.|+...+.....| +...|+.+-..+...|++++|...|++..+.. |. +...|..+-..+...|++++|.
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 46789999998875433334 34567778888889999999999999988753 31 3457888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..|++..+.. +-+...|..+-..+...|++++|...|++..... |+ ...|..+-..+.+.|+.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD----PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----ccCHHHHHHHHHHHHHCCCH
Confidence 9999987753 3457888889999999999999999999998754 54 55666666777777764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.001 Score=44.41 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
|..+...+...|++++|...+++..+.. +. +...+..+..++...|++++|.+.|++....+ +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PD--NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 4556677788999999999999987763 12 33578888999999999999999999987754 33446788888999
Q ss_pred HHcCCHHHHHHHHHHhHhC
Q 047392 215 CRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~ 233 (258)
...|+.++|...|++....
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999988764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0047 Score=46.53 Aligned_cols=103 Identities=7% Similarity=-0.154 Sum_probs=85.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
+..+-..+.+.|++++|.+.|+...... | .+...|..+-.++.+.|++++|...|++..+.. +-+...+..+-.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--P-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 4456777889999999999999988764 2 266689999999999999999999999999753 45778888888999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
.+.|+.++|...|++-.... |+-.-|.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~----p~~~~~~ 129 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS----YADASWS 129 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC----CCChHHH
Confidence 99999999999999998744 7655444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0024 Score=45.64 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVI 211 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~~~ty~~li 211 (258)
++-.+...+.+.|+.++|.+.|+++.+..-........+..+..++.+.|++++|...|++..... .......+..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455677778889999999999999987632111123356678899999999999999999987632 122245677777
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..+.+.|+.++|...+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88889999999999999999865
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00023 Score=59.74 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.++++...++ .++...+..++..+.+.++.+++.+++++.... .....+...|..+-..+.+.|+.++|++.
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45778877665433 256677888888999999999999999998754 22234777888899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+++..+. .|+ ....+.++..+...|+.+++.++++...... + .|...+..+-.+|.+.|+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P--DDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H--TSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c--CHHHHHHHHHHHhccccc
Confidence 9998874 364 7778889999999999999999988887653 2 445567777777777665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.011 Score=47.06 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCC--hHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGL--VNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~--~~~a 188 (258)
.++++..++..... -+.|...|..|-..|...|++++|...|++..+.. | -+...+..+-.+ |...|+ .++|
T Consensus 55 ~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 55 PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--G-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56777777776532 34678889999999999999999999999988764 2 155577777776 467777 5999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
.+++++..+.. +-+...+..+-..+.+.|++++|...|+++.+.. .|+..-+..+ .+-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~---~~~~~r~~~i-~~i 187 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN---SPRVNRTQLV-ESI 187 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCccHHHHH-HHH
Confidence 99999998864 2366778888889999999999999999998864 2666555444 553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=56.97 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
+|+..+...++++.|..+|+++.+.. | ++ ...|...+...++-.+|.+++++.... .+-|....+.-...|.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--P--EV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--C--cH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 34555566677778888888877663 3 43 445667777777777777777777643 22355555555566777
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHHcCCCC
Q 047392 217 VGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYGMQT 258 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~~g~~~ 258 (258)
.++.+.|..+.+++.... |+.. +|..|..+|.+.|++|
T Consensus 247 k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred cCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHH
Confidence 777888888888877643 6555 7777888887777653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.013 Score=49.81 Aligned_cols=81 Identities=10% Similarity=-0.031 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|...|++..+. -+.+...|+.+-..+...|++++|.+.|+...+.. |. +..+|..+-.++...|++++|.+.
T Consensus 80 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~-~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 80 RALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555444421 11234445555555555555555555555554432 11 223444444455555555555555
Q ss_pred HHHHHh
Q 047392 192 FYRMKQ 197 (258)
Q Consensus 192 ~~~M~~ 197 (258)
|++-.+
T Consensus 155 ~~~al~ 160 (296)
T PRK11189 155 LLAFYQ 160 (296)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0028 Score=53.54 Aligned_cols=129 Identities=17% Similarity=0.065 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g~~~~ 187 (258)
+++|+++.+.- .+.-.....|..|.+.++++.|.+.++.|.+.+ . |. +-.-|..++.. .+.+.+
T Consensus 118 ~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--e--D~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 118 YEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--E--DS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--C--CH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--cH-HHHHHHHHHHHHHhCchhHHH
Confidence 45666665321 355666778888999999999999999998753 2 43 44445554433 346899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|..+|+|+.+. +.+++.+.|.+.-+....|++++|.+++++.....- -|..|..-+|-.....|+
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~---~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP---NDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C---CHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHhCC
Confidence 99999998654 567888889999999999999999999988766441 344455556655555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0072 Score=59.31 Aligned_cols=113 Identities=14% Similarity=-0.022 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|+++... .|+...+..+...+.+.|+.++|.+.+++..+.. |. +...+..+.....+.|++++|...
T Consensus 525 ~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~-~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 525 YATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG-DNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc-cHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45566666555421 2333334444445555566665555555554432 10 111111222222233555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+++..+. .|+...|..+-..+.+.|+.++|...|++...
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555442 24445555555555555555555555555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.012 Score=57.72 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+.++|.+.|++.... . +.+...+..+...+.+.|++++|...+++..+.. | +...|..+-..+.+.|+.++|++
T Consensus 557 d~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P--~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 557 NGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--P--SANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred CHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 466777777776632 1 2222223233334445588888888887776542 3 45567777777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
.|++..+.. +-+...++.+-..+...|+.++|...|++..... |+ ...+..+-.++.+.|+.
T Consensus 631 ~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 631 DLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCH
Confidence 888777642 2234455555567777888888888888777643 43 34566666666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.015 Score=45.10 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...|..+-..+.+.|++++|...|++..+.+..+.-....+..+-..|.+.|++++|.+.+++..+.. +-+...+..+-
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44567777888899999999999999887543221124578899999999999999999999988742 22455566666
Q ss_pred HHHHHcCC--------------HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 212 NALCRVGN--------------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 212 ~~~~~~g~--------------~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
..+...|+ +++|.+++++....+ |+- |..++.-+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chh--HHHHHHHHHhcCc
Confidence 66767666 466777777777633 553 7777777666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0053 Score=45.10 Aligned_cols=89 Identities=9% Similarity=0.101 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-------------CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRR-------------GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------------g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
|..++..+|.++++.|+++....+++..-.- +-+..|+..+-.+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567889999999999999888888654211 122246788888888888888888888888888754
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCC
Q 047392 198 -FRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 198 -~g~~p~~~ty~~li~~~~~~g~ 219 (258)
.+++.+..+|..|++-+....+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 6788888888888887765544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0057 Score=46.04 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
...+.+.++.+...++-.+ .....=.+-..+...|++++|...|++..+....+.......-.|-..+...|++++|+.
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3466777888875432111 011222234668889999999999999998763332223345557788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
+++......+ ....+...=+.+.+.|+.++|...|++
T Consensus 107 ~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 107 TLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9977544332 334455566778899999999999875
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.013 Score=51.94 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
...++++...+. .+.+......+...+.+.|+.++|.+++++..+. .+ |. --.++.+....++.+++.+..+
T Consensus 247 ~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~--~~--~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 247 GLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY--DE--RLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--CH--HHHHHHhhccCCChHHHHHHHH
Confidence 444444554432 3457778888999999999999999999998774 23 32 2335666667799999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
...+.. +-|...+.++=..|.+.|++++|.+.|+...... |+..+|-.|-..+.+.|+.
T Consensus 319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----PDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCH
Confidence 988642 2344556677788889999999999999999854 9999999999999988874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.02 Score=50.66 Aligned_cols=89 Identities=8% Similarity=0.010 Sum_probs=44.1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
.+.|+.+.|.+.+.++.+.. |+......-.....+...|+.++|.+.+++..+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 45555666666665554431 21111111122344555566666666665555433 2234445555555556666666
Q ss_pred HHHHHHHhHhCC
Q 047392 223 ARFLLEQMELPG 234 (258)
Q Consensus 223 a~~~f~~M~~~~ 234 (258)
|.+++.++.+.+
T Consensus 206 a~~~l~~l~k~~ 217 (398)
T PRK10747 206 LLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHcC
Confidence 665555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.036 Score=53.41 Aligned_cols=132 Identities=10% Similarity=0.034 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
++|++++.+.... -+.+...+..+-..+.+.|++++|.+++++..+.. +. +...+..+...+...|+.++|...+
T Consensus 32 ~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~--~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 32 AEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ--NDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4667777776531 12334457777777777788888888877766552 12 3334667777777778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHHcC
Q 047392 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYG 255 (258)
Q Consensus 193 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~~g 255 (258)
++..+. .+.+.. +..+-..+...|+.++|...+++..... |+.. .+..+...+.+.|
T Consensus 107 ~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 107 KQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----PQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCC
Confidence 777654 123344 6666667777788888888887777643 4433 3344444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.041 Score=44.67 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH-HHHHHHHHHHHhc-------
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLGEE------- 182 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~t~~~li~~~~~~------- 182 (258)
.++|...|++......-.|. ..++..+-.++.+.|++++|...++++.+..-. .+.. .++..+-.++...
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~ 127 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRD 127 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCC
Confidence 56889999887643211111 235666778888999999999999999876321 1111 1344444444443
Q ss_pred -CChHHHHHHHHHHHhCCCCCCHH-HHH-----------------HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHH
Q 047392 183 -GLVNEALATFYRMKQFRCRPDVY-AYN-----------------VVINALCRVGNFNKARFLLEQMELPGFRCPP-DVY 242 (258)
Q Consensus 183 -g~~~~a~~l~~~M~~~g~~p~~~-ty~-----------------~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ 242 (258)
|+.++|.+.|++..... |+.. .+. .+-..+.+.|+.++|...|++.....-. .| ...
T Consensus 128 ~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 204 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEE 204 (235)
T ss_pred HHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHH
Confidence 77899999999987642 4432 111 2345577889999999999998875310 12 245
Q ss_pred HHHHHHHHHHHcCCC
Q 047392 243 TYTILISSYCKYGMQ 257 (258)
Q Consensus 243 ty~~li~~~~~~g~~ 257 (258)
.+..+..++.+.|+.
T Consensus 205 a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 205 ALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHcCCH
Confidence 788888888888875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=49.71 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++.|.++|++..+...+..++....++|.-++ .++.+.|..+|+...+. +.- +...|..-|+.+.+.++.+.|..+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~--~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPS--DPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT---HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCC--CHHHHHHHHHHHHHhCcHHHHHHH
Confidence 67999999999855445566666666664443 56677799999998877 555 666789999999999999999999
Q ss_pred HHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 192 FYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 192 ~~~M~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
|++.... .|.. ..|...|.-=.+.|+++.+..+.+++.+. -|+......++
T Consensus 93 fer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~----~~~~~~~~~f~ 147 (280)
T PF05843_consen 93 FERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL----FPEDNSLELFS 147 (280)
T ss_dssp HHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH----TTTS-HHHHHH
T ss_pred HHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhhhhHHHHHH
Confidence 9998865 2333 48999999999999999999999999873 25544444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.025 Score=54.40 Aligned_cols=141 Identities=9% Similarity=-0.028 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|++.|+.+.....-.|+-.-. .+-..+...|++++|...|++..+..... ......+..|..++...|++++|.+
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 456666666665331111221111 13445666666666666666655432100 0012234455556666666666666
Q ss_pred HHHHHHhCC-----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFR-----------CRPD---VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g-----------~~p~---~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+++++.... -.|+ ...+..+...+...|+.++|+++++++.... + -+...+..+...+.+.|+
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P--~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P--GNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHhcCC
Confidence 666665431 0112 1233445555666666666666666665532 1 223344444444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.03 Score=43.10 Aligned_cols=98 Identities=12% Similarity=0.004 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
....|..+...+...|++++|...|++.......+.....+|..+-..|.+.|+.++|++.++...... +....+++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355667777788889999999999999876532222233578889999999999999999999987642 2334556666
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 047392 211 INALC-------RVGNFNKARFLLEQ 229 (258)
Q Consensus 211 i~~~~-------~~g~~~~a~~~f~~ 229 (258)
-..+. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 77887755555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=51.10 Aligned_cols=103 Identities=15% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
..+...|++++|.+.|++..+..- -+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|.+.|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P---~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP---NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 344567778888888887776531 145567777777788888888888888776642 2355566667677777888
Q ss_pred HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 220 FNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 220 ~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+++|...|++..... |+-.....++..
T Consensus 86 ~~eA~~~~~~al~l~----P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLA----PGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 888888888777643 555554444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=51.32 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.+.|+++|+++.+.. |+.. -.|...+...++-.+|.+++++..+.. .-+......-...|.+.++.+.|+++
T Consensus 185 ~~~ai~lle~L~~~~---pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 185 YDEAIELLEKLRERD---PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHHHHHHHHHHHhcC---CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 679999999998543 6643 447777777788888999999888653 22555666677778999999999999
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+++... .|+. .+|..|..+|.+.|+++.|.-..+-|..
T Consensus 257 Ak~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 257 AKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999874 4655 5999999999999999999999998864
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.016 Score=48.85 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=57.1
Q ss_pred CccccccCHHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 104 NPQKVTLGINKATEFYHWVERFFHFFHNEV--TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 104 ~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
+.|.....+|.|+++.+-+.+..+++-+.. ..-.|-.-|.++|-++.|+.+|..+.+.|.- -...--.|+.-|-.
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef---a~~AlqqLl~IYQ~ 153 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF---AEGALQQLLNIYQA 153 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh---hHHHHHHHHHHHHH
Confidence 344444556688888777765533322221 2223445577778888888888887775421 22245667777777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 047392 182 EGLVNEALATFYRMKQFR 199 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g 199 (258)
..+|++|+++-++..+.|
T Consensus 154 treW~KAId~A~~L~k~~ 171 (389)
T COG2956 154 TREWEKAIDVAERLVKLG 171 (389)
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 777777777777766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.026 Score=54.47 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=50.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
.+...|++++|.++|+++.+... - +...+..++..|...++.++|++.+++.... .|+...|-.++..+...++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP-~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDP-T--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-C--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44444566666666666555421 1 2233445555555556666666666555543 24444443332222223344
Q ss_pred HHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcC
Q 047392 221 NKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYG 255 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g 255 (258)
.+|.+.++++.... |+ ...+.-++.++.+.|
T Consensus 186 ~~AL~~~ekll~~~----P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 186 YDALQASSEAVRLA----PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcC
Confidence 34666666665543 42 333444444444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=41.06 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=35.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
+.|++++|.++|+++.+.. +-|...+-.+..+|.+.|++++|.++++++.... ||-..|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~----~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD----PDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG----TTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCHHHHHHHH
Confidence 4566666666666665431 1245555556666666666666666666666543 5544444443
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0061 Score=51.32 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
.+|-.+++..-|.+.++.|..+|.+-.+.+ ....++....++|. |...++.+.|.+||+...+. +.-+..-|..-|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 578889999999999999999999998653 22224444444443 33457788899999998764 4567888999999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCCCH---HHHHHHHHHHHHcCCC
Q 047392 213 ALCRVGNFNKARFLLEQMELPGFRCPPDV---YTYTILISSYCKYGMQ 257 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~~~~~pd~---~ty~~li~~~~~~g~~ 257 (258)
-+.+.|+.+.|..+|++.... +. ++. ..|...|+-=.+.|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~--~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LP--KEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SS--CHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cC--chhHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999976 22 333 3788888766666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.029 Score=56.58 Aligned_cols=134 Identities=11% Similarity=0.003 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.++++. .+.+...+..+-..+.+.|+.++|.+.|++..+.. |. +...+..+...|...|+.++|++.
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~-~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PG-NADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5567777652 23455566778888899999999999999998863 21 566789999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC---CHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP---DVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p---d~~ty~~li~~~~~~g~ 256 (258)
++...+. .| +..++..+-..+...|+.++|.++|++.....-.-.| +...+..+-..+-+.|+
T Consensus 660 l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 660 LAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 9987653 34 4455666777888999999999999998865321012 22345444555555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0097 Score=43.73 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMK---------------QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~---------------~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|..++.++|.++++.|+++....+.+..= .....||..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45689999999999999999999997741 123578999999999999999999999999999876
Q ss_pred C-CCCCCCCHHHHHHHHHHHHH
Q 047392 233 P-GFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 233 ~-~~~~~pd~~ty~~li~~~~~ 253 (258)
. +++ -+..+|..|++-+..
T Consensus 81 ~Y~I~--i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIP--IPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCC--CCHHHHHHHHHHHHH
Confidence 4 554 678899999976543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.027 Score=49.64 Aligned_cols=121 Identities=15% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 128 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
++-|.....-|-.-|-+.|+-.+|...+-+--+. +++ |..|..=|-.-|....-+++|+..|++..- ++|+..-|
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~--nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPC--NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 3444555666666666777777776665544333 455 555666666667777778888888877543 57899999
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 208 NVVINALC-RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 208 ~~li~~~~-~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
-.||..|. +.|++.+|.++|.+...+ + .-|..+..-|+..+.-.|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-f--pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-F--PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-C--ccchHHHHHHHHHhccccc
Confidence 88887666 468899999999888764 3 3677777777776665553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0088 Score=50.58 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFA----RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
++.|.+.++.|.+ ...|....+ |..++. -..++.+|..+|+++.+. +++ +..+.|.+.-++...|++++
T Consensus 147 ~dlA~k~l~~~~~---~~eD~~l~q-La~awv~l~~g~e~~~~A~y~f~El~~~-~~~--t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 147 PDLAEKELKNMQQ---IDEDSILTQ-LAEAWVNLATGGEKYQDAFYIFEELSDK-FGS--TPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHHHHHHHHHC---CSCCHHHHH-HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHh---cCCcHHHHH-HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCC--CHHHHHHHHHHHHHhCCHHH
Confidence 6799999999984 335655443 444332 334699999999998776 555 78899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHhCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMELPG 234 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~-~~a~~~f~~M~~~~ 234 (258)
|.+++.+..... +-|..|...+|-+....|+. +.+.+++++++...
T Consensus 220 Ae~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 220 AEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999976543 34666777788888888887 77889999998754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0084 Score=54.30 Aligned_cols=156 Identities=18% Similarity=0.115 Sum_probs=106.0
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHhhCCC-CCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHc---CCCC-C-cCHHH
Q 047392 99 PAAYRNPQKVTLGINKATEFYHWVERFFHF-FHNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRR---GNGE-L-VTTST 171 (258)
Q Consensus 99 ~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~-~p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~-~-~~~~t 171 (258)
+...++...+....+.|+++++... +. .|.+. -++.+...|+..+++++|..++..-.+. -+++ . --..+
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLL---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4444444444444666777766622 22 23333 4666777888899999998888754332 1111 0 12458
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH----hCCCCCCCC
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVYAYNVVINALCRVGNFNKARFLLEQME----LPGFRCPPD 240 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~-----g-~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~----~~~~~~~pd 240 (258)
|+.|-..|-+.|++++|.++|++.... | ..+ ....+|-|=..|.+.++.++|.++|.+-+ ..|. .-||
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~-~~~~ 448 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP-DHPD 448 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC-CCCc
Confidence 999999999999999999999997541 1 122 24567788888999999999999997754 3343 2345
Q ss_pred HH-HHHHHHHHHHHcCCCC
Q 047392 241 VY-TYTILISSYCKYGMQT 258 (258)
Q Consensus 241 ~~-ty~~li~~~~~~g~~~ 258 (258)
+. ||.-|...|.+.|++|
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred hHHHHHHHHHHHHHcccHH
Confidence 44 6999999999999865
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0018 Score=43.84 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKA 223 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a 223 (258)
.|+++.|..+++++.+.... +++...+-.+-.+|.+.|++++|.++++. .+. .++. ...-.+-.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46778888888888776421 11333444478888888888888888877 221 2333 2222334566678888888
Q ss_pred HHHHHH
Q 047392 224 RFLLEQ 229 (258)
Q Consensus 224 ~~~f~~ 229 (258)
.++|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0061 Score=50.46 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC------
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFAR-----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL------ 184 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~------ 184 (258)
.+.|.... +-+.|-.+|-+.+..+.. .+++|=...-+..|++.|+.- |..+|+.||+.+-|..-
T Consensus 54 e~~F~aa~---~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVer--Dl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 54 EKQFEAAE---PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVER--DLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred hhhhhccC---cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchh--hHHHHHHHHHhCcccccccHHHH
Confidence 44555443 334677778777777753 366777778889999999887 77899999999887753
Q ss_pred ----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 185 ----------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 185 ----------~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
-+=+++++++|+.+|+-||-.+--.||++|++.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 34588999999999999999999999999999875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.07 Score=53.84 Aligned_cols=134 Identities=11% Similarity=0.005 Sum_probs=97.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH------------HH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL------------IK 177 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l------------i~ 177 (258)
...++|++.|++.... -+-+...+..|-..+.+.|+.++|...|++..+..-.. .....|..+ -.
T Consensus 283 g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-SNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-cchhHHHHHHHhhhHHHHHHHHH
Confidence 4478999999988743 22367788889999999999999999999987753211 111122222 34
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHH
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSY 251 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~ 251 (258)
.+.+.|++++|.+.|++..+.. +.+...+..+-..+...|++++|++.|++..... |+ ...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 5778999999999999998753 3356677778889999999999999999998754 44 44555554444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.075 Score=50.37 Aligned_cols=128 Identities=15% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|.++++...+ +.|| ....-.+...+.+.+++++|...+++..+.... +....+.+-.++.+.|+.++|.+
T Consensus 102 ~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 102 SDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred cHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHhcchHHHHH
Confidence 5688899888874 3465 445667888999999999999999999887421 44467788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+|++....+ .-+..++..+=.++-+.|+.++|...|.+-.... .|...-|+-.+.
T Consensus 176 ~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~---~~~~~~~~~~~~ 230 (694)
T PRK15179 176 CFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI---GDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---CcchHHHHHHHH
Confidence 999999732 2337888888899999999999999999997752 256666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.049 Score=40.87 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV--YAYNVV 210 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~l 210 (258)
..|..++..+. .++...+.+.++++.+..-.-.......=.+-..+...|++++|...|+......-.|+. ...-.|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34666666664 888999999999999874221011122223447788899999999999999987622222 233445
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
-..+...|++++|+..++...... .....+...=..|.+.|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCCCH
Confidence 677888999999999998855433 3333455555667777764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0054 Score=39.40 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=49.2
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
.+.|++++|.+.|++..+.. |. +...+-.+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46788999999999988774 21 5556778999999999999999999998875 37766665554
|
... |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.088 Score=44.65 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=77.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
....++|.+.|+...+ +.|+ ..+|..+-..+...|+.++|.+.|+...+.. | +..........+...++.++
T Consensus 111 ~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P--~~~~~~~~~~l~~~~~~~~~ 183 (296)
T PRK11189 111 AGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--P--NDPYRALWLYLAESKLDPKQ 183 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHccCCHHH
Confidence 4558888888888763 2243 5667777777888899999999888887653 2 22111222223345678889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC---CCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP---GFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~---~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
|.+.|.+..... .|+...+ .+ .....|+.+.+ +.++.+... .....| ....|..+=..+.+.|+.
T Consensus 184 A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 184 AKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred HHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 988887654321 2332222 22 22335555544 355555532 100001 224566666677777664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.073 Score=47.31 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.|.+.+....+ ..|+... |-..-....+.|+.++|.+.+.+..+.. |..+....-.....+...|++++|.+.
T Consensus 101 ~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 101 AKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred HHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 355555554432 1233222 2222344445566666666666654432 222221222234555556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
++++.+.+ +-+...+..+...+.+.|++++|.+++.++.+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66665543 2244455556666666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.08 Score=43.58 Aligned_cols=122 Identities=19% Similarity=0.125 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g~~~~ 187 (258)
.++|++..+... +.-....=+..+.|..+++-|...+++|.+-. +..|.+-|-.++.+ .+.+.+
T Consensus 124 ~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 124 FDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhccchhhhh
Confidence 557777765522 23334444566778888999999999998764 55678877776655 467999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|.-+|+||.+. +.|+.-+-|.+..++...|++++|..++++...+.- -|..|..-+|-
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~---~dpetL~Nliv 249 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA---KDPETLANLIV 249 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC---CCHHHHHHHHH
Confidence 99999999762 579999999999999999999999999999987653 23444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.032 Score=51.08 Aligned_cols=136 Identities=12% Similarity=0.118 Sum_probs=90.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHH---HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKE---MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~---li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~ 185 (258)
...+|.|..-|+... ..|...||+ |-..|.|.++++.|+-.|+.-.+-+ | .+.+.-..+-..+-+.|+.
T Consensus 468 ~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P-~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--P-SNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred hHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--c-cchhHHhhhhHHHHHhhhh
Confidence 333556666665443 356666776 4456788899999988888776543 3 2444555555666788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH-HHHHHHHHHHcCCC
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT-YTILISSYCKYGMQ 257 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t-y~~li~~~~~~g~~ 257 (258)
|+|++++++..... +-|+-+---....+.-.++.++|...+++++. +.|+..+ |-.+-+.|-+.|+.
T Consensus 540 d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~----~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 540 DKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE----LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHHccc
Confidence 99999999876532 12333333345556677899999999999998 4577665 66666777776653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=49.10 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEE-----GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG----------------NFNKARFL 226 (258)
Q Consensus 168 ~~~t~~~li~~~~~~-----g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g----------------~~~~a~~~ 226 (258)
|..+|-+++.-|... ++++-...-+..|++.|+..|..+|+.||+.+=+.. .-+=+..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 444677777666544 678888888999999999999999999999876643 22348899
Q ss_pred HHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 227 f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++|...|+. ||-.+-..||.++.+-|
T Consensus 146 LeqME~hGVm--PdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVM--PDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCC--CchHHHHHHHHHhcccc
Confidence 9999999977 99999999999998765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.079 Score=50.24 Aligned_cols=122 Identities=9% Similarity=0.050 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY- 205 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~- 205 (258)
.+..+...+-.|-....+.|+.++|..+++...+.. |+ +......+...+.+.+++++|+...++..... |+.-
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHH
Confidence 355668888889999999999999999999998763 31 44467788899999999999999999998754 5554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..+.+=.++.+.|+.++|..+|++....+ || ..++..+=.++-..|+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~----p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH----PEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCH
Confidence 45566677788999999999999999854 55 55666666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.014 Score=43.77 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA 206 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 206 (258)
+...++..+...|+.++|.++...+.... ..|...|..+|.+|...|+..+|.++|+++.. .|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455555666777777777777766653 12555677777777777777777777766632 466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.057 Score=52.15 Aligned_cols=119 Identities=10% Similarity=-0.032 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCH-HH----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 112 INKATEFYHWVERFFHFFHNE-VT----CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~-~~----y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.+.|+.-++.+....+-.|.. .- .--.+-++.+.|+..++.+.|+.|...|.+. -..+--.+.++|...++.+
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~--P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM--PDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC--CHHHHHHHHHHHHhcCCcH
Confidence 778888888877554443432 22 2245667888999999999999999988653 3457889999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFR-----CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g-----~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+|..++++..... ..++......|..++...+++++|..+.+++..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999999996532 244566678999999999999999999999987
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.023 Score=54.10 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=104.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....+.|+++|.+..+ .-+.|..+=|-+--.++..|++++|.++|.+..+.... ..| +|-.+-++|..+|++..|
T Consensus 625 kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~d--v~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FED--VWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCc--eeeeHHHHHHHHHHHHHH
Confidence 3447899999998874 33456777777888899999999999999999998641 124 599999999999999999
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 189 LATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 189 ~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
+++|+...+ .+-.-++...+.|-.++-++|.+.+|.+....-...... -..+-||..+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~--~~~v~FN~a~ 758 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS--NTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc--cchHHhHHHH
Confidence 999999654 555567888899999999999999999998877764421 2334455544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.32 Score=43.20 Aligned_cols=118 Identities=7% Similarity=-0.113 Sum_probs=82.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEV--TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
.+.+.|.+.+.+..+.. |+.. .--.....+...|+.++|.+.++++.+.. | -+......+...|...|++++
T Consensus 132 g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P-~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 132 GDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--P-RHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred CCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHHhhHHH
Confidence 55889999998876432 4432 33334677788999999999999999885 2 144578899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHhHhCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYN-VVINAL---CRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~-~li~~~---~~~g~~~~a~~~f~~M~~~~ 234 (258)
|.+++....+.+.. +...+. .-..++ ...+..+.+.+.+.++....
T Consensus 206 a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 206 LDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 99999999998754 444342 222222 33344445555777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.012 Score=37.48 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|..+|++...
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666666666666543 22444455555556666666666666666654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=37.43 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
++..+...+...|++++|..+|++..+.. +.+...+..+-..+...|++++|.+.|++.....- .+..++..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHH
Confidence 35667788889999999999999987643 23446778888889999999999999999887542 344567777777
Q ss_pred HHHcCC
Q 047392 251 YCKYGM 256 (258)
Q Consensus 251 ~~~~g~ 256 (258)
+...|+
T Consensus 78 ~~~~~~ 83 (100)
T cd00189 78 YYKLGK 83 (100)
T ss_pred HHHHHh
Confidence 776665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.035 Score=47.07 Aligned_cols=136 Identities=10% Similarity=-0.067 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.+|.+.|+.-.++ .|-..||-.|-..|.+....+.|+.+|.+-.+. ++- |+.-..-+-..+-..++.++|.++
T Consensus 239 ~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~--~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 239 PRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPF--DVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred hhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCc--hhhhhhhhHHHHHHHHhHHHHHHH
Confidence 67888888776644 377788998999999999999999999887766 333 432234455566777899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.+..+.. ..++....++-.+|.-.++.|-|+.+|.++.+.|+ -+...|+-+=-+|.-.+++
T Consensus 313 Yk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 313 YKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcch
Confidence 99987642 45677777777888889999999999999999997 3555666554444444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.089 Score=48.33 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=93.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
..+|-|+.-|++..+ +.|+ ...||-|-+++...|++.+|.+.|.+-..- ..-.+| .-+.|-..|...|.+++|
T Consensus 300 G~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~had--am~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHAD--AMNNLGNIYREQGKIEEA 373 (966)
T ss_pred ccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHH--HHHHHHHHHHHhccchHH
Confidence 348888888887663 3455 457999999999999999999999887765 222234 578888999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 189 LATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
..+|..-.+. .|. ...+|.|-..|-+.|++++|...|++..+ ++|+..
T Consensus 374 ~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~fA 422 (966)
T KOG4626|consen 374 TRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----IKPTFA 422 (966)
T ss_pred HHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----cCchHH
Confidence 9999887663 343 35578888888899999999999998886 447654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.16 Score=43.85 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH--HHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDV--YAYNVV 210 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~--~ty~~l 210 (258)
....+-..+...|++++|.+.+++..+.. +. +...+..+-..|...|++++|...+++..... ..|+. ..|..+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~--~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PD--DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC--CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 34455567788999999999999998864 22 45567888889999999999999999887642 12333 345577
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-..+...|+.++|..+|++.....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccc
Confidence 788889999999999999986543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.093 Score=39.42 Aligned_cols=91 Identities=9% Similarity=-0.053 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... -+.+...|..+-..+.+.|++++|...|+...+.. | .+...+..+-.++...|+.++|..
T Consensus 39 ~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p-~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 39 DYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--A-SHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred CHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHcCCHHHHHH
Confidence 367999999998732 23467788888899999999999999999998864 2 255679999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~ 208 (258)
.|++..+. .|+-..|.
T Consensus 114 ~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 114 AFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHh--CCCChHHH
Confidence 99998874 46655554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.21 Score=40.86 Aligned_cols=121 Identities=17% Similarity=0.051 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
-|....+.+.....+.|++.+|...+.+...- -++ |..+||.+=-+|-+.|++++|..-|.+-.+.- .-+...+|.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~--d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nN 173 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APT--DWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANN 173 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCC--ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhh
Confidence 34445555777777788888888888777654 223 66778888888888888888887777766531 124455677
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|-..+.-.|+.+.|+.++..-...+. -|...-.-+.-.....|++
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~---ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPA---ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHHhhcCCh
Confidence 77777777888888888877776652 2444445555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0082 Score=40.51 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..+.|+.+|+++.....-.++...+-.+-.++.+.|+.++|.++++. .+.+ +. +....-.+-.+|.+.|++++|++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 36799999999875432122344455588999999999999999988 2221 11 22334455788999999999999
Q ss_pred HHHH
Q 047392 191 TFYR 194 (258)
Q Consensus 191 l~~~ 194 (258)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.14 Score=45.37 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH---HHHccCChHHHHHHHHHHHHc----------------
Q 047392 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGI---VFARGNNVKGLWDFLKEMSRR---------------- 161 (258)
Q Consensus 101 ~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~---~~~~~g~~~~a~~~~~~m~~~---------------- 161 (258)
..++..-...+.+.|.++|++..+. |..+-.+|.+ .+-..|++++|++.|-.+..-
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555567788999999888742 3333222222 234567788887777554322
Q ss_pred ----------------CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 162 ----------------GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 162 ----------------g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
.+.| -|..+.+-|-+.|-+.|+-.+|.+.+.+--. -++-|..|...|-..|....-+++|..
T Consensus 570 ~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 1111 1444566666666666666666665443221 234466777777777888888899999
Q ss_pred HHHHhHhCCCCCCCCHHHHHHHHHHHH-HcCC
Q 047392 226 LLEQMELPGFRCPPDVYTYTILISSYC-KYGM 256 (258)
Q Consensus 226 ~f~~M~~~~~~~~pd~~ty~~li~~~~-~~g~ 256 (258)
+|++-.- +.|+..-|..||.+|. +.|+
T Consensus 648 y~ekaal----iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 648 YFEKAAL----IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHh----cCccHHHHHHHHHHHHHhccc
Confidence 9988765 4599999999998876 4554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.37 Score=41.57 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|.+.+++..+. -+.+...+..+-..+...|++++|...+++..+... .+......|-.+...+...|+.++|.
T Consensus 129 ~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 367777777776532 223345566666777777777777777777655421 12112234556667777777777777
Q ss_pred HHHHHHHh
Q 047392 190 ATFYRMKQ 197 (258)
Q Consensus 190 ~l~~~M~~ 197 (258)
+++++...
T Consensus 207 ~~~~~~~~ 214 (355)
T cd05804 207 AIYDTHIA 214 (355)
T ss_pred HHHHHHhc
Confidence 77777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.26 Score=39.86 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=84.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHcc--------CChHHHHHHHHHHHHcCCCCCcCHHHH--------
Q 047392 110 LGINKATEFYHWVERFFHFFHNE-VTCKEMGIVFARG--------NNVKGLWDFLKEMSRRGNGELVTTSTV-------- 172 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~t~-------- 172 (258)
..+++|.+.|++..+...-.|.. .++..+-.++.+. |+.++|.+.|++..+.... +...+
T Consensus 84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~ 160 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDY 160 (235)
T ss_pred CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHH
Confidence 34779999999987543212221 1233333334433 6788999999999876421 11111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 173 ---------TCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 173 ---------~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-.+-..|.+.|+.++|...+++..... -+.....+..+...+.+.|+.++|..+++.+....
T Consensus 161 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 161 LRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 134566888999999999999987642 22345788999999999999999999999988653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.21 Score=35.26 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|.+.|.++.....- ......+..+...+.+.|++++|...|++.....-........+..+-.++.+.|+.++|.
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHH
Confidence 366999999998754311 1113456668889999999999999999998753211112345778888899999999999
Q ss_pred HHHHHHHhCC
Q 047392 190 ATFYRMKQFR 199 (258)
Q Consensus 190 ~l~~~M~~~g 199 (258)
+.+++..+..
T Consensus 97 ~~~~~~~~~~ 106 (119)
T TIGR02795 97 ATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHC
Confidence 9999998763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.26 Score=42.78 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---------------------------------------cCHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---------------------------------------VTTS 170 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---------------------------------------~~~~ 170 (258)
.+.........+|.+.|++.+...+...|.+.|.--+ -+..
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~ 264 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE 264 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh
Confidence 3455677777888888888888888888877762110 1222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------------------HHHHHHHHHHHcCCH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY------------------------------AYNVVINALCRVGNF 220 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~------------------------------ty~~li~~~~~~g~~ 220 (258)
.-.+++.-+.++|+.++|.++..+-.+.+..|+.. .+.+|=..|.+.+.|
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 45567777888999999999988877766555433 335555667789999
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+|.+.|+.-... .|+..+|+.+-.+|.+.|+.
T Consensus 345 ~kA~~~leaAl~~----~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 345 GKASEALEAALKL----RPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCh
Confidence 9999999966654 39999999999999998874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.15 Score=43.18 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHH-------HHHHHHh
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCK---EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-------LIKVLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~-------li~~~~~ 181 (258)
.++|+++|-+|.+ -|..||. +|=+-|-+.|.+|.|.++...+.++ |+. |++- |-.=|.+
T Consensus 51 ~dKAvdlF~e~l~-----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl---T~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 51 PDKAVDLFLEMLQ-----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL---TFEQRLLALQQLGRDYMA 119 (389)
T ss_pred cchHHHHHHHHHh-----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC---chHHHHHHHHHHHHHHHH
Confidence 5699999999985 2333333 4556677889999999999999876 422 3443 4445778
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~ 236 (258)
.|-+|.|+.+|....+.|. .-...---|+.-|-...+|++|.++-.+....+..
