Citrus Sinensis ID: 047508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGSSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccEEEEEccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccEcccccccEEEEEEccccHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEcHHHHHHHccccHHHHHccccc
Coil and Loop (DISEMBL)
ypsgtvgrSFREEIRNKIEKwqepspakrpkplpvpdsepkkmkggrrlRKMKERYAVTDMRKLAnrtqfgvaeessfvnglgegygmlgqagSSKIRVFVAQMKLAAKVAKKFKekhygssdatsgrksrlaftpvqwlelsipqahaqqlgsgsqstyfsqkg
Flexible Loop (DISEMBL)
ypsgtvgrsfrEEIRNKiekwqepspakrpkplpvpdsepkkmkggrrlrkmkeryavtdmrklanrtqfgvaEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKkfkekhygssdatsgrksrLAFTPVQWLELSIPQAhaqqlgsgsqstyfsqkg
Low Complexity Region (SEG)
YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPkkmkggrrlrkmkerYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGSSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG
Disordered region (IsUnstruct)
***************************************************************LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKF*****************LAFTPVQWLELSI*********************
Disordered Region (DISOPRED)
*PSGTVGRSFREEIRNKIEKWQEPSP**************************KERYAVTDMRK*************SFVNGLGEGYG*********************************************AFTPVQWLELS***************TYFSQ**
Disordered Region (DISEMBL)
YPSGTVGRSFREEIRNKIEKWQ***********PVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKK*****************RLAFTPVQWLELSIPQA******************
Disordered Region (DISPRO)
*PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSE****KGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHY*******GRKSRLAFTPVQWLELSIPQAHAQQL*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGSSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q5U5C5	498	U4/U6 small nuclear ribon	N/A	no	0.969	0.321	0.415	1e-22
Q6NVP6	498	U4/U6 small nuclear ribon	yes	no	0.957	0.317	0.414	2e-21
Q8WWY3	499	U4/U6 small nuclear ribon	yes	no	0.957	0.316	0.408	2e-21
Q8CCF0	499	U4/U6 small nuclear ribon	yes	no	0.957	0.316	0.408	2e-21
Q7SXM7	508	U4/U6 small nuclear ribon	yes	no	0.969	0.314	0.397	4e-21
O42904	518	Pre-mRNA-processing facto	yes	no	0.909	0.289	0.461	2e-20
P49704	494	Pre-mRNA-processing facto	yes	no	0.551	0.184	0.322	2e-08

>sp|Q5U5C5|PRP31_XENLA U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 97/171 (56%), Gaps = 11/171 (6%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           P G +G   +EEI  K +KWQEP P K+ KPLP P    +K +GGRR RKMKER  +T++
Sbjct: 311 PEGKIGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEI 370

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH--- 118
           RK ANR  FG  EE ++   LG   G LG++GS +IR         A+++K  +      
Sbjct: 371 RKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQ 430

Query: 119 ---YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct: 431 SVVYGGKSTVRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 480

Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.
Xenopus laevis (taxid: 8355)

>sp|Q6NVP6|PRP31_XENTR U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 11/169 (6%)

Query: 4   GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRK 63
           G VG   +EEI  K +KWQEP P K+ KPLP P    +K +GGRR RKMKER  +T++RK
Sbjct: 313 GKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 372

Query: 64  LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH----- 118
            ANR  F   EE ++   LG   G LG++GS +IR         A+++K  +        
Sbjct: 373 QANRMSFAEIEEDAYQEDLGFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSV 432

Query: 119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
            YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct: 433 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 480

Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.

Xenopus tropicalis (taxid: 8364)

>sp|Q8WWY3|PRP31_HUMAN U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 11/169 (6%)

Query: 4   GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRK 63
           G VG   ++EI  K +KWQEP P K+ KPLP P    +K +GGRR RKMKER  +T++RK
Sbjct: 314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query: 64  LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH----- 118
            ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +        
Sbjct: 374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query: 119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
            YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct: 434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.

Homo sapiens (taxid: 9606)

>sp|Q8CCF0|PRP31_MOUSE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 11/169 (6%)

Query: 4   GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRK 63
           G VG   ++EI  K +KWQEP P K+ KPLP P    +K +GGRR RKMKER  +T++RK
Sbjct: 314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query: 64  LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH----- 118
            ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +        
Sbjct: 374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query: 119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
            YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct: 434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.

