Citrus Sinensis ID: 047850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MAMEDHQIFHHDPSAFSSSSSPSLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDHNNNNNNNNIIDQEEDEEPEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHYNKLSLGATTNTTIATTTASASAAGALDPILGHSLPFHGNRNSSFYFNHHEVG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcEcc
Coil and Loop (DISEMBL)
mamedhqifhhdpsafssssspslwpsfnnfplqtntqilpsssrhiiqpssstllfgdhnnnnnnnniidqeedeepeEELGAMKEMMYRIAAmqpvdidpttirkpkrrnirisddpqsVAARHRREKISEKIRILQrlvpggtkmdtASMLDEAIRYVKFLKRQIRLLQsnqcnivgddhynklslgattnttiatttasasaagaldpilghslpfhgnrnssfyfnhhevg
Flexible Loop (DISEMBL)
MAMEDHQIFHHDPSAFSSSSSPSLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDHNNNNNnnniidqeedeEPEEELGAMKEMMYRIAamqpvdidpttirkpkrrnirisddpqsvaarhrrekisekirilqrlvpggtkmdtaSMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHYNKLSLGATTNTTIATTTASASAAGALDPILGHSLPFHGNRNSSFYFNHHEVG
Low Complexity Region (SEG)
MAMEDHQIFHHDpsafssssspslwpsfnnfpLQTNTQILpsssrhiiqpsssTLLFGDHnnnnnnnniidqeedeepeeeLGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHYNKLSLgattnttiatttasasaagaLDPILGHSLPFHGNRNSSFYFNHHEVG
Disordered region (IsUnstruct)
**************************************************************************************************************************************IRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHYNKL*************************************************
Disordered Region (DISOPRED)
**********************************************************************************************************************************ISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIR*******************************************************************
Disordered Region (DISEMBL)
**********************SLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDHNNNNNNNNIIDQ********ELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISD**********REKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHYNKLSLGATTNTTIATTTASASAAGALDPILGHSLPFHGNRNSSFYFNHHEVG
Disordered Region (DISPRO)
*****H****HDPSAFSSSSSPSLWPSFNNFPLQTNTQILPS*S*********************************************YR**AMQPV**********************SV*ARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHYNKLSLGA*************************************Y*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMEDHQIFHHDPSAFSSSSSPSLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDHNNNNNNNNIIDQEEDEEPEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMxxxxxxxxxxxxxxxxxxxxxQCNIVGDDHYNKLSLGATTNTTIATTTASASAAGALDPILGHSLPFHGNRNSSFYFNHHEVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9LXD8	224	Transcription factor HEC3	yes	no	0.394	0.415	0.892	6e-37
O81313	198	Transcription factor IND	no	no	0.377	0.449	0.797	1e-36
Q8S3D2	373	Transcription factor bHLH	no	no	0.406	0.257	0.628	2e-30
Q9FHA7	241	Transcription factor HEC1	no	no	0.385	0.377	0.747	1e-29
Q9SND4	231	Transcription factor HEC2	no	no	0.385	0.393	0.736	3e-29
Q8LEG1	258	Transcription factor bHLH	no	no	0.372	0.341	0.465	1e-16
Q7XHI9	328	Transcription factor bHLH	no	no	0.309	0.222	0.534	2e-16
Q7XAQ6	215	Transcription factor LAX	no	no	0.254	0.279	0.633	2e-16
Q9M041	912	Transcription factor bHLH	no	no	0.262	0.067	0.661	4e-16
Q84WK0	352	Transcription factor bHLH	no	no	0.322	0.215	0.5	5e-16

>sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/93 (89%), Positives = 90/93 (96%)

Query: 82  LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
           LGAMKEMMY+IAAMQ VDIDP T++KPKRRN+RISDDPQSVAARHRRE+ISE+IRILQRL
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174
           VPGGTKMDTASMLDEAIRYVKFLKRQIRLL +N
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184

Required for the female reproductive tract development and fertility.
Arabidopsis thaliana (taxid: 3702)

>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 79/89 (88%)

Query: 84  AMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVP 143
           AMKEM Y IA MQPVDIDP T+ KP RRN+RISDDPQ+V AR RRE+ISEKIRIL+R+VP
Sbjct: 87  AMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146

Query: 144 GGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
           GG KMDTASMLDEAIRY KFLKRQ+R+LQ
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 77  EPEEE-LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKI 135
           EP+ E +  MKEM+YR AA +PV+     + KPKR+N++IS DPQ+VAAR RRE+ISEKI
Sbjct: 236 EPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKI 295

Query: 136 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
           R+LQ LVPGGTKMDTASMLDEA  Y+KFL+ Q++ L+
Sbjct: 296 RVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 82/91 (90%)

Query: 82  LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
           + AM+EM++RIA MQP+ IDP  ++ PKRRN+RIS DPQSVAARHRRE+ISE+IRILQRL
Sbjct: 95  MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 154

Query: 142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
           VPGGTKMDTASMLDEAI YVKFLK+Q++ L+
Sbjct: 155 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185

Required for the female reproductive tract development and fertility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SND4|HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 83/91 (91%)

Query: 82  LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
           + AM+EM++RIA MQP+ IDP +++ PKR+N+RIS DPQSVAARHRRE+ISE+IRILQRL
Sbjct: 92  MAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRL 151

Query: 142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
           VPGGTKMDTASMLDEAI YVKFLK+Q++ L+
Sbjct: 152 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182

Required for the female reproductive tract development and fertility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 60/88 (68%)

Query: 103 TTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVK 162
           T+++   R     + DPQS+ AR RREKI+E+++ LQ LVP GTK+D ++ML+EA+ YVK
Sbjct: 161 TSVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVK 220

Query: 163 FLKRQIRLLQSNQCNIVGDDHYNKLSLG 190
           FL+ QI+LL S+   +     YN L +G
Sbjct: 221 FLQLQIKLLSSDDLWMYAPLAYNGLDMG 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 56/73 (76%)

Query: 118 DPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177
           DPQS+ AR RRE+I+E++RILQ LVP GTK+D ++ML+EA++YVKFL+ QI+LL S+   
Sbjct: 246 DPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLW 305

Query: 178 IVGDDHYNKLSLG 190
           +     YN + +G
Sbjct: 306 MYAPIAYNGMDIG 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 114 RISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           ++S DPQSVAAR RR +IS++ R+L+ LVPGG+KMDT SML++AI YVKFLK Q+ L Q+
Sbjct: 39  KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQA 98

Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in regulating shoot branching by controlling axillary meristem initiation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 47/62 (75%)

Query: 107 KPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKR 166
           K  R    +S DPQSVAAR RR +IS++ +ILQ +VPGG KMDT SMLDEAI YVKFLK 
Sbjct: 35  KRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKA 94

Query: 167 QI 168
           QI
Sbjct: 95  QI 96

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 57/76 (75%)

Query: 118 DPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177
           DPQS+ AR RRE+I+E++RILQ LVP GTK+D ++ML+EA+ YVKFL+ QI+LL S+   
Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLW 334

Query: 178 IVGDDHYNKLSLGATT 193
           +     +N + +G ++
Sbjct: 335 MYAPIAFNGMDIGLSS 350

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
224083420	231	predicted protein [Populus trichocarpa]	0.868	0.887	0.572	3e-49
356528585	271	PREDICTED: uncharacterized protein LOC10	0.877	0.763	0.572	6e-49
356511167	266	PREDICTED: uncharacterized protein LOC10	0.847	0.751	0.573	1e-47
452030238	282	indehiscent-like protein [Phaseolus vulg	0.665	0.556	0.630	3e-47
449461837	223	PREDICTED: transcription factor HEC2-lik	0.559	0.591	0.707	6e-45
223702410	247	putative basic helix-loop-helix protein	0.792	0.757	0.536	7e-45
357519927	275	Transcription factor HEC3 [Medicago trun	0.389	0.334	0.934	4e-44
225431517	199	PREDICTED: transcription factor HEC3-lik	0.771	0.914	0.586	6e-44
224095942	101	predicted protein [Populus trichocarpa]	0.419	0.980	0.888	1e-43
356507477	243	PREDICTED: uncharacterized protein LOC10	0.694	0.674	0.579	2e-43

>gi|224083420|ref|XP_002307019.1| predicted protein [Populus trichocarpa] gi|222856468|gb|EEE94015.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/243 (57%), Positives = 156/243 (64%), Gaps = 38/243 (15%)

Query: 1   MAMEDHQIFHHDPSAFSSSSSPSLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDH 60
           M+MED QI HHD   F+S     +WPS    PLQT    +P+SS+  I    ST L GD 
Sbjct: 16  MSMED-QILHHDQLPFNS-----IWPSC---PLQTQQTQIPASSQTPI----STFL-GDQ 61

Query: 61  NNNNNNNNIIDQEEDEEPEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQ 120
             NN        EE++EPEEELGAMKEMMYRIAAMQPV+IDP TIRKPKRRN+RISDDPQ
Sbjct: 62  ICNNTE------EEEDEPEEELGAMKEMMYRIAAMQPVEIDPATIRKPKRRNVRISDDPQ 115

Query: 121 SVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ----- 175
           SVAAR RRE+ISEKIRILQRLVPGG KMDTASML+EAIRYVKFLKRQIRLLQ N      
Sbjct: 116 SVAARLRRERISEKIRILQRLVPGGRKMDTASMLEEAIRYVKFLKRQIRLLQPNHHQQHQ 175

Query: 176 -CNIVGDDH--YNKLSLGATTNTTIATTTASASAAGALDPILGHSLPFHGNRNSSFYFNH 232
            C   GD    Y+   L + T     T +     AG L  ILG      GN   +    +
Sbjct: 176 PCTTNGDWQIPYSNKPLDSIT----TTPSLLEPRAGGLGYILG------GNTGGNPLCFN 225

Query: 233 HEV 235
           HEV
Sbjct: 226 HEV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528585|ref|XP_003532880.1| PREDICTED: uncharacterized protein LOC100777351 [Glycine max]

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 150/227 (66%), Gaps = 20/227 (8%)

Query: 24  LWP--SFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDHNNNNNNNNIIDQEEDEEPEEE 81
           +WP  ++ N      T    +SS  I+ PSSS+   GD    ++N      EEDEEPEEE
Sbjct: 47  IWPINNYQNLLQMHQTPNTTTSSTVIVPPSSSSGFLGDILGVHHN-----LEEDEEPEEE 101

Query: 82  LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
           LGAMKEMMY+IAAMQPVDIDP TIRKPKRRN+RISDDPQSVAARHRRE+ISEKIRILQRL
Sbjct: 102 LGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRL 161

Query: 142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS--------NQCNIVGDD--HYNKLSLGA 191
           VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS         QC  V     H + L L  
Sbjct: 162 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQPSRQPPQCIGVASTTPHASTLLLAP 221

Query: 192 TTNTTIATTTASASAAGALDPILGHSLPFHGNRNS---SFYFNHHEV 235
           +++   A      S A +    +   L F G+ ++   S  FNHHEV
Sbjct: 222 SSDWPFAPNVLPRSTAVSASMDMSAGLGFDGHAHACDGSSSFNHHEV 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511167|ref|XP_003524301.1| PREDICTED: uncharacterized protein LOC100775296 [Glycine max]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/232 (57%), Positives = 149/232 (64%), Gaps = 32/232 (13%)

Query: 24  LWPSFNNFPLQTNTQILPSSSRHIIQPS-SSTLLFGDHNNNNNNNNIIDQEEDEEPEEEL 82
           +WPS N   L    Q   +++  II P  SS+   GD    +N       EEDEEPEEEL
Sbjct: 44  IWPSNNYHNLLQMHQTPNTTTLSIIAPPPSSSGFLGDILGVHN------LEEDEEPEEEL 97

Query: 83  GAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLV 142
           GAMKEMMY+IAAMQPVDIDP TIRKPKRRN+RISDDPQSVAARHRRE+ISEKIRILQRLV
Sbjct: 98  GAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLV 157

Query: 143 PGGTKMDTASMLDEAIRYVKFLKRQIRLLQS-------NQCNIVG--DDHYNKLSLGATT 193
           PGGTKMDTASMLDEAIRYVKFLKRQIRLLQS        QC  V     H + L L  + 
Sbjct: 158 PGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQSSNPPQCIGVATTSHHASTLLLAPSC 217

Query: 194 N----------TTIATTTASASAAGALDPILGHSLPFHGNRNSSFYFNHHEV 235
           +          +T AT +   SA    D  +GH+    G    S  FNHHEV
Sbjct: 218 DWPFAPNVLPSSTAATASMDMSAGLGFD--VGHAHACDG----SSSFNHHEV 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452030238|gb|AGF92088.1| indehiscent-like protein [Phaseolus vulgaris]