T Consensus 120 aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred hhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 8999999999999987442 23345677899999999999999999999886643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.16 Score=37.10 Aligned_cols=92 Identities=9% Similarity=-0.011 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|+..... -+.+...|..+-..+.+.|++++|...++...+.+ +. +..++..+-.+|...|+.++|...
T Consensus 33 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~--~~~~~~~la~~~~~~g~~~~A~~~ 107 (135)
T TIGR02552 33 YDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PD--DPRPYFHAAECLLALGEPESALKA 107 (135)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 56899999888643 23467788888889999999999999999987764 22 455677788899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~l 210 (258)
|++..+. .|+...+..+
T Consensus 108 ~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 108 LDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHh--ccccchHHHH
Confidence 9998874 3665554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.25 Score=43.94 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|...+..+... .||-.. +......+.+.++.++|.+-++.+.... |.. ....-.+-.+|.+.|+..+|++
T Consensus 322 ~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~-~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 322 YDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNS-PLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHhcCChHHHHH
Confidence 66788888876532 255444 4445567788899999999998887752 321 3345566778888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
++++-... .+-|...|..|-.+|...|+..++..-..|+
T Consensus 396 ~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88887754 3567888888888888877766666555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.23 Score=45.76 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=43.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVIN 212 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~ 212 (258)
.+|-|-..|-+.|++++|...|++-.+ +.|.. ...|+.|=..|-..|+++.|...+.+-... .|. ...++.|-.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLas 464 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLAS 464 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHH
Confidence 344444444455555555555544433 22211 113444444444444555555544444432 122 233455555
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 047392 213 ALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|-..|++.+|.+-|++-..
T Consensus 465 i~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhccCCcHHHHHHHHHHHc
Confidence 55556666666666666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.05 Score=40.76 Aligned_cols=71 Identities=27% Similarity=0.263 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH-----hCCCCCCCCHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-----LPGFRCPPDVYTY 244 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~-----~~~~~~~pd~~ty 244 (258)
....++..+...|++++|.++.+...... +.|...|-.+|.+|.+.|+...|.++|+++. +.|+. |+..|-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~--Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE--PSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS------HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC--cCHHHH
Confidence 46778888899999999999999998743 4578899999999999999999999999884 35755 887763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.6 Score=37.79 Aligned_cols=137 Identities=14% Similarity=0.053 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+.|.+.|++... +.|+ ....|-.=.-+|..|++++|+..|++-...-.-+.+. .||..+--|..+.|+.+.|.+
T Consensus 85 ~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s-~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 85 NDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPS-DTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred hhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcc-hhhhhhHHHHhhcCCchhHHH
Confidence 4477777776552 2233 3345555556777788888888887766552212222 267777777788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.|++-.+.. +-...+.-.+-....+.|+.-.|..+++.....+. ++..+.-.-|+.--+.|+
T Consensus 161 ~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---~~A~sL~L~iriak~~gd 222 (250)
T COG3063 161 YLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---ccHHHHHHHHHHHHHhcc
Confidence 888776642 12334455666777778888888888877777653 666665555555444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.28 Score=43.69 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=88.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFN 221 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~ 221 (258)
...|..++|+..++.+... .+- |..-.....+-+.+.++.++|.+-++.+... .|+ ...+-.+=.++.+.|+..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~--N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPD--NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3578899999999998877 333 6667777888999999999999999999874 466 445556668899999999
Q ss_pred HHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 222 ~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+|..++++-.... .-|...|..|-.+|...|+.
T Consensus 392 eai~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 392 EAIRILNRYLFND---PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHHhhcC---CCCchHHHHHHHHHHHhCch
Confidence 9999999998764 26778999999999999874
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.3 Score=40.71 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNV 209 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ 209 (258)
...|+..+.-+.+.|++++|...|+.+.+.-..-....-.+--+-..|...|++++|...|+.+.+. +-......+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4557777766677899999999999999874211111235667788899999999999999999753 11112333444
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+...+-..|+.++|..+|++....- |+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y----P~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY----PGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----cCCH
Confidence 5556778999999999999998854 6654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.4 Score=39.28 Aligned_cols=115 Identities=12% Similarity=0.003 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
...|+..|.+... .-++|...|+.+--+|-+.|++++|..-|.+-.+-- .- +...+|-|--.|.-.|+.+.|..+
T Consensus 116 ~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~--~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 116 FGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PN--EPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred hHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cC--CchhhhhHHHHHHHcCCHHHHHHH
Confidence 5689999998864 567899999999999999999999999999887762 22 333689999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+.+-...+- -|...=..+.-.....|++++|+.+-..-..
T Consensus 191 ll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 191 LLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 999987653 2556667778888899999999998765544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.34 Score=48.44 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
-+...++|++....+ -.-..|..|...|.+.++.++|-++++.|.+. ++- ...+|...++.+.+..+-+.|.++
T Consensus 1513 eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q--~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQ--TRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred HHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcc--hhhHHHHHHHHHhcccHHHHHHHH
Confidence 345566666665321 22344666666666666677777777766655 322 333566666666666665555555
Q ss_pred HHHHHhCCCCC-------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRP-------------------------------------DVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p-------------------------------------~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+.+..+. -| -.-.|+..|+.=.++|+.+.++.+|++....+
T Consensus 1587 L~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1587 LKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 5554331 12 12345666666666666666666666666655
Q ss_pred CC
Q 047392 235 FR 236 (258)
Q Consensus 235 ~~ 236 (258)
+.
T Consensus 1665 l~ 1666 (1710)
T KOG1070|consen 1665 LS 1666 (1710)
T ss_pred CC
Confidence 44
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.086 Score=48.36 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcC----------------------------
Q 047392 112 INKATEFYHWVERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEMSRRG---------------------------- 162 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------- 162 (258)
..+|+..|...+.. . +|. ....-+-.+|...++.++|.++|+...+..
T Consensus 335 ~~~A~~~~~klp~h--~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--H-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHhhHHh--c-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 66888888876532 1 333 334445577888888999999998887763
Q ss_pred ----CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 163 ----NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 163 ----~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.. .-...||.++=++|.-.++.+.|++.|++-.+.. | ...+|+.+=+-+.....+|.|+..|..-.
T Consensus 412 ~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 412 DLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 00 1134478888888888899999999888877632 3 44555444444555555555555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.39 Score=48.02 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHFFH---NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
++.|.+++++....-++.- -.-.|.++++--.--|.-+...++|++..+.- . ...+|..|..-|.+.+..++|
T Consensus 1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d---~~~V~~~L~~iy~k~ek~~~A 1549 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D---AYTVHLKLLGIYEKSEKNDEA 1549 (1710)
T ss_pred hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c---hHHHHHHHHHHHHHhhcchhH
Confidence 4577777777654322221 13457788887777787888999999988763 2 234799999999999999999
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.++++.|.+ .| -....|...++.+.+..+-+.|.+++++-..
T Consensus 1550 ~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1550 DELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999976 34 4566777777777777776666666655543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.23 Score=45.01 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=101.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCC--cCHHHHHHHHHHHHhcCC
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--NGEL--VTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~--~~~~t~~~li~~~~~~g~ 184 (258)
..+.+.|.++|.+... -.+-|...++-+--..-..+.+.+|...|..-...- ..+. --.-+++-|=+.|.|.++
T Consensus 393 t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 4447788888877652 233445566665555556777888888887765220 0010 022357888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
.++|+.-|+.-... .+-|..||.++=-.|...|+++.|.+.|++-.. +.||-.+-+.|++.+...
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHHHHHh
Confidence 99999999998764 256888999998899999999999999999885 449999999988876543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.076 Score=34.40 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=31.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..|.+.+++++|.++++++...+ +-+...|...=..+.+.|++++|.+.|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34555666666666666665532 2233444444455556666666666666666533
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.68 Score=42.24 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhCC--CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFH--FFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG----NGE-LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~--~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~t~~~li~~~~ 180 (258)
.++|..+++...+..- +.++ ..+|+.|-..|-..|++++|+++|++..... ..- .-....++-|-..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 5677777665433221 2233 3578899999999999999999998866541 111 111235788888999
Q ss_pred hcCChHHHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh----CCCCCCCCHHHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMK----QFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISS 250 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~----~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~----~~~~~~pd~~ty~~li~~ 250 (258)
+.++.++|.++|.+-+ ..| .+-...+|..|...|-+.|++++|.++-+.... .+....|+..........
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 9999999999999854 333 222347799999999999999999999877642 222234777777666655
Q ss_pred HH
Q 047392 251 YC 252 (258)
Q Consensus 251 ~~ 252 (258)
+.
T Consensus 501 ~~ 502 (508)
T KOG1840|consen 501 LS 502 (508)
T ss_pred HH
Confidence 54
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.31 Score=42.52 Aligned_cols=95 Identities=8% Similarity=-0.066 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.|++.... -+-+...|..+-.+|.+.|++++|...+++..+.. | .+...|..+-.+|...|++++|...
T Consensus 18 ~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P-~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 18 FALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--P-SLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66999999998743 22456678788889999999999999999998864 2 2556788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~ 213 (258)
|++..+. .|+......++..
T Consensus 93 ~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 93 LEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 9999874 3666555555433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.48 Score=42.91 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
...+.+++........|+. +|..+|+..-|..-++.|..+|.+..+.+..+ -++++++++|.-||. ++.+-|.+||+
T Consensus 349 ~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-HHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-chhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3444455544444455544 56667788788888999999999998887654 478889999998875 57788999998
Q ss_pred H-HHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH--HHHHHHHHHHHHcCCC
Q 047392 194 R-MKQFRCRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV--YTYTILISSYCKYGMQ 257 (258)
Q Consensus 194 ~-M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~--~ty~~li~~~~~~g~~ 257 (258)
- |+..| |... -+..++-+.+.++-..|.-+|++....+++ ||. ..|..+|+-=+.-|++
T Consensus 426 LGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~--~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 426 LGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS--ADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC--hhhhHHHHHHHHHHHHhcccH
Confidence 7 44544 3333 367788888899999999999999988654 554 5788888776666653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.8 Score=37.07 Aligned_cols=136 Identities=11% Similarity=-0.026 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+...|.+-+++..+. .|+ ..+|.++-..|-+.|..+.|.+-|+.-.... |+ +..+.|.-=.-+|..|++++|.
T Consensus 50 d~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~-~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 50 DYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PN-NGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred CHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CC-ccchhhhhhHHHHhCCChHHHH
Confidence 366666666665532 243 4567777788888888888888888766542 21 1123444444567788888888
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH-HHHHHHHHHHHHcCC
Q 047392 190 ATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYGM 256 (258)
Q Consensus 190 ~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~-~ty~~li~~~~~~g~ 256 (258)
.-|++-...- ..--..||..+--+..+.|+.+.|++.|++-.... |+. .+.-.|-....+.|+
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----PQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC----cCCChHHHHHHHHHHhccc
Confidence 8888876531 11123466677777778888888888888877644 332 234444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.61 Score=41.72 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+..|..+|+..... . ..+...|--.+..=.++..+..|.-+++.-..- -|.+|. .|---+.+=-..|++..|.+|
T Consensus 89 ~~RARSv~ERALdv-d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdq-lWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 89 IQRARSVFERALDV-D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQ-LWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHhc-c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence 45666666655431 1 233334444444444555555555555554432 122232 233333444444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|++-.+ ..||...|++.|.-=.+-..++.|..+|++.+-.+ |++.+|---
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H----P~v~~wiky 213 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH----PKVSNWIKY 213 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec----ccHHHHHHH
Confidence 555433 34555555555555555555555555555555432 555554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.45 Score=37.81 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=79.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-CRVGN--FN 221 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~-~~~g~--~~ 221 (258)
.++.+++...++...+.. ..|...|..|-..|...|++++|...|++..+.. +-|...+..+-.++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 566677777777766653 2267789999999999999999999999988754 23666677776654 67777 59
Q ss_pred HHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 222 KARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 222 ~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
+|.+++++..+.+ | +...+..+-..+.+.|++
T Consensus 128 ~A~~~l~~al~~d----P~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 128 QTREMIDKALALD----ANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHHHHHhC----CCChhHHHHHHHHHHHcCCH
Confidence 9999999999866 5 455677777777777764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.56 Score=42.57 Aligned_cols=172 Identities=13% Similarity=-0.001 Sum_probs=107.1
Q ss_pred HHHhcCCccccccccccCCCCCCcccchh-----H-------hhhhhHHHHHHHHHHHHhCccCCCCccccccCHHHHHH
Q 047392 50 DVLKSIPRFFFQSPRSIGRQTGFRHRTPL-----K-------QRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATE 117 (258)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-----~-------~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~ 117 (258)
-++.-+|..+..+..+.| |+.++.. . -++.......+.|...+..+..... .....+.|.+
T Consensus 182 L~lSlLPp~~~kll~~vG----F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~---~~~~~~~a~~ 254 (468)
T PF10300_consen 182 LVLSLLPPKVLKLLSFVG----FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG---EDVPLEEAEE 254 (468)
T ss_pred HHHHhCCHHHHHHHhhcC----cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc---cCCCHHHHHH
Confidence 334448887776666654 5666652 0 1111112233455555555554410 2233779999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHHcC-CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 118 FYHWVERFFHFFHNEVTCKEMG-IVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 118 ~f~~m~~~~~~~p~~~~y~~li-~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
+++++..++ |+..-|...- +.+...|++++|.+.|++..+.. .-+......|=-+.-++.-..++++|.+.|.++
T Consensus 255 lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 255 LLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999998764 8877776444 33456799999999999765421 112334455666777788999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHH-HcCCH-------HHHHHHHHHhHh
Q 047392 196 KQFRCRPDVYAYNVVINALC-RVGNF-------NKARFLLEQMEL 232 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~-~~g~~-------~~a~~~f~~M~~ 232 (258)
.+..- -+..+|.-+..+|. ..|+. ++|.++|.+...
T Consensus 332 ~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 87431 23444444443332 46777 889999988753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.44 Score=42.38 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
.+...|+.+-.+|.+.|++++|...|++-.+.. |+.. ..+|..+-.+|++.|+.++|++.+++..+.+ .+ -|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 456778889999999999999999999977653 4212 1469999999999999999999999988742 11 12
Q ss_pred HHHHH--HHHHcCCHHHHHHHHHHhHhCCC
Q 047392 208 NVVIN--ALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 208 ~~li~--~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
..+.. .+..-.+.++..++++++...|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11122233456666666666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.65 Score=38.41 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFA----RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
++.|.+..++|.+- -+..|.+-|-+++. ..+++.+|.-+|++|-++ ..| +..+-|-+..++...|++++
T Consensus 153 ~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~--T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPP--TPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCC--ChHHHccHHHHHHHhcCHHH
Confidence 67888888888742 45667776666654 345688999999999875 556 77789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPG 234 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~f~~M~~~~ 234 (258)
|..++++..... .-+..|...+|-+--..| +.+-..+...+.+...
T Consensus 226 Ae~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 226 AESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 999999987643 234555555555444445 4566677777777654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.055 Score=35.69 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQ----FRC-RPD-VYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~-~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.+|+.+-..|...|++++|+..|++..+ .|- .|+ ..+++.+-..+...|+.++|+++|++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677788888888888888888888653 221 122 5667777778888888888888887654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.078 Score=33.57 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=46.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
-..+.+.|++++|.+.|++..+.. |. +...+..+-.++...|++++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778999999999999998875 21 566788888999999999999999999865
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.63 Score=33.82 Aligned_cols=105 Identities=18% Similarity=0.082 Sum_probs=67.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHH-HHHHHHHHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD---VYA-YNVVINALCR 216 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~t-y~~li~~~~~ 216 (258)
++-..|+.++|..+|++-.+.|.....-...+=.+-..|...|+.++|..+|++..... |+ ... ...+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 44567888888888888888775432222234456667778888888888888876531 43 111 1122235667
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.|+.++|.+.+-+-.. ++...|.--|..|..
T Consensus 88 ~gr~~eAl~~~l~~la------~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA------ETLPRYRRAIRFYAD 118 (120)
T ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 7888888888866553 444477777776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.12 Score=48.51 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=87.7
Q ss_pred HHHHHHHHhC--ccCCCCccccccCHHHHHHHHHHHH--------hhCCCCCCHH--------------HHHHHHHHH--
Q 047392 89 NIANNVLVLG--PAAYRNPQKVTLGINKATEFYHWVE--------RFFHFFHNEV--------------TCKEMGIVF-- 142 (258)
Q Consensus 89 ~~~~~~l~~g--~~~~~~~~~~~~~~~~a~~~f~~m~--------~~~~~~p~~~--------------~y~~li~~~-- 142 (258)
.++-..++.| |...++.|..+.+++.|++.|++-. .++.++..++ -|.+.|+.|
T Consensus 652 ~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 4555566666 6678899999999999999987521 0112221111 233333333
Q ss_pred -----------HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 143 -----------ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 143 -----------~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
.++..+.+|..+++.+.+.... ..-|.-+.+-|+..|+++.|.++|.+-.. ++--|
T Consensus 732 a~~~~kaieaai~akew~kai~ildniqdqk~~----s~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai 798 (1636)
T KOG3616|consen 732 ANCLIKAIEAAIGAKEWKKAISILDNIQDQKTA----SGYYGEIADHYANKGDFEIAEELFTEADL---------FKDAI 798 (1636)
T ss_pred hhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc----cccchHHHHHhccchhHHHHHHHHHhcch---------hHHHH
Confidence 3445566778888888776432 22477788889999999999999877532 56778
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 047392 212 NALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~ 231 (258)
..|.++|+|++|.++-.+..
T Consensus 799 ~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHhccccHHHHHHHHHHhc
Confidence 88999999999988876654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.5 Score=35.95 Aligned_cols=92 Identities=11% Similarity=-0.040 Sum_probs=74.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
+-.-+...|++++|..+|+-...-... +..-|-.|=-+|-..|++++|+..|....... +-|...+=.+=.++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 445567899999999999998776421 44456677778888899999999999988765 35777777788899999
Q ss_pred CCHHHHHHHHHHhHhC
Q 047392 218 GNFNKARFLLEQMELP 233 (258)
Q Consensus 218 g~~~~a~~~f~~M~~~ 233 (258)
|+.+.|++.|+.-+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.13 Score=32.93 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHh
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMEL 232 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~f~~M~~ 232 (258)
..+|..+=..+...|++++|+..|++..+.. +-+...|..+=.++.+.| +.++|.+.|++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666666666666666666665532 224445555555566666 56666666665543
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.2 Score=34.34 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC------
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL------ 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~------ 184 (258)
.++|.+.|++......-.++ ...|..+-..+.+.|+.++|...+++..+.. | -+...+..+-..|...|+
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--P-KQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHHHHcCChHhHhh
Confidence 66999999987643211122 4678888899999999999999999988763 2 134466777777777776
Q ss_pred --------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 185 --------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 185 --------~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
+++|.+++++... .+...|..++..+...|+
T Consensus 128 ~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 128 DQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcCc
Confidence 3555555555544 233335555555555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.23 Score=42.62 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
|+..-|-.-|.+|+..+++++-..+... + -.| +-|-..+.+|.+.|+..+|.....++ ++..
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s---k-KsP----IGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~ 267 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS---K-KSP----IGYEPFVEACLKYGNKKEASKYIPKI----------PDEE 267 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C-CCC----CChHHHHHHHHHCCCHHHHHHHHHhC----------ChHH
Confidence 4444455555555555555544443221 1 111 22555555555555555555444441 1133
Q ss_pred HHHHHHHcCCHHHHHHH
Q 047392 210 VINALCRVGNFNKARFL 226 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~ 226 (258)
-+..|.++|++.+|.+.
T Consensus 268 rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 268 RVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 44455555555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.3 Score=40.72 Aligned_cols=123 Identities=13% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHcc--------CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 112 INKATEFYHWVERFFHFFHNE-VTCKEMGIVFARG--------NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
.+.|.++|++..+ ..|+- ..|..+..++... .++.++.+..++....... ..+...|.++--.....
T Consensus 358 ~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~-~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 358 LNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL-NVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC-cCChHHHHHHHHHHHhc
Confidence 6788999988774 33663 2333332222111 1123334444332221111 12445788876666778
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.|++-.... |...||
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~----P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR----PGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCchH
Confidence 99999999999999865 788899999999999999999999999988744 665554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.1 Score=38.32 Aligned_cols=127 Identities=10% Similarity=0.009 Sum_probs=68.8
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Q 047392 99 PAAYRNPQKVTLGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177 (258)
Q Consensus 99 ~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~ 177 (258)
++-.++-|+....-++|+..|+...+ +-|. ...|+.+-+-|....+...|.+-++.-.+-. ..|-..|-.|=.
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQ 406 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhH
Confidence 45555556666668999999998773 2243 4567777788888888888887777766542 113333444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+|.-.+...-|+-.|++-.... +-|...|.+|=++|.+.++.++|.+.|.+-..
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 4444444444444444333211 12334444444444444444444444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=34.08 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCC-cC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG--NGEL-VT-TSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~-~~-~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.+|+.+-..|.+.|++++|.+.|++..+-. .++. ++ ..+++.+-.+|...|+.++|++.+++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468888899999999999999998876541 2221 22 5678999999999999999999998864
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.4 Score=37.49 Aligned_cols=129 Identities=11% Similarity=0.117 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc--cCC----hHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR--GNN----VKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~--~g~----~~~a~~~~~~m~~~g~~~-~~~~~t~~~li~~~~~~g~ 184 (258)
+++.+++++.|. +.|++.+..+|-+....... ..+ ...|.++|+.|++...-. .++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 668889999998 55888888777663333333 222 457999999999985322 2355678888776 3333
Q ss_pred ----hHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 185 ----VNEALATFYRMKQFRCRPDVY-AYNVVINALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 185 ----~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~---~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
.++++..|+.+...|+..+-. -+-+-|-+++.... +..+.++++.+.+.|++ +....|.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k--ik~~~yp 221 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK--IKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc--ccccccc
Confidence 467788888888888766543 34444444443322 55789999999999965 5544444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.33 Score=31.27 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=50.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
..+.+.+++++|.++++.+.+.+ | .+...|...-.++.+.|++++|.+.|++..+.+ |+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--P-DDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--c-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence 56788999999999999998874 2 155678888889999999999999999998753 55444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.6 Score=41.94 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVF--ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+..|+....+..+++ |+. .|..++.++ .|.|+.++|..+++.....+ ++ |..|...+-.+|-..|+.++|.
T Consensus 25 fkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CC-chHHHHHHHHHHHHHhhhhHHH
Confidence 568888888877665 443 355556655 48899999999998886654 22 8889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++++.... -|+..-...+..+|+|.+++.+..+.--+|-+ .++ -+...|-++++.+.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~p--k~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFP--KRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC--cccchHHHHHHHHHH
Confidence 999998764 48888888999999999987764444434433 221 344556666665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.28 Score=31.26 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEALATFYRMKQ 197 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a~~l~~~M~~ 197 (258)
+...|..+-..+.+.|++++|...|.+..+.. | -+...|..+-.+|.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--P-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--T-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888889999999999999999998874 2 25668888999999999 79999999988764
|
... |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.8 Score=36.55 Aligned_cols=89 Identities=6% Similarity=-0.006 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.+.|-.+..+..+. --.++...+-+...-+...|+...|..-+++..+.+-. +...-.....+|.+.|++.+...+
T Consensus 134 ~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 134 EDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred HHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhccHHHHHHH
Confidence 44555555555532 11345555666667777888888888888888776532 345788999999999999999999
Q ss_pred HHHHHhCCCCCCH
Q 047392 192 FYRMKQFRCRPDV 204 (258)
Q Consensus 192 ~~~M~~~g~~p~~ 204 (258)
+..|.+.|.--|.
T Consensus 210 l~~L~ka~~l~~~ 222 (400)
T COG3071 210 LPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHccCCChH
Confidence 9999988865443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.52 Score=40.63 Aligned_cols=122 Identities=8% Similarity=0.099 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH-HHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL-IKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l-i~~~~~~g~~~~a~~ 190 (258)
+++.+-..+.++ .+-.--|...|| +-++.+-.|...+|+++|-......+ -|.++|-++ ..||.++|+.+-|++
T Consensus 375 FddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i---kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 375 FDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI---KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh---hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 444444444444 333344555555 56777778888888888866543322 256677654 467888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVI-NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
++-.|.-. .+..+.--+| +-|-+++.+--|-+.|+++.... |+..-|.
T Consensus 450 ~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD----P~pEnWe 498 (557)
T KOG3785|consen 450 MMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILD----PTPENWE 498 (557)
T ss_pred HHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC----CCccccC
Confidence 87776532 2333333333 55668888888888888887754 6666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.7 Score=36.93 Aligned_cols=118 Identities=9% Similarity=0.199 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-
Q 047392 112 INKATEFYHWVERFFHF--FHNEVTCKEMGIVFARGNNV----KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL- 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~--~p~~~~y~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~- 184 (258)
...|.++|+.|++.+.+ .++-.++.+|+.. ...++ +.++..|+.+.+.|+...-+...-+.++..+-....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 67999999999976644 3555667777665 34443 568888999999888765454444444443333322
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHhHh
Q 047392 185 -VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-----FNKARFLLEQMEL 232 (258)
Q Consensus 185 -~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-----~~~a~~~f~~M~~ 232 (258)
+.++.++++.+++.|+++....|.. |..++-.++ ++...++.+++.+
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~-lGlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPT-LGLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccH-HHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 4589999999999999998887743 444443333 3444555555544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.49 Score=45.18 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=87.0
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL--GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~--~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
...+++.+|....+.+.++. | |. .|..+++++ .+.|+.++|.++++.....+.. |..|..++-.+|-+.|..
T Consensus 20 ld~~qfkkal~~~~kllkk~--P--n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--P--NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--C--Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 35678899999999988773 3 43 477777776 5789999999999999876655 999999999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++|..+|++..+.. |+..-...+..+|.|.++
T Consensus 94 d~~~~~Ye~~~~~~----P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 94 DEAVHLYERANQKY----PSEELLYHLFMAYVREKS 125 (932)
T ss_pred hHHHHHHHHHHhhC----CcHHHHHHHHHHHHHHHH
Confidence 99999999999755 998888888888888664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.2 Score=38.86 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=95.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHH-HHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 109 TLGINKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKE-MSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.-+++.|..+|.+..+. +..+ ++..++++|.-+| .++.+-|.++|+- |+.-|- +..--..-++-+..-++-.
T Consensus 379 ~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d----~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 379 AEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD----SPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred hhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCcch
Confidence 34489999999999854 5555 8999999999998 5677889999976 444442 2223466778889999999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|..+|++....++.||- ..|..+|+-=..-|++..+.++=+++..
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999988776654 7899999999999999999999888764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.42 Score=41.17 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=48.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV-INALCR 216 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l-i~~~~~ 216 (258)
+-+++.-..+++++...++.++.--..- |.+.|| +..+++..|...+|+++|-......+ -|-.+|-++ -.+|.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~Nd--D~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTND--DDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 3334444445666666666655542222 443333 45666666777777777655543322 234444433 355666
Q ss_pred cCCHHHHHHHHHHhHh
Q 047392 217 VGNFNKARFLLEQMEL 232 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~ 232 (258)
++..+.|+++|-.|-.
T Consensus 441 nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT 456 (557)
T ss_pred cCCchHHHHHHHhcCC
Confidence 6677777666655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.2 Score=37.34 Aligned_cols=118 Identities=13% Similarity=0.172 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCC
Q 047392 134 TCKEMGIVFARG-NNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-----RPD 203 (258)
Q Consensus 134 ~y~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-----~p~ 203 (258)
++..+-..|-.. |++++|.+.|++-.+- | .+..-..++..+...+.+.|++++|.++|++....-. ..+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 566666667777 8899988888765443 3 2222234677888999999999999999999876432 223
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCCCCHHHHHHHHHHHH
Q 047392 204 VYA-YNVVINALCRVGNFNKARFLLEQMELP--GFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 204 ~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~--~~~~~pd~~ty~~li~~~~ 252 (258)
+.. |-..+-++...|+...|.+.|++.... ++.-.........||.+|-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 322 223333556679999999999998764 3321122345566666653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.7 Score=37.61 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPDVY 205 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~~ 205 (258)
-|...|.+|-.+|.+.+++++|.+.|..-...| +.+...|..|-+.|-+.++.++|...|+.-.+ .|..-+..
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 345667777777777777777777777766665 22334566777777777777777666665443 23222211
Q ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 206 AY--NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 206 ty--~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
.+ --|-.-+.+.+++++|...-.+....+ +...-=+.|++.+.
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~----~e~eeak~LlReir 551 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKGE----TECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcCC----chHHHHHHHHHHHH
Confidence 11 113344556666766666555554422 44444555555444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.87 Score=40.86 Aligned_cols=78 Identities=6% Similarity=0.106 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+++|.+=|++... +.|. ...|--+-.+.-|.+++++++..|++-+++ ++- -..+||-.-..+...+++++|.+
T Consensus 410 ~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~--~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 410 YEEAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPN--CPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CchHHHHHHHHHhhHHhHHHHHH
Confidence 5555555555431 2222 223333333344555555555555555554 333 22245555555555555555555
Q ss_pred HHHHH
Q 047392 191 TFYRM 195 (258)
Q Consensus 191 l~~~M 195 (258)
-|+..
T Consensus 484 ~YD~a 488 (606)
T KOG0547|consen 484 QYDKA 488 (606)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.28 Score=41.51 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
|...+..+-..++..-....+++.+...+-.++..- ..+.-+.+||--++.- =+.++++-++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccc
Confidence 445555556666666555666666666665554431 1222233333333332 256677777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..|++.+|+.|.+.++..+|.++..+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766666544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.5 Score=31.86 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=68.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
...++|+.+|++-.. .|.... ...+-.+-+.+-..|++++|..++++.....-....+.....-+--++...|+.++
T Consensus 15 G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 15 GREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred CCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 346799999999874 466544 22344466778899999999999999887632111111122223347788899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
|++.+-.-.. ++...|.--|..|+.
T Consensus 94 Al~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 94 ALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 9999877654 455567666666653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.61 Score=41.46 Aligned_cols=118 Identities=15% Similarity=0.060 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY-NVV 210 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-~~l 210 (258)
...|...|+..-|..-++.|..+|-+..+.|+ ...++..++++|.-+| .|+...|.+||+-=... .||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 44677788888888888999999999988883 2338888999998776 46777888888763332 3555554 566
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCC--HHHHHHHHHHHHHcCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSYCKYGM 256 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--~~ty~~li~~~~~~g~ 256 (258)
+.-+.+.++-+.|..+|+.-+.+ +.-+ ...|..||+-=.+.|+
T Consensus 473 l~fLi~inde~naraLFetsv~r---~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER---LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH---HHHhhhhHHHHHHHHHHHhhcc
Confidence 67777888888888888844332 1122 3467777766555554
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.2 Score=33.51 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
.|++++-.+.-+++.....+++.+..-. +.-..+-.+|.+++.+.++... ---+..+|.-|++.+.+++..-|..|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555542221 0001122245555555544444 33445555555555555555555555
Q ss_pred HHHHHHc
Q 047392 211 INALCRV 217 (258)
Q Consensus 211 i~~~~~~ 217 (258)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5555444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.8 Score=40.80 Aligned_cols=87 Identities=23% Similarity=0.129 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhCC-CC-----C
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFLLEQMELPG-FR-----C 237 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~f~~M~~~~-~~-----~ 237 (258)
+...++.+-.+|.+.|++++|+..|++-.+. .||. .+|..+-.+|.+.|+.++|.+.+++..+.+ .. -
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 5567899999999999999999999997764 4774 469999999999999999999999988742 10 1
Q ss_pred CCCH------HHHHHHHHHHHHcCC
Q 047392 238 PPDV------YTYTILISSYCKYGM 256 (258)
Q Consensus 238 ~pd~------~ty~~li~~~~~~g~ 256 (258)
.||. ..|..++....+.|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 1333 257778888877774
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.89 Score=38.11 Aligned_cols=79 Identities=8% Similarity=0.080 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA 206 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 206 (258)
..++..++..+...|+.+.+.+.++++.... .-+...|..||.+|.+.|+...|+..|+.+.+ .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 4467777888888888888888888888774 23666788888888888888888888887754 688888888
Q ss_pred HHHHHHH
Q 047392 207 YNVVINA 213 (258)
Q Consensus 207 y~~li~~ 213 (258)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7766666
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.73 Score=39.55 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=69.7
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
.++......+.+..|.-|...|....|.++-.+.+ .|+..-|-..|.+|+..|+|++-.++... .-.+
T Consensus 170 ~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsP 237 (319)
T PF04840_consen 170 KYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSP 237 (319)
T ss_pred HhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCC
Confidence 33433334466667778888888888888766652 23777899999999999999987776443 1245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
+-|--++..|.+.|+.++|..+..+
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHh
Confidence 8899999999999999999988877
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.95 E-value=4 Score=37.60 Aligned_cols=132 Identities=16% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHH--------HHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 113 NKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLK--------EMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
..|.+++...-+. . |. ...-=+++.-....|+++.|.+++. .+.+-+..| . +-.+++..|.+.
T Consensus 358 ~ka~e~L~~~~~~--~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~--~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 358 KKAIELLLQFADG--H-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--G--TVGAIVALYYKI 430 (652)
T ss_pred hhhHHHHHHHhcc--C-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--h--HHHHHHHHHHhc
Confidence 3455555554422 1 22 2334455666788999999999998 555555544 4 578888999999
Q ss_pred CChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 183 GLVNEALATFYRMKQF--RCRPDVYAYNVVINA----LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~----~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
++-+.|-.++++-... .-.+.....++++.- =-++|+-++|..+++++.+..- +|..+...++.+|++.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYARL 505 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHhc
Confidence 9988888888886541 122333444444443 3478999999999999998532 8899999999999874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.93 E-value=4.2 Score=36.63 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
-..|++..|.++|+.-.+- .|+...|++.|+.=.+.+.++.|..|+++..- +.|++.+|--...-=-++|++..
T Consensus 152 E~LgNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHhcccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 3457788888888777553 33777788888888888888888888888765 34888888766666667888888
Q ss_pred HHHHHHHhHh
Q 047392 223 ARFLLEQMEL 232 (258)
Q Consensus 223 a~~~f~~M~~ 232 (258)
|..+|+.-++
T Consensus 226 aR~VyerAie 235 (677)
T KOG1915|consen 226 ARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHH
Confidence 8888877665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.7 Score=38.70 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHHccC--C---hHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHhc--------CChHHHHHHH
Q 047392 127 HFFHNEVTCKEMGIVFARGN--N---VKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEE--------GLVNEALATF 192 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g--~---~~~a~~~~~~m~~~g~~~~~~-~~t~~~li~~~~~~--------g~~~~a~~l~ 192 (258)
+.+.|...|...+.|..... . .++|.++|++..+.. | + ...|..+..+|... ++++.+.+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--P--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--C--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 45678899999999865432 2 668999999998863 3 3 23344433333222 1233444444
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 193 YRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 193 ~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
++.... ....+...|.++--.....|++++|...+++....+ |+...|..+-+.|...|+.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCH
Confidence 443332 234456778777555667899999999999999854 9988999999999988874
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.6 Score=42.78 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.++|++.. -+....+.||.- .+.++.|.++-++..+ | . +|+.+-.+-...|.+.+|.+-
T Consensus 1064 yEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n~----p--~--vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCNE----P--A--VWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhCC----h--H--HHHHHHHHHHhcCchHHHHHH
Confidence 456666665543 233344444432 2455555555544311 1 2 466666666666666666655
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|-+- -|+..|.-+|+...+.|.+++-.+++.-.+++.- +|.+. +.||-+|++.|++
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~--E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR--EPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc--Cccch--HHHHHHHHHhchH
Confidence 5443 2555666666666666666666665554444432 24433 3566666665543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=93.35 E-value=6.5 Score=36.20 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=73.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
++.-+-+.|-+.|+.++|++.+++-++.. |. .+..|-.--..|-+.|++++|.+..++-..... -|-..=+-....
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT-LVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHH
Confidence 44555667778899999999998877752 31 144677777788888999999988888876432 356666677788
Q ss_pred HHHcCCHHHHHHHHHHhHhCCC
Q 047392 214 LCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
+.|+|++++|.+++......+.