Mus musculus (taxid: 10090)

>sp|Q7SXM7|PRP31_DANRE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 11/171 (6%)

Query: 3   SGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMR 62
            G VG   +EEI  K +KWQEP P K+ KPLP P    +K +GGRR RKMKER  +T++R
Sbjct: 324 DGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIR 383

Query: 63  KLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEK----- 117
           K ANR  F   E+ ++   LG   G LG++GS ++R         A+++K  +       
Sbjct: 384 KHANRMTFAEIEDDAYQEDLGFSLGQLGKSGSGRVRQAQVNDSTKARISKSLQRTLQKQS 443

Query: 118 -HYGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQ 163
             YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS 
Sbjct: 444 MTYGGKSTVRDRSSGTSSSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSN 493

Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.

Danio rerio (taxid: 7955)

>sp|O42904|PRP31_SCHPO Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp31 PE=3 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 95/156 (60%), Gaps = 6/156 (3%)

Query: 1   YPSGTVGRSFREEIRNKIEKWQEPSPAKRPK-PLPVPDSEPKKMKGGRRLRKMKERYAVT 59
           YP G+ G S R+E+  KIEK  EP P+++P   LPVPD  PK+ +GGRR+RKMKE+YAVT
Sbjct: 335 YPDGSFGISARKEVERKIEKLLEP-PSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVT 393

Query: 60  DMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRV--FVAQMKLAAKVAKKFKEK 117
           ++R+L NR  FG  E   F     EG GMLGQ G  KIR     ++ KL    A+K + +
Sbjct: 394 ELRRLQNRVAFGKEEAEVFNFDETEGLGMLGQEGEGKIRAVSIDSRTKLRLPKARKAQLQ 453

Query: 118 HYGSSD--ATSGRKSRLAFTPVQWLELSIPQAHAQQ 151
                +  A SG +S L+FTP+Q +EL  P    QQ
Sbjct: 454 SMAQKNPLAASGLQSSLSFTPIQGIELVNPLLQRQQ 489

Required for spliceosome assembly where it is needed to link the U4/U6XU5 tri-snRNP to the prespliceosome complexes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P49704|PRP31_YEAST Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP31 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 3   SGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMR 62
           +  +   ++ E+  K  K  E       K LP+P+ +PKK + GR+ RK KE++ ++ +R
Sbjct: 326 NTVLAHKWKAELSKKARKLSEAPSISETKALPIPEDQPKKKRAGRKFRKYKEKFRLSHVR 385

Query: 63  KLANRTQFGVAEESSFVNGLGEGYGMLGQAGSS 95
           +L NR +FG  +E + ++  GE  G LG + +S
Sbjct: 386 QLQNRMEFG-KQEQTVLDSYGEEVG-LGMSNTS 416

Promotes the association of the U4/U6.U5 tri-snRNP particle with pre-spliceosomes to form the mature spliceosomal complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
356571467	486	PREDICTED: U4/U6 small nuclear ribonucle	0.993	0.337	0.792	9e-70
356558773	486	PREDICTED: U4/U6 small nuclear ribonucle	0.993	0.337	0.786	1e-69
224064342	486	predicted protein [Populus trichocarpa]	0.993	0.337	0.780	2e-69
225424693	489	PREDICTED: U4/U6 small nuclear ribonucle	0.993	0.335	0.786	8e-69
296086542	523	unnamed protein product [Vitis vinifera]	0.993	0.313	0.786	9e-69
124359772	484	Pre-mRNA processing ribonucleoprotein, b	0.993	0.338	0.780	2e-68
224128007	483	predicted protein [Populus trichocarpa]	0.993	0.339	0.781	2e-68
449435390	476	PREDICTED: U4/U6 small nuclear ribonucle	0.993	0.344	0.768	2e-66
449526411	484	PREDICTED: LOW QUALITY PROTEIN: U4/U6 sm	0.993	0.338	0.762	1e-65
115470533	484	Os07g0141600 [Oryza sativa Japonica Grou	0.993	0.338	0.768	2e-58

>gi|356571467|ref|XP_003553898.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max]

 Score =  267 bits (683), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 142/164 (86%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           PSG  GR+F++EI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 315 PSGKTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 374

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAGS K+RV V Q KLAAKVAKKFKEK+YGS
Sbjct: 375 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKKFKEKNYGS 434