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 122/173 (70%), Gaps = 16/173 (9%)

Query: 79  EEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRIL 138
           EEELGAMKEMMY+IAAMQPVDIDP TIRKPKRRN+RISDDPQSVAARHRRE+ISEKIRIL
Sbjct: 107 EEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRIL 166

Query: 139 QRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS-------NQCNIVGDDHYNKLSLGA 191
           QRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS        QC      + N L L  
Sbjct: 167 QRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSISHPSQPPQCIGFATTNANTLLLAP 226

Query: 192 TT------NTTIATTTASASAAGALDPILGHSLPFHGNR---NSSFYFNHHEV 235
           +       N  +++T  +A+ A +    +   L F G     + S  FN HEV
Sbjct: 227 SCDWSFAPNVLLSSTAVTAATASSSSLDMPGGLGFDGRGHACDGSSSFNQHEV 279

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461837|ref|XP_004148648.1| PREDICTED: transcription factor HEC2-like [Cucumis sativus] gi|449524665|ref|XP_004169342.1| PREDICTED: transcription factor HEC2-like [Cucumis sativus]

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 120/154 (77%), Gaps = 22/154 (14%)

Query: 23  SLWPSFNNFPLQTN-TQILPSSSRHII----QPSSSTLLFGDHNNNNNNNNIIDQEEDEE 77
           S+WPSF  F L  +  Q LP+SS H +     PSS T   GD              ++EE
Sbjct: 35  SIWPSFLPFQLSDHHDQQLPTSSTHFVIGYSTPSSGT---GD--------------DEEE 77

Query: 78  PEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRI 137
           PEEELGAMKEMMY+IAAMQPVDIDP+TIRKPKRRN+RISDDPQS+AAR RRE+ISEKIRI
Sbjct: 78  PEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRI 137

Query: 138 LQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 171
           LQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL
Sbjct: 138 LQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223702410|gb|ACN21636.1| putative basic helix-loop-helix protein BHLH12 [Lotus japonicus]

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/220 (53%), Positives = 142/220 (64%), Gaps = 33/220 (15%)

Query: 40  LPSSSRHIIQPSSSTL--LFGDHNNNNNNNNIIDQEEDEEPEEELGAMKEMMYRIAAMQP 97
           +PSSS  I   SS +L  + G H+        I++ E+E+ EEELGAMKEMMY+IAAMQP
Sbjct: 30  MPSSSNTITPSSSGSLSDILGVHS--------IEEGEEEQEEEELGAMKEMMYKIAAMQP 81

Query: 98  VDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEA 157
           VDIDP TIR+PKRRN+RISDDP SVAARHRRE+ISEKIRILQRLVPGGTKMDTASMLDEA
Sbjct: 82  VDIDPATIRRPKRRNVRISDDPASVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEA 141

Query: 158 IRYVKFLKRQIRLLQSNQCNIVGDDHYNK-LSLGATTNTT-------------------- 196
           IRYVKFLKRQIRLLQS            + + +G+TT                       
Sbjct: 142 IRYVKFLKRQIRLLQSTTPQHHPPPQPPQCVGIGSTTGAPLLPPSTLLLAPSFDWPFAPN 201

Query: 197 -IATTTASASAAGALDPILGHSLPFHGNR-NSSFYFNHHE 234
            + ++TA+   A  +   LG     HG+  ++S  FNHHE
Sbjct: 202 LLLSSTATTVVATNMPARLGIEAVGHGHACDASSSFNHHE 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519927|ref|XP_003630252.1| Transcription factor HEC3 [Medicago truncatula] gi|355524274|gb|AET04728.1| Transcription factor HEC3 [Medicago truncatula]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 91/92 (98%)

Query: 82  LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
           LGAMKEMMY+IAAMQPVDIDP TIRKPKRRN+RIS+DPQSVAARHRRE+ISEKIRILQRL
Sbjct: 87  LGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISEDPQSVAARHRRERISEKIRILQRL 146

Query: 142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           VPGGTKMDTASMLDEAIRYVKFLKRQI+LLQS
Sbjct: 147 VPGGTKMDTASMLDEAIRYVKFLKRQIKLLQS 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431517|ref|XP_002275141.1| PREDICTED: transcription factor HEC3-like [Vitis vinifera]

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 140/203 (68%), Gaps = 21/203 (10%)

Query: 5   DHQIFHHDPSAFSSSSSPSLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDHNNNN 64
           + QI H     F      ++WP   NFPL T+     +++       S+++L GD   N 
Sbjct: 2   EEQILHDHHLPFD-----AVWP---NFPLPTHNI---TAAASSSSQISASVLLGDQMGNL 50

Query: 65  NNNNIIDQEEDEEPEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAA 124
              +       EEPEEELGAMKEMMY+IAAMQPVDIDP TIRKPKRRN+RISDDPQSVAA
Sbjct: 51  LEED-------EEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAA 103

Query: 125 RHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVGDDHY 184
           RHRRE+ISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIR LQSN  + +  D  
Sbjct: 104 RHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRQLQSNH-HPLPTDVT 162

Query: 185 NKLSL--GATTNTTIATTTASAS 205
             LS    A T+T +  +T+S+S
Sbjct: 163 ACLSTPDWAVTSTKLLGSTSSSS 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095942|ref|XP_002310509.1| predicted protein [Populus trichocarpa] gi|222853412|gb|EEE90959.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/99 (88%), Positives = 93/99 (93%)

Query: 76  EEPEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKI 135
           +EPEEELGAMKEMMYR+AAMQPVDIDP TI KPKR+N+RISDDPQSVAAR RRE+ISEKI
Sbjct: 1   DEPEEELGAMKEMMYRVAAMQPVDIDPATIHKPKRKNVRISDDPQSVAARLRRERISEKI 60

Query: 136 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174
           RILQRLVPGG KMDTASMLDEAIRYVKFLKRQIR LQ N
Sbjct: 61  RILQRLVPGGRKMDTASMLDEAIRYVKFLKRQIRSLQPN 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507477|ref|XP_003522492.1| PREDICTED: uncharacterized protein LOC100779374 [Glycine max]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 121/183 (66%), Gaps = 19/183 (10%)

Query: 1   MAMEDHQIFHHDPSAFSSSSSPSLWPSFNNFPLQTNTQILPSSSRHIIQPSSSTLLFGDH 60
           M  E+H I  HD           +WP +N +PL  N Q   SS+      +  T + G H
Sbjct: 24  MGTEEHNIILHDHHQIPKGVG--IWPHYN-YPLH-NIQPSSSSNVAPSSSNFLTDILGVH 79