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCC
Confidence 8889999999998888877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.5 Score=36.74 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYT 245 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~ty~ 245 (258)
+++.++..+..+|+.+.+.+.+++..... +-|...|-.+|.+|.+.|+...|...|+++.+ .|+. |-..+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~--P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID--PAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC--ccHHHHH
Confidence 68999999999999999999999998753 46889999999999999999999999998865 5755 9888877
Q ss_pred HHHHH
Q 047392 246 ILISS 250 (258)
Q Consensus 246 ~li~~ 250 (258)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.8 Score=36.59 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc-----------------CH--HHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-----------------TT--STV 172 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----------------~~--~t~ 172 (258)
.++|++-|+...+..|+.| ...||..+..|. .|+...|++...+++++|+.-.| |. ..-
T Consensus 160 yEaAvqkFqaAlqvsGyqp-llAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQP-LLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 7899999999887778876 668997776664 67899999999999999854322 11 123
Q ss_pred HHHHHH-------HHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHH
Q 047392 173 TCLIKV-------LGEEGLVNEALATFYRMK-QFRCRPDVYAYNVV 210 (258)
Q Consensus 173 ~~li~~-------~~~~g~~~~a~~l~~~M~-~~g~~p~~~ty~~l 210 (258)
+.++.+ +-+.|+.+.|.+-+-.|- ......|++|...+
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 444444 456789999999888885 23344566665443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.2 Score=32.65 Aligned_cols=81 Identities=16% Similarity=-0.031 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
...|..+...+...|++++|...|++.....-.+ ...+|..+=..+.+.|+.++|...+++.....- ....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP---FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CcHHHHHH
Confidence 3457778888888999999999999997643222 235788888899999999999999999886431 33445666
Q ss_pred HHHHHH
Q 047392 247 LISSYC 252 (258)
Q Consensus 247 li~~~~ 252 (258)
+-..+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 655555
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=3.2 Score=35.59 Aligned_cols=119 Identities=14% Similarity=0.003 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++-|+.+|..+. +.|+. +..-|+.+--+|.-.+.++-++.-|.+-...-..|..-..+|-.|=......||+.-|.+-
T Consensus 340 PE~AlryYRRiL-qmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 340 PEMALRYYRRIL-QMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred hHHHHHHHHHHH-HhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 455555555554 33442 2223333333444445555555544444433322322222344444444445555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
|+-...+. .-+...+|.|--.-.+.|++++|..+++--...
T Consensus 418 frlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 418 FRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55544332 123456777766677888888888888877653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.1 Score=32.08 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVV 210 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~l 210 (258)
...|+.-...+ +.|++++|.+.|+.+..+--...-.....-.|+.+|-+.|++++|...+++..+.. -.|+ +-|-..
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34455444444 57889999999999988732222344466778999999999999999999987742 2333 345555
Q ss_pred HHHHHH
Q 047392 211 INALCR 216 (258)
Q Consensus 211 i~~~~~ 216 (258)
+.|++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 566554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.63 Score=43.86 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
|..|+.+.+.+.++. .-..-|..+-..|+..|+++.|+++|.+- + .|+.-|.+|.+.|+|++|.++
T Consensus 748 w~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~--~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEA---------D--LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhc---------c--hhHHHHHHHhccccHHHHHHH
Confidence 566677766665321 22334777888999999999999999652 4 388899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f 227 (258)
-++.. |-.-....|-+--.-+-++|++.+|+++|
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 87653 32234444544444455666666666655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.7 Score=35.06 Aligned_cols=90 Identities=7% Similarity=0.024 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+.++|+..|+.....+ |+. ..+--+-..|...|++++|...|+.+.+.-..-......+-.+..+|...|+.+
T Consensus 158 ~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 158 RQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred CHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3678898998887543 443 345567788889999999999999998762110011223444566778999999
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 047392 187 EALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ 205 (258)
+|.++|++..+. .|+..
T Consensus 235 ~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 235 KAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHHH--CcCCH
Confidence 999999998764 25543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=3.5 Score=34.69 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
-+.+.+++.+|...|.+-++-. | -|.+-|.---.+|++.|.++.|++=.+.-.... +--..+|..|=-+|.-.|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--P-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--C-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 3567889999999999988753 1 267778888999999999999998777766521 11235677777888889999
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
++|.+.|++-.. +.|+-.+|..=|+.-
T Consensus 166 ~~A~~aykKaLe----ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE----LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc----cCCCcHHHHHHHHHH
Confidence 999999998886 449988887766543
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=92.12 E-value=4 Score=30.68 Aligned_cols=97 Identities=10% Similarity=0.151 Sum_probs=76.7
Q ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 047392 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-----RPDVYAYNVVINALCRVGN-FNKARFLLEQ 229 (258)
Q Consensus 156 ~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-----~p~~~ty~~li~~~~~~g~-~~~a~~~f~~ 229 (258)
.-|.+++..+..-....|+++.-.+..+++.....+++.+..... ..|..+|++++.+.++..- ---+..+|+-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 345656666644556789999999999999999999988854211 4678899999999977766 4468889999
Q ss_pred hHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 230 MELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 230 M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
|++.+.. +...-|..||+++.+.
T Consensus 106 Lk~~~~~--~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIE--FTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCC--CCHHHHHHHHHHHHcC
Confidence 9998855 9999999999998765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.7 Score=40.39 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=66.1
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
-++.+....+....+..-..+..+.+.-++..|.-+.++|-..|++++|+++|......-.--+...|--+-.+|-..|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 44455555566666666666666555555666778888888888888888888888765545556677777777777888
Q ss_pred HHHHHHHHHHhHhC
Q 047392 220 FNKARFLLEQMELP 233 (258)
Q Consensus 220 ~~~a~~~f~~M~~~ 233 (258)
.++|.+.|+.....
T Consensus 465 ~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=92.09 E-value=6 Score=36.42 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
++.-|-..|-..|+.++|++..++-.++ .|+ +.-|.+--..+-+.|++++|.+.+++-..... -|...=+-..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL---ADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh---hhHHHHHHHHH
Confidence 4455677788889999999999988775 466 55666667778889999999999988887654 56666677777
Q ss_pred HHHHcCCC
Q 047392 250 SYCKYGMQ 257 (258)
Q Consensus 250 ~~~~~g~~ 257 (258)
.+.|+|++
T Consensus 271 y~LRa~~~ 278 (517)
T PF12569_consen 271 YLLRAGRI 278 (517)
T ss_pred HHHHCCCH
Confidence 77777765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=92.04 E-value=12 Score=36.14 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=89.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
++.++|.+++.+.-+. -+.+...|-+|-..|-..|+.+++...+ |......|+ |..-|-.+-+.....|++++|.
T Consensus 153 g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 3367999999887643 3456778999999999999999887665 334444442 4457888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-.|.+..+.. +++...+--=...|-+.|+...|++-|.+|.+..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~ 271 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD 271 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC
Confidence 9999988753 3444444455567778899999999999998754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.7 Score=30.97 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
......+++.+... + ..+...+|.+|..|++.. .++..+.+.. .. +.+....++..|-+.+-++++..+
T Consensus 23 ~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~-----~~yd~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 23 LEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN---KS-----NHYDIEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---cc-----ccCCHHHHHHHHHHcCcHHHHHHH
Confidence 55556666665533 3 245666777777777653 2334444432 11 111245567777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+.++.. |...+..+.+. ++.+.|.+++.+- -|...|..++..+..
T Consensus 92 ~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 92 YKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--------NNPELWAEVLKALLD 137 (140)
T ss_pred HHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--------CCHHHHHHHHHHHHc
Confidence 776643 23333444444 6777777776651 345578877776653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.071 Score=39.75 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=69.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
.+|+.+.+.+.++....+++.+...+... +....|.++..|++.++.++..++++... + .-...++..|-+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~--~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~ 82 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKEN--NPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEK 82 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccccc--CHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHh
Confidence 35666777777888888888887665333 56678888888888877777777777221 1 222345555556
Q ss_pred cCCHHHHHHHHHHhHhCCC------------------CCCCCHHHHHHHHHHHHHcCCC
Q 047392 217 VGNFNKARFLLEQMELPGF------------------RCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~------------------~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.|.+++|..++.++....- .-.+|...|..+++.|...+..
T Consensus 83 ~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred cchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 6666666666555432110 0125677888888888766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.5 Score=41.48 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++.|.++-+... ....|+.+-.+-.+.|.+.+|.+-|-+ .. |...|.-+|+...+.|.+++-.
T Consensus 1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyik---ad-----Dps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIK---AD-----DPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHh---cC-----CcHHHHHHHHHHHhcCcHHHHH
Confidence 34666666654443 234588888888888888888776633 21 2335888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f 227 (258)
+.+...++..-+|.+.+ .||-+|++.+++.+.+++.
T Consensus 1154 ~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 88887777766676664 7888888888877766653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=91.64 E-value=8.1 Score=33.23 Aligned_cols=131 Identities=9% Similarity=0.022 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh--HHH
Q 047392 113 NKATEFYHWVERFFHFFHNE-VTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV--NEA 188 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~--~~a 188 (258)
++|+++..+.... .|+- .+|+.--..+.+.| .+++++++++++.+...+ +..+|+..-..+.+.|+. +++
T Consensus 54 erAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 54 PRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHHcCchhhHHH
Confidence 3788888887632 2433 34554444455556 578999999999887422 444677665556666653 678
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
..++++|.+.. +-|..+|+-.--.+.+.|+++++.+.++++.+.+. -|...|+..--.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~---~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV---RNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---CchhHHHHHHHHHHh
Confidence 88888887643 34778888888888888999999999999998764 345555554444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=7.2 Score=32.52 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=82.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-----HHhcCChHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-----LGEEGLVNEALA 190 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-----~~~~g~~~~a~~ 190 (258)
+.++++..+ ..-+-+..--..|.+.-.+.|+.+.|...|++..+..-.. |..+++.++.. |.-.+++..|..
T Consensus 197 ~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 197 VDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred HHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccchhHHHHhhhhhheecccchHHHHH
Confidence 444555443 2223445555666666678899999999999887664333 55566666543 455678888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
.|++..... ..|.+.-|.=--+..-.|+..+|.+..+.|++.- |...+-++++-.+
T Consensus 274 ~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~----P~~~l~es~~~nL 329 (366)
T KOG2796|consen 274 FFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD----PRHYLHESVLFNL 329 (366)
T ss_pred HHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC----CccchhhhHHHHH
Confidence 888876532 1244444433333334689999999999999854 7777766655443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.44 E-value=8.4 Score=37.61 Aligned_cols=130 Identities=11% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
...++.++...-...+ -|.+..+.|-+.|.--|+++.++.+.+.+......-..-...|--+-.+|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 5566666665554433 34556777888888999999999999988776422212233577788889999999999999
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 192 ~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|.+-.+. .+|. -.+--|-+.+.+.|+++.+...|+...... ||-.--..++.
T Consensus 330 Y~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG 383 (1018)
T KOG2002|consen 330 YMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILG 383 (1018)
T ss_pred HHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHH
Confidence 8777653 3444 334567788999999999999999998754 66544333333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.22 E-value=6.3 Score=35.62 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-----CCcCHHHHHHHHHHHHhcCChH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-----ELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+++++..|++..++ ++-....||..-..+.-.+++++|.+.|+.-++---. ..+...+--+++ .+-..+++.
T Consensus 444 ~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~ 520 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHH
Confidence 66666666666543 3344456666666677777777777777665543110 000111111111 122446677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|.+++.+-.+.. +-....|-+|-..-.+.|++++|.++|++-..
T Consensus 521 ~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 521 QAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777776665532 12234466666666677777777777766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.15 E-value=7.8 Score=32.61 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE---GLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~---g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
-|...|-.|-..|.+.|+.+.|..-|.+-.+- -+.+++ .+..+-.++... ....++.++|+++.... +-|+.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 46778999999999999999999999887665 233224 455444444333 34668999999998743 234455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 207 y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
-.-|-..+...|++.+|...|+.|.+.. |.-..+..+|..-
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ 270 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHH
Confidence 5555677889999999999999999865 6666677776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.9 Score=37.42 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhC-CC---C-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 112 INKATEFYHWVERFF-HF---F-HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~-~~---~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+.+|...|+.....- .+ + .-..+++-|-+.|-+.++.++|...|++-.... +- |..||+++-..|...|+++
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k--~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PK--DASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CC--chhHHHHHHHHHHHhcChH
Confidence 778888888765211 01 1 134567888899999999999999999987763 22 6778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
.|.+-|.+-.. +.||-++-..++..+..
T Consensus 507 ~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 507 KAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999998764 57998888888775544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.43 E-value=9.8 Score=32.04 Aligned_cols=138 Identities=9% Similarity=0.096 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc-c-CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR-G-NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~-~-g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+.+|+.+|+...-+..+.-|...-..|++.... . .+...-.++.+-+... .+-.++..+.-++|..+++.+++.+-.
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST-FSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhcccHHHHH
Confidence 667777777433222455677777778877765 2 2344556666666543 222345557888899999999999988
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----hHhCCCCCCCCHHHHHHHHHHHH
Q 047392 190 ATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQ-----MELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 190 ~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~-----M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
++++.-... +..-|...|..+|......|+..-+..+.++ +++.|+. -+...-..+-+.+-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~--v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVD--VTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCc--CCHHHHHHHHHHHH
Confidence 888887654 5667888899999999999998877776654 2444543 44444444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.33 E-value=4 Score=38.46 Aligned_cols=127 Identities=11% Similarity=0.012 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
..+|+..|+... .|.-+|-+|+..|+..+|.++..+-.++ ++|..-|..+-+.....--+++|+++
T Consensus 414 tksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 414 TKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccChHHHHHHHHH
Confidence 556666666655 3777899999999999999998887763 33666788888777666667888888
Q ss_pred HHHHHhC-----CCC----CC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-H
Q 047392 192 FYRMKQF-----RCR----PD------------------VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-T 243 (258)
Q Consensus 192 ~~~M~~~-----g~~----p~------------------~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-t 243 (258)
++.-... |.. +| ..||=..=.+..+.++++.|.+.|..-... .||-. .
T Consensus 480 sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL----~Pd~~ea 555 (777)
T KOG1128|consen 480 SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----EPDNAEA 555 (777)
T ss_pred hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----CCCchhh
Confidence 7764321 110 11 122222222233678889999999988873 37655 5
Q ss_pred HHHHHHHHHHcCC
Q 047392 244 YTILISSYCKYGM 256 (258)
Q Consensus 244 y~~li~~~~~~g~ 256 (258)
||.+=.+|.+.|+
T Consensus 556 WnNls~ayi~~~~ 568 (777)
T KOG1128|consen 556 WNNLSTAYIRLKK 568 (777)
T ss_pred hhhhhHHHHHHhh
Confidence 9999999988775
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.3 Score=29.87 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+-++.+-...+.|++....+.+.+|-|.+++..|.++|+-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333334444444445555555555555455555555555544443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.99 E-value=8.4 Score=36.43 Aligned_cols=132 Identities=8% Similarity=-0.041 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.++.+-|+.-.+-... ...+|-.+=.+..+.+++..|.+-|..-..- .|+ +...||.+-.+|.+.|+-.+|...
T Consensus 501 fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd-~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPD-NAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCC-chhhhhhhhHHHHHHhhhHHHHHH
Confidence 44555555443322111 1234444445555778888888888776543 221 445799999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+.|-.+.+ .-+...|-.-+....+.|.+++|.+.+.+|...... .-|...-..++..
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~-~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK-YKDDEVLLIIVRT 632 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh-cccchhhHHHHHH
Confidence 99998876 456666777788889999999999999998764332 1244444444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.87 E-value=9.5 Score=31.69 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCH-HHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDV-YAY 207 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~-~ty 207 (258)
...|+.-+..+ +.|++..|..-|....+..-.- .+|. +-=|-.++...|++++|-.+|..+.+ .+-.|-. .+.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 33688777665 5788999999999999884221 1232 44478899999999999999999976 3333332 556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 208 NVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
--|-.+..+.|+.++|...|++..+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777788999999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.86 E-value=12 Score=35.19 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG----NGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
++.++.+++.-.. -+...-+-.|..+++.+++++|-+.+....... ..-+.+...|+-+-+-.++..+.-.
T Consensus 154 Pets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~ 228 (835)
T KOG2047|consen 154 PETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ 228 (835)
T ss_pred hHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc
Confidence 4567777766552 233336778888999999999888887765541 1112355556666666666655443
Q ss_pred HHHHHHHHHh-CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 188 ALATFYRMKQ-FRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 188 a~~l~~~M~~-~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
-+.+=.-|+. .+.-+|. .-|++|-+.|.+.|+++.|.++|++-.+.- -.+.-|..+.++|++
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v----~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV----MTVRDFTQIFDAYAQ 293 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh----eehhhHHHHHHHHHH
Confidence 3333222222 1233454 357888888888888888888888877643 344456666666654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.78 E-value=11 Score=34.95 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH----HHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL----IKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l----i~~~~~~g~~~~ 187 (258)
.++|+..-.++.. +.+-+...+..=+-++.+.+++++|+.+.+.- + -..+++.. ..|.-+.++.|+
T Consensus 28 ~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~-----~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 28 YEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---G-----ALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c-----hhhhcchhhHHHHHHHHHcccHHH
Confidence 5688888888773 33455666777777888889999888555432 1 11123333 344456788999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 188 ALATFYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
|++.++ |+.++.. +-..=-+.|-+.|++++|.++|+.+..++.
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 998888 4444443 444444667788999999999999977664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.74 E-value=5.1 Score=31.18 Aligned_cols=101 Identities=8% Similarity=-0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF---RCRPDVYAYN 208 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~---g~~p~~~ty~ 208 (258)
...+..+..-|++.|+.+.|.+.|.++.+....+..-...+-.+|......+++..+.....+.+.. |-..+...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4568889999999999999999999999986555444446778888889999999999888887652 2222222211
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHhHh
Q 047392 209 VVINAL--CRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 209 ~li~~~--~~~g~~~~a~~~f~~M~~ 232 (258)
....|+ ...|++..|-+.|-+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222332 246889999999887754
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.64 E-value=4.3 Score=28.21 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+.+-++.+......| +..+.++-+.+|-|..++.-|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP--~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVP--EPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444333434 33345555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.56 E-value=15 Score=33.83 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.+..++|-++....+-++|...++.|=--|--.|++++|.+.|+...... | -|..+||-|=..++...+-++|+.-
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--P-nd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--P-NDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--C-chHHHHHHhhHHhcCCcccHHHHHH
Confidence 667788898888777755666667777667777899999999999987763 2 2777899999999999999999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhH---hCC----CCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQME---LPG----FRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~--ty~~li~~~~~~g~~~~a~~~f~~M~---~~~----~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++..+. .|+-+ =||.= -+|...|.+++|.+.|-+.. ..+ ..+.++...|.+|=.+++-.++.
T Consensus 487 Y~rALqL--qP~yVR~RyNlg-IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 487 YNRALQL--QPGYVRVRYNLG-ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHhc--CCCeeeeehhhh-hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999873 46542 24433 45788999999998886543 321 11234556787776666655543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.53 E-value=4.7 Score=29.92 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
-+..-++...+.|+-|+-.++..+..+. -.+++.-.-.+-.+|.+.|+..++-+++.+-.++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4556677777777777777777777642 246666667777778888888888888877777775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.93 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
+|..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555666666666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.7 Score=35.60 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=61.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
..+++..+..++++.-..| +..+.+..-...-+.|+.++|.+=|++..+ .|+.|- ..||.-+..| +.|+.+.
T Consensus 124 se~Dl~g~rsLveQlp~en-----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyas 196 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN-----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYAS 196 (459)
T ss_pred ccccCcchHHHHHhccCCC-----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHH
Confidence 4566667777777765433 333444444445688999999999999887 566664 5688777655 5678999
Q ss_pred HHHHHHHhHhCCC
Q 047392 223 ARFLLEQMELPGF 235 (258)
Q Consensus 223 a~~~f~~M~~~~~ 235 (258)
|.++..|++++|+
T Consensus 197 ALk~iSEIieRG~ 209 (459)
T KOG4340|consen 197 ALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998886
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.92 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYR 194 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~ 194 (258)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.90 E-value=21 Score=33.72 Aligned_cols=125 Identities=11% Similarity=0.003 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++-..+|++... .++....-|-....-+..+|++.+|..++.+..+.. |+ +...|-+-+..-....++++|..+
T Consensus 566 ~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 566 RESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 3444555555543 344445556566677778888888888888877753 32 566788888888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|.+-.. ..|+...|.--+..---.++.++|.++.++-.+. -|+..-+-.|
T Consensus 641 lakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~f~Kl~lm 690 (913)
T KOG0495|consen 641 LAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS----FPDFHKLWLM 690 (913)
T ss_pred HHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCchHHHHHH
Confidence 988876 3477777766666666678889999988887763 2776644333
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.90 E-value=13 Score=31.31 Aligned_cols=100 Identities=10% Similarity=0.008 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.-.|+.+-+...++-.++..+--.+|..+++.+++.+..++++.-... ..|..|...|...|+.....|+..-+.++.+
T Consensus 184 alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~-~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 184 ALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPN-SVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhccc-CCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345565566666667788888999999999999999999999887654 3355577789999999999999998888887
Q ss_pred H-----HHhCCCCCCHHHHHHHHHHH
Q 047392 194 R-----MKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 194 ~-----M~~~g~~p~~~ty~~li~~~ 214 (258)
+ .++.|+..+...-..|=..|
T Consensus 263 ~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 263 DGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred CCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 6 35566666665544444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=6.9 Score=30.07 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=66.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047392 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (258)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~ 221 (258)
+-..|++++|..+|.-+.--++. |..-|-.|-.+|-..|++++|...|...-..+. -|...+=-+=.++...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 45689999999999988775432 344577788888888999999999998765432 23333444557888899999
Q ss_pred HHHHHHHHhHhC
Q 047392 222 KARFLLEQMELP 233 (258)
Q Consensus 222 ~a~~~f~~M~~~ 233 (258)
.|+..|+....+
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988874
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.1 Score=24.58 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+|+.|=..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788899999999999999999854
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=16 Score=35.98 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=54.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
++.......++..+..+...|.+-+- +...+-.|-.||-+.|+.++|..+++++.+.. +-|....|-+-..|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~----~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE----NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 33334444444444444444544332 23356667777788888888888888887755 44666666666666666
Q ss_pred CCHHHHHHHHHHhHh
Q 047392 218 GNFNKARFLLEQMEL 232 (258)
Q Consensus 218 g~~~~a~~~f~~M~~ 232 (258)
++++|++++.+-..
T Consensus 164 -dL~KA~~m~~KAV~ 177 (906)
T PRK14720 164 -DKEKAITYLKKAIY 177 (906)
T ss_pred -hHHHHHHHHHHHHH
Confidence 77776666655543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=6.5 Score=32.29 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=46.7
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALC 215 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~---~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~ 215 (258)
.+.+.|++++|.+.|+++...- |... ..- -.+..+|-+.++.++|...|++..+. .-.|+. -|...+.|.+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~y--P~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~ 115 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRY--PFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLT 115 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHh
Confidence 3456889999999999998863 2222 222 24567788899999999999998763 223333 3444555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.88 E-value=5.1 Score=37.93 Aligned_cols=106 Identities=11% Similarity=0.000 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.-+++++....++|....-.+-+--+.-+...|+..+|.++-.+.+ .| |-..|=-=+.+++..+++++-+++-+
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ip--dKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IP--DKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Cc--chhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 3445566666666666666677777888888888888888776653 23 66667777888888888888888777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.++. ++-|--.+.+|.+.|+.++|..++.+..
T Consensus 740 skks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 740 SKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred ccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 7753 4556667778888888888888876654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.41 E-value=12 Score=28.65 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=59.3
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
..-.+.++.+++..+++.|.-- .|. +...++...+ +.+.|++.+|+++|+++.+.+ |... |..-+-++|-..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p-~~kALlA~CL~~ 90 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFP-YAKALLALCLYA 90 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCCh-HHHHHHHHHHHH
Confidence 3345778999999999999875 342 3344555554 478899999999999998753 3333 444444555444
Q ss_pred CHHHHHHHH-HHhHhCCCCCCCCHH
Q 047392 219 NFNKARFLL-EQMELPGFRCPPDVY 242 (258)
Q Consensus 219 ~~~~a~~~f-~~M~~~~~~~~pd~~ 242 (258)
.-|..++.+ +++...+-. |+..
T Consensus 91 ~~D~~Wr~~A~evle~~~d--~~a~ 113 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGAD--PDAR 113 (160)
T ss_pred cCChHHHHHHHHHHhcCCC--hHHH
Confidence 444444444 556666622 5544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.41 E-value=2.2 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+++.|-..|...|++++|.+++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=86.40 E-value=8.7 Score=30.46 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCR--- 216 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~--- 216 (258)
.+.+.|++++|.+.|+++..............-.+..++-+.|++++|...|++..+. .-.|. .-+...+.|.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHh
Confidence 3456788888888888888763221122234556778888888888888888887652 22222 223333333332
Q ss_pred ----------cCCHHHHHHHHHHhHhC
Q 047392 217 ----------VGNFNKARFLLEQMELP 233 (258)
Q Consensus 217 ----------~g~~~~a~~~f~~M~~~ 233 (258)
.+...+|...|+++...
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred CccchhcccChHHHHHHHHHHHHHHHH
Confidence 12244677777777664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=86.39 E-value=12 Score=27.93 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=44.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~ 200 (258)
..+..+..+.+.|+-++-.+++.++.+.+ .+ +....-.+-.+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EI--NPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34556677888888888888888886543 23 555677888899999999999999998888775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.36 E-value=17 Score=32.03 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=58.2
Q ss_pred HHHHccCChHHHHHHHHHHHHc-----CCCC-------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 140 IVFARGNNVKGLWDFLKEMSRR-----GNGE-------LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~-----g~~~-------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
+.+.+.|++..|..-|+..... ++.+ ..-..+++.|.-+|.|.+++.+|++.-++....+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3456666666666665553222 0000 1122357777777788888888777777766543 2333221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
=-==.++...|+++.|+..|+++.+ +.|+-..-+.=|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k----~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK----LEPSNKAARAELI 332 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH----hCCCcHHHHHHHH
Confidence 1112455666777888888888776 3366554443333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.47 E-value=2.3 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777888888899999999999988874
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.40 E-value=17 Score=28.87 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=78.8
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF---RCR 201 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~---g~~ 201 (258)
.....|++..--.|-.++.+.|+..+|...|++-...-+-- |....-.+-.+....+++..|...++...+. +-.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~--d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH--DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC--CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 33455777777778899999999999999999876543333 6556667777777789999999999987763 345
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
||.. -.+-..+.-.|+..+|+.-|+.....-
T Consensus 160 pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 160 PDGH--LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCch--HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 5543 345567788889999999998888743
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.20 E-value=8.7 Score=31.12 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ--FRCRPDVYAYNVVI 211 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~--~g~~p~~~ty~~li 211 (258)
|.+.-++.+.+.+.+.++....++-.+.. +- |.-+-..+++-||-.|++++|..-++-.-. ....+-..+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Pt--da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PT--DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-Cc--cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 45666778888888888888887776663 22 455677888889999999988776665543 23445566677666
Q ss_pred HH
Q 047392 212 NA 213 (258)
Q Consensus 212 ~~ 213 (258)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=17 Score=35.85 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
-+...+-.+-.+|-+.|+.++|..+++++.+-. .-|...-|-+-..|+.. ++++|.+++.+..+.
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------- 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------- 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----------
Confidence 344577788899999999999999999999886 23777899999999999 999999999887653
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+...++..++.++|.++....
T Consensus 179 ----~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 179 ----FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred ----HHhhhcchHHHHHHHHHHhcC
Confidence 666667777777777777643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=85.01 E-value=26 Score=31.87 Aligned_cols=119 Identities=10% Similarity=0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHh
Q 047392 112 INKATEFYHWVERFFHFFHN-----EVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK-VLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-----~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~-~~~~ 181 (258)
=+.+++++.+-.+..++.-. ...|...+..++- ....+.|.++++++.++ -|+...|.-.-. .+..
T Consensus 204 R~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 204 RELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----YPNSALFLFFEGRLERL 279 (468)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH
Confidence 34666666665543333222 2356666666654 45678899999999887 236545544333 3566
Q ss_pred cCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 182 EGLVNEALATFYRMKQFR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g---~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|++++|++.|++..... -+....+|--+.-+++-.+++++|.+.|.++.+..
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 799999999999765311 12233444555556778899999999999999754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=84.92 E-value=1.1 Score=33.14 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~ 179 (258)
.|.-..|..+|..|.++|-+| | .|+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pP--d--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPP--D--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCC--c--cHHHHHHHh
Confidence 344555677777777777666 5 377766543
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=84.24 E-value=32 Score=33.85 Aligned_cols=122 Identities=10% Similarity=0.073 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhhC---CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CcCHHHHHHHHHHHHh
Q 047392 111 GINKATEFYHWVERFF---HF-FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGE-LVTTSTVTCLIKVLGE 181 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~---~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~t~~~li~~~~~ 181 (258)
++++|...+++..... |- .....++..+-..+...|++++|.+.+++..+. |... ......+..+-..+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3556666666654211 11 011234444556677788888888887765442 2111 0122334455556677
Q ss_pred cCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 182 EGLVNEALATFYRMKQF--RCRP--DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~--g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|++++|...+++.... ...+ ...++..+-......|+.++|.+.+.+...
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 79999998888886542 1112 233444455567788999999888887744
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.17 E-value=3.1 Score=23.03 Aligned_cols=29 Identities=31% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999998864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=83.87 E-value=38 Score=33.32 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcC
Q 047392 111 GINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g 183 (258)
++++|...+++......- .+ ...++.+-..+...|++++|...+++.....-. +..-..+++.+-..+...|
T Consensus 467 ~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 467 DPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 467888888876532111 11 234455666677899999999998887653111 1111234556666788899
Q ss_pred ChHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQ----FRCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~--p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|.+.+++... .|.. + ....+..+-..+...|++++|...+.+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 99999999888654 2321 1 223344455566778999999999988755
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=83.67 E-value=28 Score=29.97 Aligned_cols=133 Identities=11% Similarity=-0.010 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN--VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++++.++++... -+.+..+|+----.+.+.|+ .+++.++++++.+... -|.++|+-.-..+.+.|++++++
T Consensus 88 l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp---kNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 88 LEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA---KNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhhhHHHHH
Confidence 46888888887643 22344455543333444454 3667888888887642 27778998888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRV---GN----FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~---g~----~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+.++++.+.+. -|...|+-.-..+.+. |. .+++.++..+++...- =|...|+.+-..+..
T Consensus 163 ~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P---~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 163 EYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP---RNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC---CCcCHHHHHHHHHhc
Confidence 99999987653 4556666655555443 22 2456666666665431 233456655555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=83.43 E-value=24 Score=32.15 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=53.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVIN 212 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~ 212 (258)
|-.++.+.|+.++|.+.|.+|.+.. +..-+.-+...||.++...+...++..++.+-.+... +.-..+|+..+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 4455668899999999999997653 2222334688899999999999999999999865332 223466777553
|
The molecular function of this protein is uncertain. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.64 E-value=21 Score=29.93 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
..++++..+--.|.+.-....+++.++..-+ .+.+.-+.|...-...||.+.|...|+..++..-..|..+++.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4567788887888888889999999886533 36667777888888889999999999998876666788888777754
Q ss_pred -----HHHcCCHHHHHHHHHHhHhCC
Q 047392 214 -----LCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 214 -----~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|.-..++-.|...|.+.....
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD 282 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC
Confidence 334677888999998887754
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.47 E-value=6.6 Score=33.56 Aligned_cols=83 Identities=10% Similarity=-0.049 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFF--HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~--~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
++++...+-+.+... -+.|+...|. .++-| -.-+.+++..++..=+..|+-| |.+|++.||+.+.+.+++.+|.
T Consensus 80 idd~~~~LyKlRhs~~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqYGiF~--dqf~~c~l~D~flk~~n~~~aa 155 (418)
T KOG4570|consen 80 IDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQYGIFP--DQFTFCLLMDSFLKKENYKDAA 155 (418)
T ss_pred hhHHHHHHHHHhcCcchhhhccccHHH-HHHHH-HccChHHHHHHHhCcchhcccc--chhhHHHHHHHHHhcccHHHHH
Confidence 667777776665431 2334433333 22222 2335668888888888888877 9999999999999999999988
Q ss_pred HHHHHHHhC
Q 047392 190 ATFYRMKQF 198 (258)
Q Consensus 190 ~l~~~M~~~ 198 (258)
.+..+|...
T Consensus 156 ~vvt~~~~q 164 (418)
T KOG4570|consen 156 SVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHH
Confidence 888887653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=82.43 E-value=39 Score=30.84 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH--HHHHHHH
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY--TYTILIS 249 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~--ty~~li~ 249 (258)
..|-.+.-+.|+.++|.+.|.+|.+. ...-+......||.++...+...++..++.+--+... |... +|+..+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l---pkSAti~YTaALL 339 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL---PKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC---CchHHHHHHHHHH
Confidence 34666667889999999999999753 2222445677899999999999999999999765432 4444 4776553
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.17 E-value=17 Score=28.22 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+..+-+-|++.|+.++|.+.|.++.+....+.. ..+-.+|....-.|++..+....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5888999999999999999999999987555544 3467788888889999999888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=82.02 E-value=20 Score=27.30 Aligned_cols=81 Identities=5% Similarity=-0.066 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++|..+|+-... +.|.... |-.|-.++-..|++++|.+.|.....-.. - |...+-.+=.++.+.|+.+.|.
T Consensus 50 ~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d--dp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 50 EFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-D--APQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred CHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-C--CchHHHHHHHHHHHcCCHHHHH
Confidence 37799999999873 2355443 44466666678999999999999877652 2 4456777888999999999999
Q ss_pred HHHHHHHh
Q 047392 190 ATFYRMKQ 197 (258)
Q Consensus 190 ~l~~~M~~ 197 (258)
+-|+....
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 99998765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.78 E-value=34 Score=29.72 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~t~~~li~~~~~~g~~~~a~ 189 (258)
..+|-..++++.+ .++.|...++-.=.+|...|+.+.-...+++.... -.++.. +.+-...--|+-.+|-+++|+
T Consensus 119 ~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 119 HHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4466677777764 56778888888888888888888888888777654 122111 222222333445678888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
+.-++-.+-+ +.|.-.-.+.-+.+--.|+..++.+++.
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 8777765532 2233333333333334444444444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.68 E-value=40 Score=30.48 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=95.3
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
.-+++.|..+|-+..+..-..+++..|+++|.-+| .|+...|..+|+-=... + |+..+. -+--+.-+.+-++-+.|
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y-~~kyl~fLi~inde~na 485 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLY-KEKYLLFLIRINDEENA 485 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHH-HHHHHHHHHHhCcHHHH
Confidence 34478999999999854337899999999999988 56677788888752222 1 222222 34456667888999999
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
..+|+.-... +.-+ -..|-.+|+.=..-|++..+..+=++|.. +.|-..+-.+..+-|.
T Consensus 486 raLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e----~~pQen~~evF~Sry~ 546 (660)
T COG5107 486 RALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE----LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH----HcCcHhHHHHHHHHHh
Confidence 9999944321 1112 46799999999999999988888888876 3366666666665554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.41 E-value=16 Score=25.52 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 159 (258)
.+.|+.....+.+++|-|.+++..|.++|+-.+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.29 E-value=7 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=14.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444444444444444444444444333
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] | Back alignment and domain information |
|---|
Probab=81.08 E-value=33 Score=29.03 Aligned_cols=109 Identities=8% Similarity=-0.103 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHF---FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~---~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...|.+.|+.......- ..+...-..++....+.|..++...+++...... +......++.+.+-..+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~-----~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST-----SPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS-----THHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC-----CHHHHHHHHHhhhccCCHHHH
Confidence 46888999988753222 3455566677888888888776556665555442 566789999999999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHH
Q 047392 189 LATFYRMKQFR-CRPDVYAYNVVINALCRVGNF--NKARFLL 227 (258)
Q Consensus 189 ~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~--~~a~~~f 227 (258)
.++++.....+ +++.. ...++.++...+.. +.+++++
T Consensus 221 ~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHH
Confidence 99999988854 54444 34555566644443 6666664
|
The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.39 E-value=18 Score=25.50 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047392 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227 (258)
Q Consensus 148 ~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f 227 (258)
.++|..+-+.+...+- ....+--+-+..+...|++++|..+.+.+ +.||.+.|-+|-. .|.|..+.+..-+
T Consensus 21 HqEA~tIAdwL~~~~~---~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKGE---SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 5677777777666542 12333344556678889999999988877 5799999866533 4788888888888
Q ss_pred HHhHhCCCCCCCCHHHHHH
Q 047392 228 EQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 228 ~~M~~~~~~~~pd~~ty~~ 246 (258)
.+|..+|- |...+|-.