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQAHA QLGSG+QSTYFS+ G
Sbjct: 435 SGATSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETG 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558773|ref|XP_003547677.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max]

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 142/164 (86%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           PSG  GR+F++EI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 315 PSGKTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 374

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAGS K+RV V Q KLAAKVAKKFKEK+YGS
Sbjct: 375 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKKFKEKNYGS 434

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +EL+ PQAHA QLGSG+QSTYFS+ G
Sbjct: 435 SGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSETG 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064342|ref|XP_002301428.1| predicted protein [Populus trichocarpa] gi|222843154|gb|EEE80701.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 141/164 (85%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           PSG  GR+ REEI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 315 PSGNTGRTLREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 374

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAG+ K+RV + Q KLAAKVAKKFKEK+YGS
Sbjct: 375 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSIGQSKLAAKVAKKFKEKNYGS 434

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +EL+ PQAHA QLGSG+QSTYFS+ G
Sbjct: 435 SGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSENG 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424693|ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis vinifera]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 140/164 (85%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           P+G  GR+ REEI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 318 PTGKTGRTLREEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 377

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAG+ K+RV V Q KLAAKVAKKFKEK YGS
Sbjct: 378 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSVGQSKLAAKVAKKFKEKQYGS 437

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQAHA QLGSG+QSTYFS+ G
Sbjct: 438 SGATSGLTSSLAFTPVQGIELSNPQAHANQLGSGTQSTYFSEIG 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086542|emb|CBI32131.3| unnamed protein product [Vitis vinifera]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 140/164 (85%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           P+G  GR+ REEI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 352 PTGKTGRTLREEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 411

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAG+ K+RV V Q KLAAKVAKKFKEK YGS
Sbjct: 412 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSVGQSKLAAKVAKKFKEKQYGS 471

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQAHA QLGSG+QSTYFS+ G
Sbjct: 472 SGATSGLTSSLAFTPVQGIELSNPQAHANQLGSGTQSTYFSEIG 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359772|gb|ABN06098.1| Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 139/164 (84%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           PSG  GRS ++EI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 313 PSGKTGRSLKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 372

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFG+ EESS  +GLGEGYGMLGQAGS K+RV   Q KLAAKVAKKFKEK YGS
Sbjct: 373 RKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSAGQSKLAAKVAKKFKEKSYGS 432

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQAHA QLGSG+QSTYFS+ G
Sbjct: 433 SGATSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETG 476

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128007|ref|XP_002320218.1| predicted protein [Populus trichocarpa] gi|222860991|gb|EEE98533.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 141/165 (85%), Gaps = 1/165 (0%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           PSG  GR+ REEIR KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA+TDM
Sbjct: 312 PSGNTGRALREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDM 371

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAG+ K+RV + Q KLAAKVAKKFKEK YGS
Sbjct: 372 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSIGQSKLAAKVAKKFKEKRYGS 431

Query: 122 SD-ATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S  ATSG  S LAFTPVQ +ELS PQ+HA QLGSG+QSTYFS+ G
Sbjct: 432 SSGATSGLTSSLAFTPVQGIELSNPQSHAHQLGSGTQSTYFSENG 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435390|ref|XP_004135478.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Cucumis sativus]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 137/164 (83%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           P+G  GR F++EI  KIEKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA T+M
Sbjct: 305 PTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYATTEM 364

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAGS K+RV  AQ KLAAKV KKFKEK YGS
Sbjct: 365 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKFKEKRYGS 424

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQAH  QLGSG+QSTYFS+ G
Sbjct: 425 SGATSGLTSSLAFTPVQGIELSNPQAHLNQLGSGTQSTYFSETG 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526411|ref|XP_004170207.1| PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp31-like [Cucumis sativus]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/164 (76%), Positives = 136/164 (82%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           P+G  GR F++EI  K EKWQEP PAK+PKPLPVPDSEPKK +GGRRLRKMKERYA T+M
Sbjct: 313 PTGKTGRVFKDEILKKXEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYATTEM 372

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
           RKLANR QFGV EESS  +GLGEGYGMLGQAGS K+RV  AQ KLAAKV KKFKEK YGS
Sbjct: 373 RKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKFKEKRYGS 432