Query: 61  NNNNNNNNIIDQEEDEEPEEELGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQ 120
                +            EEELGAMKEMMY++A MQPVDIDP ++RKPKRRN+RISDDPQ
Sbjct: 80  FEEEEDEE----------EEELGAMKEMMYKMAVMQPVDIDPASVRKPKRRNVRISDDPQ 129

Query: 121 SVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN-----Q 175
           SVAARHRRE+ISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIR LQS       
Sbjct: 130 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSTPPPPIN 189

Query: 176 CNI 178
           CN+
Sbjct: 190 CNV 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2144791	224	HEC3 "AT5G09750" [Arabidopsis	0.394	0.415	0.892	5.3e-40
TAIR|locus:2126856	198	IND "AT4G00120" [Arabidopsis t	0.385	0.459	0.780	2.8e-34
TAIR|locus:2155543	241	HEC1 "HECATE 1" [Arabidopsis t	0.415	0.406	0.707	1.5e-33
TAIR|locus:2074865	231	HEC2 "AT3G50330" [Arabidopsis	0.394	0.402	0.720	3.2e-33
UNIPROTKB|Q6Z9R3	246	P0461F06.33 "BHLH protein fami	0.377	0.361	0.775	1.8e-32
UNIPROTKB|Q67TR8	236	B1342C04.6 "Basic helix-loop-h	0.377	0.377	0.764	6e-32
TAIR|locus:2089418	373	AT3G21330 "AT3G21330" [Arabido	0.389	0.246	0.630	1.7e-27
UNIPROTKB|Q657D1	484	P0697C12.40 "BHLH transcriptio	0.389	0.190	0.634	3.6e-26
UNIPROTKB|Q8S0N2	393	P0692C11.41-1 "BHLH transcript	0.389	0.234	0.580	4.6e-25
UNIPROTKB|Q5TKP7	416	OJ1362_G11.11 "Putative unchar	0.389	0.221	0.528	3.5e-23

TAIR|locus:2144791 HEC3 "AT5G09750" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 83/93 (89%), Positives = 90/93 (96%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
             LGAMKEMMY+IAAMQ VDIDP T++KPKRRN+RISDDPQSVAARHRRE+ISE+IRILQRL
Sbjct:    92 LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query:   142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174
             VPGGTKMDTASMLDEAIRYVKFLKRQIRLL +N
Sbjct:   152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

TAIR|locus:2126856 IND "AT4G00120" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 71/91 (78%), Positives = 80/91 (87%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
             + AMKEM Y IA MQPVDIDP T+ KP RRN+RISDDPQ+V AR RRE+ISEKIRIL+R+
Sbjct:    85 MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query:   142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
             VPGG KMDTASMLDEAIRY KFLKRQ+R+LQ
Sbjct:   145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2155543 HEC1 "HECATE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 70/99 (70%), Positives = 85/99 (85%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
             + AM+EM++RIA MQP+ IDP  ++ PKRRN+RIS DPQSVAARHRRE+ISE+IRILQRL
Sbjct:    95 MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 154

Query:   142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCNIVG 180
             VPGGTKMDTASMLDEAI YVKFLK+Q++ L+  Q  + G
Sbjct:   155 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE-QAVVTG 192

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2074865 HEC2 "AT3G50330" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 67/93 (72%), Positives = 84/93 (90%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
             + AM+EM++RIA MQP+ IDP +++ PKR+N+RIS DPQSVAARHRRE+ISE+IRILQRL
Sbjct:    92 MAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRL 151

Query:   142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174
             VPGGTKMDTASMLDEAI YVKFLK+Q++ L+ +
Sbjct:   152 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEH 184

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

GO:0080126 "ovary septum development" evidence=IGI

UNIPROTKB|Q6Z9R3 P0461F06.33 "BHLH protein family-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 69/89 (77%), Positives = 81/89 (91%)

Query:    84 AMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVP 143
             AM+EM++ IAA+QPV+IDP T+R PKRRN+RIS DPQSVAAR RRE+ISE+IRILQRLVP
Sbjct:   126 AMREMIFHIAALQPVNIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRILQRLVP 185

Query:   144 GGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
             GGTKMDTASMLDEAI YVKFLK Q++ L+
Sbjct:   186 GGTKMDTASMLDEAIHYVKFLKTQVQSLE 214

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q67TR8 B1342C04.6 "Basic helix-loop-helix (BHLH)-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/89 (76%), Positives = 80/89 (89%)

Query:    84 AMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVP 143
             AM+EM++ IAA+QPV+IDP  +R PKRRN+RIS DPQSVAAR RRE+ISE+IRILQRLVP
Sbjct:   116 AMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAARLRRERISERIRILQRLVP 175

Query:   144 GGTKMDTASMLDEAIRYVKFLKRQIRLLQ 172
             GGTKMDTASMLDEAI YVKFLK Q++ L+
Sbjct:   176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2089418 AT3G21330 "AT3G21330" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 58/92 (63%), Positives = 75/92 (81%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTIRKPKRRNIRISDDPQSVAARHRREKISEKIRILQRL 141
             +  MKEM+YR AA +PV+     + KPKR+N++IS DPQ+VAAR RRE+ISEKIR+LQ L
Sbjct:   242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query:   142 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
             VPGGTKMDTASMLDEA  Y+KFL+ Q++ L++
Sbjct:   302 VPGGTKMDTASMLDEAANYLKFLRAQVKALEN 333

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q657D1 P0697C12.40 "BHLH transcription-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 299 (110.3 bits), Expect = 3.6e-26, P = 3.6e-26
 Identities = 59/93 (63%), Positives = 75/93 (80%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTI-RKPKRRNIRISDDPQSVAARHRREKISEKIRILQR 140
             L  +KEM+YR AAM+PV +       +P+RRN+RIS DPQ+VAAR RRE+ISE++R+LQ+
Sbjct:   336 LAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQK 395

Query:   141 LVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
             LVPGG KMDTASMLDEA  Y++FLK QIR LQ+
Sbjct:   396 LVPGGAKMDTASMLDEAANYLRFLKSQIRELQT 428

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q8S0N2 P0692C11.41-1 "BHLH transcription factor-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 54/93 (58%), Positives = 75/93 (80%)