T Consensus 92 ~rla~sg~---p~lq~Faa 107 (115)
T TIGR02508 92 NRLAASGD---PRLQTFVA 107 (115)
T ss_pred HHHHhCCC---HHHHHHHH
Confidence 89988774 66655543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.36 E-value=22 Score=26.51 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=69.4
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHH---HHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVIN---ALCR 216 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~---~~~~ 216 (258)
+++..|+++.|.+.|.+-..- .+- +...||.--.++--.|+.++|++=+++-.+ .|-+ +-....+.+. .|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-ccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 467889999999999887664 222 444699999999999999999988888766 3433 2222222221 1334
Q ss_pred cCCHHHHHHHHHHhHhCCCC--------CCCCHHHHHHHHH
Q 047392 217 VGNFNKARFLLEQMELPGFR--------CPPDVYTYTILIS 249 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~--------~~pd~~ty~~li~ 249 (258)
.|+-+.|..=|+.-.+.|-+ +.|-...+|-|+.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa 168 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLA 168 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHH
Confidence 67777777766655544421 3477777887774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 258 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 3e-12 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 3e-07 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 3e-12
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA---LATFYRMKQFRCRPDVYAYNVVINA 213
+ K + A L + +Q R + YN V+
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
R G F + ++L ++ G PD+ +Y + +
Sbjct: 175 WARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCMGRQDQD 216
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 3e-07
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 2/108 (1%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + L + +L+T ++ +G E + + +K
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTI 246
PD+ +Y + + R LEQM G + +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 258 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.93 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.88 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.45 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.43 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.79 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.77 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.76 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.75 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.56 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.53 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.45 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.44 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.44 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.43 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.42 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.36 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.31 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.31 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.31 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.3 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.29 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.28 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.19 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.19 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.17 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.16 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.14 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.1 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.06 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.04 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.04 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.03 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.0 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 97.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.97 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.92 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.91 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.9 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.89 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.88 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.88 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.73 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.59 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.57 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.56 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.51 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.49 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.44 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.4 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.27 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.22 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.21 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.18 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.16 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.14 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.11 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.11 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.09 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.09 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.07 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.02 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.97 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.95 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 96.95 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.92 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.9 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 96.89 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.87 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.85 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 96.83 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 96.81 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 96.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 96.79 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 96.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 96.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 96.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.6 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.58 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.43 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.32 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.3 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.29 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.22 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.16 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 95.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 95.33 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.25 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 95.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 94.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.47 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 93.68 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 93.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 93.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 93.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 93.26 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 93.07 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 92.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 92.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.29 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 91.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 91.52 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 91.28 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 90.58 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.35 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 89.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 89.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 88.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 87.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 87.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 87.28 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 87.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.35 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.33 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 85.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 85.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 84.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 84.23 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 83.84 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 83.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.22 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=245.71 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=114.1
Q ss_pred HHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcC
Q 047392 92 NNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN---------VKGLWDFLKEMSRRG 162 (258)
Q Consensus 92 ~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~g 162 (258)
.+..+.+++..++.. +|+++|++|.+ .|++||..|||+||.+|++.+. +++|.++|++|.+.|
T Consensus 29 l~~~id~c~k~G~~~-------~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVL-------EALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHTTTSCCHH-------HHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHH-------HHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 444566666666544 77777777774 4777777777777777776654 466777777777777
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 163 ~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+.| |.+|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|.++|++|.+.|+. ||..
T Consensus 101 ~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--Pd~~ 176 (501)
T 4g26_A 101 VVP--NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--PEEP 176 (501)
T ss_dssp CCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--CCHH
T ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CCHH
Confidence 766 777777777777777777777777777777777777777777777777777777777777777777744 7777
Q ss_pred HHHHHHHHHHHcCCC
Q 047392 243 TYTILISSYCKYGMQ 257 (258)
Q Consensus 243 ty~~li~~~~~~g~~ 257 (258)
||++||.+|++.|++
T Consensus 177 ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 177 ELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhCCCH
Confidence 777777777777764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=236.42 Aligned_cols=163 Identities=12% Similarity=0.074 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhCccCCCCcccc--ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047392 87 ADNIANNVLVLGPAAYRNPQKV--TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164 (258)
Q Consensus 87 ~~~~~~~~l~~g~~~~~~~~~~--~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 164 (258)
++..+||+++.+++..+..... ...++.|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 59 pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 59 LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 4467889998887765543322 334789999999999 5699999999999999999999999999999999999998
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 165 ~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
| |.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|++.|.. |+..||
T Consensus 138 P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~--ps~~T~ 213 (501)
T 4g26_A 138 P--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ--VSKSTF 213 (501)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--BCHHHH
T ss_pred C--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC--cCHHHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999965 999999
Q ss_pred HHHHHHHHHc
Q 047392 245 TILISSYCKY 254 (258)
Q Consensus 245 ~~li~~~~~~ 254 (258)
++++..|+..
T Consensus 214 ~~l~~~F~s~ 223 (501)
T 4g26_A 214 DMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHSH
T ss_pred HHHHHHHhcC
Confidence 9999999864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=213.78 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHH---cCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSR---RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
--..|||+||++||++|++++|.++|++|.+ .|+.| |++|||+||+|||+.|++++|.++|++|++.|+.||++|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3467999999999999999999999988864 47777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 207 YNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 207 y~~li~~~~~~g~-~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
||+||+++|+.|+ .++|.++|++|...|+. ||..||+++++++.+.+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~--PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLK--LQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCC--SHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCC--CChhhcccccChhhHHH
Confidence 9999999999998 57899999999999955 99999998888777653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-24 Score=200.31 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHh--hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047392 87 ADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVER--FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164 (258)
Q Consensus 87 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~--~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 164 (258)
..+.++|+++.|++..+... +|.++|++|.+ ..|+.||.+|||+||+|||+.|++++|.++|++|++.|+.
T Consensus 125 ~~~~TynaLIdglcK~G~le-------eA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLP-------LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHH-------HHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCCHH-------HHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 34789999999999999765 99999999863 2489999999999999999999999999999999999998
Q ss_pred CCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH
Q 047392 165 ELVTTSTVTCLIKVLGEEGLV-NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243 (258)
Q Consensus 165 ~~~~~~t~~~li~~~~~~g~~-~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t 243 (258)
| |++|||+||+|+|+.|+. ++|.++|++|.+.|+.||.+|||++|.++.+.+-++.+.+++.++.-..- ..|...|
T Consensus 198 P--DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~-~~~~~~t 274 (1134)
T 3spa_A 198 P--DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ-LPPPVNT 274 (1134)
T ss_dssp C--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCC-CCCCCCC
T ss_pred C--cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCC-Ccccccc
Confidence 8 999999999999999985 78999999999999999999999999988887555555444333322110 0122455
Q ss_pred HHHHHHHHHHcC
Q 047392 244 YTILISSYCKYG 255 (258)
Q Consensus 244 y~~li~~~~~~g 255 (258)
...|.+-|.+.|
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 555556565544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=118.16 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|+++|+++... .+.+..+|+.+..+|.+.|++++|.++|++|.+.. +. +..+|+.+..+|.+.|++++|.++
T Consensus 423 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 423 HDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY--DPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666665532 22355566666666666666666666666665542 11 455666666666666666666666
Q ss_pred HHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQF----RCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~----g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++|.+. +..|+ ..+|+.+..+|.+.|++++|.++|+++.+.+ + .+..+|..+..+|.+.|+.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T--NDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S--CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C--CChHHHHHHHHHHHHhCCH
Confidence 6666543 55555 5566666666666666666666666665543 1 3556666666666666653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=116.42 Aligned_cols=141 Identities=13% Similarity=-0.053 Sum_probs=120.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..+|+.+..+|.+.|++++|
T Consensus 386 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---GTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---TCSHHHHHHHHHHHHHTCHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcCCHHHH
Confidence 34477999999998753 234678999999999999999999999999988742 2667899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCC--HHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPD--VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd--~~ty~~li~~~~~~g~~ 257 (258)
.++|++|.+.. +.+..+|+.+...|++.|++++|.++|++|... +.. |+ ..+|..+..+|.+.|++
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--SGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHhcCH
Confidence 99999998753 347899999999999999999999999999875 544 88 78999999999999975
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-08 Score=83.49 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.|++.... -+-+..+|..+...+.+.|++++|.+.|+++.+.+ | -+..+|+.+..+|.+.|++++|.+.
T Consensus 219 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 219 FDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--P-HFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--S-SCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555665555432 12246677778888888888888888888887763 2 1345788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|+++.+. .+.+..+|+.+...+.+.|++++|.+.|+++.... + .+..+|..+...|.+.|+.
T Consensus 294 ~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 294 YNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-P--EFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-T--TCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CcHHHHHHHHHHHHHcCCH
Confidence 8888764 24577788888888888888888888888887643 1 3466788888888888775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-07 Score=71.82 Aligned_cols=141 Identities=9% Similarity=-0.056 Sum_probs=77.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG-NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...++|.+.|++.... .+.+..++..+...+... |++++|.+.++++.+.+..| .+...+..+..+|.+.|++++|
T Consensus 56 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 56 KVNDKAQESFRQALSI--KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS-CHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc-chHHHHHHHHHHHHHcCCHHHH
Confidence 3466666666665532 123455566666666666 66666666666665521111 1244566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.+.|+++.+.. +.+...+..+...+.+.|+.++|.++|++.....-. .+...+..+...+.+.|+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--LQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCc
Confidence 66666665432 223555666666666666666666666666553310 244445555444455443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-07 Score=80.32 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH---HHHHHHHHH----------
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT---STVTCLIKV---------- 178 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~t~~~li~~---------- 178 (258)
.++|++.|+++.+.. +.+...|..+...+.+.|++++|.+.|+++.+.. | .+. ..+..+...
T Consensus 76 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 76 SKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--P-SENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--C-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544321 1234444555555555555555555555554432 1 011 334444332
Q ss_pred --HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 179 --LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 179 --~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.... ..+..+|..+...|.+.|+
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC
Confidence 455555555555555554321 2244455555555555555555555555554432 0234455555555555554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-07 Score=65.13 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.++|+++... .+.+...|..+...+...|++++|.+.++++.+.+. .+...+..+...+...|++++|.+
T Consensus 16 ~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 90 (136)
T 2fo7_A 16 DYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIE 90 (136)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHhcCHHHHHH
Confidence 367999999998753 234677888889999999999999999999988742 256678899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|+++.+.. +.+..++..+...+.+.|+.++|.+.|+++....
T Consensus 91 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 91 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999998753 3467888899999999999999999999988643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-07 Score=76.74 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=114.0
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|+++.+. -+.+..+|..+...+.+.|++++|.+.|+++.+.. +. +..+|+.+...+.+.|++++|.
T Consensus 251 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~--~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT--HADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp TCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc--cHHHHHHHHHHHHHcCCHHHHH
Confidence 4478999999998853 22357789999999999999999999999998873 33 6778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. |+ ...|..+-..+.+.|+
T Consensus 326 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 326 RLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHhHHHHHHHccC
Confidence 9999998742 4467899999999999999999999999999743 54 5567777666666553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-07 Score=66.06 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=99.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.|..+...+.+.|++++|.++++++.+.+. .+..++..+...+...|++++|.+.|+++...+ +.+...|..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 467788889999999999999999988642 256688999999999999999999999998754 3467788899999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.+.|++++|.++|+++....- .+..++..+...+.+.|+.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHccH
Confidence 9999999999999999987541 4677888888889888864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=81.34 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=93.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|++.|+++.+. .+.+...+..+...+.+.|++++|.+.|+++.+.. + .+..+|+.+..+|.+.|++++|
T Consensus 156 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-N--DNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-C--SCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHcCCHHHH
Confidence 34467888888887643 23466777778888888888888888888877653 1 2566778888888888888888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHH------------HHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-----HHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPD-VYAYNVV------------INALCRVGNFNKARFLLEQMELPGFRCPPD-----VYTYTILISS 250 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~-~~ty~~l------------i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-----~~ty~~li~~ 250 (258)
.+.|+++... .|+ ...+..+ ...+.+.|++++|..+|+++.... |+ ...|..+...
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHH
Confidence 8888887653 233 3334333 566777777777777777777632 54 3456666666
Q ss_pred HHHcCCC
Q 047392 251 YCKYGMQ 257 (258)
Q Consensus 251 ~~~~g~~ 257 (258)
+.+.|++
T Consensus 305 ~~~~g~~ 311 (450)
T 2y4t_A 305 FSKDEKP 311 (450)
T ss_dssp HHTTTCH
T ss_pred HHHCCCH
Confidence 7666653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-07 Score=77.45 Aligned_cols=145 Identities=11% Similarity=0.005 Sum_probs=117.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|+++.....-.++..+|..+...+.+.|++++|.+.|++..+.. | .+..+|..+...|.+.|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--P-NDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 34789999999987543222258899999999999999999999999998863 2 25678999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC-CC-------CHHHHHHHHHHHHHcCCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PP-------DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~-~p-------d~~ty~~li~~~~~~g~~~ 258 (258)
+.|++..+.. +.+...|..+-..+.+.|++++|...|++.....-.. .| ...+|..+..+|.+.|+.+
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999998743 3467889999999999999999999999997643100 01 1578999999999998753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-07 Score=72.42 Aligned_cols=142 Identities=13% Similarity=-0.003 Sum_probs=106.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.+..| .+...+..+...|.+.|++++|
T Consensus 84 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD--SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP-ERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 345778888888876432 2467778888888888899999999988887622222 2455778888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +.+...|..+...+.+.|+.++|..+|++..... ..+...+..+...+.+.|+.
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 161 KEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCH
Confidence 99998887643 2357788888888889999999999998888753 14566777777777777764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-07 Score=76.47 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHH----HHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV----TCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~----~~li~~~~~~g~~~ 186 (258)
..++|++.|++ +.+...+..+...+.+.|+.++|.+.|+++.+.. | +. +. .+.+..+...|+++
T Consensus 116 ~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p--~~-~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 116 NPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E--DA-TLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp CHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--TC-HHHHHHHHHHHHHHCTTHHH
T ss_pred CHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c--Cc-HHHHHHHHHHHHHhCchHHH
Confidence 36688888876 3677888889999999999999999999998874 3 32 22 23334445568999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+|..+|+++.+. .+.+...|+.+-.++.+.|++++|...|++.....- -|..++..++..+...|+.
T Consensus 184 eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p---~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 184 DAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS---GHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCC
Confidence 999999999876 456888899999999999999999999999887541 3566888888888888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.6e-07 Score=67.88 Aligned_cols=137 Identities=12% Similarity=0.007 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|+++... .+.+...|..+...+.+.|++++|.+.+++..+.. + .+...+..+...|...|++++|.+.
T Consensus 24 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 24 YSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-P--DNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56888888877532 23467778888888889999999999999887763 1 2566788888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++..+.. +.+...+..+...+.+.|++++|.++|++.....- .+...|..+...|.+.|+.
T Consensus 99 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 99 LIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHcCCH
Confidence 99887642 34677888888888899999999999999887541 4567788888888887764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-07 Score=78.64 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=117.7
Q ss_pred ccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 105 PQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 105 ~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
.+......++|.+.|+++.....-.++..+|..+...+.+.|++++|.+.|++..+.. + .+..+|+.+..+|.+.|+
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-P--EDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHcCC
Confidence 3333455889999999998653222368899999999999999999999999998874 2 257789999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC---C------CCCCHHHHHHHHHHHHHcC
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF---R------CPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~---~------~~pd~~ty~~li~~~~~~g 255 (258)
+++|.+.|++..+.. +-+..+|..+-..|.+.|++++|...|++.....- . ...+...|..+-.++...|
T Consensus 263 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 999999999998753 33588899999999999999999999999976320 0 0013678899988888887
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 342 ~~ 343 (365)
T 4eqf_A 342 QP 343 (365)
T ss_dssp CH
T ss_pred cH
Confidence 64
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-06 Score=68.88 Aligned_cols=138 Identities=16% Similarity=0.063 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... .+.+...|..+...+.+.|++++|.+.+++..+.. +. +...+..+...|.+.|++++|.+.
T Consensus 73 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 73 LERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-ME--NGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CC--SHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC--CHHHHHHHHHHHHHhccHHHHHHH
Confidence 56888888887743 23467788888888889999999999999888764 22 556788888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
++++.+.. +.+...|..+...+.+.|++++|.+.|++.....- .+..+|..+...|.+.|+.+
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---GHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHccCHH
Confidence 99887642 34677888888888899999999999998877541 45677888888888888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-06 Score=69.79 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=93.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 109 TLGINKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
....++|.+.|++... .+..| +...|..+...+.+.|++++|.+.+++..+... .+...+..+...|.+.|++++
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHH
Confidence 4457888888888764 22334 455677777788888888888888888777641 245678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|.+.|++..+.. +.+...+..+...+.+.|+.++|.++++++.... |+...+..+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY----PGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCCHHHHHH
Confidence 888888877642 3456677777788888888888888888887754 655544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-06 Score=72.92 Aligned_cols=139 Identities=10% Similarity=0.017 Sum_probs=117.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|.+.|++.... .+.+...+..+...+.+.|++++|.+.+++..+... .+..+|..+...|.+.|++++|
T Consensus 151 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHH
Confidence 34478999999998754 234678899999999999999999999999988741 2567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-------------HHHHHHHHHHHHHcC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-------------VYTYTILISSYCKYG 255 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-------------~~ty~~li~~~~~~g 255 (258)
.+.|++..+.. +.+..+|..+...+.+.|++++|.+.|++..... |+ ..+|..+...|.+.|
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ----VGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999987743 3467889999999999999999999999998743 44 778999999999988
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 301 ~~ 302 (327)
T 3cv0_A 301 RP 302 (327)
T ss_dssp CH
T ss_pred CH
Confidence 74
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-07 Score=72.23 Aligned_cols=118 Identities=12% Similarity=-0.087 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFF--HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~--p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++|++.|+++.+..... .+..+|..+...+...|++++|.+.|++..+.. | .+..+|..+..+|...|++++|.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--P-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--C-CcHHHHHHHHHHHHHccCHHHHH
Confidence 566777777666331111 134456666666667777777777777766653 1 14556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
+.|++..+.. +.+...|..+-..+.+.|++++|...|+++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777766532 224566666667777777777777777776653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-07 Score=69.94 Aligned_cols=138 Identities=11% Similarity=0.024 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|++... ..+.+...+..+...+.+.|++++|.+.+++..+... .+..++..+...|...|++++|.+
T Consensus 38 ~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 38 DYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDS---SAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ----CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHhccHHHHHH
Confidence 35688888888874 2335688888999999999999999999999988742 266789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.|+++.+.. +.+...|..+...+.+.|++++|.++|++..... ..+...+..+...|.+.|+.
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 113 MFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCH
Confidence 999998753 3467889999999999999999999999998754 14677888888889888875
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-06 Score=66.15 Aligned_cols=119 Identities=11% Similarity=-0.026 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...++|.+.|+++.. .+..|+ ...|..+...+.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|
T Consensus 91 ~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 91 NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHcCCHHHH
Confidence 344555555554442 111121 33444444444555555555555555444321 1233444445555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+.+++..+..-..+...+..+...+.+.|+.+.|..+++.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555544321112334444444444445555555555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.1e-07 Score=73.50 Aligned_cols=132 Identities=9% Similarity=0.035 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|++.++++... +..| +...+..+-..+.+.|++++|.+.+++ +. +...+..+...|.+.|+.++|.+
T Consensus 81 ~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~--~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 81 RDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD--SLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC--SHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 45999999998733 4445 455566666889999999999999987 23 66789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAY---NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty---~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.|+++.+.. |+...+ .+++..+...|++++|..+|+++.... + .+...|+.+-.++.+.|++
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p--~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-S--PTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-C--CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-C--CcHHHHHHHHHHHHHcCCH
Confidence 999998763 665322 223344445689999999999999863 2 6788899999999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-06 Score=57.96 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...|..+...+.+.|++++|.+.++++.+.. + .+..++..+...|.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 5678888899999999999999999998864 2 256789999999999999999999999998753 34678899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHc
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKY 254 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~ 254 (258)
..+.+.|++++|...|+++.... | +...+..+-..+.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 99999999999999999998754 4 344555555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-06 Score=72.14 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=102.0
Q ss_pred HhhhhhHHHHHHHHHHHHhCcc------CCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 047392 79 KQRILKKEADNIANNVLVLGPA------AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~g~~------~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 152 (258)
...+..+++...+..++..... ..+..+......++|++.|++.... -+.+..+|..+...+.+.|++++|.
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHccccHHHHH
Confidence 3444555555555555543211 1112222245588888888887643 2344777888888888888888888
Q ss_pred HHHHHHHHcCCC------------------------------------------CC-cCHHHHHHHHHHHHhcCChHHHH
Q 047392 153 DFLKEMSRRGNG------------------------------------------EL-VTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 153 ~~~~~m~~~g~~------------------------------------------~~-~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+.|+++.+.... |. .+..+|..+...|.+.|++++|.
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888765310 00 03445666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
+.|++..+.. +.+..+|+.+...|.+.|++++|...|++..... |+ ..+|..+-..|.+.|+.
T Consensus 234 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 234 DAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCCH
Confidence 6666665532 2345566666666666666666666666666532 33 55566666666666654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-08 Score=86.44 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|+++++...+. .++..+.+.|+.+|.+.|+++++.++++ .| +..+|+.+-+.|...|++++|...
T Consensus 77 ~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~p--n~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 77 WEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GP--NNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC------------------CTTTHHHH
T ss_pred HHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CC--cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555544433321 2334555556666666666665555552 12 333555555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|..+ ..|+.+..++++.|++++|.+.+.++. +..||..++.+|+..|+
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKE 192 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTC
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCc
Confidence 5554 135555555555555555555555551 34455555555555554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.55 E-value=8.7e-06 Score=68.61 Aligned_cols=142 Identities=13% Similarity=0.026 Sum_probs=85.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----------------------
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---------------------- 166 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---------------------- 166 (258)
....++|++.|++.... .+.+..+|..+...+.+.|++++|.+.++++.+......
T Consensus 111 ~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 34477777777776643 134566777777777777777777777777776542100
Q ss_pred -----------------------c---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 167 -----------------------V---TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 167 -----------------------~---~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
| +..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 0 34456666666666666666666666665432 23455666666666666666
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++|...|++..... ..+...|..+-..|.+.|+
T Consensus 268 ~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 268 EEAVAAYRRALELQ---PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCC
Confidence 66666666665532 0234556666666666555
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-06 Score=66.56 Aligned_cols=137 Identities=12% Similarity=-0.041 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG-----------NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~ 179 (258)
..++|++.|++..+.. +-+...|..+-..+.+. |++++|...|++..+.. | -+...|..+-..|
T Consensus 54 ~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P-~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 54 LVNPALENGKTLVART--PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--P-RYAPLHLQRGLVY 128 (217)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHH
Confidence 3679999999887432 23567888888889999 99999999999998864 2 1566788899999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCCC
Q 047392 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~~ 258 (258)
...|++++|++.|++..+.. .+...+..+-..+...|++++|...|++..... | +...+..+-..+.+.|+.+
T Consensus 129 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA----PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHTC-----
T ss_pred HHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCHH
Confidence 99999999999999998876 788999999999999999999999999998854 5 5667888888888877753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-06 Score=68.51 Aligned_cols=145 Identities=10% Similarity=-0.034 Sum_probs=101.6
Q ss_pred ccCHHHHHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-------------------
Q 047392 109 TLGINKATEFYHWVERFF-HFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG------------------- 164 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~-~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------------- 164 (258)
....++|++.|++..+.. ...++ ..+|..+...+.+.|++++|.+.|++..+....
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 445788888888765321 11122 467777888888888888888888888773210
Q ss_pred ----CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC
Q 047392 165 ----ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240 (258)
Q Consensus 165 ----~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd 240 (258)
...+...|..+...|...|++++|.+.|++..+.. +.+..+|..+-..+.+.|++++|...|++.....- .+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~ 206 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NF 206 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH---HH
Confidence 01134467777888888888888888888887643 34577788888888888888888888888877541 34
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047392 241 VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 241 ~~ty~~li~~~~~~g~~ 257 (258)
...|..+-..|.+.|+.
T Consensus 207 ~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 66777777778777764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.1e-06 Score=72.25 Aligned_cols=49 Identities=8% Similarity=-0.157 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+|..+...+.+.|++++|..+|+++.... |+...|..+...|.+.|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCH
Confidence 445555555666666666666666666543 4455566666666666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-05 Score=56.48 Aligned_cols=121 Identities=12% Similarity=-0.060 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...|..+...+...|++++|.+.+++..+.. +. +...+..+..+|...|++++|.+.+++..+.. +.+...|..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 35567778888999999999999999988763 22 56689999999999999999999999988743 3457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
-..+.+.|++++|...|++.....- -+...+..+...+.+.|+.+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP---DNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999987541 36678888888888888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-05 Score=60.20 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|++.... .+.+...|..+...+...|++++|.+.+++..+.. +. +...+..+..+|.+.|++++|.+
T Consensus 57 ~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 57 AVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PI--NFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cH--hHHHHHHHHHHHHHcCcHHHHHH
Confidence 366999999998754 23467888889999999999999999999998874 22 66789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.+++..+.. +.+...|..+...+.+.|+.++|.+.|++....
T Consensus 132 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999988753 346788999999999999999999999998763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-08 Score=87.78 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH
Q 047392 91 ANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170 (258)
Q Consensus 91 ~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 170 (258)
+|..+..++...+.. ++|++.|.+. +|..+|..++.++.+.|++++|...++...+. .+ ++.
T Consensus 34 vWs~La~A~l~~g~~-------~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~--~~~ 95 (449)
T 1b89_A 34 VWSQLAKAQLQKGMV-------KEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR--ESY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCH-------HHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc--cch
Confidence 666666666666654 4889998643 57778999999999999999999966665553 23 456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+.+.|+.+|++.|+++++.++++ .|+..+|+.+-..|...|++++|..+|+.+. .|..|..+
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-----------n~~~LA~~ 157 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLAST 157 (449)
T ss_dssp -------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-----------CHHHHHHH
T ss_pred hHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------hHHHHHHH
Confidence 79999999999999999998885 3788899999999999999999999999772 68888888
Q ss_pred HHHcCCC
Q 047392 251 YCKYGMQ 257 (258)
Q Consensus 251 ~~~~g~~ 257 (258)
+++.|++
T Consensus 158 L~~Lg~y 164 (449)
T 1b89_A 158 LVHLGEY 164 (449)
T ss_dssp HHTTTCH
T ss_pred HHHhccH
Confidence 8888874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.9e-06 Score=68.30 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+|..+..+|.+.|++++|.+.|++..+.. +.+...|..+-..+.+.|+.++|.+.|++..
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444444444444443321 1233334444444444444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.8e-06 Score=65.04 Aligned_cols=135 Identities=15% Similarity=0.037 Sum_probs=106.5
Q ss_pred cccCHHHHHHHHHHHHhhCC-----------------------CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 047392 108 VTLGINKATEFYHWVERFFH-----------------------FFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN 163 (258)
Q Consensus 108 ~~~~~~~a~~~f~~m~~~~~-----------------------~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 163 (258)
....+++|++.|++...... ..| +...|..+...+.+.|++++|.+.+++..+...
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 170 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 35669999999999875211 222 345677788889999999999999999988742
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC----CCCCC
Q 047392 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG----FRCPP 239 (258)
Q Consensus 164 ~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~----~~~~p 239 (258)
. +..+|..+..+|.+.|++++|.+.|++..+.. +.+...|..+-..+.+.|+.++|.+.|++..+.. .. |
T Consensus 171 -~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--p 244 (258)
T 3uq3_A 171 -E--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG--S 244 (258)
T ss_dssp -T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT--T
T ss_pred -c--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCC--C
Confidence 2 66789999999999999999999999998753 3457889999999999999999999999987632 11 7
Q ss_pred CHHHHHHHH
Q 047392 240 DVYTYTILI 248 (258)
Q Consensus 240 d~~ty~~li 248 (258)
+......++
T Consensus 245 ~~~~~~~~l 253 (258)
T 3uq3_A 245 SAREIDQLY 253 (258)
T ss_dssp THHHHHHHH
T ss_pred chHHHHHHH
Confidence 765544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-05 Score=64.57 Aligned_cols=143 Identities=11% Similarity=-0.027 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-----------------------
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE----------------------- 165 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----------------------- 165 (258)
....++|.+.|++.... .+.+..+|..+...+.+.|++++|.+.+++..+.....
T Consensus 68 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 68 NEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred cCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45588888888887753 23467778888888888899999999988887652100
Q ss_pred -----------------------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 166 -----------------------LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 166 -----------------------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
..+..++..+...|.+.|++++|.+.++++.+.. +.+..+|..+...+.+.|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 0134456667777777777777777777776542 3356677777777777788888
Q ss_pred HHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 223 a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|.+.|++..... ..+..+|..+...|.+.|+.
T Consensus 225 A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 225 ALDAYNRALDIN---PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHHHHhccH
Confidence 888877776643 13456677777777777653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-05 Score=65.69 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|.++|+++... .+.+...|..+...+...| +.++|.+.|++..+.. |. +...|..+..+|...|++++|.
T Consensus 71 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 71 KANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KT-YGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp CHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TT-CTHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHccCHHHHH
Confidence 366888888887753 2235667777888888888 8888999888887653 21 3456888888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.|++..+.. +.+...+..+-..+.+.|++++|.+.|++..... ..+...|..+...|.+.|+.
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccH
Confidence 9998887643 2345667778888888999999999998888754 14567788888888877764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-05 Score=57.81 Aligned_cols=138 Identities=14% Similarity=0.005 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+.++|++.|++..+.. +-+..+|..+-..+.+.|++++|.+.+......... +...+..+-..+...++++.|.+
T Consensus 20 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~ 94 (184)
T 3vtx_A 20 DFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYILGSANFMIDEKQAAID 94 (184)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHcCCHHHHHH
Confidence 3567777777765321 234556777777777777777777777776665321 34456666666677777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.+..... +-+...+..+-..+.+.|++++|.+.|++..+..- -+..+|..+-..|.+.|+.
T Consensus 95 ~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 95 ALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP---GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc---hhhhHHHHHHHHHHHCCCH
Confidence 776665432 23455566666666677777777777777665431 2345566666666666653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=70.09 Aligned_cols=153 Identities=14% Similarity=0.062 Sum_probs=111.8
Q ss_pred CCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHH
Q 047392 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLI 176 (258)
Q Consensus 102 ~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li 176 (258)
.++...+....++|++++++.... .-+....++..+-..+...|++++|.+.+++..+.. ........+|..+-
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 344444444466777777666521 222346678889999999999999999999887651 11123456899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC------CCCCCCC-HH
Q 047392 177 KVLGEEGLVNEALATFYRMKQF------R-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP------GFRCPPD-VY 242 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~------g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~------~~~~~pd-~~ 242 (258)
..|...|++++|.+.|++..+. . .+....+|..+-..+...|++++|.++|++.... +.. |+ ..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~ 170 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAK 170 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC--HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHH
Confidence 9999999999999999998753 1 1234677888889999999999999999999764 111 43 45
Q ss_pred HHHHHHHHHHHcCCC
Q 047392 243 TYTILISSYCKYGMQ 257 (258)
Q Consensus 243 ty~~li~~~~~~g~~ 257 (258)
++..+-..|.+.|+.
T Consensus 171 ~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 171 TKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCH
Confidence 788888888888864
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-05 Score=61.14 Aligned_cols=137 Identities=12% Similarity=-0.037 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc--------
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE-------- 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~-------- 182 (258)
..++|+..|++.... -+.+...|..+-..+.+.|++++|...|++..+.. | -+...+..+-.+|.+.
T Consensus 20 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 20 RYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART--P-RYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp CHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHhhhhhhhhc
Confidence 367999999998742 23467788889999999999999999999998874 2 2566789999999999
Q ss_pred ---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 183 ---GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 183 ---g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++++|...|++..+.. +-+...|..+=..+...|++++|...|++..... .+...+..+-..|.+.|+.
T Consensus 95 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCH
T ss_pred ccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCH
Confidence 99999999999988742 2356778888889999999999999999998864 5677888888888888874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-05 Score=55.48 Aligned_cols=120 Identities=10% Similarity=-0.073 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
+.+...|..+-..+.+.|++++|.+.|++..+.. + .+...+..+-.+|...|++++|.+.|++..+.. +.+...|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-P--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-T--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 3456678888899999999999999999988763 1 256789999999999999999999999988743 34678888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
.+-..+.+.|++++|.+.|++..... |+ ...+..+-..+.+.|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD----SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999998754 43 4566667677766653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-06 Score=67.99 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhh------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERF------FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~------~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li~~~~ 180 (258)
.++|.+.|++.... ........+|..+...+...|++++|.+.+++..+.. .........+..+-..|.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 55777777766532 1122345678889999999999999999999987651 112224557889999999
Q ss_pred hcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQF------RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|++++|.+.|++..+. +-.| ...++..+-..+.+.|++++|.++|++...
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998763 2223 345788889999999999999999999875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=69.76 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=115.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|.+.|++.... .|+...|..+...+.+.|++++|.+.+++..+... -+..+|..+...|...|++++|
T Consensus 256 ~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp TTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHH
Confidence 34478999999998753 36788888899999999999999999999988742 2566899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +-+...|..+...+.+.|++++|.++|++.....- .+...|..+-..|.+.|+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP---TLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCH
Confidence 99999998753 23567899999999999999999999999987641 3456888888888888864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-05 Score=62.95 Aligned_cols=137 Identities=8% Similarity=-0.066 Sum_probs=71.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
...++|++.|++.... .-.|+ ..+|..+-..+.+.|++++|.+.|++..+... - +..+|..+-..|...|++++
T Consensus 51 ~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~--~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 51 AKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-T--RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp TCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T--CTHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-c--cHHHHHHHHHHHHHccCHHH
Confidence 3366666666665531 11111 22355566666666666666666666655421 1 23356666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYG 255 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g 255 (258)
|.+.|++..+. .+-+...|..+-..+...+++++|.+.|++..... |+ ...|..+-..+...|
T Consensus 127 A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 127 AIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK----PNIYIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcC
Confidence 66666666543 12233344433313334446666666666666532 33 444444444444444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-05 Score=64.21 Aligned_cols=143 Identities=10% Similarity=-0.007 Sum_probs=100.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH------------H
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL------------I 176 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l------------i 176 (258)
....++|.+.|++..... +-+...|..+...+.+.|++++|.+.|++..+.......+...+..+ .
T Consensus 50 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888876431 23566777788888888888888888888876531000133344444 4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
..+...|++++|.++|+++.+.. +.+...+..+-..+.+.|++++|...|++..... ..+..+|..+...|.+.|+
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC
Confidence 67788888888888888887643 3467778888888888888888888888888754 1466678888888877776
Q ss_pred C
Q 047392 257 Q 257 (258)
Q Consensus 257 ~ 257 (258)
.
T Consensus 204 ~ 204 (359)
T 3ieg_A 204 H 204 (359)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-05 Score=63.80 Aligned_cols=116 Identities=10% Similarity=-0.074 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... .+.+..+|..+...+.+.|++++|.+.|++..+... . +..+|..+..+|.+.|++++|.+
T Consensus 58 ~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 58 LRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-T--YNYAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T--CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-c--ccHHHHHHHHHHHHhccHHHHHH
Confidence 366999999998753 234678899999999999999999999999988642 1 45679999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.|+++.+. .|+...+...+..+...|+.++|...|++....
T Consensus 133 ~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 133 DLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999874 366666666666677788999999988776653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.5e-05 Score=63.45 Aligned_cols=119 Identities=8% Similarity=0.063 Sum_probs=94.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFH----NEVTCKEM------------GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p----~~~~y~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~ 172 (258)
....++|.+.|++... ..| +...+..+ ...+...|++++|.+.+++..+... .+...+
T Consensus 84 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV---WDAELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHH
T ss_pred cCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CchHHH
Confidence 4558899999988873 235 34444444 4778889999999999999887742 256688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..+..+|...|++++|.+.+++..+.. +.+..+|..+...+.+.|++++|.+.|++.....
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 899999999999999999999988753 4577888889999999999999999999988754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.9e-06 Score=65.43 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li~~~~ 180 (258)
+++|.+.|++..... .-+....+|..+-..+...|++++|.+.+++..+.. ........+|..+-..|.
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 457777777765321 112335678889999999999999999999887651 111124567899999999
Q ss_pred hcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQF------RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|++++|.+.|++..+. +-.| ...++..+-..+.+.|++++|.++|++...
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998764 2123 356788899999999999999999999875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=7.6e-05 Score=69.71 Aligned_cols=138 Identities=17% Similarity=0.080 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|++.|++..+.. +-+..+|+.|-..|.+.|++++|.+.|++..+.. | -+...|+.+-.+|.+.|++++|++
T Consensus 24 ~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P-~~~~a~~nLg~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 24 NIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--P-TFADAYSNMGNTLKEMQDVQGALQ 98 (723)
T ss_dssp CHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4679999999987431 2347789999999999999999999999988864 2 156689999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQT 258 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~~ 258 (258)
.|++..+.. +-+...|+.+-..|.+.|++++|.+.|++..+.. |+ ...|..+...|.+.|+++
T Consensus 99 ~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 99 CYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHhhhhhHHHhcccHH
Confidence 999987742 2357889999999999999999999999998754 65 567888888998888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00011 Score=57.66 Aligned_cols=135 Identities=14% Similarity=0.030 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|++.|++..+. .-.++...+..+-.++.+.|++++|.+.|++..+.. |. +...|..+-.+|...|++++|.+
T Consensus 22 ~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 22 NYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YN-LANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp CHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CS-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cc-hHHHHHHHHHHHHHcccHHHHHH
Confidence 367999999998753 222677777778899999999999999999998764 21 55679999999999999999999
Q ss_pred HHHHHHhCCCCCC-H-------HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHHHHcC
Q 047392 191 TFYRMKQFRCRPD-V-------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYG 255 (258)
Q Consensus 191 l~~~M~~~g~~p~-~-------~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~~~~g 255 (258)
.|++..+.. |+ . ..|..+=..+.+.|++++|.+.|++..... |+ ...|..+-..|...|
T Consensus 98 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 98 TLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT----SKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHH
Confidence 999988742 43 3 446666677888999999999999999753 76 445666655555444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-05 Score=54.76 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VY 205 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ 205 (258)
...|..+-..+...|++++|...|++..+.. +. +...+..+-.+|...|++++|...+++..... ..++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 3457778888999999999999999998874 22 56688999999999999999999999987642 1223 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
+|..+-..+.+.|++++|.+.|++..... |+...+..+-....