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQAH  QLGSG+QSTYFS+ G
Sbjct: 433 SGATSGLTSSLAFTPVQGIELSNPQAHLNQLGSGTQSTYFSETG 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115470533|ref|NP_001058865.1| Os07g0141600 [Oryza sativa Japonica Group] gi|38175437|dbj|BAC21394.2| putative U4/U6 snRNP-associated 61 kDa protein [Oryza sativa Japonica Group] gi|113610401|dbj|BAF20779.1| Os07g0141600 [Oryza sativa Japonica Group] gi|125557200|gb|EAZ02736.1| hypothetical protein OsI_24854 [Oryza sativa Indica Group] gi|125599082|gb|EAZ38658.1| hypothetical protein OsJ_23051 [Oryza sativa Japonica Group]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 135/164 (82%)

Query: 2   PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
           P+G  GR+  EEIR KIEKWQEP PAK PKPLPVPDSEPKK +GGRRLRKMKERYA TDM
Sbjct: 313 PTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRLRKMKERYAQTDM 372

Query: 62  RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYGS 121
            KLANR QFGV EESS  +GLGEGYGMLGQAGS K+RV  AQ KLAAKVAKKFKEK YGS
Sbjct: 373 MKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVAKKFKEKSYGS 432

Query: 122 SDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
           S ATSG  S LAFTPVQ +ELS PQ+H   LGSG+QSTYFS+ G
Sbjct: 433 SGATSGLTSSLAFTPVQGIELSNPQSHGNLLGSGTQSTYFSETG 476

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2195698	485	emb1220 "AT1G60170" [Arabidops	0.987	0.336	0.602	1e-45
DICTYBASE|DDB_G0289595	460	prpf31 "pre-mRNA processing fa	0.915	0.328	0.413	8.6e-21
UNIPROTKB|Q5U5C5	498	prpf31 "U4/U6 small nuclear ri	0.969	0.321	0.356	1.5e-20
POMBASE|SPBC119.13c	518	prp31 "U4/U6 x U5 tri-snRNP co	0.909	0.289	0.403	1.6e-19
UNIPROTKB|E1BM48	499	PRPF31 "Uncharacterized protei	0.957	0.316	0.349	1.8e-19
UNIPROTKB|F1PKI0	499	PRPF31 "Uncharacterized protei	0.957	0.316	0.349	1.8e-19
UNIPROTKB|Q8WWY3	499	PRPF31 "U4/U6 small nuclear ri	0.957	0.316	0.349	1.8e-19
UNIPROTKB|F1RNI3	499	PRPF31 "Uncharacterized protei	0.957	0.316	0.349	1.8e-19
MGI|MGI:1916238	499	Prpf31 "PRP31 pre-mRNA process	0.957	0.316	0.349	1.8e-19
UNIPROTKB|Q6NVP6	498	prpf31 "U4/U6 small nuclear ri	0.957	0.317	0.355	3e-19

TAIR|locus:2195698 emb1220 "AT1G60170" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 100/166 (60%), Positives = 116/166 (69%)

Query:     2 PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDM 61
             P G  G++FREEIR KIEKWQEP PA++PKPLPVPDSEP               Y VTDM
Sbjct:   313 PLGISGKAFREEIRKKIEKWQEPPPARQPKPLPVPDSEPKKRRGGRRLRKMKERYQVTDM 372

Query:    62 RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRV--FVAQMKLAAKVAKKFKEKHY 119
             RKLANR  FG  EESS  +GLGEGYGMLGQAGS+++RV    +++K+ AKVAKK KE+ Y
Sbjct:   373 RKLANRMAFGTPEESSLGDGLGEGYGMLGQAGSNRLRVSSVPSKLKINAKVAKKLKERQY 432

Query:   120 GSSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQKG 165
                  TSG  S LAFTPVQ +EL  PQ  A  LGSG+QSTYFS+ G
Sbjct:   433 AGGATTSGLTSSLAFTPVQGIELCNPQ-QALGLGSGTQSTYFSESG 477

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

DICTYBASE|DDB_G0289595 prpf31 "pre-mRNA processing factor 31" [Dictyostelium discoideum (taxid:44689)]

 Score = 250 (93.1 bits), Expect = 8.6e-21, P = 8.6e-21
 Identities = 67/162 (41%), Positives = 88/162 (54%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G  GR +R+EI  KIEKWQEP P K+ K LP P+                  Y VTD +K
Sbjct:   295 GETGRQYRDEILAKIEKWQEPPPQKQDKALPAPEEGKRTKRGGKKARLYKQKYGVTDFQK 354