Query:    82 LGAMKEMMYRIAAMQPVDIDPTTIR-KPKRRNIRISDDPQSVAARHRREKISEKIRILQR 140
             +  +KEM+YR AAM+PV +       KP+R+N+RIS DPQ+VAAR RRE++S+++R+LQ+
Sbjct:   247 MAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQK 306

Query:   141 LVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
             LVPGG KMDTASMLDEA  Y+KFLK Q++ L++
Sbjct:   307 LVPGGNKMDTASMLDEAASYLKFLKSQVQKLET 339

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5TKP7 OJ1362_G11.11 "Putative uncharacterized protein OJ1362_G11.11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 269 (99.8 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 55/104 (52%), Positives = 79/104 (75%)

Query:    82 LGAMKEMMYRIAAMQPVDI-------DPTTI-----RKPKRRNIRISDDPQSVAARHRRE 129
             +  +KEM+YR A M+PV +       DP++      ++P+R+N+RIS DPQ+VAAR RRE
Sbjct:   258 IAQVKEMVYRAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRISSDPQTVAARLRRE 317

Query:   130 KISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
             ++SE++R+LQRLVPGG+KMDTA+MLDEA  Y+KFLK Q+  L++
Sbjct:   318 RVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALET 361

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LXD8	HEC3_ARATH	No assigned EC number	0.8924	0.3940	0.4151	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0026000601 hypothetical protein (231 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
smart00353	53	smart00353, HLH, helix loop helix domain	4e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-09
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	5e-06

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 56.1 bits (136), Expect = 4e-11
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 121 SVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIR 169
           +   R RR KI+E    L+ L+P      K+  A +L  AI Y+K L+ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 121 SVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIR 169
           ++  R RRE+I++    L+ L+P      K+  A +L +A+ Y+K L+  ++
Sbjct: 9   NLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 125 RHRREKISEKIRILQRLVP--GGTKMDTASMLDEAIRYVKFLK 165
           R RR++I++    L+ L+P     K+  A +L  AI Y+K L+
Sbjct: 10  RRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.47
smart00353	53	HLH helix loop helix domain.	99.44
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.44
KOG1318	411	consensus Helix loop helix transcription factor EB	99.34
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.98
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.77
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.55
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.38
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.37
KOG0561	373	consensus bHLH transcription factor [Transcription	97.97
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.91
PLN03217	93	transcription factor ATBS1; Provisional	97.58
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.57
KOG3910	632	consensus Helix loop helix transcription factor [T	97.42
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	96.61
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	94.23
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	92.61
KOG3898	254	consensus Transcription factor NeuroD and related	91.93
KOG4395	285	consensus Transcription factor Atonal, contains HT	88.62
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	88.28

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.47  E-value=6.2e-14  Score=97.95  Aligned_cols=52  Identities=29%  Similarity=0.562  Sum_probs=49.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhHHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG---TKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~---~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      ..|+..||+||++||+.|..|+.+||.+   .|+||++||+.||+||+.|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            5699999999999999999999999987   899999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.44  E-value=2.3e-13  Score=93.40  Aligned_cols=49  Identities=35%  Similarity=0.582  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850          121 SVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       121 s~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      +..||+||++||++|..|+.+||.   +.|+||++||++||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999994   6799999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.44  E-value=1.6e-13  Score=95.47  Aligned_cols=48  Identities=33%  Similarity=0.578  Sum_probs=45.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFLK  165 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-----~K~dkasIL~~AI~YIk~Lq  165 (236)
                      ..|+..||+||++||+.|..|+.+||.+     .|++|++||+.||+||++||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            4699999999999999999999999976     78999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.34  E-value=1.5e-12  Score=123.69  Aligned_cols=54  Identities=26%  Similarity=0.521  Sum_probs=49.8

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHHHHHH
Q 047850          117 DDPQSVAARHRREKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKRQIRL  170 (236)
Q Consensus       117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~~v~~  170 (236)
                      ++.|+.+|||||++||++|++|..|||.|    .|..|.+||..++|||+.||+..++
T Consensus       234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~  291 (411)
T KOG1318|consen  234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR  291 (411)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999998    4567999999999999999988774

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.98  E-value=5.5e-10  Score=96.55  Aligned_cols=60  Identities=28%  Similarity=0.503  Sum_probs=54.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG-------GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~-------~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      .+|..+||+||+.||..+..|+.|||.       |.|+.||.||.++||||.+|+.++.+.+.+...
T Consensus        64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~  130 (229)
T KOG1319|consen   64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST  130 (229)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999995       457889999999999999999998887766654

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.77  E-value=4.3e-09  Score=94.77  Aligned_cols=54  Identities=20%  Similarity=0.419  Sum_probs=47.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC--------CCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047850          119 PQSVAARHRREKISEKIRILQRLVPG--------GTKMDTASMLDEAIRYVKFLKRQIRLLQ  172 (236)
Q Consensus       119 ~hs~~ER~RR~kin~~~~~Lr~LVP~--------~~K~dkasIL~~AI~YIk~Lq~~v~~L~  172 (236)
                      .+-++|||||+|||+.|..|++||+.        -.|++||.||+.||+|+|.|+.....--
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~   96 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA   96 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence            35699999999999999999999993        2788999999999999999998765543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.55  E-value=7.8e-08  Score=98.12  Aligned_cols=50  Identities=26%  Similarity=0.462  Sum_probs=47.3

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKRQ  167 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~~  167 (236)
                      ++|+.+|||||+++|..|.+|.+|||.|    .|+||.+||.+||++||.++..
T Consensus        22 e~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   22 ENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            7899999999999999999999999986    5999999999999999998875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.38  E-value=9.3e-07  Score=78.99  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=49.2

Q ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHhccCCCC--CC-CChhHHHHHHHHHHHHHHHHHHHHh
Q 047850          114 RISDDPQSVAARHRREKISEKIRILQRLVPGG--TK-MDTASMLDEAIRYVKFLKRQIRLLQ  172 (236)
Q Consensus       114 r~~~~~hs~~ER~RR~kin~~~~~Lr~LVP~~--~K-~dkasIL~~AI~YIk~Lq~~v~~L~  172 (236)
                      ..++..|+..||+||..|+++|..|+.+||.+  .+ -+.++||+.|++||+.|+.+....+
T Consensus        57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~  118 (232)
T KOG2483|consen   57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ  118 (232)
T ss_pred             CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence            34567799999999999999999999999963  33 3379999999999999987765543

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.37  E-value=1.3e-07  Score=97.06  Aligned_cols=63  Identities=25%  Similarity=0.430  Sum_probs=57.7

