Citrus Sinensis ID: 047772

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MTGEALQISPANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNGDEEDEEDGKIG
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEEHHcHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
ccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHEEHHHHHHHHHHHHHHHcccccccccccEEHHHHEHHHHHHHHHHHcccHHHHHHHccccccccccccccccccHHHcHHHHHHcHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHccccccccccccccc
mtgealqispandprgspakeqQAAGVGILLQIMMLVLSFVLGHVlrrhkfyylpeaSASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSfldsfrhtqsgfslspkpffsnfgAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGalisatdpvTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYtfsnlsenSQRFVSAFFHLISSLAETFVFIYMGFDIAMekhswshlgFIFFSILFIIVARAANVFSCAYLVnlarpahrqiplkHQQALWYSGLRGAMAFALALQSvhdlpeghgqtiFSATTVIVVLTVLLIGGSTGTMLEALQVVgdahdghlgenfegnngyaapydegstsgnKLKMKLKEFRKSAASFTaldknyltpfftshngdeedeedgkig
mtgealqispandprgspAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASftaldknyltpfftshngdeedeedgkig
MTGEALQISPANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGfiffsilfiiVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSAttvivvltvlliggstgtMLEALQVVGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNGdeedeedGKIG
************************AGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENF*********************************FTALDKNYLTPFF****************
*************************GVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEAL****************************************EFRKSAASFTALDKNYLTPF*****************
***********************AAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHN************
**********************QAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVG**********FEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHN************
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTGEALQISPANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNGDEEDEEDGKIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
Q8RWU6535 Sodium/hydrogen exchanger yes no 0.967 0.900 0.793 0.0
Q8S396521 Sodium/hydrogen exchanger no no 0.971 0.928 0.709 0.0
Q5ZJ75574 Sodium/hydrogen exchanger yes no 0.933 0.810 0.328 4e-60
Q9Y2E8581 Sodium/hydrogen exchanger yes no 0.913 0.783 0.328 9e-60
Q8R4D1576 Sodium/hydrogen exchanger yes no 0.915 0.791 0.328 3e-58
Q4L208575 Sodium/hydrogen exchanger yes no 0.915 0.793 0.326 5e-58
Q8IVB4645 Sodium/hydrogen exchanger no no 0.903 0.697 0.311 4e-57
Q8BZ00644 Sodium/hydrogen exchanger no no 0.895 0.692 0.313 1e-54
Q96T83725 Sodium/hydrogen exchanger no no 0.744 0.511 0.353 6e-53
Q92581 669 Sodium/hydrogen exchanger no no 0.716 0.533 0.357 6e-52
>sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3 Back     alignment and function desciption
 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/513 (79%), Positives = 439/513 (85%), Gaps = 31/513 (6%)

Query: 6   LQISPA-NDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIG 64
           LQISPA +DP+G   K+QQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIG
Sbjct: 5   LQISPAIHDPQGQ-EKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIG 63

Query: 65  LIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVT 124
           LIVG LANISNTET+I  +     EF+   F FL      QSGFSL PKPFFSNFGAIVT
Sbjct: 64  LIVGGLANISNTETSIRTWFNFHDEFF---FLFLLPPIIFQSGFSLQPKPFFSNFGAIVT 120

Query: 125 FAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDM 184
           F++ GTF+ASMVTG+LVYLGGVMFLMYRLPFVECLMFG+LISATDPVTVLSIFQELG+D+
Sbjct: 121 FSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGSDV 180

Query: 185 NLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI-------- 236
           NLYALVFGESVLNDAMAISLYRTMSLVRSH SSGQNFFMVIVRFLETFVGS+        
Sbjct: 181 NLYALVFGESVLNDAMAISLYRTMSLVRSH-SSGQNFFMVIVRFLETFVGSMSAGVGVGF 239