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKHYG--- 120
               NR  FGV E++   +G+G   GM+G   S K+R+ VAQ +   K  KK ++K+YG   
Sbjct:   355 AKNRMSFGVEEKTIGESGIG--LGMIG-GESGKVRL-VAQERGILK-KKKLEQKNYGGSM 409

Query:   121 SSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
             +S +TSG  S +A TPVQ L+LSI Q   +Q        YFS
Sbjct:   410 TSASTSGLAS-VAITPVQGLQLSITQNIREQ--DNKTEKYFS 448

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;ISS

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA

UNIPROTKB|Q5U5C5 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus laevis (taxid:8355)]

 Score = 249 (92.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 61/171 (35%), Positives = 86/171 (50%)

Query:     2 PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDM 61
             P G +G   +EEI  K +KWQEP P K+ KPLP P                     +T++
Sbjct:   311 PEGKIGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEI 370

Query:    62 RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH 118
             RK ANR  FG  EE ++   LG   G LG++GS +IR         A+++K  +   +K 
Sbjct:   371 RKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQ 430

Query:   119 ---YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
                YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   431 SVVYGGKSTVRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 480

GO:0071339 "MLL1 complex" evidence=ISS

POMBASE|SPBC119.13c prp31 "U4/U6 x U5 tri-snRNP complex subunit Prp31" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 240 (89.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 63/156 (40%), Positives = 83/156 (53%)

Query:     1 YPSGTVGRSFREEIRNKIEKWQEPSPAKRPK-PLPVPDSEPXXXXXXXXXXXXXXXYAVT 59
             YP G+ G S R+E+  KIEK  EP P+++P   LPVPD  P               YAVT
Sbjct:   335 YPDGSFGISARKEVERKIEKLLEP-PSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVT 393

Query:    60 DMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIR-VFV-AQMKLAAKVAKKFKEK 117
             ++R+L NR  FG  E   F     EG GMLGQ G  KIR V + ++ KL    A+K + +
Sbjct:   394 ELRRLQNRVAFGKEEAEVFNFDETEGLGMLGQEGEGKIRAVSIDSRTKLRLPKARKAQLQ 453

Query:   118 HYGSSD--ATSGRKSRLAFTPVQWLELSIPQAHAQQ 151
                  +  A SG +S L+FTP+Q +EL  P    QQ
Sbjct:   454 SMAQKNPLAASGLQSSLSFTPIQGIELVNPLLQRQQ 489

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0007126 "meiosis" evidence=NAS

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISO

UNIPROTKB|E1BM48 PRPF31 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 59/169 (34%), Positives = 85/169 (50%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G VG   ++EI  K +KWQEP P K+ KPLP P                     +T++RK
Sbjct:   314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH-- 118
              ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +   +K   
Sbjct:   374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query:   119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

GO:0071339 "MLL1 complex" evidence=IEA

GO:0070990 "snRNP binding" evidence=IEA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005687 "U4 snRNP" evidence=IEA

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA

UNIPROTKB|F1PKI0 PRPF31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 59/169 (34%), Positives = 85/169 (50%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G VG   ++EI  K +KWQEP P K+ KPLP P                     +T++RK
Sbjct:   314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH-- 118
              ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +   +K   
Sbjct:   374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query:   119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

GO:0071339 "MLL1 complex" evidence=IEA

GO:0070990 "snRNP binding" evidence=IEA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005687 "U4 snRNP" evidence=IEA

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA

UNIPROTKB|Q8WWY3 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 59/169 (34%), Positives = 85/169 (50%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G VG   ++EI  K +KWQEP P K+ KPLP P                     +T++RK
Sbjct:   314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH-- 118
              ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +   +K   
Sbjct:   374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query:   119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

GO:0003723 "RNA binding" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IMP;IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0043021 "ribonucleoprotein complex binding" evidence=IDA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0070990 "snRNP binding" evidence=IPI

GO:0005690 "U4atac snRNP" evidence=TAS

GO:0005687 "U4 snRNP" evidence=IDA

GO:0005684 "U2-type spliceosomal complex" evidence=IC

UNIPROTKB|F1RNI3 PRPF31 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 59/169 (34%), Positives = 85/169 (50%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G VG   ++EI  K +KWQEP P K+ KPLP P                     +T++RK
Sbjct:   314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH-- 118
              ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +   +K   
Sbjct:   374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query:   119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

