Citrus Sinensis ID: 048066

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSLHWL
Secondary Structure (PSIPRED)
cEEEcccccccHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHccccccccccccccHHHHHHHcccccccccccccccEEcccccccccEccHHHccc
Coil and Loop (DISEMBL)
gwadveipcfynplttalqprdktWQGMKTVAELRREhnfsipvnkdslykpierrprkfnplvipkslhwl
Flexible Loop (DISEMBL)
gwadveipcfynplttalqprdkTWQGMKTVAELrrehnfsipvnkdslykpierrprkfnplvipkslhwl
Low Complexity Region (SEG)
GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSLHWL
Disordered region (IsUnstruct)
**ADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNK**LY**********************
Disordered Region (DISOPRED)
GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVN**SLYKPIERRPRKFNPLVIPKSLH**
Disordered Region (DISEMBL)
GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSLHWL
Disordered Region (DISPRO)
GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSL**L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSLHWL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q14692	1282	Ribosome biogenesis prote	yes	no	0.958	0.053	0.507	1e-13
Q08965	1183	Ribosome biogenesis prote	yes	no	0.958	0.058	0.376	3e-08
O94653	1121	Ribosome biogenesis prote	yes	no	0.972	0.062	0.342	3e-06

>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 2    WADVEIPCFYNPLTTALQP--RDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
            W  V IP FYNP+T+ L+P     TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct: 1101 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKH 1160

Query: 60   FNPLVIPKSLH 70
            FN L IPK+L 
Sbjct: 1161 FNSLHIPKALQ 1171

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)

>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)

Query: 2    WADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFN 61
            W  V +  FYNP+T+ L      W+G++   ++R   N   P N DS Y  IER  R FN
Sbjct: 1006 WYPVRVKKFYNPVTSLLLKEKTEWKGLRLTGQIRAAMNLETPSNPDSAYHKIERVERHFN 1065

Query: 62   PLVIPKSLH 70
             L +PK++ 
Sbjct: 1066 GLKVPKAVQ 1074

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus. The depletion of BMS1 interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  V++  F   +T  L+     W GM+   E+R E     P+  +S Y+ I R  R F
Sbjct: 943  AWYPVQVRKFCTMVTNLLETDKTEWNGMRLTGEVRHELGLKTPLRPNSQYQEIVRPSRHF 1002

Query: 61   NPLVIPKSLH 70
            NPL +P SL 
Sbjct: 1003 NPLKVPASLQ 1012


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,664,601
Number of Sequences: 539616
Number of extensions: 997686
Number of successful extensions: 2125
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2121
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
224133372	1181	predicted protein [Populus trichocarpa]	0.972	0.059	0.842	1e-28
147781739	325	hypothetical protein VITISV_005397 [Viti	0.972	0.215	0.785	6e-28
356541129	1176	PREDICTED: ribosome biogenesis protein B	0.972	0.059	0.814	1e-27
357473081	1200	Ribosome biogenesis protein BMS1-like pr	0.972	0.058	0.814	2e-27
359477919	1139	PREDICTED: ribosome biogenesis protein B	0.972	0.061	0.785	2e-27
357473083	1175	Ribosome biogenesis protein BMS1-like pr	0.972	0.059	0.814	2e-27
298205174	1305	unnamed protein product [Vitis vinifera]	0.972	0.053	0.785	2e-27
356544500	1181	PREDICTED: ribosome biogenesis protein B	0.972	0.059	0.814	4e-27
449444194	1198	PREDICTED: ribosome biogenesis protein B	0.972	0.058	0.8	1e-26
449502901	553	PREDICTED: ribosome biogenesis protein B	0.972	0.126	0.8	2e-26

>gi|224133372|ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 62/70 (88%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  VE PCFYNPLTTALQPR+KTWQGMKTVAELRREHN  IPVNKDSLY+PIER P+KF
Sbjct: 1010 AWTQVEAPCFYNPLTTALQPRNKTWQGMKTVAELRREHNLPIPVNKDSLYRPIERTPKKF 1069