Query: 237 ---------------LQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSN 281
                          LQNLECCLFVLFPYFSYMLAEGL LSGIVSILFTGIVMK YT+SN
Sbjct: 240 TSALLFKYAGLDVDNLQNLECCLFVLFPYFSYMLAEGLSLSGIVSILFTGIVMKHYTYSN 299

Query: 282 LSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANV 341
           LS NSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFI++ARAANV
Sbjct: 300 LSANSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIVIARAANV 359

Query: 342 FSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTV 401
           F C YLVNLARPAHR+IP+ HQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQTIF+ATT 
Sbjct: 360 FGCGYLVNLARPAHRKIPMTHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTA 419

Query: 402 IVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFE-GNNGYAAPY-DEGSTSGNKLKMK 459
           IVVLTVLLIGGSTGTMLEAL+VVGD+HD  LG+ FE  N+ Y   Y DE +  G+  + K
Sbjct: 420 IVVLTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTK 479

Query: 460 LKEFRKSAASFTALDKNYLTPFFTSHNGDEEDE 492
           L+EF KSAASFT LD+NYLTPFFTS+NGD +DE
Sbjct: 480 LREFHKSAASFTELDRNYLTPFFTSNNGDYDDE 512
Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8S396|NHX5_ARATH Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4 Back     alignment and function description
>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q8IVB4|SL9A9_HUMAN Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1 Back     alignment and function description
>sp|Q8BZ00|SL9A9_MOUSE Sodium/hydrogen exchanger 9 OS=Mus musculus GN=Slc9a9 PE=2 SV=1 Back     alignment and function description
>sp|Q96T83|SL9A7_HUMAN Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1 Back     alignment and function description
>sp|Q92581|SL9A6_HUMAN Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC9A6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
225436247529 PREDICTED: sodium/hydrogen exchanger 6-l 0.975 0.918 0.793 0.0
19919848525 Na+/H+ exchanger 6 [Arabidopsis thaliana 0.967 0.918 0.793 0.0
22330742535 sodium/hydrogen exchanger 6 [Arabidopsis 0.967 0.900 0.793 0.0
260595789533 Na+/H+ exchanger 6 [Populus euphratica] 0.975 0.911 0.789 0.0
297842753536 predicted protein [Arabidopsis lyrata su 0.967 0.899 0.785 0.0
60932228526 Na+/H+ antiporter [Populus tomentosa] 0.971 0.920 0.784 0.0
449492823580 PREDICTED: sodium/hydrogen exchanger 6-l 0.975 0.837 0.756 0.0
15982206531 Na+/H+ antiporter, isoform 2 [Solanum ly 0.973 0.913 0.746 0.0
357448255553 Sodium/hydrogen exchanger [Medicago trun 0.971 0.875 0.786 0.0
410094612524 Na+/K+-H+ antiporter NHX6, partial [Bras 0.959 0.912 0.769 0.0
>gi|225436247|ref|XP_002271865.1| PREDICTED: sodium/hydrogen exchanger 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/518 (79%), Positives = 448/518 (86%), Gaps = 32/518 (6%)

Query: 4   EALQISPANDPRGSPA--KEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASL 61
           + L ISP  +PRGSP+  KEQQAAGVGILLQIMMLVLSFVLGHVLRR KFYYLPEASASL
Sbjct: 2   DDLPISP-TEPRGSPSPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKFYYLPEASASL 60

Query: 62  LIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHT-QSGFSLSPKPFFSNFG 120
           LIGLIVG LANIS+TET+I A+    F F+ + F          QSGFSLSPKPFFSNFG
Sbjct: 61  LIGLIVGGLANISDTETSIRAW----FNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFG 116

Query: 121 AIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQEL 180
           AIVTFAI GTF+AS VTGILVYLGG+++LMYRLPF+EC+MFGALISATDPVTVLSIFQEL
Sbjct: 117 AIVTFAIVGTFIASTVTGILVYLGGLIYLMYRLPFLECMMFGALISATDPVTVLSIFQEL 176