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhccCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          115 ISDDPQSVAARHRREKISEKIRILQRLVPG-GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       115 ~~~~~hs~~ER~RR~kin~~~~~Lr~LVP~-~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      .++.+||++|||.|..|||+|.+|+++||+ ..|+.|..+|..||+||++|+...+.++.++..
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~  338 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS  338 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence            357899999999999999999999999998 589999999999999999999999988766654

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.97  E-value=6e-06  Score=76.22  Aligned_cols=53  Identities=25%  Similarity=0.423  Sum_probs=47.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHHHH
Q 047850          119 PQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLL  171 (236)
Q Consensus       119 ~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~~L  171 (236)
                      --+..||||=.-||..|..||.|+|.  +.|++||.||+.+.+||.+|+.+.-+|
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence            35577999999999999999999996  899999999999999999998765554

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.91  E-value=2.7e-05  Score=70.32  Aligned_cols=58  Identities=21%  Similarity=0.402  Sum_probs=50.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850          118 DPQSVAARHRREKISEKIRILQR-LVPG-GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ  175 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~-LVP~-~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~  175 (236)
                      .+-.+-||||=.|+|+.|.+|++ -+++ -.++-|+.||..||+||..||.-++++....
T Consensus       120 KAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~  179 (284)
T KOG3960|consen  120 KAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE  179 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            34668899999999999999987 4554 5789999999999999999999999986554

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.58  E-value=0.00015  Score=55.75  Aligned_cols=50  Identities=26%  Similarity=0.483  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhccCCC------CCCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          128 REKISEKIRILQRLVPG------GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       128 R~kin~~~~~Lr~LVP~------~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      -+.|++.+..|+.|+|.      ..|...+-||++|..||+.|+.+|..|.+....
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~   74 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE   74 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999994      467788899999999999999999999877654

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.57  E-value=7e-05  Score=66.13  Aligned_cols=58  Identities=17%  Similarity=0.375  Sum_probs=51.4

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ  175 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~  175 (236)
                      ..++..||.|=..+|..|..||.+||.    ..|+.|..+|..||.||++|+.-++.-+...
T Consensus       111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            456777999999999999999999994    5789999999999999999999888877554

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=97.42  E-value=0.00052  Score=67.20  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---C-CCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---G-TKMDTASMLDEAIRYVKFLKRQIRLLQ  172 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~-~K~dkasIL~~AI~YIk~Lq~~v~~L~  172 (236)
                      .+.++-||-|=..||+.|++|.++.--   . ..-.|.-||..||.-|-.|++||++-.
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            567888999999999999999998753   2 224599999999999999999999754

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=96.61  E-value=0.0036  Score=53.03  Aligned_cols=50  Identities=26%  Similarity=0.542  Sum_probs=45.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850          120 QSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       120 hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      |++-||+|-..+|+.|.+||.++|.  ..|++|.--|.-|..||-+|=+-.+
T Consensus        82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~  133 (173)
T KOG4447|consen   82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ  133 (173)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence            8899999999999999999999996  7999999999999999999865443

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=94.23  E-value=0.035  Score=55.35  Aligned_cols=39  Identities=23%  Similarity=0.502  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHH
Q 047850          125 RHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKF  163 (236)
Q Consensus       125 R~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~  163 (236)
                      ||-|+|+|..+..|.+|+|-    ..|+||.+||.-+|-|++.
T Consensus        34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV   76 (712)
T ss_pred             hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence            56699999999999999994    6999999999999999863

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=92.61  E-value=0.08  Score=54.07  Aligned_cols=43  Identities=35%  Similarity=0.540  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHH
Q 047850          121 SVAARHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKF  163 (236)
Q Consensus       121 s~~ER~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~  163 (236)
                      .-+.|.||.|-|+.|.+|..++|-    ...+|||+|+.-||-|+|-
T Consensus        51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            356799999999999999999993    4779999999999999974

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=91.93  E-value=0.47  Score=43.07  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=43.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHH
Q 047850          119 PQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQI  168 (236)
Q Consensus       119 ~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v  168 (236)
                      .-+.-||+|=-.+|+-|..||.++|.   ..|+.|...|.-|-.||..|+.-.
T Consensus        75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~  127 (254)
T KOG3898|consen   75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL  127 (254)
T ss_pred             cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence            35567888889999999999999993   689999999999999999998543

>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]

Probab=88.62  E-value=0.68  Score=42.42  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRL  170 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~  170 (236)
                      .+-+..||+|=..+|..|..||.+||.   ..|+.|-.-|+.|-.||-.|-..+..
T Consensus       176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~  231 (285)
T KOG4395|consen  176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL  231 (285)
T ss_pred             cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence            345678999999999999999999996   47899999999999999998877644

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=88.28  E-value=0.58  Score=45.66  Aligned_cols=43  Identities=35%  Similarity=0.468  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHHH
Q 047850          122 VAARHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKFL  164 (236)
Q Consensus       122 ~~ER~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~L  164 (236)
                      -+.|.||++-|-.|.+|..|+|-    ...+||++|+.-|..|||.-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence            45699999999999999999994    35699999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-10
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	8e-07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	9e-07
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-06
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 106 RKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPG-GTKMDTASMLDEAIRYVKFL 164
            + ++R         +   +  R  I++KI  L+ LV G   K++ +++L +AI Y++FL
Sbjct: 2   SRGEKR------TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFL 55

Query: 165 KRQIRLLQ 172
           +   + L+
Sbjct: 56  QHSNQKLK 63

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 44.7 bits (106), Expect = 8e-07
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+    Q 
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 125 RHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           R RR ++      L+  +P      K     +L +A  Y+  ++ + + L S
Sbjct: 15  RQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 125 RHRREKISEKIRILQRLVPG------GTKMDTASMLDEAIRYVKFLKRQ 167
           R RR+KI+  I  L +++P        +      +L +A  Y++ L++ 
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+    Q 
Sbjct: 21  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 42/186 (22%)

Query: 38  QILPSSS-RHII-QPSSST---LLFGDHNNNNNNNNIIDQEEDEEPEEELGAMKEMMYR- 91
            IL      HII    + +    LF            +  +++E  ++ +  +  + Y+ 
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFW----------TLLSKQEEMVQKFVEEVLRINYKF 93

