Citrus Sinensis ID: 048244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccEEEEcccccccccccEEEEEEHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
ADLRRVIKSTGTLLLAFLIgseghrnrSVVMVRSQlsnpiispndhwgTWTALLVTGAFGlwsektklgSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVpmrslgtdSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLaskippeaspangtevdkesnsedktpvLQTATALAISFVICKTATYLSnlfgiqggslpgVTAIVVILATLlpkqfsylapagDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASnanvggpttacgmattkgwgslvvpGILAGIFGISMATFLGLGFGTTVLKHL
Flexible Loop (DISEMBL)
adlrrvikSTGTLLLAFligseghrnrSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Low Complexity Region (SEG)
ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVflefllplsiplllfRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Disordered region (IsUnstruct)
*****VIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLAS*************************VLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVL***
Disordered Region (DISOPRED)
***RRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEAS******************VLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Disordered Region (DISEMBL)
ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEA*****************TPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Disordered Region (DISPRO)
ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
O31634	396	Uncharacterized membrane	yes	no	0.886	0.924	0.307	4e-41

>sp|O31634|YJCL_BACSU Uncharacterized membrane protein YjcL OS=Bacillus subtilis (strain 168) GN=yjcL PE=4 SV=1

 Score =  169 bits (428), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 194/393 (49%), Gaps = 27/393 (6%)

Query: 38  NPIISPNDHWGTWTALLVTGA--FGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEA 95
           + +IS +D W  W  + V  A   GL  ++ K  S VS A+++    +  +N+G++P E+
Sbjct: 2   HSLISSDDVWVLWGFIAVWAAVSIGL-EQRFKWASAVSGAIIALAGAMVFTNVGVLPVES 60

Query: 96  KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRS 155
             Y     +++PL+IPLLLF+ ++R+I + +  LL  FL+ SV T +G+++AF L+    
Sbjct: 61  PVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHI 120

Query: 156 LGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTL-- 213
              D  KI      SYIGG +N+ A++         ++A V ADN + A+ F IL ++  
Sbjct: 121 PYLD--KIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPA 178

Query: 214 ------------ASKIPPEASPANGTE-VDKESNSEDKTPVLQTATALAISFVICKTATY 260
                         K+  + +  N  E   K  +   K        A A+  V  K + Y
Sbjct: 179 LKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGY 238

Query: 261 LSNLF------GIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGA 314
             ++F      G  G     +T++ V++  L P+ F  L  + + L   L+ +FF V+G 
Sbjct: 239 FKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQE-LGTFLIYLFFVVIGI 297

Query: 315 SGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGM 374
              +  ++  AP I LF  +    +LA+ L  GKLF   L+ +L+A NA VGGPTTA  M
Sbjct: 298 PADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAM 357

Query: 375 ATTKGWGSLVVPGILAGIFGISMATFLGLGFGT 407
           A  KGW  LV P +L G  G  +  ++G   G 
Sbjct: 358 AIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGN 390

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
225464559	494	PREDICTED: uncharacterized membrane prot	0.949	0.793	0.774	1e-160
302143807	1178	unnamed protein product [Vitis vinifera]	0.958	0.336	0.768	1e-160
224135175	445	predicted protein [Populus trichocarpa]	0.929	0.862	0.789	1e-160
147769316	1230	hypothetical protein VITISV_024875 [Viti	0.958	0.321	0.765	1e-160
359490478	449	PREDICTED: uncharacterized membrane prot	0.990	0.910	0.719	1e-155
255545198	965	conserved hypothetical protein [Ricinus	0.929	0.397	0.761	1e-151
449456321	459	PREDICTED: uncharacterized membrane prot	0.929	0.836	0.719	1e-151
224110632	385	predicted protein [Populus trichocarpa]	0.905	0.971	0.744	1e-150
449445995	463	PREDICTED: uncharacterized membrane prot	0.963	0.859	0.681	1e-149
449485472	463	PREDICTED: uncharacterized membrane prot	0.963	0.859	0.681	1e-149

>gi|225464559|ref|XP_002272875.1| PREDICTED: uncharacterized membrane protein yjcL [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/394 (77%), Positives = 348/394 (88%), Gaps = 2/394 (0%)