Query: 181 GTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---- 236
           G+DMNLYALVFGESVLNDAMAISLYRT+SL++SH  S QNFFMVIV+FLETFVGS+    
Sbjct: 177 GSDMNLYALVFGESVLNDAMAISLYRTISLIKSHVPSEQNFFMVIVKFLETFVGSMSSGV 236

Query: 237 -------------------LQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRY 277
                              L NLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMK Y
Sbjct: 237 GVGFTAALLFKYAGLDIDNLLNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHY 296

Query: 278 TFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVAR 337
           TFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAME+HSWSH+GFIFFSILFIIVAR
Sbjct: 297 TFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSILFIIVAR 356

Query: 338 AANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFS 397
           AANVFSCAY+VNL RPAHRQIPLKHQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQTIF+
Sbjct: 357 AANVFSCAYMVNLIRPAHRQIPLKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFT 416

Query: 398 ATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGY-AAPYDEGSTSGNKL 456
           ATT IVVLTVLLIGGSTGTMLEALQVVGD HDG +GE+FE NNGY + PYDE  +SGN+L
Sbjct: 417 ATTAIVVLTVLLIGGSTGTMLEALQVVGDGHDGPIGESFEVNNGYISPPYDEEESSGNRL 476

Query: 457 KMKLKEFRKSAASFTALDKNYLTPFFTSHNGDEEDEED 494
           KM+LKEF K+ A+F ALDKNYLTPFFT+  GD+E++ED
Sbjct: 477 KMRLKEFHKNTATFRALDKNYLTPFFTTQTGDDEEQED 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|19919848|gb|AAM08407.1|AF490590_1 Na+/H+ exchanger 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22330742|ref|NP_178079.2| sodium/hydrogen exchanger 6 [Arabidopsis thaliana] gi|332278234|sp|Q8RWU6.3|NHX6_ARATH RecName: Full=Sodium/hydrogen exchanger 6; AltName: Full=Na(+)/H(+) exchanger 6; Short=NHE-6 gi|20268694|gb|AAM14051.1| unknown protein [Arabidopsis thaliana] gi|22136726|gb|AAM91682.1| unknown protein [Arabidopsis thaliana] gi|332198151|gb|AEE36272.1| sodium/hydrogen exchanger 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|260595789|gb|ACX46912.1| Na+/H+ exchanger 6 [Populus euphratica] Back     alignment and taxonomy information
>gi|297842753|ref|XP_002889258.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335099|gb|EFH65517.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|60932228|gb|AAX37333.1| Na+/H+ antiporter [Populus tomentosa] Back     alignment and taxonomy information
>gi|449492823|ref|XP_004159112.1| PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15982206|emb|CAC83608.1| Na+/H+ antiporter, isoform 2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|357448255|ref|XP_003594403.1| Sodium/hydrogen exchanger [Medicago truncatula] gi|355483451|gb|AES64654.1| Sodium/hydrogen exchanger [Medicago truncatula] Back     alignment and taxonomy information
>gi|410094612|gb|AFV60030.1| Na+/K+-H+ antiporter NHX6, partial [Brassica oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
TAIR|locus:2019853535 NHX6 "Na+/H+ antiporter 6" [Ar 0.504 0.469 0.731 2.8e-189
TAIR|locus:2020068521 NHX5 "sodium hydrogen exchange 0.504 0.481 0.673 7.5e-174
UNIPROTKB|Q5ZJ75574 Q5ZJ75 "Sodium/hydrogen exchan 0.427 0.371 0.346 2.1e-50
RGD|1308193575 Slc9a8 "solute carrier family 0.427 0.370 0.351 1.7e-49
UNIPROTKB|Q4L208575 Slc9a8 "Sodium/hydrogen exchan 0.427 0.370 0.351 1.7e-49
MGI|MGI:1924281576 Slc9a8 "solute carrier family 0.427 0.369 0.351 1.8e-49
UNIPROTKB|Q8IVB4645 SLC9A9 "Sodium/hydrogen exchan 0.467 0.361 0.312 3.8e-49
ZFIN|ZDB-GENE-041212-7640 slc9a8 "solute carrier family 0.447 0.348 0.330 1.7e-48
UNIPROTKB|Q9Y2E8581 SLC9A8 "Sodium/hydrogen exchan 0.427 0.366 0.351 2.4e-48
UNIPROTKB|E2R7C3581 SLC9A8 "Sodium/hydrogen exchan 0.427 0.366 0.351 1e-47
TAIR|locus:2019853 NHX6 "Na+/H+ antiporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 939 (335.6 bits), Expect = 2.8e-189, Sum P(2) = 2.8e-189
 Identities = 185/253 (73%), Positives = 201/253 (79%)