Query: 92  -IAAMQPVDIDPTTIRKP--KRRNIRISDDPQSVAARH--RREKISEKIRILQRLVP--- 143
            ++ ++     P+ + +   ++R+ R+ +D Q  A  +  R +   +  + L  L P   
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 144 ------GGT-KMDTASML-DEAIRYVKFLKR---QIRLLQSNQCNIVGD--DHYNKLSLG 190
                  G+ K    + +  +     K   +   +I  L    CN      +   KL   
Sbjct: 153 VLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 191 ATTNTT 196
              N T
Sbjct: 209 IDPNWT 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.68
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.65
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.63
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.6
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.59
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.56
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.56
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.55
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.53
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.49
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.46
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.27
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.15
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.1
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.99
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.86
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.78
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.32

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.68  E-value=3.2e-17  Score=122.99  Aligned_cols=60  Identities=27%  Similarity=0.490  Sum_probs=56.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      ..|+.+||+||++||++|.+|++|||++ .|+||++||++||+||++|+.+++.|+.+...
T Consensus         8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~   68 (82)
T 1am9_A            8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS   68 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999997 89999999999999999999999999987654

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.65  E-value=1.4e-16  Score=127.06  Aligned_cols=59  Identities=22%  Similarity=0.490  Sum_probs=52.1

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850          117 DDPQSVAARHRREKISEKIRILQRLVPGGT----KMDTASMLDEAIRYVKFLKRQIRLLQSNQ  175 (236)
Q Consensus       117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~~----K~dkasIL~~AI~YIk~Lq~~v~~L~~~~  175 (236)
                      +..|+++||+||++||++|.+|++|||+|.    |++|++||++||+||++||.+++.|+...
T Consensus        28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~   90 (118)
T 4ati_A           28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE   90 (118)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999864    68899999999999999999999998653

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.63  E-value=2.5e-16  Score=115.63  Aligned_cols=55  Identities=24%  Similarity=0.469  Sum_probs=51.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFLKRQIRLLQ  172 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-~K~dkasIL~~AI~YIk~Lq~~v~~L~  172 (236)
                      .+|+.+||+||++||++|.+|++|||++ .|+||++||++||+||++||.++.=|+
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            6799999999999999999999999974 699999999999999999999987765

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.60  E-value=1.9e-16  Score=113.48  Aligned_cols=53  Identities=23%  Similarity=0.426  Sum_probs=48.8

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhHHHHHHHHHHHHHHHHHH
Q 047850          117 DDPQSVAARHRREKISEKIRILQRLVPGGT------KMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~~------K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      +..|+.+||+||++||+.|..|++|||.+.      |+||++||++||+||++|+.+++
T Consensus         6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            377999999999999999999999999865      78999999999999999998753

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.59  E-value=1.1e-16  Score=114.79  Aligned_cols=53  Identities=21%  Similarity=0.424  Sum_probs=48.2

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhHHHHHHHHHHHHHHHHHH
Q 047850          117 DDPQSVAARHRREKISEKIRILQRLVPGG-------TKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~-------~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      +..|+.+||+||++||..|..|+.|||.+       .|++||+||+.||+||++||++++
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999999999999953       577899999999999999998763

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.56  E-value=2.3e-15  Score=111.99  Aligned_cols=60  Identities=25%  Similarity=0.447  Sum_probs=55.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG--TKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~--~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      ..|+..||+||.+||+.|..|+++||.+  .|++|++||..||+||+.|+.+++.|+.+...
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~   75 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD   75 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999975  79999999999999999999999999887543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.56  E-value=3.9e-15  Score=111.31  Aligned_cols=59  Identities=27%  Similarity=0.504  Sum_probs=54.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC  176 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~  176 (236)
                      ..|+..||+||++||+.|..|+++||.  +.|++|++||..||+||++|+.+++.|+.+..
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~   64 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999997  48999999999999999999999999887654

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.55  E-value=8e-16  Score=113.44  Aligned_cols=49  Identities=31%  Similarity=0.455  Sum_probs=46.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKR  166 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~  166 (236)
                      ..|+.+||+||++||+.|.+|+.|||.|    .|+|||+||+.||+|||.|+.
T Consensus        11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            7799999999999999999999999976    799999999999999999974

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.53  E-value=8.5e-15  Score=111.25  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG---TKMDTASMLDEAIRYVKFLKRQIRLLQSNQ  175 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~---~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~  175 (236)
                      ..|+..||+||++||++|..|+++||.+   .|++|++||.+||+||++|+.+++.|..+.
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~   68 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999974   699999999999999999999998876543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.49  E-value=1.6e-14  Score=107.13  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=50.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhHHHHHHHHHHHHHHHHHHHHhhc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---GTKM-DTASMLDEAIRYVKFLKRQIRLLQSN  174 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~-dkasIL~~AI~YIk~Lq~~v~~L~~~  174 (236)
                      ..|++.||+||++||++|..|+.+||.   +.|. +|++||..||+||++|++++++++..
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~   67 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN   67 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            679999999999999999999999994   4565 79999999999999999999998754

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=6.2e-14  Score=104.85  Aligned_cols=59  Identities=22%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC  176 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~  176 (236)
                      ..|+..||+||..||++|..|+++||.   +.|++|+.||.+|++||+.|+.+.+.|+.+..
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~   64 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999995   47899999999999999999999999887653

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.27  E-value=1.4e-12  Score=94.90  Aligned_cols=52  Identities=25%  Similarity=0.467  Sum_probs=48.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      ..|+..||+|+..||+.|..||++||.  ..|++|+.||..||+||.+|++.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            569999999999999999999999996  5799999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.15  E-value=4.8e-11  Score=84.68  Aligned_cols=52  Identities=21%  Similarity=0.308  Sum_probs=47.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      ..|+.-||+|+..||+.|..||.+||.   ..|++|+.||..||+||+.|+..++
T Consensus         4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            358899999999999999999999996   5799999999999999999998764

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.10  E-value=6.5e-11  Score=107.83  Aligned_cols=51  Identities=22%  Similarity=0.449  Sum_probs=43.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVP-GGTKMDTASMLDEAIRYVKFLKRQI  168 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP-~~~K~dkasIL~~AI~YIk~Lq~~v  168 (236)
                      .+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..-
T Consensus        14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            67999999999999999999999999 4689999999999999999998643

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.99  E-value=1.4e-10  Score=106.98  Aligned_cols=52  Identities=29%  Similarity=0.422  Sum_probs=47.5