Query: 22  EGHRNR-SVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTL 80
             ++NR   V VRSQLS PIISP DHWGTWTAL  TGAFGLWSEKTK+GSMVSAALVS L
Sbjct: 101 HANQNRHRFVKVRSQLSGPIISPEDHWGTWTALFATGAFGLWSEKTKIGSMVSAALVSIL 160

Query: 81  LGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVAT 140
           +G+AASNLGIIPY+A AY++ +EFLLP+++PLLLFRAD+R+++QSTG LLLAFLLGSVAT
Sbjct: 161 VGMAASNLGIIPYDAPAYSIVMEFLLPITLPLLLFRADMRQVMQSTGTLLLAFLLGSVAT 220

Query: 141 TVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADN 200
             GTLVAFL+VPMRSLG DSWKIA+A MGSYIGG++NYVAIS+ALGVSPSVLAAG+AADN
Sbjct: 221 IAGTLVAFLVVPMRSLGQDSWKIAAALMGSYIGGAVNYVAISKALGVSPSVLAAGIAADN 280

Query: 201 VITAIYFMILFTLASKIPPEASP-ANGTEVDKESNSEDKTPVLQTATALAISFVICKTAT 259
           VI A+YFMILF LASKIPPE     N   ++ ES+S  K PVLQTATALA+SFVIC +AT
Sbjct: 281 VICALYFMILFALASKIPPETPKLTNDVALNMESDSGSKLPVLQTATALAVSFVICLSAT 340

Query: 260 YLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIW 319
           YL+ LFGIQGG+LP +TAIVV+LAT LP  F YLAPAGDT+A+VLMQVFF+VVGASGSIW
Sbjct: 341 YLTKLFGIQGGTLPSITAIVVVLATALPMYFGYLAPAGDTIAVVLMQVFFAVVGASGSIW 400

Query: 320 NVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKG 379
           NVINTAPSIF+FALVQV VHLA+ILGLGKLF  DLKLLL+ASNAN+GGPTTACGMAT KG
Sbjct: 401 NVINTAPSIFMFALVQVMVHLAVILGLGKLFRLDLKLLLLASNANIGGPTTACGMATAKG 460

Query: 380 WGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
           W SLVVPGILAGIFGIS+ATFLG+GFG  VL+H+
Sbjct: 461 WSSLVVPGILAGIFGISIATFLGIGFGVMVLRHM 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143807|emb|CBI22668.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/397 (76%), Positives = 346/397 (87%), Gaps = 1/397 (0%)

Query: 18  LIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALV 77
           LI          V VRSQLS PIISP DHWGTWTAL  TGAFGLWSEKTK+GSMVSAALV
Sbjct: 46  LIFHANQNRHRFVKVRSQLSGPIISPEDHWGTWTALFATGAFGLWSEKTKIGSMVSAALV 105

Query: 78  STLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGS 137
           S L+G+AASNLGIIPY+A AY++ +EFLLP+++PLLLFRAD+R+++QSTG LLLAFLLGS
Sbjct: 106 SILVGMAASNLGIIPYDAPAYSIVMEFLLPITLPLLLFRADMRQVMQSTGTLLLAFLLGS 165

Query: 138 VATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVA 197
           VAT  GTLVAFL+VPMRSLG DSWKIA+A MGSYIGG++NYVAIS+ALGVSPSVLAAG+A
Sbjct: 166 VATIAGTLVAFLVVPMRSLGQDSWKIAAALMGSYIGGAVNYVAISKALGVSPSVLAAGIA 225

Query: 198 ADNVITAIYFMILFTLASKIPPEASP-ANGTEVDKESNSEDKTPVLQTATALAISFVICK 256
           ADNVI A+YFMILF LASKIPPE     N   ++ ES+S  K PVLQTATALA+SFVIC 
Sbjct: 226 ADNVICALYFMILFALASKIPPETPKLTNDVALNMESDSGSKLPVLQTATALAVSFVICL 285