Query:   237 LQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHL 296
             LQNLECCLFVLFPYFSYMLAEGL LSGIVSILFTGIVMK YT+SNLS NSQRFVSAFFHL
Sbjct:   255 LQNLECCLFVLFPYFSYMLAEGLSLSGIVSILFTGIVMKHYTYSNLSANSQRFVSAFFHL 314

Query:   297 ISSLAETFVFIYMGFDIAMEKHSWSHLGXXXXXXXXXXVARAANVFSCAYLVNLARPAHR 356
             ISSLAETFVFIYMGFDIAMEKHSWSHLG          +ARAANVF C YLVNLARPAHR
Sbjct:   315 ISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIVIARAANVFGCGYLVNLARPAHR 374

Query:   357 QIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSAXXXXXXXXXXXXXXXXXX 416
             +IP+ HQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQTIF+A                  
Sbjct:   375 KIPMTHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGT 434

Query:   417 MLEALQVVGDAHDGHLGENFEG-NNGYAAPYDEGSTS-GNKLKMKLKEFRKSAASFTALD 474
             MLEAL+VVGD+HD  LG+ FE  N+ Y   YD+  T  G+  + KL+EF KSAASFT LD
Sbjct:   435 MLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLREFHKSAASFTELD 494

Query:   475 KNYLTPFFTSHNG 487
             +NYLTPFFTS+NG
Sbjct:   495 RNYLTPFFTSNNG 507
GO:0005737 "cytoplasm" evidence=ISM
GO:0006812 "cation transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=IEA;ISS;RCA
GO:0006885 "regulation of pH" evidence=IEA
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005768 "endosome" evidence=IDA
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2020068 NHX5 "sodium hydrogen exchanger 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IVB4 SLC9A9 "Sodium/hydrogen exchanger 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-7 slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2E8 SLC9A8 "Sodium/hydrogen exchanger 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7C3 SLC9A8 "Sodium/hydrogen exchanger" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWU6NHX6_ARATHNo assigned EC number0.79330.96780.9009yesno
Q5ZJ75SL9A8_CHICKNo assigned EC number0.32870.93370.8101yesno
Q8S396NHX5_ARATHNo assigned EC number0.70930.97180.9289nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
NHX6
sodium proton exchanger, putative (NHX6); sodium proton exchanger, putative (NHX6); FUNCTIONS IN- solute-hydrogen antiporter activity, sodium-hydrogen antiporter activity; INVOLVED IN- cation transport, sodium ion transport, regulation of pH; LOCATED IN- integral to membrane; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Na+/H+ exchanger, subfamily (InterPro-IPR004709), Cation/H+ exchanger, conserved region (InterPro-IPR018422), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro-IPR018409), Cation/H+ exchanger (InterPro-IPR0 [...] (535 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G04990
sad1/unc-84 protein-related; sad1/unc-84 protein-related; FUNCTIONS IN- molecular_function unkn [...] (471 aa)
   ••   0.836
AT1G76170
ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- tRNA processing; LOCATED IN- [...] (332 aa)
      • 0.790
UBQ4
UBQ4; protein binding; encodes a ubiquitin polyprotein. ; Protein modifier which can be covalen [...] (382 aa)
    •   0.746
ATCHX20
ATCHX20 (CATION/H+ EXCHANGER 20); monovalent cation-proton antiporter/ sodium-hydrogen antiport [...] (842 aa)
      • 0.677
AT2G44270
ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- tRNA processing; EXPRESSED IN [...] (355 aa)
      • 0.659
ATCNGC14
ATCNGC14; calmodulin binding / cyclic nucleotide binding / ion channel; member of Cyclic nucleo [...] (726 aa)
      • 0.659
AT5G63700
zinc finger (C3HC4 type RING finger) family protein; zinc finger (C3HC4 type RING finger) famil [...] (571 aa)
      • 0.565
KEA3
KEA3; potassium ion transmembrane transporter/ potassium-hydrogen antiporter; member of Putativ [...] (637 aa)
      • 0.562
ATRABG3A
Ras-related GTP-binding protein, putative; ATRABG3A; FUNCTIONS IN- protein binding, GTP binding [...] (217 aa)
      • 0.534
CNGC19
ATCNGC19; calmodulin binding / cyclic nucleotide binding / ion channel; member of Cyclic nucleo [...] (729 aa)
      • 0.534