GO:0071339 "MLL1 complex" evidence=IEA

GO:0070990 "snRNP binding" evidence=IEA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005687 "U4 snRNP" evidence=IEA

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA

MGI|MGI:1916238 Prpf31 "PRP31 pre-mRNA processing factor 31 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 239 (89.2 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 59/169 (34%), Positives = 85/169 (50%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G VG   ++EI  K +KWQEP P K+ KPLP P                     +T++RK
Sbjct:   314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH-- 118
              ANR  FG  EE ++   LG   G LG++GS ++R         A+++K  +   +K   
Sbjct:   374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433

Query:   119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=ISO;ISA

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005687 "U4 snRNP" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISA

GO:0016607 "nuclear speck" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=ISA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISA

GO:0070990 "snRNP binding" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

UNIPROTKB|Q6NVP6 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 237 (88.5 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 60/169 (35%), Positives = 84/169 (49%)

Query:     4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPXXXXXXXXXXXXXXXYAVTDMRK 63
             G VG   +EEI  K +KWQEP P K+ KPLP P                     +T++RK
Sbjct:   313 GKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 372

Query:    64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKH-- 118
              ANR  F   EE ++   LG   G LG++GS +IR         A+++K  +   +K   
Sbjct:   373 QANRMSFAEIEEDAYQEDLGFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSV 432

Query:   119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
              YG      D +SG  S +AFTP+Q LE+  PQA  +++   +Q  YFS
Sbjct:   433 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 480

GO:0071339 "MLL1 complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00021631	hypothetical protein (486 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XIII3357	hypothetical protein (820 aa)					•		•		0.511
	estExt_fgenesh4_pg.C_LG_IX0484	phenylalanyl-tRNA synthetase alpha chain (EC-6.1.1.20) (484 aa)			•	•			•		0.488
	gw1.82.79.1	annotation not avaliable (141 aa)			•						0.461
	eugene3.00041113	hypothetical protein (144 aa)			•						0.445
	estExt_fgenesh4_kg.C_LG_XVII0009	SubName- Full=Putative uncharacterized protein; (144 aa)			•						0.444
	eugene3.00140720	SubName- Full=Putative uncharacterized protein; (188 aa)			•						0.426
	eugene3.00130126	SubName- Full=Putative uncharacterized protein; (187 aa)			•						0.417
	eugene3.00021777	hypothetical protein (187 aa)			•						0.408
	eugene3.01330055	SubName- Full=Putative uncharacterized protein; (187 aa)			•						0.407
	fgenesh4_pm.C_LG_III000548	RecName- Full=Ribosomal protein S27; (86 aa)			•		•				0.402

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam09785	124	pfam09785, Prp31_C, Prp31 C terminal domain	8e-37
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	9e-07

>gnl|CDD|220400 pfam09785, Prp31_C, Prp31 C terminal domain

 Score =  122 bits (309), Expect = 8e-37
 Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 4/124 (3%)

Query: 26  PAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVN-GLGE 84
           PAK  K LP+PD +PKK +GGRR RKMKER+A+T++RK  NR +FG  EE    +   G 
Sbjct: 1   PAKGVKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGKEEEEVGYDFDEGV 60

Query: 85  GYGMLGQAGSSKIRVFVAQMKLAAKVAKKFK---EKHYGSSDATSGRKSRLAFTPVQWLE 141
           G GMLG  G  +IR+     K  AK++KK K   +    ++   SG  S LAFTP+Q +E
Sbjct: 61  GLGMLGSGGGGRIRLSQKDAKTKAKLSKKMKKRLQSSGATNGGVSGTASSLAFTPLQGIE 120

Query: 142 LSIP 145
           L  P
Sbjct: 121 LVNP 124

This is the C terminal domain of the pre-mRNA processing factor Prp31. Prp31 is required for U4/U6.U5 tri-snRNP formation. In humans this protein has been linked to autosomal dominant retinitis pigmentosa. Length = 124

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 7   GRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLAN 66
           G S REE+  +IEK +E  P    K  P  D   KK + GR  RK KE+ A ++ R L N
Sbjct: 339 GISLREELEKRIEKLKEKPPKPPTKAKPERD---KKERPGRYRRKKKEKKAKSERRGLQN 395