Query: 257 TATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASG 316
           +ATYL+ LFGIQGG+LP +TAIVV+LAT LP  F YLAPAGDT+A+VLMQVFF+VVGASG
Sbjct: 286 SATYLTKLFGIQGGTLPSITAIVVVLATALPMYFGYLAPAGDTIAVVLMQVFFAVVGASG 345

Query: 317 SIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMAT 376
           SIWNVINTAPSIF+FALVQV VHLA+ILGLGKLF  DLKLLL+ASNAN+GGPTTACGMAT
Sbjct: 346 SIWNVINTAPSIFMFALVQVMVHLAVILGLGKLFRLDLKLLLLASNANIGGPTTACGMAT 405

Query: 377 TKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
            KGW SLVVPGILAGIFGIS+ATFLG+GFG  VL+H+
Sbjct: 406 AKGWSSLVVPGILAGIFGISIATFLGIGFGVMVLRHM 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135175|ref|XP_002327584.1| predicted protein [Populus trichocarpa] gi|222836138|gb|EEE74559.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 304/385 (78%), Positives = 341/385 (88%), Gaps = 1/385 (0%)

Query: 30  VMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLG 89
           V V SQL  PIISP+DHWGTWTAL  TGAFG+WSE+TK+GSM+SAALVS L+GLAASN+G
Sbjct: 61  VKVCSQLRYPIISPDDHWGTWTALFATGAFGIWSERTKIGSMLSAALVSILVGLAASNVG 120

Query: 90  IIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL 149
           IIPYEA+AY+V LE+LLPL++PLLLFRADLR + +STG LLLAFLLGSVAT +GT VAFL
Sbjct: 121 IIPYEARAYSVVLEYLLPLTVPLLLFRADLRNVFRSTGTLLLAFLLGSVATVIGTFVAFL 180

Query: 150 LVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMI 209
           +VPMRSLG D+WKIA+A MGSYIGGS+NYVA++EALG SPSV+AAGVAADNVI AIYFM+
Sbjct: 181 MVPMRSLGQDNWKIAAALMGSYIGGSVNYVAVTEALGASPSVVAAGVAADNVICAIYFMV 240

Query: 210 LFTLASKIPPEASPA-NGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQ 268
           LF LASKIPPE S +  G EVD  SNSEDK PVLQTATALAISF+ICK   YL+ L  IQ
Sbjct: 241 LFGLASKIPPEVSTSTKGAEVDVSSNSEDKVPVLQTATALAISFMICKIGAYLTQLCKIQ 300

Query: 269 GGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSI 328
           GG+LP VTAIVV LATL P QF YLAPAGDTLA+VLMQVFF+VVGA GS+WNVINTAPSI
Sbjct: 301 GGTLPAVTAIVVFLATLFPAQFGYLAPAGDTLAMVLMQVFFAVVGAGGSLWNVINTAPSI 360

Query: 329 FLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGI 388
           FLFALVQVTVHLA+ILG GKL  FDLKLLL+ASNAN+GGPTTACGMAT KGWGSLVVPGI
Sbjct: 361 FLFALVQVTVHLAVILGFGKLLRFDLKLLLLASNANIGGPTTACGMATAKGWGSLVVPGI 420

Query: 389 LAGIFGISMATFLGLGFGTTVLKHL 413
           LAGIFG+S+ATFLG+GFG  VLK+L
Sbjct: 421 LAGIFGVSIATFLGIGFGMMVLKYL 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769316|emb|CAN74772.1| hypothetical protein VITISV_024875 [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 306/400 (76%), Positives = 348/400 (87%), Gaps = 4/400 (1%)

Query: 15  LAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSA 74
           L F      HR    V VRSQLS P ISP+DHWGTWTAL  TGAFGLWSEKTK+GSMVSA
Sbjct: 98  LIFHANQNRHR---FVKVRSQLSGPFISPDDHWGTWTALFATGAFGLWSEKTKIGSMVSA 154

Query: 75  ALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFL 134
           ALVS L+G+AASNLGIIPY+A AY++ +EFLLP+++PLLLFRAD+R+++QSTG LLLAFL
Sbjct: 155 ALVSILVGMAASNLGIIPYDAPAYSIVMEFLLPITLPLLLFRADMRQVMQSTGTLLLAFL 214