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
TIGR00840559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 7e-66
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 8e-41
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 5e-31
TIGR00831525 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo 1e-20
COG3263 574 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip 3e-11
PRK05326562 PRK05326, PRK05326, potassium/proton antiporter; R 3e-04
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information 
 Score =  221 bits (566), Expect = 7e-66
 Identities = 128/400 (32%), Positives = 207/400 (51%), Gaps = 41/400 (10%)

Query: 54  LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPK 113
           +PE+   ++ GL+VG +   S      +      F  YL     LD+      G+ +  +
Sbjct: 35  VPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFF-LYLLPPIVLDA------GYFMPQR 87

Query: 114 PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLM--YRLPFVECLMFGALISATDPV 171
            FF N G+I+ FA+ GT + + V G+ +Y   ++       +  ++ L+FG+LISA DPV
Sbjct: 88  NFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147

Query: 172 TVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRT--------------MSLVRSHAS- 216
            VL++F+E   +  LY ++FGES+LNDA+ + LY T              + +    AS 
Sbjct: 148 AVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASF 207

Query: 217 ----SGQNFFMVIVRFLETFV---GSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILF 269
                G     V+  FL  F+      ++ +E     L  Y SY+ AE L LSGI++++F
Sbjct: 208 FVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFAETLHLSGILALIF 267

Query: 270 TGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFS 329
            GI MK+Y  +N+S  SQ  +  F  ++SSL+ET +FI++G  +  E H W+   F+  +
Sbjct: 268 CGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWA-FVVAT 326

Query: 330 ILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPE 389
           + F ++ R   V + +++ N  RP   +IP K Q  ++Y+GLRGA+AFALAL     L E
Sbjct: 327 LSFCVIYRVLGVRTLSWITNEFRPV--EIPYKDQLVIFYAGLRGAVAFALALL----LDE 380

Query: 390 GHGQ---TIFSATTVIVVLTVLLIGGSTGTMLEALQVVGD 426
                     + T V+V  TV+  GG+   ++E L+V   
Sbjct: 381 KIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKG 420