Length = 395

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG2574	492	consensus mRNA splicing factor PRP31 [RNA processi	100.0
PF09785	124	Prp31_C: Prp31 C terminal domain; InterPro: IPR019	100.0
PRK14552	414	C/D box methylation guide ribonucleoprotein comple	97.43
COG1498	395	SIK1 Protein implicated in ribosomal biogenesis, N	97.34

>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]

Probab=100.00  E-value=7.9e-65  Score=453.75  Aligned_cols=164  Identities=50%  Similarity=0.795  Sum_probs=151.6

Q ss_pred             CCCccccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHHhhcccccccccceecc
Q 047508            1 YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVN   80 (165)
Q Consensus         1 ~~~G~~G~~~reeI~~ki~K~~EPPp~k~~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~~NRm~FG~~Ee~~~~~   80 (165)
                      +++|.+|..|++||++||+|||||||++.+||||+|+|.|||||||||+|||||||+||||||+||||+||++|||+|++
T Consensus       315 ~~~g~~g~~~k~evekK~eKl~EpPpvk~~KaLP~P~d~pkKkRgGRR~RKmKEr~~lTe~RklaNRM~FG~~Ee~v~~~  394 (492)
T KOG2574|consen  315 SPNGELGHEFKAEVEKKIEKLQEPPPVKQTKALPIPLDGPKKKRGGRRFRKMKERYALTELRKLANRMAFGKIEEDVLQE  394 (492)
T ss_pred             CCccHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCCCccchhhccchHHHHHHHHhhhHHHHHHHhhhccCChhhhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCCcceehhHHHhhHHHHHHHHHhh----hhcCCCCCCccceeccccCCCcceeecCChhhhhhcCCCC
Q 047508           81 GLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKE----KHYGSSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGS  156 (165)
Q Consensus        81 ~~g~glGmlg~~gsGrir~~~~~~k~~~kl~K~~~~----~~~~~~~~~sG~aSSlafTP~QGiELvnP~a~~~~~~~~~  156 (165)
                      ++|+||||+|++|+||||.++++.++.++++|+|+.    +++.++-.++||+||++|||+||||||||++ +++...++
T Consensus       395 ~~g~glGmlgksg~Grir~~~vd~~tkarisk~~~~~lq~~q~agg~ttsG~~ss~aftP~qglEivnp~~-~~~~~~e~  473 (492)
T KOG2574|consen  395 DLGEGLGMLGKSGSGRIRGSSVDEKTKARISKKMKKQLQEQQQAGGFTTSGTASSVAFTPIQGLEIVNPQA-AEQQQPEE  473 (492)
T ss_pred             ccccccccccccCCCceeecccccchhhhhhHHHHHHHHHHHhhCCccccccccccccCcccchhhcCHHH-HhhcCccc
Confidence            999999999999999999999876666666666653    4455667789999999999999999999998 67777889


Q ss_pred             CCCCCCCCC
Q 047508          157 QSTYFSQKG  165 (165)
Q Consensus       157 ~~kyFs~~~  165 (165)
                      +++|||++|
T Consensus       474 ~~~yFS~~g  482 (492)
T KOG2574|consen  474 NSKYFSSSG  482 (492)
T ss_pred             ccceecCCC
Confidence            999999886

>PF09785 Prp31_C: Prp31 C terminal domain; InterPro: IPR019175 This is the C-terminal domain of the pre-mRNA processing factor Prp31

Probab=100.00  E-value=4.3e-56  Score=343.41  Aligned_cols=120  Identities=53%  Similarity=0.813  Sum_probs=112.8