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1070 NPLVIPKSLQ 1079

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781739|emb|CAN69949.1| hypothetical protein VITISV_005397 [Vitis vinifera]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 63/70 (90%)

Query: 1   GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
            W +VE+PCF+NPLTTALQPRD+TWQGMKTVAELRRE+   +PVNKDSLY+PIER+ RKF
Sbjct: 155 AWTEVEVPCFFNPLTTALQPRDQTWQGMKTVAELRRENKLPVPVNKDSLYRPIERKARKF 214

Query: 61  NPLVIPKSLH 70
           NPLVIPKSL 
Sbjct: 215 NPLVIPKSLQ 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541129|ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 62/70 (88%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  VE+P FYNPLTTALQPRD TW+GMKTVAELRREHN +IPVNKDSLYK IER+PRKF
Sbjct: 1003 AWTQVEVPQFYNPLTTALQPRDMTWKGMKTVAELRREHNLAIPVNKDSLYKKIERKPRKF 1062

Query: 61   NPLVIPKSLH 70
            NP+VIPKSL 
Sbjct: 1063 NPVVIPKSLQ 1072

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473081|ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507880|gb|AES89022.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 62/70 (88%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  VE+P FYNPLTTALQPRD+TW+GM+TVAELRREHN  IPVNKDSLYK IER+PRKF
Sbjct: 1004 AWTQVEVPQFYNPLTTALQPRDQTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKF 1063

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1064 NPLVIPKSLQ 1073

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477919|ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 63/70 (90%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W +VE+PCF+NPLTTALQPRD+TWQGMKTVAELRRE+   +PVNKDSLY+PIER+ RKF
Sbjct: 969  AWTEVEVPCFFNPLTTALQPRDQTWQGMKTVAELRRENKLPVPVNKDSLYRPIERKARKF 1028

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1029 NPLVIPKSLQ 1038

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473083|ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507881|gb|AES89023.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 62/70 (88%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  VE+P FYNPLTTALQPRD+TW+GM+TVAELRREHN  IPVNKDSLYK IER+PRKF
Sbjct: 1004 AWTQVEVPQFYNPLTTALQPRDQTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKF 1063

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1064 NPLVIPKSLQ 1073

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205174|emb|CBI17233.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 63/70 (90%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W +VE+PCF+NPLTTALQPRD+TWQGMKTVAELRRE+   +PVNKDSLY+PIER+ RKF
Sbjct: 1135 AWTEVEVPCFFNPLTTALQPRDQTWQGMKTVAELRRENKLPVPVNKDSLYRPIERKARKF 1194

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1195 NPLVIPKSLQ 1204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544500|ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 61/70 (87%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  VE+P FYNPLTTALQPRD TW+GM+TVAELRREHN  IPVNKDSLYK IER+PRKF
Sbjct: 1008 AWTQVEVPQFYNPLTTALQPRDMTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKF 1067

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1068 NPLVIPKSLQ 1077

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444194|ref|XP_004139860.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 61/70 (87%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  VE+P FYNPLTTALQPRD+ WQGMKTVAELR+EHN  IP+NKDSLYKPIER+ RKF
Sbjct: 1028 AWTKVEVPKFYNPLTTALQPRDRVWQGMKTVAELRKEHNLPIPLNKDSLYKPIERQKRKF 1087

Query: 61   NPLVIPKSLH 70
            NPLVIPKSL 
Sbjct: 1088 NPLVIPKSLQ 1097

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502901|ref|XP_004161775.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 61/70 (87%)

Query: 1   GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
            W  VE+P FYNPLTTALQPRD+ WQGMKTVAELR+EHN  IP+NKDSLYKPIER+ RKF
Sbjct: 383 AWTKVEVPKFYNPLTTALQPRDRVWQGMKTVAELRKEHNLPIPLNKDSLYKPIERQKRKF 442