Query: 135 LGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAA 194
           LGSVAT  GTLVAFL+VPMRSLG DSWKIA+A MGSYIGG++NYVAIS+ALGVSPSVLAA
Sbjct: 215 LGSVATIAGTLVAFLVVPMRSLGHDSWKIAAALMGSYIGGAVNYVAISKALGVSPSVLAA 274

Query: 195 GVAADNVITAIYFMILFTLASKIPPEASP-ANGTEVDKESNSEDKTPVLQTATALAISFV 253
           G+AADNVI A+YFMILF LASKIPPE     N   ++ ES+S  K PVLQTATALA+SFV
Sbjct: 275 GIAADNVICALYFMILFALASKIPPETPKLTNDVALNMESDSGSKLPVLQTATALAVSFV 334

Query: 254 ICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVG 313
           IC +ATYL+ LFGIQGG+LP +TAIVV+LAT LP  F YLAPAGDT+A+VLMQVFF+VVG
Sbjct: 335 ICLSATYLTKLFGIQGGTLPSITAIVVVLATALPMYFGYLAPAGDTIAVVLMQVFFAVVG 394

Query: 314 ASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACG 373
           ASGSIWNVINTAPSIF+FALVQV VHLA+ILGLGKLF  DLKLLL+ASNAN+GGPTTACG
Sbjct: 395 ASGSIWNVINTAPSIFMFALVQVMVHLAVILGLGKLFRLDLKLLLLASNANIGGPTTACG 454

Query: 374 MATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
           MAT KGW SLVVPGILAGIFGIS+ATFLG+GFG  VL+H+
Sbjct: 455 MATAKGWSSLVVPGILAGIFGISIATFLGIGFGVMVLRHM 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490478|ref|XP_002273113.2| PREDICTED: uncharacterized membrane protein yjcL-like [Vitis vinifera] gi|302143806|emb|CBI22667.3| unnamed protein product [Vitis vinifera]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/413 (71%), Positives = 343/413 (83%), Gaps = 4/413 (0%)

Query: 2   DLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGL 61
            L R  K T    L F   S+  R+   V VRS L+ PIISP D WGTWTAL  TGAFG+
Sbjct: 40  SLWRSKKQTQLSPLIFPKSSDSIRS---VTVRSSLTFPIISPQDQWGTWTALFATGAFGI 96

Query: 62  WSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRR 121
           WSEKTK+GS +S ALVSTL+GLAASNLGII  EA AY+V L FLLPL++PLLLFRADLRR
Sbjct: 97  WSEKTKIGSALSGALVSTLVGLAASNLGIISCEAPAYSVVLNFLLPLAVPLLLFRADLRR 156

Query: 122 IVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAI 181
           ++QSTG LL+AFL+GSVATT+GT+VAFL+VPMRSLG DSWKIA+A MG +IGG++NYVAI
Sbjct: 157 VIQSTGALLMAFLIGSVATTIGTVVAFLMVPMRSLGQDSWKIAAALMGRHIGGAVNYVAI 216

Query: 182 SEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEAS-PANGTEVDKESNSEDKTP 240
           SEALGVS SVLAAG+AADNVI A+YF  LF LASKIPPE S  AN T ++++    +K P
Sbjct: 217 SEALGVSRSVLAAGLAADNVICAVYFTTLFALASKIPPEDSTSANDTGMNEQPEPGNKPP 276

Query: 241 VLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTL 300
           VL TATALA+SF ICK   +L+  FGIQGGSLP +TAIVVILAT  PKQFS LAPAG+T+
Sbjct: 277 VLLTATALAVSFAICKAGIFLTKYFGIQGGSLPAITAIVVILATAFPKQFSLLAPAGETM 336

Query: 301 ALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA 360
           A++LMQVFF+VVGASG+I NV+NTAPSIF+FALVQ+ VHLA+ILGLGKLF FDLKLLLIA
Sbjct: 337 AMILMQVFFTVVGASGNIGNVMNTAPSIFMFALVQIAVHLAVILGLGKLFRFDLKLLLIA 396