Q ss_pred             CCCCCCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHHhhcccccccccceeccCcccccccccCCCCcceehhHHHhh
Q 047508           26 PAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMK  105 (165)
Q Consensus        26 p~k~~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~~NRm~FG~~Ee~~~~~~~g~glGmlg~~gsGrir~~~~~~k  105 (165)
                      |++.+||||+|||.|+|||||||||||||+|+||||||+||||.||++|||++++|+|+||||||++++||||+.+++.+
T Consensus         1 P~k~~KaLP~Pdd~pkKKRGGrR~RK~KEr~~~TelRK~~NRm~FG~~eee~~~~~~g~glGmlg~~~~grir~~~~~~k   80 (124)
T PF09785_consen    1 PAKQKKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGEEEEEVYDFGEGIGLGMLGQSGSGRIRATQVDQK   80 (124)
T ss_pred             CCCcCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccceeeeeeccCCCCceeeeecccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCC----CCCCccceeccccCCCcceeecCC
Q 047508          106 LAAKVAKKFKEKHYGS----SDATSGRKSRLAFTPVQWLELSIP  145 (165)
Q Consensus       106 ~~~kl~K~~~~~~~~~----~~~~sG~aSSlafTP~QGiELvnP  145 (165)
                      +.++++|+++.++..+    ++.++||+|||+|||+||||||||
T Consensus        81 ~~ak~sK~~~~~l~~~~~~~~~~~sG~~sSlaftp~qgiElvnP  124 (124)
T PF09785_consen   81 TKAKISKKMQKRLQSSGATTGGSTSGLASSLAFTPVQGIELVNP  124 (124)
T ss_pred             hhhhhhHHHHHHHHhhccccCCcccchhhhhhcCCCccccccCc
Confidence            9999999988776443    345689999999999999999999

Prp31 is required for U4/U6*U5 tri-snRNP formation []. In humans this protein has been linked to autosomal dominant retinitis pigmentosa [, ].

>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

Probab=97.43  E-value=0.00011  Score=66.91  Aligned_cols=37  Identities=27%  Similarity=0.549  Sum_probs=30.7

Q ss_pred             CccccHHHHHHHHHHHH----HhcCCCCCCCCCCCCCCCCC
Q 047508            3 SGTVGRSFREEIRNKIE----KWQEPSPAKRPKPLPVPDSE   39 (165)
Q Consensus         3 ~G~~G~~~reeI~~ki~----K~~EPPp~k~~K~LP~P~d~   39 (165)
                      ++.+|..||++|+++|+    ||+||||.+..++=|.+...
T Consensus       357 ~~~~G~~l~~~l~~ri~~i~~k~~~Pp~~k~~~~~~~~~~~  397 (414)
T PRK14552        357 GRYIGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKK  397 (414)
T ss_pred             CccchHHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccc
Confidence            34689999999999999    78999999999885554443

>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.00015  Score=65.86  Aligned_cols=57  Identities=42%  Similarity=0.560  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHHhh
Q 047508            7 GRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLAN   66 (165)
Q Consensus         7 G~~~reeI~~ki~K~~EPPp~k~~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~~N   66 (165)
                      |..|+++|+++|+++.++|+.+.+|++|.| +  +++|.||+.|++|+++..++.|..+|
T Consensus       339 ~~~lr~ele~Ri~~i~~~~~~pp~k~~~~~-~--~~~~~~r~~~~~~~~~~~~~~~~~~~  395 (395)
T COG1498         339 GISLREELEKRIEKLKEKPPKPPTKAKPER-D--KKERPGRYRRKKKEKKAKSERRGLQN  395 (395)
T ss_pred             hHHHHHHHHHHHHHHhccCCCCCCcccccc-c--cccCccccccccccccchhhhhhccC
Confidence            479999999999999999999999999999 5  89999999999999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
3gqu_A	169	NOP5P protein; RNA binding domain, RNA binding pro	8e-07
3pla_A	388	NOP5, PRE mRNA splicing protein; RNA-binding, SAM,	3e-04
3icx_A	255	PRE mRNA splicing protein; C/D guide RNA, 2'-O-met	3e-04

>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169

 Score = 45.7 bits (108), Expect = 8e-07
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 1   YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRK 51
           +    +    ++E+  +I++ +E          P P    K+ + GR+  K
Sbjct: 126 FSGEYIAEELKKELEARIKEIKE--------KYPRPPKRRKEERKGRKPWK 168

>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 4/33 (12%), Positives = 13/33 (39%)

Query: 1   YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPL 33
           +    +G    E+++ +I++ +E          
Sbjct: 354 FSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHH 386

>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 4/33 (12%), Positives = 13/33 (39%)

Query: 1   YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPL 33
           +    +G    E+++ +I++ +E          
Sbjct: 221 FSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHH 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d2ozbb1	249	a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle	5e-04

>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 1   YPSGTVGRSFREEIRNKIEKWQE 23
              G VG   ++EI  K +KWQE
Sbjct: 227 STEGKVGYELKDEIERKFDKWQE 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00