Query: 61  NPLVIPKSLH 70
           NPLVIPKSL 
Sbjct: 443 NPLVIPKSLQ 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2033050	1147	AT1G06720 [Arabidopsis thalian	0.944	0.059	0.764	7.6e-23
RGD|1308043	392	Bms1 "BMS1 homolog, ribosome a	0.944	0.173	0.528	7.8e-14
UNIPROTKB|F1RG23	399	BMS1 "Uncharacterized protein"	0.944	0.170	0.514	8.1e-14
UNIPROTKB|E1BPP2	1290	BMS1 "Uncharacterized protein"	0.944	0.052	0.528	1.7e-13
UNIPROTKB|Q14692	1282	BMS1 "Ribosome biogenesis prot	0.944	0.053	0.528	3.5e-13
UNIPROTKB|F1PKN2	1287	BMS1 "Uncharacterized protein"	0.944	0.052	0.528	3.5e-13
UNIPROTKB|F1NH69	1304	BMS1 "Uncharacterized protein"	0.944	0.052	0.5	1.2e-12
CGD|CAL0002359	1210	BMS1 [Candida albicans (taxid:	0.944	0.056	0.426	1.6e-11
UNIPROTKB|Q5A9Y0	1210	BMS1 "Putative uncharacterized	0.944	0.056	0.426	1.6e-11
ZFIN|ZDB-GENE-060720-2	1221	bms1l "BMS1-like, ribosome ass	0.944	0.055	0.471	2.1e-11

TAIR|locus:2033050 AT1G06720 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 7.6e-23, P = 7.6e-23
 Identities = 52/68 (76%), Positives = 55/68 (80%)

Query:     2 WADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFN 61
             W  VE+P FYNPLTTALQPRDKTW GMKT  ELRRE N  IPVNKDSLYK IER+ +KFN
Sbjct:   977 WTTVEVPQFYNPLTTALQPRDKTWNGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFN 1036

Query:    62 PLVIPKSL 69
             PL IPK L
Sbjct:  1037 PLQIPKRL 1044

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

RGD|1308043 Bms1 "BMS1 homolog, ribosome assembly protein (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query:     2 WADVEIPCFYNPLTTALQP-RDK-TWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V IP FYNP+T+ L+P  +K TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct:   213 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTHQLRLAHGIKLKPNKDSLYKPILRQKKH 272

Query:    60 FNPLVIPKSL 69
             FN L IPK+L
Sbjct:   273 FNSLHIPKAL 282

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1RG23 BMS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 185 (70.2 bits), Expect = 8.1e-14, P = 8.1e-14
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query:     2 WADVEIPCFYNPLTTALQP-RDK-TWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V +P FYNP+T+ L+P  +K TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct:   218 WYPVSVPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLVHGIKLKPNKDSLYKPIIRQKKH 277

Query:    60 FNPLVIPKSL 69
             FN L IPK+L
Sbjct:   278 FNSLHIPKAL 287

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query:     2 WADVEIPCFYNPLTTALQP-RDK-TWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V IP FYNP+T+ L+P  +K TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct:  1109 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGIKLKANKDSLYKPIVRQKKH 1168

Query:    60 FNPLVIPKSL 69
             FN L IPK+L
Sbjct:  1169 FNSLHIPKAL 1178

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query:     2 WADVEIPCFYNPLTTALQP-RDK-TWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V IP FYNP+T+ L+P  +K TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct:  1101 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKH 1160

Query:    60 FNPLVIPKSL 69
             FN L IPK+L
Sbjct:  1161 FNSLHIPKAL 1170

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISS;IDA

GO:0042255 "ribosome assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query:     2 WADVEIPCFYNPLTTALQP-RDK-TWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V IP FYNP+T+ L+P  +K TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct:  1106 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVKLKPNKDSLYKPIVRQKKH 1165

Query:    60 FNPLVIPKSL 69
             FN L IPK+L
Sbjct:  1166 FNSLHIPKAL 1175

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query:     2 WADVEIPCFYNPLTTALQPRDK--TWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V IP FYNP+T+ L+P  +  +W+GM+T  +LR +    +  NKDSLYKPI R  R 
Sbjct:  1121 WYPVSIPKFYNPVTSLLKPAGEKDSWKGMRTTGQLRHDQGIKLKQNKDSLYKPIVREKRH 1180