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 88888999999999999999999998854 77666665555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-05 Score=69.31 Aligned_cols=138 Identities=10% Similarity=0.036 Sum_probs=113.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..+++|.+.|++..... |+...|..+...+.+.|++++|.+.+++..+... . +..+|..+...|...|++++|.
T Consensus 251 ~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-N--NSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-T--CTHHHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-C--CHHHHHHHHHHHHHhCCHHHHH
Confidence 44779999999987542 4478888999999999999999999999987642 2 4557999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.|++..+.. +.+...|..+...+.+.|++++|..+|+++....- .+..+|..+...|.+.|+.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP---EAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST---TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCCCH
Confidence 9999998753 33677889999999999999999999999987531 3566788888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-05 Score=63.80 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-hcCChHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-EV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG-EEGLVNE 187 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~-~~g~~~~ 187 (258)
.+++|.++|++... +.|+ .. .|..+...+.+.|++++|.++|++..+... . +...|........ ..|+.++
T Consensus 114 ~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~--~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 114 KYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T--RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp CHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C--CTHHHHHHHHHHHHTSCCHHH
T ss_pred CHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHcCCHHH
Confidence 36688888888763 3343 22 677788888888888888888888776531 1 3334443333322 3588888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC-CCCCC--CHHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG-FRCPP--DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~-~~~~p--d~~ty~~li~~~~~~g~~ 257 (258)
|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++..... +. | ....|..++..+.+.|+.
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~--p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP--PEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC--GGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHcCCH
Confidence 888888876531 2356777777888888888888888888887752 22 5 355677777777766653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00021 Score=55.31 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++.. .|+...|..+-..+.+.|++++|.+.|++..+.. + .+...|..+-.+|...|++++|.+
T Consensus 21 ~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 21 DWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-K--HLAVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp CHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHHHcccHHHHHH
Confidence 3668999987663 4788899999999999999999999999988874 2 256789999999999999999999
Q ss_pred HHHHHHhCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 191 TFYRMKQFR--------------CRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 191 l~~~M~~~g--------------~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|++..+.. ..| +...|..+-..+.+.|++++|.+.|++.....
T Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999998742 111 22678888899999999999999999998755
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00016 Score=49.80 Aligned_cols=99 Identities=13% Similarity=0.010 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+...+...|++++|...|++..+.. +. +...+..+-.+|.+.|++++|.+.+++..+.. +.+...|..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 4567778888999999999999999998764 22 56678999999999999999999999988753 33578888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..+.+.|+.++|.+.|++.....
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=65.18 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li~~~~ 180 (258)
+++|.++|++..+.. .......++..+-..+...|++++|.+.+++..+.. ........++..+...|.
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 457777777765310 122345678888899999999999999999887651 111224567899999999
Q ss_pred hcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC------CCCCCCC-HHHHHH
Q 047392 181 EEGLVNEALATFYRMKQF------RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP------GFRCPPD-VYTYTI 246 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~------~~~~~pd-~~ty~~ 246 (258)
..|++++|.+.|++..+. +-.| ....|..+-..+.+.|++++|.++|++.... +.. |+ ..++..
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 200 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD--PNVAKTKNN 200 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC--HHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence 999999999999998763 2223 4566888889999999999999999999764 211 43 346778
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
+-..|.+.|+.
T Consensus 201 la~~~~~~g~~ 211 (311)
T 3nf1_A 201 LASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHTCH
T ss_pred HHHHHHHcCCH
Confidence 88888888864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00014 Score=55.00 Aligned_cols=125 Identities=14% Similarity=-0.026 Sum_probs=101.9
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.+...... .+-+...+..+-..+...++.+.|.+.+.+..+.. + -+...+..+-.+|.+.|++++|+
T Consensus 53 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~--~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 53 GLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-T--VYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHHHhCCchhHH
Confidence 3467999999988753 23456677778888899999999999999988764 2 25668999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
+.|++..+.. +-+..+|..+-..|.+.|+.++|.+.|++..+.. |+-..|
T Consensus 128 ~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~a~~ 177 (184)
T 3vtx_A 128 EAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE----EKKAKY 177 (184)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC----ccCHHH
Confidence 9999988753 3467889999999999999999999999998743 765444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-05 Score=66.90 Aligned_cols=136 Identities=17% Similarity=0.119 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFFHFFHN--------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~--------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
.+++|+++|+++.+. .|+ ..+|..+-..+...|++++|.+.|++..+.. | +..+|..+-..|...
T Consensus 217 ~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--P--TPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--C--CchHHHHHHHHHHHh
Confidence 477899999988743 244 3356677788889999999999999998863 4 466899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++++|.+.|++..+.. +.+..+|..+-..+.+.|++++|.+.|++.....- -+...|..+-..|.+.|+.
T Consensus 290 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP---ENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCSHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCH
Confidence 99999999999998753 34678899999999999999999999999988541 3456888888888888874
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.2e-05 Score=56.68 Aligned_cols=140 Identities=8% Similarity=-0.007 Sum_probs=104.5
Q ss_pred cccccCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 106 QKVTLGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 106 ~~~~~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
+....++++|++.|+.... ..|+ ...+-.+-..|.+.|++++|.+.|++..+.. | -+..+|..+-.+|.+.|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--E-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCc
Confidence 3344457788888887652 2233 3345567788999999999999999998874 2 266789999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL-LEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~-f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
+++|...|++..+.. +-+...|..+-..|.+.|+.++|.+. +++..+.. |+ ...|...-..+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCc
Confidence 999999999988743 23577888899999999999876665 57776633 54 5567766666666664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.2e-05 Score=51.47 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNV 209 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~ 209 (258)
...|..+-..+.+.|++++|...|++..+... .+...|..+-.+|...|++++|.+.|++..+.. +. +...|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 44566777888999999999999999888642 256688999999999999999999999998753 22 5788899
Q ss_pred HHHHHHHc-CCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRV-GNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~-g~~~~a~~~f~~M~~~~ 234 (258)
+-..+.+. |+.++|.+.|++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00018 Score=59.69 Aligned_cols=138 Identities=8% Similarity=-0.057 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|.++|++... .+.| +...|..+...+.+.|++++|.++|++..+. .|.-....|..+...+.+.|++++|.+
T Consensus 80 ~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 80 SDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 3689999999874 1335 4568999999999999999999999999874 232112379999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALC-RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+|++..+.. +.+...|........ ..|+.++|..+|++..... .-+...|..++..+.+.|+.
T Consensus 156 ~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCH
Confidence 999998753 234455543333322 2699999999999998753 13567788888888888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00016 Score=51.88 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.|...-..+.+.|++++|.+.|++..+.. .-+...|..+-.+|.+.|++++|++.|++..+.. +.+...|..+-.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 45566778899999999999999988764 1267789999999999999999999999988743 3457889999999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 214 LCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+...|++++|.+.|++..+.. |+-.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~----P~~~ 115 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD----PSNE 115 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHC----cCCH
Confidence 999999999999999998743 6644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00042 Score=55.53 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.+..+......|..+-..|...|++++|.+
T Consensus 18 ~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp CHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3679999999987532 22344788888899999999999999999988543343445568999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
.|++..+.. +-+...|..+-..+.+.|++++|.+.|++.....- -+...|..+-
T Consensus 96 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~ 149 (272)
T 3u4t_A 96 QYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT---TDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC---CCHHHHHHHH
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC---CcHHHHHHHH
Confidence 999988743 23567899999999999999999999999987531 3444555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.5e-05 Score=67.62 Aligned_cols=133 Identities=11% Similarity=-0.039 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc---------C
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE---------G 183 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~---------g 183 (258)
++|++.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. | +...+..+-..|... |
T Consensus 120 ~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 120 PEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--K--NKVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--C--CHHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C--CHHHHHHHHHHHHHhccCChhhhhh
Confidence 46666666554321 1234556666666666666666666666655432 3 344555666666665 6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHhHhCCCCCCC----CHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRV--------GNFNKARFLLEQMELPGFRCPP----DVYTYTILISSY 251 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------g~~~~a~~~f~~M~~~~~~~~p----d~~ty~~li~~~ 251 (258)
++++|.+.|++..+.. +-+...|..+-..|... |++++|.+.|++..... | +...|..+-..|
T Consensus 194 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD----RKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC----GGGGGCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHH
Confidence 6666666666655432 22345555555555555 55666666666665532 4 445555555555
Q ss_pred HHcCC
Q 047392 252 CKYGM 256 (258)
Q Consensus 252 ~~~g~ 256 (258)
.+.|+
T Consensus 269 ~~~g~ 273 (474)
T 4abn_A 269 KYEES 273 (474)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 55554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.04 E-value=7.3e-05 Score=62.43 Aligned_cols=133 Identities=11% Similarity=-0.067 Sum_probs=94.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
++.|++.... + .++..++..+-..+...|++++|++++.+-.+.|-. .-+...+-.++..|.+.|+.+.|.+++++|
T Consensus 86 ~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 86 IEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555554422 2 456666667778888999999999999887665421 125667888899999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 196 KQFRCRP-----DVYAYNVVINALCR--VG--NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 196 ~~~g~~p-----~~~ty~~li~~~~~--~g--~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+. .| +-.+..-|..+++. .| +..+|..+|+++.+.. |+..+-..++.++.+.|++
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CSHHHHHHHHHHHHHHTCH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CCcccHHHHHHHHHHcCCH
Confidence 774 46 35666666666333 34 8999999999987654 7755555566677777765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.9e-05 Score=55.92 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCCh--HHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGLV--NEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~~--~~a 188 (258)
.++|++.|++.... -+.+...|..+-..+...|++++|...|++..+.. | .+...+..+-.+ |...|++ ++|
T Consensus 26 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 26 PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--G-ENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-SCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44677777776543 23467788999999999999999999999988764 1 155678888888 7799998 999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+.|++..+.. +-+...|..+-..+.+.|++++|...|++.....
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999998753 2356788888899999999999999999998754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00013 Score=54.39 Aligned_cols=103 Identities=10% Similarity=-0.051 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+-..+.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+=
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--F-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 3356667778899999999999999998874 2 266789999999999999999999999998743 33578888999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
.+|.+.|+.++|...|++..... ||..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~----~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS----NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCHH
Confidence 99999999999999999999854 7764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00038 Score=49.22 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
..|..+-..+.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|++.|++..+.. +-+...|..+-.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456667778889999999999999988864 1 256789999999999999999999999988753 335778888889
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 047392 213 ALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~ 232 (258)
++...|++++|.+.|++...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999999876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00044 Score=49.78 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
.+...+..+-..+.+.|++++|.+.|++..+.. | + ...|..+-.+|...|++++|.+.+++..+.. +.+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--A--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--C--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--c--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 456778888899999999999999999998753 3 4 5678899999999999999999999987642 23677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|..+-..+.+.|+.++|...|++.....
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888899999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0015 Score=52.55 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=99.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE---- 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~---- 181 (258)
.+.++|++.|++..+. + +...+..+-..|.+ .++.++|.+.|++..+.+ +...+..+-..|..
T Consensus 92 ~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 92 QNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSS
T ss_pred cCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCC
Confidence 3467899999888743 2 67778888888888 899999999999988876 44567778788887
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++.++|.+.|++..+.+ +...+..+-..|.+ .++.++|.+.|++..+.+ | ...+..+-..|.+
T Consensus 163 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N-GGGCFNLGAMQYN 230 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----C-HHHHHHHHHHHHc
Confidence 889999999999988765 56777778888888 899999999999988765 4 4556566666655
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.001 Score=53.57 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=75.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh---
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--- 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--- 181 (258)
..+.++|++.|++..+. + +...+..+-..+.+ .++.++|.+.|++..+.+ +...+..+-..|..
T Consensus 55 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL-N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCC
Confidence 33466666666665532 2 45556666666666 666666666666666554 44456666666666
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 -EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 -~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++.++|.+.|++..+.+ +...+..+-..|.+ .++.++|...|++..+.+ +...+..+-..|.+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHH 194 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHc
Confidence 666666666666666654 44555555555555 666666666666666543 23344444444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00016 Score=65.19 Aligned_cols=132 Identities=11% Similarity=-0.111 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
++|.+.|++..+. -+-+...|..+-..+.+.|++++|.+.|++..+.. | -+...|..+-.+|...|++++|.+.|
T Consensus 6 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 6 PRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--P-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--T-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3555555544321 11234455555555556666666666666555442 1 13445555555666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHc
Q 047392 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKY 254 (258)
Q Consensus 193 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~ 254 (258)
++..+.. +-+...|..+-..+.+.|+.++|.+.|++..+.. | +...+..+...+.+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHh
Confidence 6555432 2234555555555666666666666666655432 2 344455555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00039 Score=49.65 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.+...|..+-..+.+.|++++|...|++..+.. | -+...|..+-.+|...|++++|...|++..+.. +-+...|..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--c-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 467788888999999999999999999988874 2 256789999999999999999999999988753 336778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 047392 210 VINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+-..+.+.|++++|...|++...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00062 Score=56.82 Aligned_cols=140 Identities=11% Similarity=-0.105 Sum_probs=97.5
Q ss_pred cCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---cCHHHHHHHHHH--HHhcC
Q 047392 110 LGINKATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---VTTSTVTCLIKV--LGEEG 183 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~t~~~li~~--~~~~g 183 (258)
.+.++|++.+++.... +- .-+...+-.++..+.+.|+.+.|.+.+++|.+.. |+ .+..+...|..+ ....|
T Consensus 114 g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI--EDTVSGDNEMILNLAESYIKFATN 190 (310)
T ss_dssp TCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccccccchHHHHHHHHHHHHHHhC
Confidence 3367999999887422 21 1256678889999999999999999999998762 20 024466666666 33334
Q ss_pred --ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC---------CCCCCCHHHHHHHHHHHH
Q 047392 184 --LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG---------FRCPPDVYTYTILISSYC 252 (258)
Q Consensus 184 --~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~---------~~~~pd~~ty~~li~~~~ 252 (258)
+..+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+...- -+ -|..+.--+|....
T Consensus 191 ~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p--~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 191 KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL--YKPTFLANQITLAL 266 (310)
T ss_dssp CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS--SHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC--CCHHHHHHHHHHHH
Confidence 899999999999765 3665555666668999999999999999876531 01 35556645554444
Q ss_pred HcCC
Q 047392 253 KYGM 256 (258)
Q Consensus 253 ~~g~ 256 (258)
..|+
T Consensus 267 ~lgk 270 (310)
T 3mv2_B 267 MQGL 270 (310)
T ss_dssp HTTC
T ss_pred HhCh
Confidence 4443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00021 Score=52.73 Aligned_cols=98 Identities=7% Similarity=-0.071 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+-..+.+.|++++|...|++..+.. ..+...|..+-.+|...|++++|.+.|++..+.. +-+...|..+-
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4456667788899999999999999988764 1266688889999999999999999999988743 33667888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhC
Q 047392 212 NALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.++...|++++|...|++....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00016 Score=64.09 Aligned_cols=132 Identities=11% Similarity=-0.032 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV-KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
++++++.+++... .-+.+...|..+-..+...|++ ++|.+.|++..+.. | -+...|..+-.+|.+.|++++|.+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--P-ELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777776653 2234678888889999999999 99999999998874 2 256789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHc
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRV---------GNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKY 254 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~---------g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~ 254 (258)
.|++..+. .|+...|..+-..+... |++++|.+.|++..... | +...|..+-..|.+.
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----VLDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 99999875 48888888888999999 99999999999998854 4 466777777777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00018 Score=52.41 Aligned_cols=96 Identities=8% Similarity=-0.011 Sum_probs=80.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.+..+-..+.+.|++++|.+.|++..+... -+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 445566778899999999999999988642 266678899999999999999999999988753 3466778888899
Q ss_pred HHHcCCHHHHHHHHHHhHhC
Q 047392 214 LCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~ 233 (258)
+...|++++|...|++....
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0004 Score=59.85 Aligned_cols=136 Identities=4% Similarity=-0.069 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN-VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|++.|++.... -+-+...|+.+-..+.+.|+ +++|.+.|++..+..- -+...|+.+-.+|.+.|++++|+.
T Consensus 113 ~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P---~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 113 SERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP---KNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHccCHHHHHH
Confidence 35888888887643 12346778888888888896 9999999999888642 156678888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH-cCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~-~g~ 256 (258)
.|+++.+.. +-+...|..+-..+.+.|++++|...|+++....- -+...|+.+-..|.+ .|.
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P---~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV---RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCc
Confidence 999988743 34677888888888889999999999999988551 245677777777776 443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00038 Score=51.19 Aligned_cols=116 Identities=12% Similarity=-0.011 Sum_probs=58.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|.+.|++.... .+.+...|..+...+.+.|++++|.+.+++..+.. + .+...|..+-.+|.+.|++++|
T Consensus 26 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~--~~~~~~~~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 26 AKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-K--KYIKGYYRRAASNMALGKFRAA 100 (166)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--ccHHHHHHHHHHHHHhccHHHH
Confidence 34455566666555432 12244555555555556666666666665555542 1 1344555555556666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHh
Q 047392 189 LATFYRMKQFRCRPDVYAYN--VVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~--~li~~~~~~g~~~~a~~~f~~M 230 (258)
.+.|++..+.. +-+...+. .+...+.+.|++++|.+.+.+.
T Consensus 101 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 101 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666555421 11222332 2222244555666666655544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=52.95 Aligned_cols=100 Identities=9% Similarity=-0.046 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...|..+-..+.+.|++++|.+.|++..+..- -+...|..+-.+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677788889999999999999999888741 266789999999999999999999999988753 3357888899
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-..+.+.|++++|.+.|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999987643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00071 Score=47.67 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=74.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINA 213 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~----~~ty~~li~~ 213 (258)
+-..+.+.|++++|.+.|++..+...........+..+-.+|.+.|++++|...|++..+.. |+ ...+..+-.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 45567789999999999999888642211111467778888999999999999999987743 43 5667778888
Q ss_pred HHHcCCHHHHHHHHHHhHhCC
Q 047392 214 LCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+.+.|+.++|...|++.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00055 Score=50.33 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
..|..+-..+...|++++|...|++..+... .+..++..+-.+|...|++++|.+.|++..+.. +.+...|..+-.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4567777888899999999999999887641 256789999999999999999999999988753 346778888999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCC
Q 047392 213 ALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+.+.|++++|...|++.....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00074 Score=46.71 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.+.|+++... .+.+...+..+...+.+.|++++|...++++.+.. + .+..++..+...|...|++++|.+.
T Consensus 25 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 25 YDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P--NNAEAWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C--ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66999999998754 23467788999999999999999999999998874 2 2567899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
|+++.+.. +-+...+..+-..+
T Consensus 100 ~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 100 YQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHH
Confidence 99998643 22344444443333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00034 Score=57.54 Aligned_cols=138 Identities=11% Similarity=-0.074 Sum_probs=100.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH-HHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT-CLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~-~li~~~~~~g~~~~a 188 (258)
.+.++|.+.|++..... +-+...+..+...+.+.|+.++|.+.+++..+.. | +..... .....+...++.++|
T Consensus 131 g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p--~~~~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--Q--DTRYQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp TCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--C--SHHHHHHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--c--chHHHHHHHHHHHHhhcccCcc
Confidence 34668888888876431 2345677778888888888888888888775542 3 332222 222236677778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHHHHcCCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYGMQT 258 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~~~~g~~~ 258 (258)
.+.|++..+.. +-+...+..+-..+...|+.++|...|.+..... |+ ...+..+...|...|+.+
T Consensus 205 ~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 205 IQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD----LTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----cccccchHHHHHHHHHHHcCCCC
Confidence 88888876642 3467888889999999999999999999999865 54 567899999998888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00061 Score=53.38 Aligned_cols=102 Identities=14% Similarity=-0.085 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.|...|...-..+.+.|++++|.+.|++..+....+ +...+..+-.+|.+.|++++|++.|++..+.. +-+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ--DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 355677778888999999999999999998875223 66677779999999999999999999998753 225677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+-..+.+.|+.++|.+.|++.....
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC
Confidence 8899999999999999999998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0009 Score=53.70 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh--------
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-------- 181 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~-------- 181 (258)
.+++|++.|++......-.|. ...+..+-.++.+.|++++|...|++..+...........+..+-.++.+
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence 367999999999854311111 56777888899999999999999999988632111123457777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---
Q 047392 182 EGLVNEALATFYRMKQFRCRPD-VYAY-----------------NVVINALCRVGNFNKARFLLEQMELPGFRCPPD--- 240 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~-~~ty-----------------~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--- 240 (258)
.|++++|.+.|++..+.. |+ ...+ -.+-..|.+.|++++|...|++..... |+
T Consensus 110 ~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~ 183 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY----PDTPW 183 (261)
T ss_dssp CHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTT
T ss_pred chhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCCch
Confidence 999999999999998642 43 2233 344667889999999999999998754 54
Q ss_pred -HHHHHHHHHHHHHc
Q 047392 241 -VYTYTILISSYCKY 254 (258)
Q Consensus 241 -~~ty~~li~~~~~~ 254 (258)
...+..+-.+|.+.
T Consensus 184 ~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 184 ADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 34566666666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00043 Score=61.86 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=38.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC--HHHHHHHHHHHHHcCC
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSYCKYGM 256 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--~~ty~~li~~~~~~g~ 256 (258)
..|+.++|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++....+- ..|+ ...|...+.-..+.|+
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~-~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-SCGGGCHHHHHHHHHHHHHSSC
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 3555555555555544321 12345556666666666666666666666655421 1122 3355555555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00057 Score=52.76 Aligned_cols=116 Identities=13% Similarity=-0.027 Sum_probs=92.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
+..+-..+.+.|++++|.+.|++. +.+ +...|..+-.+|.+.|++++|.+.|++..+.. +.+...|..+-..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 445666778899999999999876 334 67789999999999999999999999988753 34678899999999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCC------------CCC-CHHHHHHHHHHHHHcCCC
Q 047392 215 CRVGNFNKARFLLEQMELPGFR------------CPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~~~------------~~p-d~~ty~~li~~~~~~g~~ 257 (258)
.+.|++++|.+.|++.....-. ..| +...|..+-..|.+.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 9999999999999999875311 001 125677777778877764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00041 Score=64.80 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
..+|+.|-..+.+.|++++|.+.|++..+.. | -+...|+.|-.+|.+.|++++|++.|++..+.. +-+...|+.+=
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5678999999999999999999999988863 2 156789999999999999999999999988743 23478899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..+.+.|++++|.+.|++..+.. |+ ...|..+-..|.+.|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998754 54 56888888888888875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00062 Score=48.71 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VY 205 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ 205 (258)
..++.-+-..+.+.|++++|.+.|++..+.. | -+...|+.+-.+|.+.|++++|++.|++..+.. ..++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--P-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456677888999999999999999988763 2 256789999999999999999999999986521 1222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+|..+=..+...|++++|.+.|++-.... ||..+...|
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~----~~~~~~~~l 122 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEF----RDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCHHHHHHH
Confidence 56666677888999999999999987643 776655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00035 Score=52.81 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~~~~a~ 189 (258)
.+++|.+.|++.... -+-+...+..+-..+.+.|++++|...+++..+.. | +...+..+... +...++..+|.
T Consensus 21 ~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~~~~~~~a~ 94 (176)
T 2r5s_A 21 EHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q--DNSYKSLIAKLELHQQAAESPEL 94 (176)
T ss_dssp CHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C--CHHHHHHHHHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C--ChHHHHHHHHHHHHhhcccchHH
Confidence 366899999875432 12356778888899999999999999998876542 3 33223222111 22333444578
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHHHHcCCCC
Q 047392 190 ATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYGMQT 258 (258)
Q Consensus 190 ~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~~~~g~~~ 258 (258)
+.|++..+. .| +...+..+-..+.+.|++++|...|++..... |+ ...+..+...|...|+.+
T Consensus 95 ~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 95 KRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVN----LGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----cccChHHHHHHHHHHHHHhCCCC
Confidence 888887763 25 57888889999999999999999999998865 54 567888888998888764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0014 Score=45.68 Aligned_cols=103 Identities=12% Similarity=-0.007 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.+.|++.... .+.+...|..+...+...|++++|.+.+++..+.. | .+...+..+-.+|.+.|++++|.+.
T Consensus 28 ~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 28 FEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--P-AYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--c-cCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56999999998753 23467788889999999999999999999998863 2 2566889999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
|++..+.. +.+...+..+...+.+.|+.
T Consensus 103 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 103 YKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99987753 23667777777777777654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0015 Score=58.84 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|++..+. -+-+...|..+-..+.+.|++++|.+.+++..+.. | -+...|..+-.+|.+.|++++|.+
T Consensus 38 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 38 DTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--P-EHPGIALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp CHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 367999999998742 23457788889999999999999999999998874 2 256789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhHhCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRV---GNFNKARFLLEQMELPG 234 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~---g~~~~a~~~f~~M~~~~ 234 (258)
.|++..+.. +-+...+..+...+.+. |+.++|.+.|++..+.+
T Consensus 113 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 113 AYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999988743 23577888999999999 99999999999998755
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00078 Score=47.74 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=78.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
+-.+-..+.+.|++++|...|++..+.. | -+...|..+-.++...|++++|+..|++..+.. +-+...|..+-..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445567788999999999999998864 2 256678889999999999999999999987743 23567888888999
Q ss_pred HHcCCHHHHHHHHHHhHhCC
Q 047392 215 CRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+.|+.++|...|++.....
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998743
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.001 Score=59.39 Aligned_cols=137 Identities=8% Similarity=-0.060 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|.++|++.... -.+-+...|..+...+.+.|++++|.++|++..+.. |. + ...|......+.+.|++++|.+
T Consensus 302 ~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 302 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DI-DPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--cc-CchHHHHHHHHHHHHhcCHHHHHH
Confidence 45788999887631 123357888999999999999999999999998852 31 2 3579999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVI-NALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
+|++..+.. +.+...|-... -.+...|+.++|..+|++..+.. | +...|..++..+.+.|+.
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhCCCH
Confidence 999988742 11223332222 12346899999999999888753 5 577888888888887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0016 Score=53.45 Aligned_cols=142 Identities=6% Similarity=-0.092 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g 183 (258)
.++|.+++++........|+. ..|..+...+...|++++|.+.|++..+.... ..+ ..+|+.+-..|...|
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHcC
Confidence 569999999987544444442 23445666677788999999999999884322 112 336999999999999
Q ss_pred ChHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHh----CCCCCCCC-HHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQ----F-RCRPDV-YAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPD-VYTYTILISSYC 252 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~-g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~----~~~~~~pd-~~ty~~li~~~~ 252 (258)
++++|.+.|++..+ . +..+.. .+|+.+-..|.+.|+.++|.+.+++... .+.. +. ..+|..+=..|.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM--ALIGQLYYQRGECLR 247 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC--TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHH
Confidence 99999999999874 2 222333 4788888999999999999999988764 2221 33 456777767777
Q ss_pred HcCC
Q 047392 253 KYGM 256 (258)
Q Consensus 253 ~~g~ 256 (258)
+.|+
T Consensus 248 ~~g~ 251 (293)
T 3u3w_A 248 KLEY 251 (293)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 7763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0031 Score=51.59 Aligned_cols=146 Identities=8% Similarity=-0.063 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CcC--HHHHHHHHHHHHhcC
Q 047392 111 GINKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVT--TSTVTCLIKVLGEEG 183 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~--~~t~~~li~~~~~~g 183 (258)
..++|.+.+++..+.....++. ..+..+...+...|+.++|.+.+++..+..... ... ..+|+.+-..|...|
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 169 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC
Confidence 3568999998776432221111 223345566778899999999999887542211 111 458999999999999
Q ss_pred ChHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQ----FRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~~ 253 (258)
++++|.+.|++..+ .+-.+ ...+|+.+-..|.+.|++++|.+.|++.... +.. ..-..+|..+-..|.+
T Consensus 170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~-~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYYQRGECLRK 248 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHH
Confidence 99999999999862 22111 1258888999999999999999999987642 111 0115677777778888
Q ss_pred cCCC
Q 047392 254 YGMQ 257 (258)
Q Consensus 254 ~g~~ 257 (258)
.|+.
T Consensus 249 ~g~~ 252 (293)
T 2qfc_A 249 LEYE 252 (293)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 7765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0029 Score=49.08 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHH----------------HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKE----------------MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~ 174 (258)
+++|++.|++.... .|+ ...|.. +-..+.+.|++++|...|++..+.. | -+...|..
T Consensus 20 ~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~ 93 (208)
T 3urz_A 20 NGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--P-NNVDCLEA 93 (208)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C-CCHHHHHH
Confidence 56888888876642 133 234444 6777888888888888888887764 1 15667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-----------------------------------HHcC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINAL-----------------------------------CRVG 218 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~-----------------------------------~~~g 218 (258)
+-.+|...|++++|.+.|++..+.. | +...|..+-..| ...|
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence 8888888888888888888877632 3 334443333222 2345
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 219 NFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 219 ~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+.++|...|++..+.. |+......+-+
T Consensus 172 ~~~~A~~~~~~al~l~----P~~~~~~~l~~ 198 (208)
T 3urz_A 172 RYEKARNSLQKVILRF----PSTEAQKTLDK 198 (208)
T ss_dssp THHHHHHHHHHHTTTS----CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC----CCHHHHHHHHH
Confidence 6778888888888633 88766655544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0002 Score=50.28 Aligned_cols=106 Identities=11% Similarity=-0.037 Sum_probs=63.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 224 (258)
.|++++|...|++..+.+....-+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777766531111134567777777777788888888887776542 224566677777777778888888
Q ss_pred HHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 225 FLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 225 ~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
..|++.....- -.|+...|...|..|.
T Consensus 82 ~~~~~al~~~p-~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 82 ELLLKIIAETS-DDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHC-CCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHH
Confidence 87777765431 0134444555554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0029 Score=49.67 Aligned_cols=140 Identities=10% Similarity=0.036 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH-HHHHHHHHHHH--------
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLG-------- 180 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~t~~~li~~~~-------- 180 (258)
..++|++.|+++.....-.|. ...+..+..++.+.|++++|.+.|++..+.... .+.. ..+-.+-.++.
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhh
Confidence 366888888888754321222 345666778888889999999999888776321 1121 12222333333
Q ss_pred ----------hcCChHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 ----------EEGLVNEALATFYRMKQFRCRPDVY-AY-----------------NVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ----------~~g~~~~a~~l~~~M~~~g~~p~~~-ty-----------------~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|+.++|...|++..+. .|+.. .+ -.+-..+.+.|++++|...|+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 257888888888888764 24321 22 1233456788888999999988887
Q ss_pred CCCCCCCCH----HHHHHHHHHHHHcCCC
Q 047392 233 PGFRCPPDV----YTYTILISSYCKYGMQ 257 (258)
Q Consensus 233 ~~~~~~pd~----~ty~~li~~~~~~g~~ 257 (258)
.. |+. ..+..+..+|.+.|+.
T Consensus 176 ~~----p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 176 DY----PDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HS----TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HC----cCCCccHHHHHHHHHHHHHcCCc
Confidence 53 543 3566677777777764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0022 Score=55.21 Aligned_cols=119 Identities=3% Similarity=-0.039 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
..|+.+-..+.+.|+.++|.+.+++..+.. | -+...|+.+-.++.+.|+ +++|++.|++..+.. +-+...|+.+-
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--A-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--c-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 346667777888999999999999998874 2 256689999999999997 999999999998743 23678899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
..+.+.|++++|...|++.....- -+...|..+-..+.+.|+++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP---~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA---KNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc---cCHHHHHHHHHHHHHcCChH
Confidence 999999999999999999998541 35667888888888888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0025 Score=49.50 Aligned_cols=107 Identities=10% Similarity=-0.007 Sum_probs=83.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC----------------LIKVLGEEGLVNEALATFYRMKQFRCR 201 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~----------------li~~~~~~g~~~~a~~l~~~M~~~g~~ 201 (258)
.-..+.+.|++++|...|++..+.. | -+...|.. +-.+|.+.|++++|...|++..+.. +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN--I-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--H-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--C-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 3345678999999999999988763 2 13334555 8889999999999999999988743 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHH
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYC 252 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~ 252 (258)
-+...|..+-..+...|++++|...|++..... |+ ...|..+-..|.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYY 133 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 367888999999999999999999999998854 54 456666555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0027 Score=44.49 Aligned_cols=101 Identities=7% Similarity=-0.093 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.|++.... .+.+...|..+...+...|++++|.+.+++..+.. | .+...+..+-.+|.+.|++++|.+.
T Consensus 32 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~la~~~~~~~~~~~A~~~ 106 (133)
T 2lni_A 32 YPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--P-TFIKGYTRKAAALEAMKDYTKAMDV 106 (133)
T ss_dssp SHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-CchHHHHHHHHHHHHHhhHHHHHHH
Confidence 45899999998742 23467888889999999999999999999998864 2 2566899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
|++..+.. +-+...+..+-..+.+.|
T Consensus 107 ~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 107 YQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99987642 123455666656655544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0021 Score=54.08 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--------------TSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--------------~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
...|..+-..+.+.|++++|...|++..+.. |... ...|..+-.+|.+.|++++|++.|++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777888888888887776653 2111 45777778888888888888888888766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcC
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYG 255 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g 255 (258)
.. +-+...|..+-.+|.+.|++++|...|++..... |+ ...+..+-..+.+.|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
Confidence 42 3356777777777888888888888888877643 43 445555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0038 Score=52.48 Aligned_cols=115 Identities=9% Similarity=-0.044 Sum_probs=94.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN----------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~----------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
...++|++.|++..... |+ ...|..+-.++.+.|++++|.+.+++..+.. | -+...|.
T Consensus 161 g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~ 234 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--S-NNEKGLS 234 (336)
T ss_dssp TCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHHHH
Confidence 34679999999877432 33 4788999999999999999999999998874 2 2677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHhH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a-~~~f~~M~ 231 (258)
.+-.+|...|++++|.+.|++..+.. +-+...+..+-..+.+.|+.++| ..+|+.|.
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988742 23567888888999999999988 55666664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.004 Score=51.02 Aligned_cols=123 Identities=9% Similarity=-0.028 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCC--C-CCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFF---HFFH-NEVTCKEMGIVFARG-NNVKGLWDFLKEMSRRGN--G-ELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~---~~~p-~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~--~-~~~~~~t~~~li~~~~~~ 182 (258)
..++|++.|++...-. |-.. -..+|+.+-..|... |++++|.+.|++-.+... . +.....+|+.+-..|.+.
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 3557777766654211 1101 145788888889886 999999999988765411 0 000134688899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 183 GLVNEALATFYRMKQFRCRPDV------YAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~------~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
|++++|++.|++..+..-.... ..|..+..++...|+.++|...|++....
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998874322221 15677778888999999999999998863
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0027 Score=46.91 Aligned_cols=111 Identities=12% Similarity=-0.021 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCC--------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRR-------GNGE--------LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~--------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
..+...-..+.+.|++++|.+.|.+..+. .-.. ..+...|..+-.+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34666777888999999999999887664 0000 11345788899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILI 248 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li 248 (258)
.. +-+...|..+-.++...|++++|...|++..... |+-. .....+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~~l 138 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH----PAAASVVAREM 138 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----GGGHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC----CCCHHHHHHHH
Confidence 53 3467888889999999999999999999998744 7654 444333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00033 Score=51.69 Aligned_cols=107 Identities=11% Similarity=-0.046 Sum_probs=84.0
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
...|++++|.+.+....... | -+...+-.+-..|.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~--p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP--R-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH--H-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcccC--c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 34577888888887764431 1 123346678889999999999999999988743 3467889999999999999999
Q ss_pred HHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 223 ARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 223 a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
|...|++..+.. |+ ...|..+-..|.+.|+.