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhHHHHHHHHHHHHHHHHH
Q 047850          117 DDPQSVAARHRREKISEKIRILQRLVP----GGTKMDTASMLDEAIRYVKFLKRQI  168 (236)
Q Consensus       117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP----~~~K~dkasIL~~AI~YIk~Lq~~v  168 (236)
                      +++|+.+||+||++||+.|.+|+.|||    ...|+||++||..||+|||.|+...
T Consensus        14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~   69 (387)
T 4f3l_B           14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT   69 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred             cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence            378999999999999999999999999    5689999999999999999998543

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.86  E-value=2.9e-09  Score=80.07  Aligned_cols=48  Identities=21%  Similarity=0.474  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850          128 REKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKRQIRLLQSNQ  175 (236)
Q Consensus       128 R~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~  175 (236)
                      |..||++|.+|..|||.+    .|.+|++||..|||||++||++++.+....
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e   55 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE   55 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999974    478999999999999999999888876543

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.78  E-value=1.5e-09  Score=78.75  Aligned_cols=45  Identities=24%  Similarity=0.398  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHH
Q 047850          122 VAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKR  166 (236)
Q Consensus       122 ~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~  166 (236)
                      .-||+|+..||+.|..||++||.   ..|++|..||..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            34788899999999999999996   5799999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.32  E-value=1e-06  Score=67.93  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 047850          124 ARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQS  173 (236)
Q Consensus       124 ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~L~~  173 (236)
                      ||.|=..||+.|..||.+||.   ..|+.|..+|..||+||+.|+..++.-..
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~   85 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            467778899999999999995   57999999999999999999998876443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	3e-14
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	4e-10
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-09
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-09
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-09
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-08
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-08
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	7e-08

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 3e-14
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 128 REKISEKIRILQRLVPGGT-KMDTASMLDEAIRYVKFLKRQIRLLQS 173
           R  I++KI  L+ LV G   KM  + +L +AI Y+K+L++    L+ 
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (125), Expect = 4e-10
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 121 SVAARHRREKISEKIRILQRLVPG-------GTKMDTASMLDEAIRYVKFLKRQI 168
             A + RR +++  +  L  L+P              A+ ++ A RY++ L++  
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+    Q 
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 121 SVAARHRREKISEKIRILQRLVP---GGTKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           +V  R RR ++      L+  +P      K     +L +A  Y+  ++ + + L S
Sbjct: 11  NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 106 RKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFL 164
           R  KR          +   +  R  I++KI  L+ LV G   K++ +++L +AI Y++FL
Sbjct: 3   RGEKRTA-------HNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFL 55

Query: 165 KRQIRLLQS 173
           +   + L+ 
Sbjct: 56  QHSNQKLKQ 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 125 RHRREKISEKIRILQRLVPGG---TKMDTASMLDEAIRYVKFLKRQIRLLQS 173
           ++RR  +   +  L+ LVP G   ++  T S+L +A  ++K L+   R    
Sbjct: 10  KNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 125 RHRREKISEKIRILQRLVP------GGTKMDTASMLDEAIRYVKFLKRQ 167
           R RR+KI+  I  L +++P        +      +L +A  Y++ L++ 
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (109), Expect = 7e-08
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 106 RKPKRRNIRISDDPQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKF 163
           RK    + R +    ++  R R  K++E    L+R        ++    +L  AIRY++ 
Sbjct: 5   RKTTNADRRKA---ATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEG 61

Query: 164 LKRQIR 169
           L+  +R
Sbjct: 62  LQALLR 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.59
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.53
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.51
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.5
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.47

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.9e-16  Score=110.45  Aligned_cols=52  Identities=21%  Similarity=0.441  Sum_probs=48.2

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhHHHHHHHHHHHHHHHHH
Q 047850          117 DDPQSVAARHRREKISEKIRILQRLVPG-------GTKMDTASMLDEAIRYVKFLKRQI  168 (236)
Q Consensus       117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~-------~~K~dkasIL~~AI~YIk~Lq~~v  168 (236)
                      +..|+.+||+||++||+.|..|++|||+       ..|+||++||+.||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            3679999999999999999999999994       578999999999999999999865

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.9e-16  Score=113.09  Aligned_cols=60  Identities=27%  Similarity=0.490  Sum_probs=55.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      ..|+.+||+||++||+.|..|++|||++ .|+||++||.+||+||++|+.+++.|+.+...
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~   68 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999985 69999999999999999999999999876543

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-15  Score=110.62  Aligned_cols=59  Identities=22%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC  176 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~  176 (236)
                      ..|+.+||+||++||++|..|+++||+   ..|++|++||..||+||++|+.+++.|..+..
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   64 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID   64 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999996   46899999999999999999999999976653

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.3e-15  Score=107.50  Aligned_cols=52  Identities=25%  Similarity=0.467  Sum_probs=48.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhHHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG--TKMDTASMLDEAIRYVKFLKRQIR  169 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~--~K~dkasIL~~AI~YIk~Lq~~v~  169 (236)
                      ..|+..||+||++||+.|..|++|||++  .|+||++||..||+||++||+.|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            5699999999999999999999999984  689999999999999999998764

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.7e-15  Score=107.80  Aligned_cols=59  Identities=27%  Similarity=0.504  Sum_probs=54.4

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC  176 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~  176 (236)
                      ..|+.+||+||++||+.|..|++|||+  ..|++|++||..||+||+.|+.+++.|+.+..
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   64 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999996  57899999999999999999999999986643

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=108.10  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=54.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC  176 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~  176 (236)
                      ..|+.+||+||++||+.|..|+++||+   ..|++|++||..||+||++|+.+++.|+.+..
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   69 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999996   36899999999999999999999999976654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-15  Score=106.43  Aligned_cols=51  Identities=24%  Similarity=0.440  Sum_probs=47.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC------CCCChhHHHHHHHHHHHHHHHHH
Q 047850          118 DPQSVAARHRREKISEKIRILQRLVPGG------TKMDTASMLDEAIRYVKFLKRQI  168 (236)
Q Consensus       118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~------~K~dkasIL~~AI~YIk~Lq~~v  168 (236)
                      ..|+.+||+||++||+.|..|++|||.+      .|++|++||..||+||++||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            5699999999999999999999999963      48999999999999999998764

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.4e-15  Score=103.38  Aligned_cols=50  Identities=34%  Similarity=0.519  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850          128 REKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN  177 (236)
Q Consensus       128 R~kin~~~~~Lr~LVP~~-~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~  177 (236)
                      |++||++|..|++|||++ .|+||++||.+||+||++|+.+++.|+++...
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~   51 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMV   51 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999986 59999999999999999999999999987654