Query:    60 FNPLVIPKSL 69
             FN L IPK+L
Sbjct:  1181 FNKLHIPKAL 1190

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0002359 BMS1 [Candida albicans (taxid:5476)]

 Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 29/68 (42%), Positives = 45/68 (66%)

Query:     2 WADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFN 61
             W  V++  FYNP+T+ L  +   W+GM+   ++R + N + P+N DS YK +ER  R+FN
Sbjct:  1032 WYPVKVKKFYNPVTSLLLGQHSEWKGMRLTGQVRADENIATPLNVDSQYKKVERVERRFN 1091

Query:    62 PLVIPKSL 69
             PL +PKS+
Sbjct:  1092 PLKVPKSI 1099

GO:0035690 "cellular response to drug" evidence=IMP

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034511 "U3 snoRNA binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

UNIPROTKB|Q5A9Y0 BMS1 "Putative uncharacterized protein BMS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 29/68 (42%), Positives = 45/68 (66%)

Query:     2 WADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFN 61
             W  V++  FYNP+T+ L  +   W+GM+   ++R + N + P+N DS YK +ER  R+FN
Sbjct:  1032 WYPVKVKKFYNPVTSLLLGQHSEWKGMRLTGQVRADENIATPLNVDSQYKKVERVERRFN 1091

Query:    62 PLVIPKSL 69
             PL +PKS+
Sbjct:  1092 PLKVPKSI 1099

GO:0035690 "cellular response to drug" evidence=IMP

ZFIN|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query:     2 WADVEIPCFYNPLTTALQP--RDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
             W  V +P  YNP+T+ L P  +  TW GM+T+ +L+ +        +DSLYKPIER+ R 
Sbjct:  1041 WYPVSVPRLYNPVTSLLMPVGQKHTWSGMRTLGQLKHDLGIHNKPKQDSLYKPIERQVRH 1100

Query:    60 FNPLVIPKSL 69
             FNPL IPK L
Sbjct:  1101 FNPLRIPKEL 1110

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00640202	hypothetical protein (1181 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•	•		•		0.909
	gw1.X.2964.1	hypothetical protein (516 aa)				•	•		•		0.896
	eugene3.00160311	hypothetical protein (691 aa)				•	•		•		0.894
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•	•		•		0.884
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•		•		0.853
	gw1.III.139.1	hypothetical protein (784 aa)				•	•		•		0.785
	estExt_fgenesh4_pg.C_LG_V1631	hypothetical protein (799 aa)				•	•		•	•	0.763
	eugene3.00090493	hypothetical protein (840 aa)				•				•	0.752
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•			•		0.748
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•			•		0.747

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	7e-07

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 44.0 bits (103), Expect = 7e-07
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 2   WADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFN 61
           +  VE+   + P+   L      W+G++ + E+R     +      +     E       
Sbjct: 922 FVPVEVHRIFIPVDNLL----GKWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEE 977

Query: 62  PLVIPKSL 69
              +P+ +
Sbjct: 978 DYSLPREI 985

Length = 1077

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.5

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=3.7e-15  Score=122.32  Aligned_cols=67  Identities=15%  Similarity=0.300  Sum_probs=64.7

Q ss_pred             CeEecCCCccchhhhccCCCCCCCcccchhHHHHHHHhCCCCCCCCCCCCCcccCCCCCCCCCcCCccccC
Q 048066            1 GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSLHW   71 (72)
Q Consensus         1 tW~~V~~~kFYnPVtsll~~~~~~W~gMrt~geLR~e~~i~~p~~~DS~Yk~IeR~~r~FnpL~IPk~Lq~   71 (72)
                      +||||++.+|||||+|||.    +|+|+|.+||+|...|+..|-++||.|-.+||-.++|+.+.+|+.+|+
T Consensus       921 ~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~  987 (1077)
T COG5192         921 CFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIES  987 (1077)
T ss_pred             eeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHh
Confidence            6999999999999999996    599999999999999999999999999999999999999999999885

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00