T Consensus 84 A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 84 AVECYRRSVELN----PTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCh
Confidence 999999999854 64 66788888888888875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0038 Score=51.04 Aligned_cols=98 Identities=14% Similarity=0.010 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...+..+-..+.+.|++++|...|++..+.. | -+...|..+-.+|.+.|++++|.+.+++..+.. +-+...|..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34456666667777777777777777776653 1 145567777777777777777777777776542 2345666677
Q ss_pred HHHHHHcCCHHHHHHHHHHhHh
Q 047392 211 INALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~ 232 (258)
-.++.+.|++++|...|++...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0014 Score=49.82 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC--
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--N-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRP-- 202 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p-- 202 (258)
..++..+-..+...|++++|.+.+++..+.. . .+.....+++.+-..|...|++++|.+.+++..+ .|-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 4455555566666666666666666554410 0 0111333455555666666666666666665443 12111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 203 DVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 203 ~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
....++.+-..+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12335555555666666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0015 Score=53.62 Aligned_cols=145 Identities=10% Similarity=-0.082 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHh---hCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhc-C
Q 047392 112 INKATEFYHWVER---FFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEE-G 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~---~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~-g 183 (258)
+++|++.|.+..+ ..|-.++ ..+|+.+-..|.+.|++++|...|++-.+-.. .+..-..+|+.+-..|... |
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4577777765532 1122222 56889999999999999999999887655310 0000134788899999996 9
Q ss_pred ChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH-----HHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-----YTYTILISSYCK 253 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~-----~ty~~li~~~~~ 253 (258)
++++|++.|++..+. |-.+. ..+|+.+-..+.+.|++++|...|++....... .++. ..|..+..++..
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-NRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-CTTTGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHH
Confidence 999999999997652 11111 357888999999999999999999999875421 0111 145666666666
Q ss_pred cCCC
Q 047392 254 YGMQ 257 (258)
Q Consensus 254 ~g~~ 257 (258)
.|+.
T Consensus 212 ~g~~ 215 (292)
T 1qqe_A 212 ATDA 215 (292)
T ss_dssp TTCH
T ss_pred cCCH
Confidence 6653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0071 Score=46.22 Aligned_cols=113 Identities=15% Similarity=-0.007 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc---C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV---T-----------TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~-----------~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
.+..+-..+.+.|++++|.+.|++..+..-. .+ . ...|..+-.+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4555666677788888888888887764211 11 0 2567777788888888888888888877642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHH
Q 047392 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYC 252 (258)
Q Consensus 200 ~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~ 252 (258)
+.+...|..+-.++...|++++|.+.|++..... |+ ...+..+-..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELCVN 167 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHH
Confidence 3456677777778888888888888888877643 43 344444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0015 Score=60.55 Aligned_cols=116 Identities=9% Similarity=-0.110 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHh-----h-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh
Q 047392 112 INKATEFYHWVER-----F-FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 112 ~~~a~~~f~~m~~-----~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~ 185 (258)
.++|++.|++..+ . ..-+.+...|..+-..+.+.|++++|.+.|++..+..- -+...|..+-.+|...|++
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---WRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---chHHHHHHHHHHHHHcCCH
Confidence 4556666655540 0 01122334455555556666666666666666555421 1334455555555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++|.+.|++..+.. +-+...|..+-..+.+.|++++ .+.|++..+
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 66666666554421 1123344444444444444444 444444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0035 Score=53.23 Aligned_cols=147 Identities=9% Similarity=0.008 Sum_probs=99.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCcCHHHHHHHHHHHHh
Q 047392 110 LGINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG----ELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~t~~~li~~~~~ 181 (258)
...++|++.|++......-.++ ..+|..+-..+...|+.++|.+.+++-.+.-.. ......+++.+-..|..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 3366889998887643222233 356777888888999999998888876554111 01123467888888999
Q ss_pred cCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~ 252 (258)
.|++++|.+.|++..+. +-.+ ...+|+.+=..|...|+.++|.+.|++.... +.. .-...++..+-..|.
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAYFLITQIHY 275 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHH
Confidence 99999999988887642 2111 1246777888888899999999999888761 211 133556777777777
Q ss_pred HcCCC
Q 047392 253 KYGMQ 257 (258)
Q Consensus 253 ~~g~~ 257 (258)
+.|+.
T Consensus 276 ~~g~~ 280 (383)
T 3ulq_A 276 KLGKI 280 (383)
T ss_dssp HTTCH
T ss_pred HCCCH
Confidence 77764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0012 Score=49.53 Aligned_cols=107 Identities=11% Similarity=0.098 Sum_probs=81.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH-
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA-LCRVGNF- 220 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~~- 220 (258)
...|++++|.+.+++..+.. + -+...|..+-.+|...|++++|.+.|++..+.. +.+...|..+-.. +.+.|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-P--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-C--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 45788889999998887764 1 256689999999999999999999999987643 2366677777777 7789998
Q ss_pred -HHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 221 -NKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 221 -~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
++|...|++..... |+ ...|..+-..|.+.|+.
T Consensus 97 ~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~ 131 (177)
T 2e2e_A 97 TAQTRAMIDKALALD----SNEITALMLLASDAFMQANY 131 (177)
T ss_dssp CHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcccH
Confidence 99999999998854 54 66777777788887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0038 Score=52.95 Aligned_cols=142 Identities=11% Similarity=-0.011 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---C-CCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---G-ELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~-~~~~~~t~~~li~~~~~~g 183 (258)
.++|++.|++......-.++ ..+|..+-..+...|+.++|...+++..+... . ......+++.+-.+|...|
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 45677777666532211222 33555566666677777777666666543210 0 0012335666666677777
Q ss_pred ChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~ty~~li~~~~~ 253 (258)
++++|.+.|++..+. |-.+ ...+++.+=..|...|+.++|.+.|++... ... ....++..+-..|.+
T Consensus 197 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 197 HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCK 273 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHHHH
Confidence 777777776665431 1111 123455556666667777777777766655 321 123455555555665
Q ss_pred cCC
Q 047392 254 YGM 256 (258)
Q Consensus 254 ~g~ 256 (258)
.|+
T Consensus 274 ~g~ 276 (378)
T 3q15_A 274 AGQ 276 (378)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.017 Score=47.08 Aligned_cols=121 Identities=8% Similarity=-0.053 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~ 182 (258)
..++|++.|++......-.++ ..+|+.+-..|...|++++|.+.|++..+. .........+|..+-..|.+.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 367999999998753222233 346899999999999999999999998742 011111234788999999999
Q ss_pred CChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHhH
Q 047392 183 GLVNEALATFYRMKQ----FRCRPD-VYAYNVVINALCRVGN-FNKARFLLEQME 231 (258)
Q Consensus 183 g~~~~a~~l~~~M~~----~g~~p~-~~ty~~li~~~~~~g~-~~~a~~~f~~M~ 231 (258)
|++++|.+.+++..+ .+..+. ..+|..+=..+.+.|+ .++|.+.|++..
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999998754 333333 5778888888899994 699998888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0029 Score=44.06 Aligned_cols=98 Identities=7% Similarity=0.009 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g~~~ 186 (258)
.+++|.+.|++.... .+.+...|..+...+.+.|++++|...+++..+.......+ ..+|..+-.+|.+.|+++
T Consensus 19 ~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 19 DFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 367999999998754 23467788889999999999999999999987763211112 668899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
+|.+.|++..+.. |+...+..+-.
T Consensus 97 ~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 97 DAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 9999999998753 56655544443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.01 Score=47.39 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=88.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHc--------cCChHHHHHHHHHHHHcCCCCCcCHHHH--------
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFAR--------GNNVKGLWDFLKEMSRRGNGELVTTSTV-------- 172 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~t~-------- 172 (258)
...++|++.|++......-.|. ...+..+-.++.+ .|++++|...|++..+.... +....
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~~~ 142 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN---HELVDDATQKIRE 142 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC---chhHHHHHHHHHH
Confidence 3467999999998754321122 3456667777777 99999999999999887421 11123
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHH
Q 047392 173 ---------TCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRV----------GNFNKARFLLEQ 229 (258)
Q Consensus 173 ---------~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~----~~ty~~li~~~~~~----------g~~~~a~~~f~~ 229 (258)
-.+-..|.+.|++++|...|++..+.. |+ ...+..+-.+|.+. |++++|...|++
T Consensus 143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 445778999999999999999998642 43 45677777777766 899999999999
Q ss_pred hHhCC
Q 047392 230 MELPG 234 (258)
Q Consensus 230 M~~~~ 234 (258)
.....
T Consensus 221 ~~~~~ 225 (261)
T 3qky_A 221 LLQIF 225 (261)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 98754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0063 Score=46.53 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN--------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~--------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li 176 (258)
.+++|++.|++......-.|+ ...|..+-.++.+.|++++|...+++..+.. + .+...|..+-
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p--~~~~~~~~lg 129 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K--NNVKALYKLG 129 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c--ccHHHHHHHH
Confidence 366999999988743211221 2678888889999999999999999998863 2 2567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhHhCC
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQMELPG 234 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~-~~f~~M~~~~ 234 (258)
.+|...|++++|.+.|++..+.. +-+...+..+-..+.+.++.+++. ..|..|...+
T Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 130 VANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999987642 235677777878888888877776 6677776544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0022 Score=59.45 Aligned_cols=136 Identities=10% Similarity=-0.108 Sum_probs=106.3
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|++.|++..+.. +-+...|..+-..+.+.|++++|.+.|++..+..-. +...|..+-.+|.+.|++++
T Consensus 446 ~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---ELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCCCT-
T ss_pred cCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHH-
Confidence 345889999999887431 245678888889999999999999999998886421 44578999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH-HHHHHHHHHHHHcC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYG 255 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~-~ty~~li~~~~~~g 255 (258)
.+.|++..+.. +-+...|..+-..+.+.|+.++|.+.|++..+.. |+. ..|..+..++...|
T Consensus 520 ~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 520 HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS----RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS----TTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC----cccHHHHHHHHHHHHccC
Confidence 99999987643 3366788999999999999999999999998744 764 45655555554433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.01 Score=46.21 Aligned_cols=131 Identities=12% Similarity=-0.027 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh---
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN----NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--- 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--- 181 (258)
..+.++|++.|++..+. | +...+..|-..|.. + +.++|.+.|++-.+.| +...+..|-..|..
T Consensus 31 ~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCGGG
T ss_pred CCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 45588888888887743 2 55666666666666 6 7888888888887776 45567777777776
Q ss_pred -cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 -EGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 -~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++.++|.+.|++..+.|.. -+...+..|=..|.. .++.++|.++|++-...+ .+...+..|=..|.+
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS----RTGYAEYWAGMMFQQ 174 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS----CTTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHc
Confidence 78888898888888876521 126677777777777 778888999998888753 787777666666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0044 Score=50.71 Aligned_cols=121 Identities=8% Similarity=-0.065 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHH---cC-CCCCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFFH--FFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSR---RG-NGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~--~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g-~~~~~~~~t~~~li~~~~~~ 182 (258)
..++|++.|++...... ..+. ..+|+.+-..|...|++++|.+.|++..+ .. ..+.....+|+.+-..|.+.
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence 47799999988763211 1122 45888999999999999999999998763 21 11111225899999999999
Q ss_pred CChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHhH
Q 047392 183 GLVNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFNKA-RFLLEQME 231 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~----g~~p~-~~ty~~li~~~~~~g~~~~a-~~~f~~M~ 231 (258)
|++++|.+.+++..+. +.... ..+|..+-..|.+.|+.++| ...|++-.
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999987642 22222 57788888899999999999 77777653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.045 Score=42.38 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----c
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----E 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~ 182 (258)
+.++|++.|++..+. -+...+..|-..|.. .++.++|.+.|++-.+.|... -+...+..|=..|.. .
T Consensus 68 ~~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-AAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-HHHHHHHHHHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCC
Confidence 689999999998743 356677777777776 789999999999988776210 015578888888888 8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhHhCC
Q 047392 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-G-----NFNKARFLLEQMELPG 234 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~-g-----~~~~a~~~f~~M~~~~ 234 (258)
++.++|.+.|++-.+. ..+...+..|=..|.+. | +.++|.++|++-.+.|
T Consensus 143 ~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8999999999998876 23555666666666664 3 8999999999998876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0053 Score=54.35 Aligned_cols=121 Identities=12% Similarity=-0.026 Sum_probs=89.6
Q ss_pred CCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 102 ~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
.+..+......++|++.|++..+. -+-+...|..+-.++.+.|++++|.+.+++..+.. | -+...|..+-.+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p-~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--K-KYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--T-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHH
Confidence 344444455688999999998753 22357889999999999999999999999998874 2 256789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINA--LCRVGNFNKARFLLE 228 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~--~~~~g~~~~a~~~f~ 228 (258)
.|++++|.+.|++..+.. +-+...+..+-.+ +.+.|++++|.++++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999987642 1133344444444 888899999999998
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.02 Score=38.73 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... .+.+...+..+...+.+.|++++|.+.+++..+.. | .+...+..+..+|...|++++|.+
T Consensus 19 ~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 19 NIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--P-DWGKGYSRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHHHHHhhHHHHHH
Confidence 367999999998753 23467788888899999999999999999998874 2 256689999999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 94 ~~~~~~~~ 101 (118)
T 1elw_A 94 TYEEGLKH 101 (118)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 99998864
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0022 Score=43.39 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC---CHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP---DVYTYTIL 247 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p---d~~ty~~l 247 (258)
.|..+-..+...|++++|...|++..+.. +.+...|..+-..+.+.|++++|.+.|++..... | +...|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~l 82 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----EDEYNKDVWAAK 82 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cccchHHHHHHH
Confidence 57788889999999999999999987643 3467788889999999999999999999999854 5 47788888
Q ss_pred HHHHHHc-CCC
Q 047392 248 ISSYCKY-GMQ 257 (258)
Q Consensus 248 i~~~~~~-g~~ 257 (258)
-..|.+. |+.
T Consensus 83 ~~~~~~~~~~~ 93 (112)
T 2kck_A 83 ADALRYIEGKE 93 (112)
T ss_dssp HHHHTTCSSCS
T ss_pred HHHHHHHhCCH
Confidence 8888888 765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0078 Score=40.75 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+...|..+-..+.+.|++++|.+.|++..+.. | .+...|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455556666666677777777776666553 1 1445566666666677777777777766655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00094 Score=54.56 Aligned_cols=146 Identities=10% Similarity=-0.039 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhh---CCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERF---FHFF-HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~---~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~ 184 (258)
.++|.+.|++.... .+-. ....++..+...+...|++++|.+.+++..+... .+.....++..+...|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 56777777664321 1111 1234677788889999999999999988765411 111123478889999999999
Q ss_pred hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC---CCCCHHHHHHHHHHHHHcCC
Q 047392 185 VNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---CPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 185 ~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~---~~pd~~ty~~li~~~~~~g~ 256 (258)
+++|.+.+++..+. +-.+ ...++..+-..+.+.|++++|...|++.....-. ......++..+-..|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987642 1111 1567788888999999999999999988653100 00113467777788888776
Q ss_pred C
Q 047392 257 Q 257 (258)
Q Consensus 257 ~ 257 (258)
.
T Consensus 319 ~ 319 (338)
T 3ro2_A 319 H 319 (338)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.002 Score=54.42 Aligned_cols=145 Identities=11% Similarity=-0.029 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhh---CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERF---FHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~---~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~ 184 (258)
.++|.+.|++.... .+-.| ...+|..+-..+...|++++|.+.+++..+... .+.....+|..+-..|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 56777777664321 11111 234677888889999999999999988765411 111123478889999999999
Q ss_pred hHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC----HHHHHHHHHHHHHcC
Q 047392 185 VNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTILISSYCKYG 255 (258)
Q Consensus 185 ~~~a~~l~~~M~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd----~~ty~~li~~~~~~g 255 (258)
+++|.+.+++..+. +-.+. ..++..+-..+.+.|++++|.+.|++.....-. ..+ ..+|..+-..|.+.|
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999987642 21111 567888888999999999999999988653210 022 456777777777777
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 322 ~~ 323 (406)
T 3sf4_A 322 NH 323 (406)
T ss_dssp CH
T ss_pred CH
Confidence 64
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0054 Score=54.56 Aligned_cols=122 Identities=7% Similarity=-0.048 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFF--HFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~--~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~~~li~~~~ 180 (258)
.++|.+++++..... -+-|+ ..+++.|...|...|++++|..++++..+- |-.-.-...+++.|-..|.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567888877654321 12232 557999999999999999999998886543 2221123457999999999
Q ss_pred hcCChHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 181 EEGLVNEALATFYRMKQ-----FR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~-----~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
..|++++|+.++++..+ .| .+-...+.+.+-.++...|..++|+.+|.++++.
T Consensus 405 ~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 33 2222344566667777889999999999999763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0089 Score=50.65 Aligned_cols=121 Identities=8% Similarity=0.012 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g 183 (258)
.++|++.|++..+-..-.+ ...+++.+-..|...|++++|.+.|++..+.... +.....+++.+-.+|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 4566766666543211112 2457888889999999999999999887654110 1112347888999999999
Q ss_pred ChHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQ----FRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|.+.|++..+ .+. +....++..+-..+.+.|+.++|.+.|++...
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999876 233 44567788899999999999999999998765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0008 Score=45.95 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-------
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD------- 240 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd------- 240 (258)
+...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|.+.|++..... |+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT----STAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----SSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCccHHHHH
Confidence 44568888899999999999999999987642 3467888888899999999999999999999754 66
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047392 241 VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 241 ~~ty~~li~~~~~~g~~ 257 (258)
...+..+-.++...|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 55677666666666553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0055 Score=44.08 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~~~~~g~ 184 (258)
+++|++.|++..+...-.++ ..++..+-..+...|++++|.+.+++..+.. -.+......+..+-..|...|+
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh
Confidence 45777777665432110112 2467778888999999999999998866541 1111124568888889999999
Q ss_pred hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 185 VNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 185 ~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+++|.+.+++..+. +..+ ...++..+-..+...|+.++|.+.+++...
T Consensus 105 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999987642 2111 235677788888999999999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0061 Score=53.97 Aligned_cols=91 Identities=10% Similarity=-0.011 Sum_probs=77.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
..+.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|++.+++..+.. +-+...|..+-.+|.+.|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34567899999999999988863 2 257789999999999999999999999998753 3467888999999999999
Q ss_pred HHHHHHHHHHhHhCC
Q 047392 220 FNKARFLLEQMELPG 234 (258)
Q Consensus 220 ~~~a~~~f~~M~~~~ 234 (258)
+++|.+.|++..+..
T Consensus 90 ~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 90 FRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0043 Score=52.37 Aligned_cols=147 Identities=12% Similarity=0.009 Sum_probs=101.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHh
Q 047392 109 TLGINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~ 181 (258)
....++|.+.|++......-.++ ..+|..+-..+...|++++|...+++..+... .+.....++..+-..|.+
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 34467888888876532111122 33788888999999999999999988765411 011115578899999999
Q ss_pred cCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~ 252 (258)
.|++++|.+.|++..+. +-.+ ...+|..+-..|.+.|++++|.+.|++.... +.. .....++..+-..+.
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK-SGELTARLNLSDLQM 358 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHH
Confidence 99999999999997652 2111 1567888888999999999999999987542 211 022345666666676
Q ss_pred HcCC
Q 047392 253 KYGM 256 (258)
Q Consensus 253 ~~g~ 256 (258)
..|+
T Consensus 359 ~~g~ 362 (406)
T 3sf4_A 359 VLGL 362 (406)
T ss_dssp HHHT
T ss_pred HhhH
Confidence 6664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.012 Score=41.72 Aligned_cols=88 Identities=10% Similarity=-0.063 Sum_probs=72.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|++..+. -+.+...|..+-.++.+.|++++|.+.|++..+.. | -+...|..+-.+|...|++++|.
T Consensus 27 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~~~~~~A~ 101 (126)
T 4gco_A 27 GDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--S-KFIKGYIRKAACLVAMREWSKAQ 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--h-hhhHHHHHHHHHHHHCCCHHHHH
Confidence 4467999999997643 23467889999999999999999999999988864 2 25668999999999999999999
Q ss_pred HHHHHHHhCCCCCCH
Q 047392 190 ATFYRMKQFRCRPDV 204 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~ 204 (258)
+.|++..+. .|+-
T Consensus 102 ~~~~~al~l--~P~~ 114 (126)
T 4gco_A 102 RAYEDALQV--DPSN 114 (126)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHHH--CcCC
Confidence 999998874 3543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.003 Score=51.44 Aligned_cols=125 Identities=11% Similarity=-0.017 Sum_probs=90.7
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHh
Q 047392 109 TLGINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~ 181 (258)
....++|.+.|++..+...-.++ ..++..+...+.+.|++++|.+.+++..+... .+.....++..+-..|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 34467888888776432110122 33778888899999999999999988765411 011125578889999999
Q ss_pred cCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 182 EGLVNEALATFYRMKQF----RC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~----g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.|++++|.+.+++..+. +- .....++..+-..+.+.|++++|.+.|++....
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999997652 11 112457788889999999999999999998864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0016 Score=55.45 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=30.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRG--N-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.|..+-..+...|++++|.+.+++..+.. . .......++..+-..|...|++++|.+.|++..
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555555543320 0 001122345555555555555555555555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.014 Score=49.75 Aligned_cols=115 Identities=13% Similarity=0.011 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC--------------CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG--------------NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
..|..+-..+.+.|++++|.+.|++..+.- .. ..+...|+.+-.+|.+.|++++|++.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 346777788999999999999999887610 00 124567899999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHH
Q 047392 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCK 253 (258)
Q Consensus 199 g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~ 253 (258)
. +-+...|..+-.+|.+.|++++|.+.|++..+.. |+ ...+..+-..+.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQK 353 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 3 3367788888899999999999999999998753 54 4455555444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0068 Score=51.41 Aligned_cols=122 Identities=8% Similarity=-0.038 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CCCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFH----FFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--N-GELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~----~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~t~~~li~~~~~~g 183 (258)
.+.|++.|++..+... ..+ ...+++.+-..|...|++++|.+.|++..+.. . .+.....+++.|-.+|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5567776666543211 111 25578888889999999999999998876531 1 11113447888889999999
Q ss_pred ChHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 184 LVNEALATFYRMKQ----FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
++++|.+.|++..+ .+.+....++..+-..+.+.|+.++|...|++....
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999876 133334678888889999999999999999998763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.017 Score=50.65 Aligned_cols=115 Identities=12% Similarity=-0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--------------TSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--------------~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
...|..+-..+.+.|++++|...|++..+.. |... ...|..+-.+|.+.|++++|+..|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456777788888999999999998887652 2111 46788888899999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCK 253 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~ 253 (258)
.. +-+...|..+-.+|.+.|++++|...|++..... |+-. .|..+-..+.+
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQISMCQKK 397 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 43 3367778888888889999999999999988743 5433 45544444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.033 Score=39.53 Aligned_cols=81 Identities=9% Similarity=-0.001 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
+++|++.|++..+ ..|+ ...|..+-..+.+.|++++|.+.+++..+.. | -+...|..+-.+|...|++++
T Consensus 44 ~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~ 117 (148)
T 2dba_A 44 YGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--G-GDVKALYRRSQALEKLGRLDQ 117 (148)
T ss_dssp HHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--S-CCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--c-cCHHHHHHHHHHHHHcCCHHH
Confidence 5699999999874 3466 6778888899999999999999999988763 2 256678899999999999999
Q ss_pred HHHHHHHHHhC
Q 047392 188 ALATFYRMKQF 198 (258)
Q Consensus 188 a~~l~~~M~~~ 198 (258)
|.+.|++..+.
T Consensus 118 A~~~~~~al~~ 128 (148)
T 2dba_A 118 AVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0066 Score=49.91 Aligned_cols=126 Identities=13% Similarity=-0.010 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++|.++|+.+... .|+....-.+-..+.+.+++++|...|+..... +.+. ...+..+=.++...|++++|+
T Consensus 118 y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~eAl 191 (282)
T 4f3v_A 118 YADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAAANLALFTEAE 191 (282)
T ss_dssp HHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHHHHCCCHHHHH
Confidence 67999999887632 255444444556788999999999999854332 2111 235666777899999999999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 190 ATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 190 ~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+.|++.......|. .......-.++.+.|+.++|..+|+++.... |+...+..|
T Consensus 192 ~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~----P~~~~~~aL 247 (282)
T 4f3v_A 192 RRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH----PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----CCHHHHHHH
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHHHHHH
Confidence 99999985443354 2345566677889999999999999999855 884444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0099 Score=40.97 Aligned_cols=79 Identities=14% Similarity=-0.019 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
+|++.|++.... -+.+...|..+-..+.+.|++++|...|++..+.. | -+...|..+-.+|...|++++|...|+
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--P-TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355555555421 22345556666666666666666666666666543 1 134456666666666666666666666
Q ss_pred HHHh
Q 047392 194 RMKQ 197 (258)
Q Consensus 194 ~M~~ 197 (258)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.025 Score=39.36 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.+++|.+.|++..... |+. ..+..+-.++.+.|++++|...|++..+...........+..+-.+|.+.|+++
T Consensus 17 ~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~ 93 (129)
T 2xev_A 17 KYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93 (129)
T ss_dssp CHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence 4679999999987543 332 466778888999999999999999998864211001456888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 047392 187 EALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ 205 (258)
+|.+.|++..+.. |+..
T Consensus 94 ~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 94 EAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHHHHHHHC--CCCh
Confidence 9999999998743 5543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.02 Score=39.95 Aligned_cols=82 Identities=7% Similarity=-0.111 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..+. -+.+...|..+-.++.+.|++++|.+.+++..+.. | -+...|..+-.+|...|++++|.+
T Consensus 19 ~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 19 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--P-NFVRAYIRKATAQIAVKEYASALE 93 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHHhCHHHHHH
Confidence 367999999988753 23467889999999999999999999999998874 2 256689999999999999999999
Q ss_pred HHHHHHh
Q 047392 191 TFYRMKQ 197 (258)
Q Consensus 191 l~~~M~~ 197 (258)
.|++..+
T Consensus 94 ~~~~al~ 100 (126)
T 3upv_A 94 TLDAART 100 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.019 Score=37.21 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHH
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILI 248 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li 248 (258)
..+..+-..|.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|...|++..... | +...+..+-
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCHHHHHHHH
Confidence 345555566666666666666666665432 2245556666666666666777766666666532 3 334444444
Q ss_pred HHHHH
Q 047392 249 SSYCK 253 (258)
Q Consensus 249 ~~~~~ 253 (258)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0084 Score=50.94 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CC
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF----RCR-PD 203 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~----g~~-p~ 203 (258)
..+|..+-..+...|++++|.+.+++..+... .+.....++..+-..|...|++++|.+.|++..+. +-. ..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45555556666666666666555555443210 00001224555555666666666666655554431 100 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
..+|..+-..+.+.|++++|.+.|++..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555666666665555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0026 Score=44.31 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++|++.|++..+. + -+-+...|..+-..+.+.|++++|.+.|++..+.... +...+..+-.+|.+.|++++|.
T Consensus 6 ~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 6 EAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCCHHHHH
Confidence 45778888887632 1 1223567888888999999999999999999887421 4668899999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047392 190 ATFYRMKQF-RCRPDVYAYNVVINAL 214 (258)
Q Consensus 190 ~l~~~M~~~-g~~p~~~ty~~li~~~ 214 (258)
+.|++..+. .-.|+...|...|..|
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999998763 2223333344444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.016 Score=41.73 Aligned_cols=83 Identities=7% Similarity=-0.072 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... -+.+...|..+-.++.+.|++++|...|++..+.. | -+...|..+-.+|...|++++|.+
T Consensus 33 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 33 KWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--I-NEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHcCCHHHHHH
Confidence 367999999998743 22467788888899999999999999999998874 2 144578889999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 108 ~~~~al~~ 115 (142)
T 2xcb_A 108 GFYSARAL 115 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.013 Score=44.21 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHh---hCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVER---FFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~---~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~g 183 (258)
+++|.+.|++... ..+..| ...++..+-..+...|++++|.+.+++..+. +-.+......+..+-..+...|
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC
Confidence 5577777776543 112212 2456777888899999999999999886554 2111123456888889999999
Q ss_pred ChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQ----FRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|.+.+++..+ .+-.. -..++..+-..+.+.|++++|.+.|++...
T Consensus 122 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999764 22111 123467777888899999999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.015 Score=42.95 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... -+-+...|..+-.++.+.|++++|.+.|++..+.. |. +...|..+-.+|.+.|++++|.+.
T Consensus 52 ~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~-~~~~~~~lg~~~~~lg~~~eA~~~ 126 (151)
T 3gyz_A 52 IEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KN-DYTPVFHTGQCQLRLKAPLKAKEC 126 (151)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SS-CCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CC-CcHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999998753 23457788899999999999999999999998864 21 445789999999999999999999
Q ss_pred HHHHHhCCCCCCHH
Q 047392 192 FYRMKQFRCRPDVY 205 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ 205 (258)
|++..+.. ||..
T Consensus 127 ~~~al~l~--~~~~ 138 (151)
T 3gyz_A 127 FELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHC--CCHH
T ss_pred HHHHHHhC--CCHH
Confidence 99998743 6654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.035 Score=40.80 Aligned_cols=83 Identities=7% Similarity=-0.075 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..+.. +-+...|..+-.++.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|.+
T Consensus 26 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--P-KYSKAWSRLGLARFDMADYKGAKE 100 (164)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHccCHHHHHH
Confidence 3679999999987532 2467888999999999999999999999998874 2 256789999999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 101 ~~~~al~~ 108 (164)
T 3sz7_A 101 AYEKGIEA 108 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0079 Score=49.61 Aligned_cols=98 Identities=8% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPDV- 204 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~- 204 (258)
.+|+.+-..|.+ |++++|.+.|++-.+.... +.....+++.+-..|.+.|++++|++.|++... .+..++.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345555555555 6666666666655443100 000123556666666666666666666666543 1211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.+|..+...+...|+.++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 244444455555566666666666666
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.017 Score=40.68 Aligned_cols=86 Identities=10% Similarity=-0.163 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+...|..+-..+.+.|++++|...|++..... +.+...|..+-..+.+.|++++|...|++.....- -+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG---QSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---hhHHHHHHH
Confidence 56789999999999999999999999987643 34578889999999999999999999999988541 346678888
Q ss_pred HHHHHHcCCC
Q 047392 248 ISSYCKYGMQ 257 (258)
Q Consensus 248 i~~~~~~g~~ 257 (258)
-..|.+.|+.
T Consensus 84 ~~~~~~~~~~ 93 (137)
T 3q49_B 84 GQCQLEMESY 93 (137)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHHhhH
Confidence 8888888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.016 Score=45.35 Aligned_cols=99 Identities=11% Similarity=-0.077 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNV 209 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~ 209 (258)
.+-.+...+.+.|++++|...|+++.+...........+..+..+|.+.|++++|...|++..+.. |+. ..+-.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHH
Confidence 344456678889999999999999988632111123467788899999999999999999988632 332 12322
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCR------------------VGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~------------------~g~~~~a~~~f~~M~~~~ 234 (258)
+-.++.+ .|+.++|...|++.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 3333332 578999999999999854
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.026 Score=47.39 Aligned_cols=145 Identities=11% Similarity=0.027 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC--C-CCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGN--G-ELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~-~~~~~~t~~~li~~~~~~g~ 184 (258)
.++|.+.+++...... ..+. .+++.+-..+...|++++|.+.+++..+..- . +.....+++.+-..+...|+
T Consensus 30 ~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 30 PDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp HHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 5688888888764321 1222 2455666777788999999988887655311 0 10112345667778888999
Q ss_pred hHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC--CHHHHHHHHHHHHHcC
Q 047392 185 VNEALATFYRMKQ----FRCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTILISSYCKYG 255 (258)
Q Consensus 185 ~~~a~~l~~~M~~----~g~~--p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p--d~~ty~~li~~~~~~g 255 (258)
+++|.+.+++..+ .|-. | ...++..+-..+...|++++|...+++.....-...+ ...+|..+-..+...|
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC
Confidence 9999999888754 2322 2 2345666777788899999999999887653211001 2345666666666666
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 189 ~~ 190 (373)
T 1hz4_A 189 DL 190 (373)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0055 Score=50.59 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCcC-HHHHHHHHHHHHhc
Q 047392 110 LGINKATEFYHWVERFF---HFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN--GELVT-TSTVTCLIKVLGEE 182 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~---~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~-~~t~~~li~~~~~~ 182 (258)
...++|++.|++..... +-.+ ...+|+.+-..+.+.|++++|.+.|++..+... ....+ ...+..+..++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 34666777776654211 1100 134566677777778888888888877665310 00001 22556666667777
Q ss_pred CChHHHHHHHHHHHhCCCCCC---H---HHHHHHHHHHHHcCCHHHHHHH
Q 047392 183 GLVNEALATFYRMKQFRCRPD---V---YAYNVVINALCRVGNFNKARFL 226 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~---~---~ty~~li~~~~~~g~~~~a~~~ 226 (258)
|++++|.+.|++.. . .|+ . .....++.++ ..|+.+.+.++
T Consensus 209 g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 88888888887776 2 232 1 1234444444 56676665553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.029 Score=47.06 Aligned_cols=147 Identities=11% Similarity=-0.034 Sum_probs=94.4
Q ss_pred cCHHHHHHHHHHHHhh---CCCC--C-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCcCHHHHHHHHHHHHh
Q 047392 110 LGINKATEFYHWVERF---FHFF--H-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~---~~~~--p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~t~~~li~~~~~ 181 (258)
..+++|.+.|++.... .+.. | ....+..+-..+...|++++|.+.+++..+.... +.....+|..+-..+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 3356778777765432 1222 2 2345666778888999999999999987765321 11134578888889999
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHhHhCCCCC-CCCHHHHHHHHHHHHHc
Q 047392 182 EGLVNEALATFYRMKQFRCRPD-VYAYN-----VVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKY 254 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~-~~ty~-----~li~~~~~~g~~~~a~~~f~~M~~~~~~~-~pd~~ty~~li~~~~~~ 254 (258)
.|++++|...+++.....-.++ ...+. .....+...|+.++|..++++........ ......+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 9999999999999865311111 11222 23344778999999999999987643210 01133456666667776
Q ss_pred CC
Q 047392 255 GM 256 (258)
Q Consensus 255 g~ 256 (258)
|+
T Consensus 267 g~ 268 (373)
T 1hz4_A 267 GE 268 (373)
T ss_dssp TC
T ss_pred CC
Confidence 65
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=48.17 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.+...+-.+-..+.+.|++++|.+.|++..+.. | -+...+..+-..|.+.|++++|.+.+++.... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS--N-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--T-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 344556667788889999999999999998874 2 15567899999999999999999999998764 366554333
Q ss_pred HHH-HHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 210 VIN-ALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 210 li~-~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
... .+.+.++.++|...|++..... | +...+..+-..|.+.|+.
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHHHHcccH
Confidence 333 3667888889999999998754 5 466788888888888864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.014 Score=43.72 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV-FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+++|++.|+..... .|+...+..+... +.+.+...+|.+.+++..+.. | -+...+..+-.++...|++++|.+
T Consensus 56 ~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P-~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 56 FELAQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN--P-DNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcccHHHHHH
Confidence 56999999887543 2444333322111 223233445788888887763 2 156688999999999999999999
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 191 TFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 191 l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|++..+..=. .+...+..+...+...|+.++|...|.+...
T Consensus 130 ~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 130 LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999875421 2366889999999999999999999987653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.17 Score=44.36 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g 183 (258)
.++|++.|++..+. -+...+..|-..|.. .++.++|.+.|++-.+.| +...+..|-..|.. .+
T Consensus 95 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 95 YAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCC
Confidence 44555555544422 133334444444444 445555555555554443 23334444444444 44
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhC
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELP 233 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~ 233 (258)
+.++|.+.|++..+.| +...+..|-..|.+ .++.++|.++|++-.+.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555555555443 44444444445544 55555555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.022 Score=41.57 Aligned_cols=81 Identities=7% Similarity=-0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... -+.+...|..+-.++.+.|++++|.+.|++..+.. | -+...|..+-.+|...|++++|.+.
T Consensus 37 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p-~~~~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 37 YEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--I-XEPRFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-CCchHHHHHHHHHHHcCCHHHHHHH
Confidence 66999999988743 23467788888899999999999999999998764 2 1445788899999999999999999
Q ss_pred HHHHHh
Q 047392 192 FYRMKQ 197 (258)
Q Consensus 192 ~~~M~~ 197 (258)
|++..+
T Consensus 112 ~~~al~ 117 (148)
T 2vgx_A 112 LFLAQE 117 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.096 Score=37.61 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g~~~ 186 (258)
+.++|++.|++..+. | .|+.. |-..|...+.+++|.+.|++-.+.| +...+..|=..|.. .++.+
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 367999999998854 4 23333 5555666677899999999999887 55678888888888 89999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCC
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~ 235 (258)
+|.+.|++--+.| +...+..|=..|.. .++.++|.++|++-.+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999998876 67777778788888 8999999999999998873
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.29 Score=42.80 Aligned_cols=113 Identities=9% Similarity=0.106 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE---- 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~---- 181 (258)
.+.++|++.|++..+. | +...+..|-..|.. .++.++|.+.|++..+.| +...+..|-..|..