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form Back     alignment and domain information
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 100.0
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 100.0
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 100.0
PRK05326562 potassium/proton antiporter; Reviewed 100.0
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 100.0
COG3263 574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 100.0
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
PRK03659 601 glutathione-regulated potassium-efflux system prot 99.98
PRK03562 621 glutathione-regulated potassium-efflux system prot 99.97
COG0475397 KefB Kef-type K+ transport systems, membrane compo 99.97
PRK10669558 putative cation:proton antiport protein; Provision 99.96
PLN03159 832 cation/H(+) antiporter 15; Provisional 99.95
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.94
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 99.74
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 99.53
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.11
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 98.54
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 97.62
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 97.52
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 97.52
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 97.44
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 97.43
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 97.39
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 97.33
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 96.26
PRK03659601 glutathione-regulated potassium-efflux system prot 95.69
PRK03562621 glutathione-regulated potassium-efflux system prot 95.63
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 95.25
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 95.0
PRK10669558 putative cation:proton antiport protein; Provision 94.37
TIGR00698335 conserved hypothetical integral membrane protein. 94.28
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 94.19
PLN03159 832 cation/H(+) antiporter 15; Provisional 93.77
COG0385319 Predicted Na+-dependent transporter [General funct 93.73
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 93.45
PF03956191 DUF340: Membrane protein of unknown function (DUF3 93.26
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 93.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 92.86
TIGR00832328 acr3 arsenical-resistance protein. The first prote 92.8
TIGR03802 562 Asp_Ala_antiprt aspartate-alanine antiporter. All 92.61
COG2855334 Predicted membrane protein [Function unknown] 92.54
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 92.53
PF05982327 DUF897: Domain of unknown function (DUF897) ; Inte 92.5
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 92.29
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 92.28
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 91.62
COG2431297 Predicted membrane protein [Function unknown] 91.38
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 90.75
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 89.77
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 89.68
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 89.49
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 89.14
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 89.02
TIGR00841286 bass bile acid transporter. Functionally character 87.9
PRK04972558 putative transporter; Provisional 87.63
PRK05326562 potassium/proton antiporter; Reviewed 87.48
TIGR00698335 conserved hypothetical integral membrane protein. 86.92
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 85.19
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 84.98
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 84.39
PRK03818552 putative transporter; Validated 83.46
COG3493438 CitS Na+/citrate symporter [Energy production and 82.57
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 82.05
TIGR00659226 conserved hypothetical protein TIGR00659. Members 80.65
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 80.25
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2e-66  Score=528.93  Aligned_cols=413  Identities=46%  Similarity=0.753  Sum_probs=360.6

Q ss_pred             CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCccccc--ccccccChhhh
Q 047772           14 PRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNI--SAYLLLDFEFY   91 (498)
Q Consensus        14 ~~~~~~~~~~~~~~~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i--~~~~~~~~~~~   91 (498)
                      .+++++++|+++++++++++++|+++.+.+|++++.|++++||++..+++|+++|.+.+..+.+..-  .+...++||.|
T Consensus        22 ~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~f  101 (575)
T KOG1965|consen   22 SDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLF  101 (575)
T ss_pred             cccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHH
Confidence            3567788899999999999999999999999999999999999999999999999877765433221  14467899999


Q ss_pred             hhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchH
Q 047772           92 LQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPV  171 (498)
Q Consensus        92 ~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv  171 (498)
                      +   .+.||||+|++|+++++++++||..++..++++||++++.++|..+|+.+......++++.+|+++||++||||||
T Consensus       102 f---~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPV  178 (575)
T KOG1965|consen  102 F---LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPV  178 (575)
T ss_pred             H---HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCch
Confidence            9   9999999999999999999999999999999999999999999999976554457789999999999999999999


Q ss_pred             HHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---------------
Q 047772          172 TVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---------------  236 (498)
Q Consensus       172 ~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---------------  236 (498)
                      ++++|+++++++++++.+++|||++|||++||++..+..+...........+.+..|+..++|+.               
T Consensus       179 tvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK  258 (575)
T KOG1965|consen  179 TVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLK  258 (575)
T ss_pred             HHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887543333444466777777776665               