Query: 361 SNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
           SNANVGGPTTACGMAT KGW SLVVPGILAGIFGI++ATFLG+ FG TVLK +
Sbjct: 397 SNANVGGPTTACGMATAKGWSSLVVPGILAGIFGIAIATFLGIVFGVTVLKFM 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545198|ref|XP_002513660.1| conserved hypothetical protein [Ricinus communis] gi|223547568|gb|EEF49063.1| conserved hypothetical protein [Ricinus communis]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 293/385 (76%), Positives = 335/385 (87%), Gaps = 1/385 (0%)

Query: 30  VMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLG 89
           + +RSQL  P+ISP+DHWGTWTAL  TGAFG+WSE TK+GSMVSAALVSTL+GLAASN+G
Sbjct: 581 IKLRSQLRFPLISPDDHWGTWTALFATGAFGIWSEGTKVGSMVSAALVSTLVGLAASNIG 640

Query: 90  IIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL 149
           IIPYE  AY++ LEFLLPL++PLLLFRADLR +++STG L LAFLLGSVAT +GT VAFL
Sbjct: 641 IIPYETAAYSLVLEFLLPLTVPLLLFRADLRNVIRSTGKLFLAFLLGSVATIIGTTVAFL 700

Query: 150 LVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMI 209
           +VPMRSLG D+WKIA+A MGSYIGGS+NYVAISEALG SPSV+AAG+AADNVI A YFM 
Sbjct: 701 MVPMRSLGPDNWKIAAALMGSYIGGSVNYVAISEALGTSPSVVAAGIAADNVICATYFMA 760

Query: 210 LFTLASKIPPEASPA-NGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQ 268
           LF LASKIP E S + NG E+D ES+S  K PVLQ A ALAISF+IC+TATYL+ L  +Q
Sbjct: 761 LFALASKIPAENSASTNGVEMDVESSSTGKIPVLQMAAALAISFMICRTATYLTQLCKVQ 820

Query: 269 GGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSI 328
           GG+LP +TAIVV LAT  P QF  LAPAGDT+ALVLMQVFF+VVGASGSIWNVI TAPSI
Sbjct: 821 GGNLPAITAIVVFLATSFPVQFGRLAPAGDTIALVLMQVFFAVVGASGSIWNVIKTAPSI 880

Query: 329 FLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGI 388
           FLFALVQ+TVHLA++LGLG+LF FDLKLLL+ASNAN+GGPTTACGMAT KGW SLVVPGI
Sbjct: 881 FLFALVQLTVHLAVVLGLGRLFDFDLKLLLLASNANIGGPTTACGMATAKGWKSLVVPGI 940

Query: 389 LAGIFGISMATFLGLGFGTTVLKHL 413
           LAGIFGIS+ATFLG+ FG   LK+L
Sbjct: 941 LAGIFGISIATFLGVAFGMMFLKYL 965

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456321|ref|XP_004145898.1| PREDICTED: uncharacterized membrane protein YjcL-like [Cucumis sativus] gi|449525186|ref|XP_004169599.1| PREDICTED: uncharacterized membrane protein YjcL-like [Cucumis sativus]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/385 (71%), Positives = 328/385 (85%), Gaps = 1/385 (0%)

Query: 30  VMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLG 89
           V VRSQL +PII+ +D+WGTWTAL   G  G+WSEKTK+GS VSAALVSTL+GLAASN G
Sbjct: 75  VKVRSQLRHPIIAADDYWGTWTALFAIGTLGIWSEKTKVGSTVSAALVSTLVGLAASNFG 134

Query: 90  IIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL 149
           IIPYEA  Y++ +EFLLPLS+PLLLFRAD+R I++STG LL  FLLGSVAT +GT+VAFL
Sbjct: 135 IIPYEAMPYSIVMEFLLPLSVPLLLFRADIRHIIRSTGTLLGVFLLGSVATIIGTVVAFL 194