T Consensus 129 ~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-----NVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCC
Confidence 3578999999998754 3 56667777777776 788999999999998876 56678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCC
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPG 234 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~ 234 (258)
.++.++|.+.|++..+.| +...+..+-..|.. .++.++|.++|++....|
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988865 66777777777776 789999999999998765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.04 Score=35.56 Aligned_cols=81 Identities=10% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...|..+-..+.+.|++++|.+.|++..+... -+...+..+-.+|.+.|++++|.+.|++..+.. +-+...+..+-
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45677788888999999999999999887641 256678999999999999999999999987642 22455555554
Q ss_pred HHHHH
Q 047392 212 NALCR 216 (258)
Q Consensus 212 ~~~~~ 216 (258)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.013 Score=52.17 Aligned_cols=91 Identities=10% Similarity=-0.058 Sum_probs=70.7
Q ss_pred HHHccCChHHHHHHHHHHHHcC---CCC-C-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCC-CHHHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRG---NGE-L-VTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FR-CRP-DVYAYN 208 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g---~~~-~-~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g-~~p-~~~ty~ 208 (258)
.+...|++++|..++++..+.. +.+ . -...+++.|...|...|++++|..++++..+ .| -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998866542 222 1 1345799999999999999999999998754 22 223 346789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhH
Q 047392 209 VVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.|-..|...|++++|+.++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999998774
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.036 Score=38.01 Aligned_cols=98 Identities=17% Similarity=0.050 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 149 ~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
++|.+.|++..+.. | -+...+..+-..|...|++++|.+.|++..+.. +.+...|..+-..+.+.|+.++|...|+
T Consensus 2 ~~a~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQG--T-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTT--C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677777776653 2 256789999999999999999999999988753 3457788889999999999999999999
Q ss_pred HhHhCCCCCCCCHHHHHHHHHHH
Q 047392 229 QMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 229 ~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
+.....-. ..+......+...+
T Consensus 78 ~al~~~~~-~~~~~~~~~l~~~l 99 (115)
T 2kat_A 78 SGLAAAQS-RGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHhccc-cccHHHHHHHHHHH
Confidence 98763210 13444544444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.033 Score=48.84 Aligned_cols=118 Identities=6% Similarity=-0.057 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~ 177 (258)
..++|++.|++......-.++ ...|..+-.++.+.|++++|...+++..+.. | -+...|..+-.
T Consensus 283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~~~g~ 359 (457)
T 1kt0_A 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--S-ANEKGLYRRGE 359 (457)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-ccHHHHHHHHH
Confidence 366899999887643211111 5788889999999999999999999998864 2 26778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhHh
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQMEL 232 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~-~~f~~M~~ 232 (258)
+|...|++++|...|++..+.. +-+...|..+-..+.+.|+.+++. .+|..|..
T Consensus 360 a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 360 AQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998742 234567788888888888888766 45666644
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=39.61 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+...+..+-..+.+.|++++|.+.|++..+.... +...|..+-.+|.+.|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555556666666666666666666554311 23356666666666666666666666544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.017 Score=57.25 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=50.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 223 (258)
..|++++|.++.++.. +..+|..+-.++-+.|++++|.+-|.+- -|...|.-++.+|.+.|++++|
T Consensus 1088 ~i~nldrAiE~Aervn--------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHH
Confidence 4455666666655431 2235666666666666666666666442 3555566666666666666666
Q ss_pred HHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 224 ~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.+++..-++.. ++....+.+..+|++.|+
T Consensus 1154 IeyL~mArk~~----~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1154 VKYLQMARKKA----RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHhhc----ccccccHHHHHHHHhhcC
Confidence 66665544432 222222235555555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.019 Score=48.17 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=67.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH------------------HHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS------------------TVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------------------t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
.|..+-..+.+.|++++|...|++..+.. | +.. .|+.+-.+|.+.|++++|++.+++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p--~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--G--DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--C--HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--c--cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666777888888888887766542 2 222 6777777888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.+.. +-+...|..+-.+|...|++++|...|++....
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6632 235677777778888888888888888887653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.019 Score=41.12 Aligned_cols=124 Identities=10% Similarity=-0.051 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF----RCRP-DV 204 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~ 204 (258)
.++..+-..+...|++++|.+.+++..+... .+..-..++..+-..|...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4577788888899999999999988765421 11111247888999999999999999999997642 1111 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
..+..+-..+...|++++|.+.+++.... +.. .....++..+-..|.+.|+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-HhHHHHHHHHHHHHHHccCH
Confidence 56777788888999999999999987643 210 01133566666667676653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.013 Score=51.15 Aligned_cols=94 Identities=15% Similarity=0.048 Sum_probs=73.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC---CCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCC-CHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRG---NGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FR-CRP-DVY 205 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g---~~~--~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g-~~p-~~~ 205 (258)
.+..+.+.|++++|.+++++..+.. +.+ .....+++.|...|...|++++|+.++++..+ .| -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999887652 112 11345799999999999999999999998754 22 223 346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+|+.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78999999999999999999998774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.028 Score=52.05 Aligned_cols=143 Identities=10% Similarity=-0.110 Sum_probs=96.8
Q ss_pred cCHHHHHHHHHHHHhhC---------CCCCC------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC
Q 047392 110 LGINKATEFYHWVERFF---------HFFHN------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~---------~~~p~------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 168 (258)
..++.|.++|+...... +. |+ ...|-..+...-+.|.++.|..+|.+..+.-..+...
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ 470 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD 470 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH
Confidence 34778888888876421 11 32 2367788888888899999999999987761111123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC--CHHHHHH
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTI 246 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p--d~~ty~~ 246 (258)
.....+.+.-. ..++.+.|.++|+...+. ++-+..-|...+......|+.+.|..+|++.....-. + ....|..
T Consensus 471 lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~ 546 (679)
T 4e6h_A 471 IYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQK 546 (679)
T ss_dssp HHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence 33333444322 135689999999998764 3345666778888888899999999999998876411 1 3346777
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
.+.-=.+.|+.
T Consensus 547 ~~~fE~~~G~~ 557 (679)
T 4e6h_A 547 VIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHTCCS
T ss_pred HHHHHHHcCCH
Confidence 77776677764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.025 Score=39.68 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..... +-+...|..+-.++.+.|+.++|...|++..+.. | -+...+..+-.+|.+.|++++|.+
T Consensus 32 ~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P-~~~~~~~~la~~~~~~g~~~~A~~ 106 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P-KDIAVHAALAVSHTNEHNANAALA 106 (121)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3679999999987532 2367788888899999999999999999988864 2 155678899999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 107 ~~~~al~~ 114 (121)
T 1hxi_A 107 SLRAWLLS 114 (121)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99998763
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.016 Score=50.72 Aligned_cols=89 Identities=8% Similarity=-0.093 Sum_probs=68.7
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC-c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 047392 144 RGNNVKGLWDFLKEMSRR---GNGEL-V-TTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FR-CRPD-VYAYNVVI 211 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~---g~~~~-~-~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g-~~p~-~~ty~~li 211 (258)
..|++++|..++++..+. -+.+. | ...+++.|...|...|++++|+.++++..+ .| -.|+ ..+||.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999886553 12221 1 345799999999999999999999999754 23 2333 46699999
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 047392 212 NALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|...|++++|+.+|++-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988743
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.055 Score=53.73 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
+++|++.|.+. -|...|..++.+|.+.|++++|.+++..-++.. + +....+.+..+|++.+++++
T Consensus 1121 ~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~--e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R--ESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c--cccccHHHHHHHHhhcCHHH
Confidence 45555555332 344555666666666666666666665433322 1 11112335555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.058 Score=38.06 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=70.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcCCh
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g~~ 185 (258)
..+++|++.|++..+. -+-+...|+.+-.+|.+.|++++|.+.+++..+.......+ ..+|..+=.+|...|++
T Consensus 22 ~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL 99 (127)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH
Confidence 3467999999987743 23457788889999999999999999999877642111111 23577777888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
++|++.|++-... .||..+..
T Consensus 100 ~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 100 SLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHHhh--CcCHHHHH
Confidence 9999999997663 46765543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.026 Score=47.42 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHH------------------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEV------------------TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~------------------~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
+++|++.|++.... .|+.. .|..+-.++.+.|++++|...+++..+.. | -+...|.
T Consensus 195 ~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~ 268 (338)
T 2if4_A 195 LEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--E-KNPKALF 268 (338)
T ss_dssp CHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--T-TCHHHHH
T ss_pred HHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHH
Confidence 45888888886532 24433 78888899999999999999999988764 2 2667899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHhHhCC
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINA-LCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~-~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+-.+|...|++++|.+.|++..+. .|+ ...+..+-.. ....+..+.+..+|.+|....
T Consensus 269 ~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 269 RRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999998753 343 3344444433 234566788889999987643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.028 Score=37.84 Aligned_cols=87 Identities=15% Similarity=-0.085 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+...+..+-.+|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.|++.....- -.++.....-+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR-EEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh-cCCchhHHHHH
Confidence 55678899999999999999999999998753 23567889999999999999999999998875321 12677777777
Q ss_pred HHHHHHcCC
Q 047392 248 ISSYCKYGM 256 (258)
Q Consensus 248 i~~~~~~g~ 256 (258)
-..+.+.+.
T Consensus 84 ~~~l~~~~~ 92 (100)
T 3ma5_A 84 QDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHccc
Confidence 777666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.099 Score=38.95 Aligned_cols=112 Identities=11% Similarity=-0.041 Sum_probs=83.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV------T-----TSTVTCLIKVLGEEGLVNEALATFYRMKQF----- 198 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~-----~~t~~~li~~~~~~g~~~~a~~l~~~M~~~----- 198 (258)
+...-..+.+.|++++|.+.|++-.+-. |.. + ...|+.+-.++.+.|++++|+..+++-.+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4445566788999999999999987753 320 2 237999999999999999999999998763
Q ss_pred CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHHHHHHHHH
Q 047392 199 RCRPDV-YAY----NVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYTILISS 250 (258)
Q Consensus 199 g~~p~~-~ty----~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~ty~~li~~ 250 (258)
.+.||- ..| ...=.++...|++++|...|++-.+ .|+. +........|..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~--~~~~~~~~~~~~ 151 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET--PGKERMMEVAID 151 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC--TTHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHH
Confidence 124653 456 6777888899999999999998854 4543 666555555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.013 Score=50.83 Aligned_cols=130 Identities=11% Similarity=-0.021 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK-VLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~-~~~~~g~~~~a~~ 190 (258)
.+.|.+.|++..+.. +.+..+|..+-..+.+.|++++|.+.|++..+....+......+..+-. .+...|+.++|++
T Consensus 316 ~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 567777777766432 2334567888899999999999999999988764322111112222222 2356789999999
Q ss_pred HHHHHHhCC-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 191 TFYRMKQFR-----------------------CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 191 l~~~M~~~g-----------------------~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
.|++..+.. -+.+..+|+.+=..|...|+.++|.+.|++-.+.+- ..|+..+|
T Consensus 394 ~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~-~~p~a~~~ 469 (472)
T 4g1t_A 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS-LIPSASSW 469 (472)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCcHhhc
Confidence 988865432 134567788888888889999999999999887653 23665554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.14 Score=44.18 Aligned_cols=101 Identities=11% Similarity=-0.073 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCC--CcCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCC
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGE--LVTTSTVTCLIKVLGEE--GLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~--~~~~~t~~~li~~~~~~--g~~~~a~~l~~~M~~~g~~p 202 (258)
....+|+.+-..|...|++++|...+++..+-. ..+ .....+|+.+-.++.+. +++++|.+.|++..+. .|
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p 169 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KP 169 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CC
Confidence 346788888888999999999988887765421 010 11234555554455444 4688898888887653 24
Q ss_pred C-HHHHHHHHHH---HHHcCCHHHHHHHHHHhHh
Q 047392 203 D-VYAYNVVINA---LCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 203 ~-~~ty~~li~~---~~~~g~~~~a~~~f~~M~~ 232 (258)
+ ...+..+... +...++.++|.+.|++...
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 3 3333333222 3345566666666666655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.056 Score=50.02 Aligned_cols=133 Identities=11% Similarity=0.015 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 109 TLGINKATEFYHWVERF-FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
..+++.|.++|...... ....+......+.+.-.+ .++.+.|..+|+...+. ++- +...|...++.....|+.+.
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~--~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FAT--DGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCC--chHHHHHHHHHHHhCCCHHH
Confidence 34578999999998754 223333443333333222 35599999999998887 433 55567888888888999999
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 188 ALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 188 a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|..+|++.....-.+ ....|...+.-=.+.|+.+.+..+.++|.+.- |+......+++
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~----P~~~~~~~f~~ 582 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF----PEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS----TTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcHHHHHHH
Confidence 999999988754211 34678888888889999999999999999854 66544444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.054 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=77.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVIN 212 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~li~ 212 (258)
.+...+...|++++|.++|+.+...+ | +....-.+-..+.+.|++++|+..|++.... |+. ..+..+=.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--S--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--C--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--C--chHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHH
Confidence 35667888999999999999987654 3 3335566666899999999999999865442 322 24556667
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCCCH--HHHHHHHHHHHHcCC
Q 047392 213 ALCRVGNFNKARFLLEQMELPGFRCPPDV--YTYTILISSYCKYGM 256 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~~~~~pd~--~ty~~li~~~~~~g~ 256 (258)
++.+.|++++|+..|++....... |.. ......-.++.+.|+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~--P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAG--EACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTT--TTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCC--ccccHHHHHHHHHHHHHcCC
Confidence 788999999999999999854422 542 233333344445554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.17 Score=42.94 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...|..+-.++.+.|++++|.+.+++..+.. | -+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35678888889999999999999999998763 2 256688999999999999999999999987742 2256667777
Q ss_pred HHHHHHcCCHHHHHH
Q 047392 211 INALCRVGNFNKARF 225 (258)
Q Consensus 211 i~~~~~~g~~~~a~~ 225 (258)
-..+.+.++.+++.+
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.19 Score=40.75 Aligned_cols=85 Identities=11% Similarity=-0.150 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTI 246 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~ 246 (258)
+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|...|++..... | +...|..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 44568888899999999999999999988742 2377888999999999999999999999998754 4 4567777
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
+-.+|.+.|+.
T Consensus 78 lg~~~~~~g~~ 88 (281)
T 2c2l_A 78 LGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCCH
Confidence 77888887764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.15 Score=44.54 Aligned_cols=86 Identities=8% Similarity=-0.114 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhh--CCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERF--FHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~--~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~~~li~~~~ 180 (258)
.++|.+++++.... .-+-|+ ..+++.|...|...|++++|..++++..+- |-.-.-...+|+.|-..|.
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 57888888775432 122233 467999999999999999999999886544 3221123457999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 047392 181 EEGLVNEALATFYRMKQ 197 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~ 197 (258)
..|++++|+.++++..+
T Consensus 394 ~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 394 GLENKAAGEKALKKAIA 410 (433)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 99999999999998754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.25 Score=35.95 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
...|..+-.++.+.|++++|...+++..+.. | -+...|..+-.+|...|++++|...|++..+. .|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--E-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--C-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 3578888889999999999999999998864 2 25678999999999999999999999998874 36544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.089 Score=34.70 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
...+.+.|++++|.+.|++..+.. | -+.. .|..+-.+|.+.|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--P-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--S-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566788888888888877653 1 1445 6777777788888888888888887664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.18 Score=42.89 Aligned_cols=122 Identities=9% Similarity=-0.000 Sum_probs=62.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-H
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT----STVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPD-V 204 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~ 204 (258)
++..|...|.+.|++++|.+.+.+....--.. .+. .+.+.+=..+...|+.++|.+++.+... .+..+. .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 35566677777777777777776654421000 011 1122222223344666777776666542 222222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELP--GFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~--~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
.++..+...+...|++++|..++++.... +..-+|. ..+|..+...|...|+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 45566666677777777777776665431 1100122 2345555555655554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.65 E-value=1.8 Score=36.75 Aligned_cols=73 Identities=10% Similarity=-0.100 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
+..+|.++-..+...|++++|...+++..+.+ |+...|..+=..+.-.|+.++|.+.|++-.... |...||..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~----P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR----PGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcChHHH
Confidence 77788888888888899999999999999876 887777666677788999999999999998844 88888754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.15 Score=33.53 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
....+.+.|++++|.+.|++..+.. +-+.. .|..+-..+.+.|++++|.+.|++.....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456788999999999999988743 23456 78888889999999999999999998754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.34 Score=35.74 Aligned_cols=64 Identities=9% Similarity=-0.051 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 168 TTSTVTCLIKVLGEEG---LVNEALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g---~~~~a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+..+.-.+-.++++.+ ++++++.+|++..+.. .| ....+-.|=-++.+.|+.++|.++++...+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3333344444444444 3445555555544432 12 112222222333555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.12 Score=38.41 Aligned_cols=92 Identities=11% Similarity=-0.032 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV----------KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
+++|++.|+...+.. +-+...|+.+-.++.+.+++ ++|...|++-.+-. |+ +...|..+=.+|..
T Consensus 18 feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cC-cHHHHHHHHHHHHH
Confidence 666777766665321 23555666666666666654 36666666666543 21 33456666666665
Q ss_pred cC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 182 EG-----------LVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 182 ~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
.| ++++|.+.|++..+. .|+...|..-
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 53 566666666665542 3555544333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.29 Score=42.53 Aligned_cols=87 Identities=6% Similarity=-0.132 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFF--HFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~--~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~~~li~~~ 179 (258)
..++|.+++++..... -+-|+ ..+++.|...|...|++++|..++++..+- |-.-.....+++.|-..|
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~ 381 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQ 381 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHH
Confidence 3678888888876421 12233 557899999999999999999999876543 221112345799999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 047392 180 GEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~ 197 (258)
...|++++|+.++++..+
T Consensus 382 ~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 382 LHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 999999999999998653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.52 Score=43.64 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.+...|..|-..+.+.|+++.|.+.|..+. | |..+...|...|+.+...++-+.....|- |+.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~--------d---~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~ 741 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAH--------D---LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNL 741 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--------C---HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc--------C---hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHH
Confidence 456778888888888888888888887762 3 56666666667777766666665555442 355
Q ss_pred HHHHHHHcCCHHHHHHHHHHhH
Q 047392 210 VINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~ 231 (258)
-..+|.+.|++++|.+++.++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHcC
Confidence 5566777777777777777664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.72 E-value=1.6 Score=38.51 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCK--EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
+++.|.++|+.. ...+ .+...|- +.+...+ .++.+.|..+|+...+.. +- +...+...++-..+.|+.+.|
T Consensus 301 ~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~--~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PD--STLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp CHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CC--CHHHHHHHHHHHHHcCCHHHH
Confidence 477899999888 3322 2333332 3333222 336999999999988763 22 233466677777889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+|+... -....|...+.-=...|+.+.+..+++++..
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999983 2577788888877888999999999988864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.68 E-value=1.5 Score=36.16 Aligned_cols=102 Identities=8% Similarity=-0.069 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-----
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVK--GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL----- 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~----- 184 (258)
+++++++++.+.+. -+.|-.+|+----.+.+.|+.+ ++.++++++.+.... |-..|+-.-..+.+.|+
T Consensus 126 ~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~---N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK---NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccccchhh
Confidence 34666666666542 2234455554444444455555 666666666655321 44445544444444444
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 185 -VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 185 -~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 555555555544321 2233444444333333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.94 Score=38.32 Aligned_cols=123 Identities=10% Similarity=-0.028 Sum_probs=84.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEV----TCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~----~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~ 180 (258)
...+++|.+.+.......+-.++.. ..+.+-..+...|+.++|.+++.+.... +..+ .-..++..|...|.
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF-LKHSLSIKLATLHY 146 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS-SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHH
Confidence 4446788888887654322223322 2222223334568899999988776543 2221 12457888999999
Q ss_pred hcCChHHHHHHHHHHHhC--C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQF--R---CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~--g---~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|++++|..++++.... + -.-...+|..+...|...|++++|..++++...
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999987542 1 122346788999999999999999999988754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=3.9 Score=36.78 Aligned_cols=132 Identities=9% Similarity=-0.039 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN----------VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
++|++.++++-... +-+...|+.-=..+.+.|+ ++++.++++++.+...+ +...|+.--..+.+.
T Consensus 46 eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc
Confidence 48899999887431 2334556654444444555 89999999999987522 677899988899999
Q ss_pred C--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 183 G--LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 183 g--~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
| +++++++.+++|.+.. +-|...|+.---.+.+.| ..+++.+.++++.+... -|...|+..-..+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHh
Confidence 9 7799999999998754 457888888777788888 89999999999998764 466677766665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.63 Score=34.55 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTV 172 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~ 172 (258)
.+++|++.|++..+- .|+ ...|+.+-.++.+.|++++|...+++-.+. -+.| -+...|
T Consensus 26 ~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~ 101 (159)
T 2hr2_A 26 EYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLW 101 (159)
T ss_dssp CHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHH
T ss_pred CHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHH
Confidence 367889998886632 133 238888999999999999999999998775 0123 134466
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 047392 173 ----TCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYAYNVVI 211 (258)
Q Consensus 173 ----~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~ty~~li 211 (258)
...=.++...|++++|+.-|++..+ .|+.+........|
T Consensus 102 ~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7777899999999999999999864 46666555444333
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=93.26 E-value=2.2 Score=36.93 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-H--HhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARG----NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-L--GEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~--~~~g~ 184 (258)
.++|++.|++..+. | .++...+..|-..|... ++.++|.+.|++.. .| +...+..|-.. | ...++
T Consensus 195 ~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 195 QAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----YPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHHHHHHHHHHHHSGGGCC
T ss_pred HHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHHHHHHHHHHHhCCCCCC
Confidence 55666666666532 2 23333333344444333 46666666666655 33 22234444333 2 34566
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhH
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-----NFNKARFLLEQME 231 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-----~~~~a~~~f~~M~ 231 (258)
.++|.+.|++-.+.| +...+..|=..|. .| +.++|.++|++-.
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 666666666666554 4444444444443 33 5556666555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.07 E-value=3.2 Score=34.17 Aligned_cols=137 Identities=8% Similarity=-0.005 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hcc---CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVF----ARG---NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g 183 (258)
.+++++++++.+.... +-+..+|+---..+ .+. ++++++.++++.+.+... -|-..|+---..+.+.|
T Consensus 84 ~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p---kny~aW~~R~~vl~~l~ 158 (306)
T 3dra_A 84 NLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP---KNHHVWSYRKWLVDTFD 158 (306)
T ss_dssp CHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhc
Confidence 4779999999987532 23344455433333 344 789999999999998752 27788999988999999
Q ss_pred ChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 184 LVN--EALATFYRMKQFRCRPDVYAYNVVINALCRVGN------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 184 ~~~--~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~------~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++ ++++.+++|.+.. .-|...|+---..+.+.|+ ++++.+.++++..... -|...|+.+-..+.+.|
T Consensus 159 ~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p---~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 159 LHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP---QNPSTWNYLLGIHERFD 234 (306)
T ss_dssp CTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS---SCHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC---CCccHHHHHHHHHHhcC
Confidence 988 9999999998754 3577788766666666666 8999999999988663 46667877776676666
Q ss_pred C
Q 047392 256 M 256 (258)
Q Consensus 256 ~ 256 (258)
+
T Consensus 235 ~ 235 (306)
T 3dra_A 235 R 235 (306)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=92.91 E-value=1.7 Score=37.64 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc----CCh
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN---NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE----GLV 185 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~----g~~ 185 (258)
+.+..+++.... ..|+ .+..|-..|.+.| +.++|.+.|++-.+.|. ++...+..|-..|... ++.
T Consensus 162 ~~a~~~~~~a~~---~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~---~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 162 DDVERICKAALN---TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT---VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHHTT---TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHHc---CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCCCH
Confidence 344455544432 1243 6777888888899 88999999999998873 3554446666666555 799
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHhHhCC
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINA-L--CRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~-~--~~~g~~~~a~~~f~~M~~~~ 234 (258)
++|.+.|++.. .| +...+..|=.. + ...++.++|.++|++-.+.|
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999987 44 44444444444 2 45899999999999998776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=92.32 E-value=2.1 Score=30.27 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g 183 (258)
+++|++.|++..+. -+...+..|-..|.. .++.++|.+.|++-.+.| +...+..|=..|.. .+
T Consensus 41 ~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 41 KQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCc
Confidence 56799999998754 466777777777877 789999999999999887 55578888888888 89
Q ss_pred ChHHHHHHHHHHHhCCC
Q 047392 184 LVNEALATFYRMKQFRC 200 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~ 200 (258)
+.++|.+.|++-.+.|.
T Consensus 112 d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 112 NEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999988774
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.29 E-value=1.1 Score=30.04 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN----GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
..-|-.|-..+.+.|+++.|...|++-.+.-- ........+..|-.+|.+.|++++|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455566666777777777777777555310 0012344667777777777777777777777665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.94 E-value=1.4 Score=30.02 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
-++.+-++.+-...+.|++....+.+.+|=|.+++..|.++|+-.+.+ |.+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K---~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCchhhHHHHHH
Confidence 344444455555555555555555555555555555555555555543 2233334555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=5.2 Score=35.93 Aligned_cols=135 Identities=10% Similarity=-0.048 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN--NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a 188 (258)
.++++++++.+-+. -+-+..+|+----.+.+.| +++++.++++++.+... -|.+.|+.--..+.+.| ..+++
T Consensus 89 ~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~---~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 89 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc---ccccHHHHHHHHHHHcCCChHHH
Confidence 67899999998753 2356667777666777888 67999999999999852 27788999988899999 89999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRV--------------GNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCK 253 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------------g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~ 253 (258)
++.++++.+.. .-|...|+..-..+.+. +.++++.+.+++..... | |...|..+-..+.+
T Consensus 164 l~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~----P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC----SSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHhc
Confidence 99999998754 45778888877777663 55789999999888744 4 45566665555554
Q ss_pred cCC
Q 047392 254 YGM 256 (258)
Q Consensus 254 ~g~ 256 (258)
.|+
T Consensus 239 ~~~ 241 (567)
T 1dce_A 239 AEP 241 (567)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.52 E-value=1.2 Score=32.99 Aligned_cols=102 Identities=20% Similarity=0.121 Sum_probs=78.8
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL----------VNEALATFYRMKQFRCRP-DVYAYNVVI 211 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~----------~~~a~~l~~~M~~~g~~p-~~~ty~~li 211 (258)
.|.+.+++|.+.+++-.+..- -+...|+.+=.++...++ +++|+..|++..+.. | +...|..+=
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P---~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHH
Confidence 455678899999999887742 256677777777777766 469999999998743 5 556788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 212 NALCRV-----------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 212 ~~~~~~-----------g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.+|... |++++|.+.|++..+. .|+-..|..-+...-+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l----~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE----QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHT
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHh
Confidence 888776 4899999999999984 4999999888776544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=1.2 Score=37.99 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=55.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA 206 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 206 (258)
...++..+...|+.+++...+..+.... + .+...|..+|.+|.+.|+..+|++.|++..+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-P--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556777788899999988888887663 2 3777899999999999999999999988754 589998776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=5.9 Score=33.27 Aligned_cols=136 Identities=6% Similarity=-0.057 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-C-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH---
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARG-N-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN--- 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~--- 186 (258)
+++++++++.+... -+-+..+|+----.+.+. + +.+++.++++.+.+... -|-..|+---..+.+.|..+
T Consensus 105 l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp---kNy~AW~~R~wvl~~l~~~~~~~ 179 (349)
T 3q7a_A 105 LEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP---KNYHTWAYLHWLYSHFSTLGRIS 179 (349)
T ss_dssp HHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT---TCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccccccc
Confidence 67889999888742 345566777655555554 5 78889999999887642 26677877766666666666
Q ss_pred -----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 187 -----EALATFYRMKQFRCRPDVYAYNVVINALCRVGN-------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 187 -----~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-------~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
++++.++++.+.. .-|...|+---..+.+.++ ++++.+.+++...... -|...|+.+-..+.+.
T Consensus 180 ~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P---~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 180 EAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP---HNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc
Confidence 8899999888754 3577888887777777776 6889999988887652 3566677666555555
Q ss_pred CC
Q 047392 255 GM 256 (258)
Q Consensus 255 g~ 256 (258)
|+
T Consensus 256 ~~ 257 (349)
T 3q7a_A 256 SL 257 (349)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.92 E-value=4 Score=30.71 Aligned_cols=95 Identities=7% Similarity=-0.053 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++.|.++-+++ -+...|..|-....+.|+++-|.+.|.... | |..|.--|.-.|+.++-.++
T Consensus 21 l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D---~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 21 LDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH--------S---FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------C---HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------C---HHHHHHHHHHhCCHHHHHHH
Confidence 56777776655 367789999999999999999999887752 4 66676677777777776666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
-+.-...| -+|.-...+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544443 1455566666666777666666544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.58 E-value=2.5 Score=27.85 Aligned_cols=63 Identities=11% Similarity=-0.076 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 171 TVTCLIKVLGEEGL---VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 171 t~~~li~~~~~~g~---~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+..+-.++...++ .++|..+|++..+.. +-++.....+=..+.+.|++++|...|+++....
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444433332 455666665555421 1122333333344555666666666666665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.35 E-value=3.9 Score=29.64 Aligned_cols=67 Identities=19% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~ 236 (258)
..-++.-++.....|+-|+-.++..+... +-+|++.-.-.+-.+|.+.|+..+|.+++.+-.++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33567778888888999999999998643 44688888889999999999999999999999999963
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.70 E-value=2.4 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+..+-++.+-...+.|++....+.+.+|=|.+++..|.++|+-.+.+ |.+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K---~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCCchhhHHHHHH
Confidence 34444444444555555555555555555555555555555555543 2244444555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=89.36 E-value=5.2 Score=35.19 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~--~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
..|-..+...-+.+.++.|..+|+.. +. |..+..+|- +.+...+ .++.+.|..+|+...+.. .-+...|...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~y 360 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN---EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 34555566666678899999999988 32 222444454 3333333 337999999999987642 1234456677
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 047392 211 INALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M 230 (258)
++-..+.|+.+.|..+|++.
T Consensus 361 id~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88788899999999999886
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=89.20 E-value=3.5 Score=27.46 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQF------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
+..-+-.|=..+.+.|+++.|...|++..+. +-.+....|..|-.++.+.|+++.|..++++..... |+-
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~----P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD----PEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCC
Confidence 4445667778888999999999999886542 123567788889999999999999999999998733 664
Q ss_pred H
Q 047392 242 Y 242 (258)
Q Consensus 242 ~ 242 (258)
.
T Consensus 80 ~ 80 (104)
T 2v5f_A 80 Q 80 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=2.5 Score=35.99 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYT 243 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~t 243 (258)
....++..+...|+.++|...+...... .+.+...|-.+|.++.+.|+..+|.+.|++... .|+. |...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~--P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID--PGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC--CCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--CCHHH
Confidence 3567888899999999999999988653 255788999999999999999999999998754 4755 88776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=88.61 E-value=5.5 Score=33.79 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
+.+..+|.++-..+...|++++|...+++..+.+ | +...|..+=..+.-.|+.++|.+.|++-... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5678888888777777899999999999999875 4 7777777778889999999999999987764 48888773
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=11 Score=31.57 Aligned_cols=133 Identities=5% Similarity=-0.111 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc-C-ChHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE-G-LVNEALA 190 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~-g-~~~~a~~ 190 (258)
+|+++++++... -+-+...|+.-=..+...| .+++++++++.+.....+ +...|+.--..+.+. + +.+++++
T Consensus 72 ~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 72 RALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 789999988743 1234556776666666677 599999999999987522 566788888888777 7 8999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFN--------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~--------~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++.+.+.. +-|...|+----.+.+.|..+ ++.+.++++.+... -|...|+..-..+.+.|
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp---~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG---RNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHTTST
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcc
Confidence 999998643 456777766555555555555 99999999998763 46666666555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.75 E-value=5.2 Score=29.26 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN---NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
+..+.+.|.+.... +. ++..+--.+--+++++. +++++..++++..+.. .|.-+...+-.|--+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 44556666665532 33 66666666778889988 5679999999998874 1211122233445566999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 047392 189 LATFYRMKQFRCRPD 203 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~ 203 (258)
.+.++...+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999873 474
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=87.28 E-value=4.5 Score=29.35 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~ 201 (258)
+....+..++.+...|+-++-.+++.++... .+| +....-.+-.+|.+.|+..+|.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~--~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEV--SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCC--ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455678889999999999999999996443 334 5556788899999999999999999999888863
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.11 E-value=4.7 Score=26.48 Aligned_cols=67 Identities=6% Similarity=-0.069 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 130 HNEVTCKEMGIVFARGNN---VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
.|...+..+-.++...++ .++|..++++..+..- -++.....+=..+.+.|++++|...|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp---~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP---YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666677754444 6899999999888742 245566667788899999999999999998753
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.35 E-value=7 Score=36.48 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 216 RVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 216 ~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..|+++.|.++-++-+.. .|+ ..||-.|..+|.+.|++
T Consensus 349 ~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 349 NRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCH
T ss_pred ccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccH
Confidence 455555555555555542 243 44555555555555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.33 E-value=6.4 Score=27.81 Aligned_cols=84 Identities=10% Similarity=0.002 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE---ALATFYRMKQFRCRP--DVYAYNVVINALCRVGNF 220 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~---a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~ 220 (258)
..+..+.+-|.+-...|. ++..|--.+-.++.+..+... ++.++++....+ .| .....-.|--|+.|.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 334555666666555443 255455556667777776554 888888877653 23 222333444577888888
Q ss_pred HHHHHHHHHhHhC
Q 047392 221 NKARFLLEQMELP 233 (258)
Q Consensus 221 ~~a~~~f~~M~~~ 233 (258)
++|.+.++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888873
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=15 Score=30.54 Aligned_cols=127 Identities=10% Similarity=-0.043 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-hHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN--NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-VNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~-~~~a 188 (258)
+++++++++.+... -+-+..+|+----.+.+.| .++++.++++.+.+... -|-+.|+---..+.+.|. ++++
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp---rNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCcCHHHH
Confidence 56888999888753 3356677776666666666 48899999999998852 277789988888889998 5999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRV--------------GNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------------g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
++.++++.+.. +-|...|+-.-..+.+. +.++++.+.+++.....- -|...|+.+
T Consensus 165 l~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P---~d~SaW~Y~ 233 (331)
T 3dss_A 165 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP---NDQSAWFYH 233 (331)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST---TCHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC---CCHHHHHHH
Confidence 99999998754 45777887776666655 458899999999987541 345556544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=85.00 E-value=3.2 Score=38.31 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+...|..|-..+.+.|+++.|.+.|.++..
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 445688888888888888888888887754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=7.3 Score=31.93 Aligned_cols=122 Identities=6% Similarity=-0.048 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHhCc-cC-CCCccccccCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHcc-----CChHHHHH
Q 047392 84 KKEADNIANNVLVLGP-AA-YRNPQKVTLGINKATEFYHWVERFFHFFHN---EVTCKEMGIVFARG-----NNVKGLWD 153 (258)
Q Consensus 84 ~~~~~~~~~~~l~~g~-~~-~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~---~~~y~~li~~~~~~-----g~~~~a~~ 153 (258)
.+.+..++|.....+. .. ...-.........|..++++..+ +.|+ ...|..|-..|.+. |+.++|.+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3345567777666543 22 12223344445666666666553 3466 66788888888884 89999999
Q ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 047392 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEE-GLVNEALATFYRMKQFRCR--PDVYAYNVV 210 (258)
Q Consensus 154 ~~~~m~~~g~~~~~~~~t~~~li~~~~~~-g~~~~a~~l~~~M~~~g~~--p~~~ty~~l 210 (258)
.|++-.+-+ |.-+..++...-..+++. |+.++|.+.+++.....-. |+....|.+
T Consensus 226 ~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 226 AFEHLTRYC--SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHhC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999988764 322344677778888885 8999999999998887655 665544443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=84.23 E-value=11 Score=30.82 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=77.7
Q ss_pred HHHHHHHHH-HHHcc--CC------hHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHh-----cCChHHHHHHHHHHH
Q 047392 132 EVTCKEMGI-VFARG--NN------VKGLWDFLKEMSRRGNGEL-VTTSTVTCLIKVLGE-----EGLVNEALATFYRMK 196 (258)
Q Consensus 132 ~~~y~~li~-~~~~~--g~------~~~a~~~~~~m~~~g~~~~-~~~~t~~~li~~~~~-----~g~~~~a~~l~~~M~ 196 (258)
...|..++. ++... |. ..+|...+++..+-. |. .+-..|+.|-..|.+ .|+.++|.+.|++-.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 456666655 34443 33 345666666665542 31 124468888888999 599999999999998
Q ss_pred hCCCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 197 QFRCRP--DVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 197 ~~g~~p--~~~ty~~li~~~~~~-g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+. .| +..++...-..+|+. |+.+++.+.+++-........|+....+.+
T Consensus 232 ~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 232 RY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred Hh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 84 36 377777888889985 999999999999998762211665555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.84 E-value=12 Score=28.13 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=54.1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
.+.|+++.|.++.+++ + +...|..|=+.....|+++-|.+.|..... |..+.--|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l---~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---N-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHH---C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHh---C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 4689999999998876 1 566899999999999999999999999875 4445555555666655
Q ss_pred HHHHHHHhHhC
Q 047392 223 ARFLLEQMELP 233 (258)
Q Consensus 223 a~~~f~~M~~~ 233 (258)
-..+-+.-...