Q ss_pred             ------chhhhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047772          237 ------LQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMG  310 (498)
Q Consensus       237 ------~~~~~~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG  310 (498)
                            .+..|..+.+.++|.+|++||.+|+||++++++||++++||.++|+++++|...+++|+.+++++|+++|+|+|
T Consensus       259 ~~~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~G  338 (575)
T KOG1965|consen  259 FLYLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLG  338 (575)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  23578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCccchhheeccC-cchhHHHHHHhhhccC
Q 047772          311 FDIA-MEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPA--HRQIPLKHQQALWYSG-LRGAMAFALALQSVHD  386 (498)
Q Consensus       311 ~~l~-~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G-~rG~valala~~~~~~  386 (498)
                      +.+. ..+..|....++..+.+.++++|++.+++++++.|+.|+.  ..+++.++|.++||+| +||++++|||.....+
T Consensus       339 l~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~  418 (575)
T KOG1965|consen  339 LSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTD  418 (575)
T ss_pred             HHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccc
Confidence            8753 4444454345788888999999999999999999998741  2348999999999999 8999999999875443


Q ss_pred             CCccchhhHHhhhhhhehhhHhhhhhcHHHHHHHcccccCCCC
Q 047772          387 LPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHD  429 (498)
Q Consensus       387 ~~~~~~~~i~~~~~~vvl~T~~i~g~~~~~l~~~l~~~~~~~~  429 (498)
                      -|...+++++++|+.+|++|+++.|.++.|+++.|..+.+...
T Consensus       419 ~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~  461 (575)
T KOG1965|consen  419 SPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAA  461 (575)
T ss_pred             cccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccc
Confidence            3322468999999999999999999999999999998766544

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>COG2431 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 3e-05
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Length = 33 Back     alignment and structure
 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 13/24 (54%), Positives = 21/24 (87%)

Query: 157 ECLMFGALISATDPVTVLSIFQEL 180
           + L+FG++ISA DPV VL++F+E+
Sbjct: 5   DNLLFGSIISAVDPVAVLAVFEEI 28

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.54
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 98.41
2htg_A28 NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; 98.2
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 97.6
2kbv_A28 Sodium/hydrogen exchanger 1; transmembrane, peptid 97.11
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 96.72
1y4e_A27 Sodium/hydrogen exchanger 1; NHE1 isoform, transme 96.16
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.54  E-value=1.3e-14  Score=145.91  Aligned_cols=267  Identities=13%  Similarity=0.096  Sum_probs=181.9

Q ss_pred             cccchHHhhhhhhCCCchhh----HhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcc
Q 047772           96 SFLDSFRHTQSGFSLSPKPF----FSNFG--AIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATD  169 (498)
Q Consensus        96 ~~~L~~ilF~~G~~l~~~~l----~~~~~--~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTd  169 (498)
                      +-++.+.+|..|+|+|.+.+    ++.++  .....++.|+++++++     |      ..++.+..++.--+++.++||
T Consensus        65 dglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y------~~~~~~~~~~~~gw~ip~ATd  133 (388)
T 1zcd_A           65 DALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----Y------LAFNYADPITREGWAIPAATD  133 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----H------GGGCCSSTTHHHHTSSSSCCC
T ss_pred             hHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----H------HHHhcCChhhhhhhHHHHHHH
Confidence            78889999999999987765    44444  3577777788887654     3      345566666788899999999


Q ss_pred             hHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc-----chhhhH
Q 047772          170 PVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI-----LQNLEC  242 (498)
Q Consensus       170 pv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~-----~~~~~~  242 (498)
                      -+.++.++..++  +|..++..+.+-+++||..++++..++..   ++   .++............-..     .++...
T Consensus       134 IAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~---~~~~~l~~~~~~~~~~~~l~r~~v~~~~~  207 (388)
T 1zcd_A          134 IAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND---LSMASLGVAAVAIAVLAVLNLCGARRTGV  207 (388)
T ss_dssp             HHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC---CCHHHHHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC---ccHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            999999998776  78889999999999999999999888753   21   222221111111111111     222222


Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhcccc-c
Q 047772          243 CLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHL-ISSLAETFV-FIYMGFDIAMEKH-S  319 (498)
Q Consensus       243 ~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~-F~~iG~~l~~~~~-~  319 (498)
                      .+  .+...+++.++..|.+..+|.|++|+++....+++.++  .++.++..+. ..+++-++| |...|+.++.... .
T Consensus       208 y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~--~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~  283 (388)
T 1zcd_A          208 YI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSP--AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDG  283 (388)
T ss_dssp             HH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCH--HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCT
T ss_pred             HH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhh
Confidence            22  22346677789999999999999999998754322222  2334444444 446889999 9999999865321 1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchhhee-ccCcchhHHHHHHhhhc
Q 047772          320 WSHLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQALW-YSGLRGAMAFALALQSV  384 (498)
Q Consensus       320 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~G~rG~valala~~~~  384 (498)
                      ... ...+...+.++++|+++++..+++.-+.+  +.+++.+|++..-++ .+|.|+.+++..+....
T Consensus       284 l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf  350 (388)
T 1zcd_A          284 LTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAF  350 (388)
T ss_dssp             HHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHS
T ss_pred             ccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhc
Confidence            111 12223445568999999888888764443  345678888876555 46889999999886643
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Back     alignment and structure
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} Back     alignment and structure
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Back     alignment and structure
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
d2yvxa3173 Mg2+ transporter MgtE {Thermus thermophilus [TaxId 80.91
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MgtE membrane domain-like
superfamily: MgtE membrane domain-like
family: MgtE membrane domain-like
domain: Mg2+ transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=80.91  E-value=4.2  Score=33.53  Aligned_cols=141  Identities=15%  Similarity=0.163  Sum_probs=71.8

Q ss_pred             CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh----------------CCCchhhHh
Q 047772           54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF----------------SLSPKPFFS  117 (498)
Q Consensus        54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~----------------~l~~~~l~~  117 (498)
                      +|=.+..++.|.+.+.+......        .++.....   -.++|.++=.+|=                +.+.++.+|
T Consensus        11 lpWL~i~l~~~~~~a~ii~~Fe~--------~l~~~~~L---a~fiPli~~~gGN~G~Qs~ti~iR~La~g~i~~~~~~~   79 (173)
T d2yvxa3          11 VRWLVILILTGMVTSSILQGFES--------VLEAVTAL---AFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRR   79 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCT--------TTTTTTSC---CCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHhcCCchHHHHHHHHHHHHHhcccccchhHHH
Confidence            77778888888887765543321        12222223   3566666554442                566777666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHH-HHHhhCCChhhHHHHhhhccc
Q 047772          118 NFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLS-IFQELGTDMNLYALVFGESVL  196 (498)
Q Consensus       118 ~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~-il~~~~~~~~l~~ll~gEs~l  196 (498)
                      ..++=+..++..-.+..++.+...++.+.  ...+.-...++.+..++++. --+.+| ++|++|.++...+--+ .+.+
T Consensus        80 ~l~kE~~vgll~G~~l~~i~~~~~~~~~~--~~l~~vi~~sl~~~~~ia~~-~G~~lPlll~klg~DPA~aS~P~-itti  155 (173)
T d2yvxa3          80 VFLKEMGVGLLLGLTLSFLLVGKVYWDGH--PLLLPVVGVSLVLIVFFANL-VGAMLPFLLRRLGVDPALVSNPL-VATL  155 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSCCGGGSCSTT-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCChhhhhhhH-HHHH
Confidence            66555555544333333333333432110  01111122233332222222 222334 4489998887644222 3567


Q ss_pred             chhhHHHHHHHHH
Q 047772          197 NDAMAISLYRTMS  209 (498)
Q Consensus       197 nD~~aivl~~~~~  209 (498)
                      ||.+++..|..+.
T Consensus       156 ~Di~g~~iyf~iA  168 (173)
T d2yvxa3         156 SDVTGLLIYLSVA  168 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876554