T Consensus 79 L~kla~iA~~~ 89 (177)
T 3mkq_B 79 LSKMQNIAQTR 89 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 55444433333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=83.50 E-value=11 Score=27.63 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHccCCh------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH------HhcCChHHHHHHHHHHHhC
Q 047392 131 NEVTCKEMGIVFARGNNV------KGLWDFLKEMSRRGNGELVTTSTVTCLIKVL------GEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~------~~~g~~~~a~~l~~~M~~~ 198 (258)
|..+|=..+.-+-+.|+. ++..++|++-... ++|.. ...|..-|..+ -..+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444555566666666777 7777888877765 55532 11122211111 2227999999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 199 g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
+-.. ...|-..-+-=.+.|++..|.+++.+-...+- +| .....+.|..+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~--k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA--VP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BC-HHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC--Cc-HHHHHHHHHhh
Confidence 3333 66665555556689999999999999998763 24 44556555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.22 E-value=8.7 Score=26.09 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 047392 126 FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161 (258)
Q Consensus 126 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 161 (258)
+.+.|+.....+.+.+|-|.+++..|.++|+-.+.+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 258 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.44 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.09 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.98 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.91 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.86 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.61 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 96.84 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.6 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.22 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.15 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.01 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 95.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 95.63 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 95.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.06 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 94.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 94.19 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 94.02 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 93.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 93.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 93.5 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 93.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 93.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 92.36 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.49 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 90.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 89.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.78 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.51 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 80.21 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.2e-05 Score=65.42 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|++.|++..+. -+-+..+|..+...+.+.|+.++|.+.++...... +. +...+..+...+.+.|++++|++
T Consensus 252 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~ 326 (388)
T d1w3ba_ 252 LIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT--HADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp CHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cc--cchhhhHHHHHHHHCCCHHHHHH
Confidence 366777777776532 12345667777777888888888888887776653 22 55677788888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
.|++..+.. +-+..+|..+-..+.+.|++++|.+.|++..+.. |+ ...|..|-..|-+.||
T Consensus 327 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 327 LYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 888876532 2245667777778888888888888888877633 64 5567777777777664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.5e-05 Score=64.78 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|+..... ...+...+..+-..+.+.|++++|.+.|++..+.. | -+..+|..+-..|.+.|++++|.+.
T Consensus 219 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~~~~~A~~~ 293 (388)
T d1w3ba_ 219 FDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--P-HFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--S-SCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhHHH--hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45778888777643 23456667777788888888888888888887753 2 1455788888888999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
++..... .+.+...+..+...+.+.|++++|.+.|++..+.. |+ ..+|..+-..|.+.|++
T Consensus 294 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 294 YNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC----TTCHHHHHHHHHHHHTTTCC
T ss_pred HHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH
Confidence 8887654 24567788888888899999999999999987643 54 55677777888888875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=8.7e-05 Score=59.71 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=104.7
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCChHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~~~~ 187 (258)
....+.|..+|+.+... ........|...+..+.+.|+++.|.++|++..+.+. . +...|-..... +...|+.+.
T Consensus 112 ~~~~~~a~~i~~~~l~~-~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~--~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T--RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS-SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C--CTHHHHHHHHHHHHTSCCHHH
T ss_pred cccHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-C--cHHHHHHHHHHHHHhccCHHH
Confidence 35589999999998732 2222355789999999999999999999999887642 2 22233333332 345689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC--HHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--~~ty~~li~~~~~~g~~ 257 (258)
|..+|+.+.+. ++-+...|...+..+.+.|+.+.|+.+|++-..... ..|+ ...|...+.--.+.|++
T Consensus 188 a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~-~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-SCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHcCCH
Confidence 99999999875 345678899999999999999999999999876542 1243 45788888776677764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.00038 Score=55.57 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
..+|.+.|.+......-..+...+..+-..+.+.|++++|...|++..... | -+...|..+-.+|.+.|++++|.+.
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--P-NDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--c-ccccchhhhhhcccccccchhHHHH
Confidence 567888887766443334567788888899999999999999999988764 2 1566899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|++..+.. +-+...|..+-..|.+.|++++|.+.|++-..
T Consensus 229 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 229 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99987642 23567788899999999999999999998765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00012 Score=50.23 Aligned_cols=100 Identities=11% Similarity=-0.015 Sum_probs=83.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
-+.+.+.|++++|...|++..+.. + -+...|+.+-.+|.+.|++++|++.+.+..+.+ +.+...|..+-.++...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-P--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-C--cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 355778899999999999998874 2 266689999999999999999999999998754 468888999999999999
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 219 NFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 219 ~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
++++|...|++-.... |+-..+..
T Consensus 86 ~~~~A~~~~~~a~~~~----p~~~~~~~ 109 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE----ANNPQLKE 109 (117)
T ss_dssp CHHHHHHHHHHHHTTC----TTCHHHHH
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHH
Confidence 9999999999999744 76554433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.98 E-value=0.00019 Score=57.70 Aligned_cols=119 Identities=9% Similarity=0.065 Sum_probs=87.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGI-VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
.+.+.|.++|+........ +...|-.... -+...|+.+.|..+|+.+.+. .+- +...|...++.+.+.|++++|
T Consensus 148 ~~~~~ar~i~~~al~~~~~--~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~--~~~~w~~y~~~~~~~g~~~~a 222 (308)
T d2onda1 148 EGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGD--IPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTC--CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTT--CHHHHHHHHHHHHTTCCHHHH
T ss_pred CChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhh--hHHHHHHHHHHHHHcCChHHH
Confidence 4578899999888743222 2333333222 234468899999999998886 222 566799999999999999999
Q ss_pred HHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 189 LATFYRMKQF-RCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 189 ~~l~~~M~~~-g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
..+|++-... +..|+ ...|...+.---+.|+.+.+..++++|.+.
T Consensus 223 R~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999997664 34443 457888888878889999999999998773
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.00046 Score=55.07 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-------------------------
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG------------------------- 164 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------------------- 164 (258)
..+++|++.|.+..+.. +-+...|..+...+...|++++|.+.+++.......
T Consensus 67 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (323)
T d1fcha_ 67 EQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144 (323)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred CChHHHHHHHHhhhccc--cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHH
Confidence 44666666666554321 123445555566666666666666666665554200
Q ss_pred ----------------------C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047392 165 ----------------------E-LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (258)
Q Consensus 165 ----------------------~-~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~ 221 (258)
| ..+..++..+-..+...|++++|...|++..... +-+...|..+-..+.+.|+++
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 223 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 223 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccch
Confidence 0 0123344455555666666666666666655432 223455566666666666666
Q ss_pred HHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 222 KARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 222 ~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
+|.+.|++..+.. |+ ...|..+-..|.+.|+
T Consensus 224 ~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 224 EAVAAYRRALELQ----PGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHh----hccHHHHHHHHHHHHHCCC
Confidence 6666666665532 33 3345555555655554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.00053 Score=51.17 Aligned_cols=134 Identities=9% Similarity=-0.042 Sum_probs=102.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++.|++.|.++. .|+..+|.-+-.++.+.|++++|.+.|++-.+.. | -+...|+.+=.+|.+.|++++|.
T Consensus 19 ~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p-~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 19 KDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--K-HLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp TCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--h-hhhhhHHHHHHHHHhhccHHHHH
Confidence 34779999998654 3778888889999999999999999999998874 2 25668999999999999999999
Q ss_pred HHHHHHHhC------------CCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQF------------RCR--PD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~------------g~~--p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+-|++-... |.. ++ ..++..+=.++.+.|++++|.+.|++....... |+.......|..+.+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~--~~~~~~~~Al~~~~~ 167 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE--PRHSKIDKAMECVWK 167 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--GGGGHHHHHHHHHHT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHh
Confidence 999987542 111 11 245556667889999999999999998876532 545555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.0002 Score=51.64 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
-+.|.+.|++++|...|.+..+.. | -+...|..+-.+|...|++++|...|++..+.. +-+...|..+..++...|
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--h-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 345667888888888888877764 2 256677778888888888888888888877643 335567777888888888
Q ss_pred CHHHHHHHHHHhHhCC
Q 047392 219 NFNKARFLLEQMELPG 234 (258)
Q Consensus 219 ~~~~a~~~f~~M~~~~ 234 (258)
++++|...|++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888888887643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.86 E-value=0.00029 Score=52.27 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYN 208 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~ 208 (258)
|+...+...-+.+.+.|++++|...|++..+.. | -+...|+.+-.+|.+.|++++|+..|++..+. .| +..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHH
Confidence 555556666677788888888888888877653 1 25667888888888888888888888887653 34 466777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 209 VVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+-.+|.+.|++++|...|++...
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888888887653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00014 Score=50.44 Aligned_cols=107 Identities=9% Similarity=-0.007 Sum_probs=82.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL---VNEALATFYRMKQFRCRPDV-YAYNVVI 211 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~---~~~a~~l~~~M~~~g~~p~~-~ty~~li 211 (258)
..+++.+...+++++|.+.|++....+ ..+..++..+-.++.+.++ +++|+++|++.....-.|+. .+|..+=
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 568888999999999999999998875 2266678888888887554 55799999998875533432 3677777
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
.+|.+.|++++|.+.|++..+.. |+-.-...+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~----P~~~~A~~l~~ 113 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTE----PQNNQAKELER 113 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhC----cCCHHHHHHHH
Confidence 88899999999999999999843 87655444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.0027 Score=48.54 Aligned_cols=119 Identities=12% Similarity=-0.080 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+.|+.-+++........+. ..+|..+-..|.+.|++++|.+.|++..+-. | -+..+|+.+-.+|.+.|++++|+
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p-~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--P-DMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--C-CCHHHHhhhchHHHHHHHHHHhh
Confidence 34555555555533222221 2244445566777788888888888777653 1 14557777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+.|++..+.. +-+..+|..+-..+...|+.++|.+.|++..+..
T Consensus 92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 135 (259)
T d1xnfa_ 92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 135 (259)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 8888877632 2235566677777777888888888887776643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.0015 Score=52.46 Aligned_cols=116 Identities=4% Similarity=-0.070 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN-VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++|++++++.-+- -+-+...|+..-..+...|+ +++|.+.++...+... -+..+|+.+-..+.+.|++++|++.
T Consensus 60 ~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p---~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 60 ERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP---KNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH---hhhhHHHHHhHHHHhhccHHHHHHH
Confidence 3667777766532 12234455666556655553 6777777777666531 1455677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
++++.+.. +-+...|+.+-..+.+.|++++|.+.|++..+..
T Consensus 135 ~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 135 IADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred Hhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 77776532 2346667777777777777777777777776644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.55 E-value=0.00051 Score=46.48 Aligned_cols=90 Identities=11% Similarity=0.005 Sum_probs=75.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
+-..+.+.|++++|...|++..+.. | -+...|..+-.+|.+.|++++|+..|++..+.. +-+...|..+-..|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE--P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc--c-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 3445778999999999999988874 2 156789999999999999999999999987743 34578888899999999
Q ss_pred CCHHHHHHHHHHhH
Q 047392 218 GNFNKARFLLEQME 231 (258)
Q Consensus 218 g~~~~a~~~f~~M~ 231 (258)
|+.++|.+.|++..
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.0065 Score=43.94 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=66.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCC-CC-----------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNG-EL-----------VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-----------~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
..-+.+.+.|++++|.+.|.+..+.--. .. .-..+|+.+-.+|.+.|++++|+..+++..+.. +-++
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~ 96 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNE 96 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccch
Confidence 3445667777787777777766554110 00 012356677778888888888888888877643 2367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+|..+-.+|...|++++|...|++..+..
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 777777788888888888888888887743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0035 Score=46.04 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=72.1
Q ss_pred HHHHccCChHHHHHHHHHHHHc--CCC-CC---c-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRR--GNG-EL---V-------------TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~--g~~-~~---~-------------~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~ 200 (258)
......|++++|.+.|.+-.+- |.. +. . ....+..+...+.+.|++++|+..+++..+..
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~- 97 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH- 97 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-
Confidence 3455667777776666665543 100 00 0 12357778888999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHH
Q 047392 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYT 243 (258)
Q Consensus 201 ~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~t 243 (258)
+-+...|..++.+|.+.|+.++|.+.|+++.. .|+. |...|
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~--P~~~l 143 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID--PGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC--CCHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC--cCHHH
Confidence 45778899999999999999999999998743 5755 88766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.24 E-value=0.012 Score=41.63 Aligned_cols=101 Identities=15% Similarity=0.004 Sum_probs=78.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC--Cc-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGE--LV-----------TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~-----------~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
--+.+.+.|++++|...|.+..+.-... .. ...+|+.+-.+|.+.|++++|++.+++..+.. +-++
T Consensus 23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ 101 (153)
T d2fbna1 23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 101 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chhh
Confidence 3456678899999998888876541100 00 23467889999999999999999999988753 4578
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t 243 (258)
.+|..+-.++...|++++|...|++..... |+-..
T Consensus 102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l~----P~n~~ 136 (153)
T d2fbna1 102 KALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHH
T ss_pred hhhHHhHHHHHHcCCHHHHHHHHHHHHHhC----CCCHH
Confidence 999999999999999999999999998844 75443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0055 Score=49.05 Aligned_cols=130 Identities=8% Similarity=0.007 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.++...+. -+-+..+|+.+-..+.+.|+.++|.+.++++.+.. + -+...|+.+-..+.+.|++++|++.
T Consensus 94 ~~eal~~~~~al~~--~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p--~n~~a~~~~~~~~~~~~~~~~Al~~ 168 (315)
T d2h6fa1 94 LHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-A--KNYHAWQHRQWVIQEFKLWDNELQY 168 (315)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHH--HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-h--cchHHHHHHHHHHHHHHhhHHHHHH
Confidence 56889999887643 23457788888888999999999999999998864 1 2677899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGN------FNKARFLLEQMELPGFRCPP-DVYTYTILISSY 251 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~------~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~ 251 (258)
|++..+.. +-+...|+.+-..+.+.+. +++|.+.+.+..... | |...|..+-..+
T Consensus 169 ~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~----P~~~~~~~~l~~ll 230 (315)
T d2h6fa1 169 VDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV----PHNESAWNYLKGIL 230 (315)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHH
T ss_pred HHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC----CCchHHHHHHHHHH
Confidence 99998753 2356677766555555554 567888888877644 4 455555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0074 Score=42.88 Aligned_cols=110 Identities=11% Similarity=0.005 Sum_probs=81.7
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|.+..+. -+-+...|..+-.+|.+.|++++|.+.|+...+.. | -+...|..+..+|...|++++|.
T Consensus 24 ~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p-~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 24 KDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--K-KYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--c-cchHHHHHHHHHHHHcCCHHHHH
Confidence 3467999999998753 23567788889999999999999999999998874 2 26678999999999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHH--HHHcCCHHHHHHH
Q 047392 190 ATFYRMKQFRCRPD-VYAYNVVINA--LCRVGNFNKARFL 226 (258)
Q Consensus 190 ~l~~~M~~~g~~p~-~~ty~~li~~--~~~~g~~~~a~~~ 226 (258)
+.|++..... |+ ...+..+-.+ ....+.+++|...
T Consensus 99 ~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 99 RDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998753 44 4444333323 2233445555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.0019 Score=47.50 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK-----QFRCRPDVYA 206 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~-----~~g~~p~~~t 206 (258)
...+..+...+.+.|++++|...+++..+.. + .+...|..++.+|.+.|+.++|++.|+++. +.|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-P--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-C--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3467788999999999999999999998874 2 377899999999999999999999999974 4699999876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0085 Score=41.06 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=76.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VYAYN 208 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ty~ 208 (258)
+..+=+.+.+.|++++|.+.|.+..+.+ | -+...|..+-.+|.+.|++++|++.++++.+.. .... ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--P-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456677889999999999999998874 2 267789999999999999999999999987521 1111 24666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 209 VVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+=..+...+++++|.+.|++-....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 77778888999999999998877643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.011 Score=39.72 Aligned_cols=91 Identities=12% Similarity=-0.010 Sum_probs=75.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|++.... -+-+...|..+-.++.+.|++++|...+++..+.+. -+...|..+-.++...|++++|+
T Consensus 17 g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhcc---chhhHHHHHHHHHHHccCHHHHH
Confidence 3477999999998743 245677899999999999999999999999998752 26678999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty 207 (258)
..|++..+. .|+...+
T Consensus 92 ~~~~~a~~~--~p~~~~~ 107 (117)
T d1elwa_ 92 RTYEEGLKH--EANNPQL 107 (117)
T ss_dssp HHHHHHHTT--CTTCHHH
T ss_pred HHHHHHHHh--CCCCHHH
Confidence 999999874 4654433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.016 Score=43.97 Aligned_cols=119 Identities=10% Similarity=-0.062 Sum_probs=87.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|++.|++...- -+-+..+|+.+-.++.+.|++++|.+.|++..+.. |. +..+|..+-.+|...|++++|
T Consensus 50 ~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~lg~~~~~~g~~~~A 124 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRDKLA 124 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CTHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hh-hhhhHHHHHHHHHHHhhHHHH
Confidence 34467999999998743 12457789999999999999999999999998864 22 345788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.+.|++..+.. +.+......+.-++.+.+..+.+..+.......
T Consensus 125 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 125 QDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 99999987643 234444444445555666666666666655543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.71 E-value=0.0094 Score=43.53 Aligned_cols=85 Identities=11% Similarity=-0.148 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTI 246 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~ 246 (258)
++..+-..=+.|.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|...|++..... |+ ..+|..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~----p~~~~a~~~ 77 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHFF 77 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC----CCcHHHHHH
Confidence 44445555577899999999999999987643 4577889999999999999999999999998743 75 567888
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
+-.+|.+.|++
T Consensus 78 lg~~~~~l~~~ 88 (201)
T d2c2la1 78 LGQCQLEMESY 88 (201)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHCCCH
Confidence 88888888764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.61 E-value=0.016 Score=41.54 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=61.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc---CCCCC---------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRR---GNGEL---------VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~---------~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
...-..+.+.|++++|...|.+-... ..... .....|+-+-.+|.+.|++++|+..+++..... +.+
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~ 97 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 97 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cch
Confidence 34445566677777777777554332 11100 012245556667777888888888777776532 456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
...|..+-.++...|++++|...|++....
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777777888888888888887763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.60 E-value=0.0088 Score=39.94 Aligned_cols=80 Identities=15% Similarity=0.023 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|+..|++..... +-+...|..+-.++.+.|++++|...|++..+-. | -+...|..+-.+|...|++++|.+
T Consensus 31 ~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~la~~y~~~g~~~~A~~ 105 (112)
T d1hxia_ 31 NLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P-KDIAVHAALAVSHTNEHNANAALA 105 (112)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc--c-ccccchHHHHHHHHHCCCHHHHHH
Confidence 3669999999987542 2358889999999999999999999999988864 2 256789999999999999999999
Q ss_pred HHHHH
Q 047392 191 TFYRM 195 (258)
Q Consensus 191 l~~~M 195 (258)
.|++.
T Consensus 106 ~l~~~ 110 (112)
T d1hxia_ 106 SLRAW 110 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.011 Score=43.67 Aligned_cols=85 Identities=14% Similarity=0.020 Sum_probs=71.4
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
.+...|++++|.+.|+++ ..+ +..+|..+=.+|.+.|++++|++.|++-.+.. +-+...|..+=.++.+.|+.
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 456789999999999864 223 66788899999999999999999999998743 34677888888889999999
Q ss_pred HHHHHHHHHhHh
Q 047392 221 NKARFLLEQMEL 232 (258)
Q Consensus 221 ~~a~~~f~~M~~ 232 (258)
++|.+.|++-..
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.57 E-value=0.032 Score=39.82 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=74.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcC--------------CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRG--------------NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~ 201 (258)
...-..+.+.|++++|.+.|.+..+.. ..| .+...|+.+-.+|.+.|++++|+..+++..+.. +
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhCh-hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 334555677888888888887664320 001 134467778889999999999999999998753 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-+...|..+-.++.+.|++++|.+.|++..+..
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 577889999999999999999999999999854
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.016 Score=45.33 Aligned_cols=129 Identities=11% Similarity=-0.027 Sum_probs=88.5
Q ss_pred cccccCHHHHHHHHHHHHhh---CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHH
Q 047392 106 QKVTLGINKATEFYHWVERF---FHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKV 178 (258)
Q Consensus 106 ~~~~~~~~~a~~~f~~m~~~---~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~ 178 (258)
|.....+++|.+.|.+..+- .+-.+ -..+|+.+-.+|.+.|++++|.+.+++..+-. -.+.....++..+...
T Consensus 47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 126 (290)
T d1qqea_ 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (290)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHh
Confidence 33344456888888776432 11112 24578889999999999999999988654431 1111124456667667
Q ss_pred HHh-cCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 179 LGE-EGLVNEALATFYRMKQ----FRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 179 ~~~-~g~~~~a~~l~~~M~~----~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|-. .|++++|.+.+++..+ .+-.+ -..+|..+...+.+.|++++|.+.|++.....
T Consensus 127 ~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (290)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence 744 6999999999998753 22222 13557888899999999999999999987643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.11 Score=36.89 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~ 177 (258)
..++|++.|.+........+. ..+|+-+-.+|.+.|++++|...++...+.. | -++..|..+-.
T Consensus 28 ~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p-~~~~a~~~~g~ 104 (170)
T d1p5qa1 28 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--S-NNEKGLSRRGE 104 (170)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--c-cchhhhHHHHH
Confidence 356777777766533221111 3457778888999999999999999998874 2 26778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 047392 178 VLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~ 198 (258)
+|...|++++|...|++..+.
T Consensus 105 ~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 105 AHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.15 E-value=0.0088 Score=46.74 Aligned_cols=111 Identities=10% Similarity=-0.047 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
++++|++.|++..+. -+-|...+..+...|+..|++++|.+.++...+.. |. +...+..+-..+. +..
T Consensus 11 ~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~-~~~~~~~l~~ll~-------a~~ 78 (264)
T d1zbpa1 11 QLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PE-YLPGASQLRHLVK-------AAQ 78 (264)
T ss_dssp CHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GG-GHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHH-------hcc
Confidence 467999999998742 34667899999999999999999999999998763 31 2223333333332 222
Q ss_pred HHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 191 TFYRMKQ-------FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 191 l~~~M~~-------~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
-.+++.. .+-.++...+......+.+.|+.++|.+++++..+.
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2333322 121233344445556678899999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.17 Score=39.17 Aligned_cols=143 Identities=9% Similarity=-0.074 Sum_probs=87.2
Q ss_pred ccCHHHHHHHHHHHHh---hCC-CCCCHHHHHHHHHHH-HccCChHHHHHHHHHHHHc---CCCCCcCHHHHHHHHHHHH
Q 047392 109 TLGINKATEFYHWVER---FFH-FFHNEVTCKEMGIVF-ARGNNVKGLWDFLKEMSRR---GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~---~~~-~~p~~~~y~~li~~~-~~~g~~~~a~~~~~~m~~~---g~~~~~~~~t~~~li~~~~ 180 (258)
...+++|++.|++..+ ..+ ......++..+...| ...|++++|.+.+++..+- .-.+..-..+|..+...|.
T Consensus 90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 3345677777775432 111 111234555566666 4569999999999876432 1111112346888999999
Q ss_pred hcCChHHHHHHHHHHHhCCCC-----CCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCR-----PDV-YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSY 251 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~-----p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~ 251 (258)
+.|++++|.+.|++.....-. ... ..|..++..+...|+.+.|...|++....... -++ ......++.++
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~-~~~sre~~~l~~l~~a~ 248 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN-FADSRESNFLKSLIDAV 248 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ccchHHHHHHHHHHHHH
Confidence 999999999999998763211 111 12334445666789999999999999875411 022 23445566655
Q ss_pred H
Q 047392 252 C 252 (258)
Q Consensus 252 ~ 252 (258)
-
T Consensus 249 ~ 249 (290)
T d1qqea_ 249 N 249 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.95 E-value=0.12 Score=36.01 Aligned_cols=100 Identities=11% Similarity=-0.049 Sum_probs=72.2
Q ss_pred HHHHHH--HHHHHccCChHHHHHHHHHHHHcCCC-CCc--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 047392 133 VTCKEM--GIVFARGNNVKGLWDFLKEMSRRGNG-ELV--------TTSTVTCLIKVLGEEGLVNEALATFYRMKQF--- 198 (258)
Q Consensus 133 ~~y~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~-~~~--------~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--- 198 (258)
.+|..+ .....+.|++++|...|++-.+-.-. |.. ....|+.+-.+|.+.|++++|.+-+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 356666 34456789999999999998763211 100 2457889999999999999999999997641
Q ss_pred --CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 199 --RCRPD-----VYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 199 --g~~p~-----~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
...++ ...|+.+=.+|...|+.++|...|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 22456667889999999999999998653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.055 Score=36.58 Aligned_cols=91 Identities=14% Similarity=-0.034 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV---KGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~-~~t~~~li~~~~~~g~~~~ 187 (258)
+++|.+.|+..... -+.+..++..+-.++.+.++. ++|.+++++..+.. |.++ ..+|..|=.+|.+.|++++
T Consensus 15 l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--~~~~~~~~~~~Lg~~y~~~g~~~~ 90 (122)
T d1nzna_ 15 LLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEK 90 (122)
T ss_dssp HHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHHHhhhHH
Confidence 67999999988753 235667777788888876655 46999999987654 3223 2367778899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~ 208 (258)
|++.|++..+. .|+-.-..
T Consensus 91 A~~~~~~aL~~--~P~~~~A~ 109 (122)
T d1nzna_ 91 ALKYVRGLLQT--EPQNNQAK 109 (122)
T ss_dssp HHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHh--CcCCHHHH
Confidence 99999999884 47655433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=95.63 E-value=0.2 Score=34.87 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
.+|+-+-.+|.+.|++++|.+.+++..+.. .-++.+|..+-.+|...|++++|...|++..+.. |+-..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~ 136 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH
Confidence 467778888999999999999999988874 2377899999999999999999999999988743 65433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.26 Score=37.86 Aligned_cols=120 Identities=9% Similarity=-0.006 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHh
Q 047392 111 GINKATEFYHWVERFFHFFHN------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~ 181 (258)
++++|+++|++..... |+ ...++.+-..+...|++++|.+.|++..+... .......++..+...+..
T Consensus 27 ~~~~A~~~~~~aL~~~---~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (366)
T d1hz4a_ 27 NPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 103 (366)
T ss_dssp CHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC---cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3569999999876432 32 34677777888899999999999988765311 111123456777788899
Q ss_pred cCChHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 182 EGLVNEALATFYRMKQ----FRCRPD---VYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~----~g~~p~---~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.|++..|...+.+... .+.... ...+..+-..+...|+++.+...+.+....
T Consensus 104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 162 (366)
T d1hz4a_ 104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 162 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 9999999998887643 222211 234555667788899999999999888653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.06 E-value=0.34 Score=34.12 Aligned_cols=93 Identities=8% Similarity=-0.022 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.|+-+-.+|.+.|++++|...+++..+.. ..+...|..+-.+|...|++++|.+.|++..+. .|+.......+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45556677889999999999999998864 236778999999999999999999999999874 3554443333333
Q ss_pred H-HHcCCH-HHHHHHHHHhH
Q 047392 214 L-CRVGNF-NKARFLLEQME 231 (258)
Q Consensus 214 ~-~~~g~~-~~a~~~f~~M~ 231 (258)
+ .+.+.. +...++|..|.
T Consensus 141 ~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 141 CQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 3 333332 33455555553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.017 Score=39.38 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=48.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|.+.|++++|++.|++..+.+ +-+...|..+-.+|.+.|++++|.+.+++...
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 46888999999999999998753 34688899999999999999999999999876
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.81 E-value=0.65 Score=36.16 Aligned_cols=136 Identities=10% Similarity=-0.052 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHH-HHHH---HHHHHHc-------cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 113 NKATEFYHWVERFFHFFHNEV-TCKE---MGIVFAR-------GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~-~y~~---li~~~~~-------~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
++|++++++.... .|+.. .|+. ++..+.. .|.+++|..+++...+... - +...|..+-.++..
T Consensus 46 ~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k--~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 46 ESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-K--SYGTWHHRCWLLSR 119 (334)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-T--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-C--cHHHHHHhhHHHHH
Confidence 4889999987643 26643 3432 3333333 3447889999999887642 2 55567777777766
Q ss_pred cC--ChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 182 EG--LVNEALATFYRMKQFRCRPDVYAYNVVI-NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 182 ~g--~~~~a~~l~~~M~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
.+ ++++|...++++.+.. +++...|...+ ..+-..|..++|...+++.....- -|...|..+-..+.+.|+.+
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p---~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCC
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhcCHH
Confidence 65 4889999999987742 34566665555 455568999999999999998762 35667888877788877653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=94.19 E-value=0.028 Score=43.71 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
..+.|++++|.+.+++-.+.. .-|...+..+...|+..|++++|.+.|+...+. .|+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~ 64 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYL 64 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcH
Confidence 346799999999999998874 237778999999999999999999999999874 36543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.02 E-value=0.4 Score=33.62 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVV 210 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~l 210 (258)
...|..+-.++.+.|++++|...+++..+.. | -+...|..+-.+|.+.|++++|.+.|++..+. .| |...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l 151 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh--h-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456667788899999999999999998763 2 26778999999999999999999999999874 34 44444444
Q ss_pred HH
Q 047392 211 IN 212 (258)
Q Consensus 211 i~ 212 (258)
-.
T Consensus 152 ~~ 153 (169)
T d1ihga1 152 LK 153 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.90 E-value=0.12 Score=35.83 Aligned_cols=113 Identities=13% Similarity=0.014 Sum_probs=61.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG----------NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV 178 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~ 178 (258)
...+++|.+.|+..... -+-+...|..+-.+|... +.+++|.+.|++..+-. | -+..+|..+=.+
T Consensus 10 ~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P-~~~~a~~~lG~~ 84 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--P-KKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--T-TCHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--c-hhhHHHhhHHHH
Confidence 34467777777776642 133444555555555433 33456777777766653 2 144466666666
Q ss_pred HHhcCC-----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 179 LGEEGL-----------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 179 ~~~~g~-----------~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|...|+ +++|.+.|++..+ +.|+-..|..-+..+ ..|.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 655442 4556666655554 346655554444333 35556666655554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.21 Score=38.41 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=84.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-HHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPDV-YAY 207 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~-~ty 207 (258)
.+..+...+...|+.++|...+.+..+.... +......+..+-..|...|++++|.+.+++... .+..|+. .+|
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 4556667788899999999998876544221 223445677788899999999999999998753 3554543 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHh----CCCC--CCCCHHHHHHHHHHHHHcCCC
Q 047392 208 NVVINALCRVGNFNKARFLLEQMEL----PGFR--CPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~f~~M~~----~~~~--~~pd~~ty~~li~~~~~~g~~ 257 (258)
..+-..|.+.|+.++|.+.|++-.. .|.. +.-.......++..+.+.|++
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 350 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 350 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7777889999999999999988643 2321 001123445555666655544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.37 Score=30.38 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC---CCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRG---NGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~-~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+-..+.+.|++++|...|++-.+.. ..+.++ ..+++.|-.+|.+.|++++|++.+++..+
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 4444555555555555555543321 111111 23455555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.28 E-value=0.63 Score=31.87 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH----------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG----------EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 149 ~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~----------~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
++|.+.|+.-.+.. +- +...+..+=.+|. ..+.+++|++.|++..+.. +-+..+|+.+=..|...|
T Consensus 14 e~A~~~~e~al~~~-P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 14 EQIRQDAENTYKSN-PL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-Cc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcc
Confidence 67778888877763 22 4445555555554 4578899999999988643 346677777766666544
Q ss_pred -----------CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 219 -----------NFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 219 -----------~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
.+++|.+.|++... +.|+-.+|..-+..+-
T Consensus 90 ~~~~~~~~~~~~~~~A~~~~~kal~----l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 90 FLTPDETEAKHNFDLATQFFQQAVD----EQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHhHHHhhhhhhcccc----cCCCHHHHHHHHHHHH
Confidence 35788899998887 4488888877776554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=93.27 E-value=0.36 Score=33.43 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhCCCCCC----------HHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCCcC-----HHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN----------EVTCKEMGIVFARGNNVKGLWDFLKEMSRR---GNGELVT-----TSTVT 173 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~-----~~t~~ 173 (258)
+++|++.|++..+-..-.|+ ..+|+.+-.+|.+.|++++|.+-+++..+- .....++ ...|+
T Consensus 25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~ 104 (156)
T d2hr2a1 25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY 104 (156)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHh
Confidence 56788888776532111122 467888999999999999999998887642 1111111 22467
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
.+=.+|...|++++|.+.|++..+
T Consensus 105 ~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 105 SRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999998653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.7 Score=28.96 Aligned_cols=64 Identities=19% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQF-----RCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~-----g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
-+=..+.+.|++++|...|++-.+. ...++ ..+++.|=.++.+.|++++|...|++..+.. |+-
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~----P~~ 79 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD----PEH 79 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC----cCC
Confidence 3445678899999999999886531 12233 5678889999999999999999999998743 764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.49 E-value=2.6 Score=33.28 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.|..+|..+.+ |..++..+.+.++++.|.+++... + +..+|..+...+.......-|
T Consensus 32 ~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~---~-----~~~~~k~~~~~l~~~~e~~la----- 88 (336)
T d1b89a_ 32 AAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA---N-----STRTWKEVCFACVDGKEFRLA----- 88 (336)
T ss_dssp THHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH---T-----CHHHHHHHHHHHHHTTCHHHH-----
T ss_pred HHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc---C-----CHHHHHHHHHHHHhCcHHHHH-----
Confidence 55566655542 455666666666666665555432 1 333455555555554444332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
.+...+...+......++..|-..|..++...+++...... .++...++-++..|++.
T Consensus 89 ~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 89 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHHh
Confidence 11122223344444455555555555555555555443221 14444555555555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.82 E-value=1 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++.+-++.+-...+.|++....+.+.+|=|.+++..|.++|+-.+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.72 Score=38.54 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+-..+.+.|+.++|...+..-.... ...++..|=+.+...|++++|...|++-.+.. +-+...|+.|=
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg 193 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLA 193 (497)
T ss_dssp -----------------------CCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 4445556666677777777776665543321 12356667777888899999999998877642 23447888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
..+...|+..+|...|.+-..... |-..++..|...|.+..
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~~---~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVKF---PFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSSB---CCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhh
Confidence 888889999999999888887542 66777888887776543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.58 E-value=1.8 Score=33.44 Aligned_cols=109 Identities=7% Similarity=-0.106 Sum_probs=76.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCCcCHHHHHHHH-HHHHhcCCh
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN--VKGLWDFLKEMSRRGNGELVTTSTVTCLI-KVLGEEGLV 185 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~t~~~li-~~~~~~g~~ 185 (258)
....++|+.+|+...+. -+.+...|..+..++...++ .++|...+.+..+... . +...+..++ ..+-..|+.
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~--~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-R--NFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-T--CHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-h--hhhhhhhHHHHHHHhcccc
Confidence 33367889999987643 23456667777667766654 7889999999887632 2 444555444 566778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 223 (258)
++|+..+++..+.. +-+...|+.+-..+.+.|+.++|
T Consensus 161 ~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 161 AEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence 99999999887754 34677788877777787776554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.78 E-value=1.7 Score=29.38 Aligned_cols=64 Identities=20% Similarity=0.113 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
-++--++...+.|+-|+-.+++.+..+.+ +|++...-.+-.+|.+.|+..++-+++.+-.++|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 45566677777777777777777755533 56666666677777777777777777777777764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.77 E-value=2.3 Score=28.35 Aligned_cols=48 Identities=4% Similarity=0.002 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|+.+|++....+ +.+. .++-.|=-+|.+.|+.++|.+.++...+
T Consensus 53 d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3556677776665432 1122 3434444556677777777777777766
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.51 E-value=3 Score=26.53 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+.+-++.+-.....| +..+..+-+.+|-|..++.-|.++|+-.+
T Consensus 25 ~rrgmN~l~~~DlVP--eP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVP--EPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHTTSSBCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344443333333 44455566666666666666666665555
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.21 E-value=10 Score=29.66 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
||..--..+..-|-+.|.++.|..+|..+. | |.-++.+|.+.++++.|.+++.+. -+..+|..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~--------d---~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~ 74 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------N---FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 74 (336)
T ss_dssp C----------------CTTTHHHHHHHTT--------C---HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC--------C---HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHH
Confidence 555545566777889999999999998652 5 899999999999999999988766 26779999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+...|.+.....-| .+...+.. .+......++..|-..|.
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~--~~~d~l~~~v~~ye~~~~ 114 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIV--VHADELEELINYYQDRGY 114 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhh--cCHHHHHHHHHHHHHcCC
Confidence 99998887765443 22222322 444455566666665554
|