Query: 150 LVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMI 209
           +VPMRSLG D+WK+A+A MGSYIGGS+NYVAISEALGVSPSVLAAGVAADNVI+A+YF+ 
Sbjct: 195 MVPMRSLGPDNWKVAAALMGSYIGGSVNYVAISEALGVSPSVLAAGVAADNVISALYFVA 254

Query: 210 LFTLASKIPPEA-SPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQ 268
           LF LAS+ PPE  +  +    DK+ +   K PVLQTATA+  SF ICK  T+++N+  IQ
Sbjct: 255 LFALASRTPPEPLTSTDDASTDKDFDHGTKLPVLQTATAVVTSFAICKFVTWITNMCKIQ 314

Query: 269 GGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSI 328
           G +LPG+TA+VVILAT+LPKQF+YLAPA DT+AL+LMQVFF+VVGASGSIW VIN  PSI
Sbjct: 315 GANLPGITAVVVILATILPKQFNYLAPAADTIALILMQVFFAVVGASGSIWYVINNTPSI 374

Query: 329 FLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGI 388
           F+FALVQVTVHLAIIL  GKLF  DLKLLL+ASNAN+GGPTTACGMAT KGW SLVVP I
Sbjct: 375 FMFALVQVTVHLAIILCFGKLFRIDLKLLLLASNANIGGPTTACGMATAKGWRSLVVPSI 434

Query: 389 LAGIFGISMATFLGLGFGTTVLKHL 413
           LAGIFGI++ATFLG+GFG  +L+H+
Sbjct: 435 LAGIFGIAIATFLGVGFGLMILRHI 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110632|ref|XP_002333059.1| predicted protein [Populus trichocarpa] gi|222834146|gb|EEE72623.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/380 (74%), Positives = 318/380 (83%), Gaps = 6/380 (1%)

Query: 40  IISPNDHWGTWTALLVTGAFGLW-----SEKTKLGSMVSAALVSTLLGLAASNLGIIPYE 94
           +ISP D WG+WT L  TG FG+W        TK+GS ++ A VS LLGLAAS+LGII +E
Sbjct: 6   VISPTDQWGSWTILFATGVFGIWLANPSKAGTKIGSALNGASVSALLGLAASSLGIISFE 65

Query: 95  AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMR 154
           + AY++ LEFL PL+IPLLLFRADLRR+  STGI LLAFL+G+VAT +GTLVAFL+VPMR
Sbjct: 66  SPAYSILLEFLFPLTIPLLLFRADLRRVFTSTGIFLLAFLIGTVATMIGTLVAFLMVPMR 125

Query: 155 SLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLA 214
           SLG D+WKIASA MGSYIGGS+NYVA++EAL  SPSV+AAGVAADNVI AIYFM+LF LA
Sbjct: 126 SLGQDNWKIASALMGSYIGGSVNYVAVTEALAASPSVVAAGVAADNVICAIYFMVLFGLA 185

Query: 215 SKIPPE-ASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLP 273
           SKIPPE +S   G EVD  SNSE K PVLQTATALAISF+ICK   YL+ L  IQGG+LP
Sbjct: 186 SKIPPEVSSSTKGAEVDLSSNSESKVPVLQTATALAISFMICKIGAYLTQLCKIQGGTLP 245

Query: 274 GVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFAL 333
            VTAIVV LATL P QF YLAP GDTLA+VLMQVFF VVGA GSIWNVINTAPSIFLFAL
Sbjct: 246 AVTAIVVFLATLFPAQFGYLAPTGDTLAMVLMQVFFVVVGAGGSIWNVINTAPSIFLFAL 305

Query: 334 VQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIF 393
           VQVTVHLA+ILG GKL  FDLKLLL+ASNAN+GGPTTACGMAT KGW SLVVPGILAGIF
Sbjct: 306 VQVTVHLAVILGFGKLLRFDLKLLLLASNANIGGPTTACGMATAKGWDSLVVPGILAGIF 365

Query: 394 GISMATFLGLGFGTTVLKHL 413
           G+S+ATFLG+GFG  VLK+L
Sbjct: 366 GVSIATFLGIGFGMMVLKYL 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445995|ref|XP_004140757.1| PREDICTED: uncharacterized membrane protein YjcL-like [Cucumis sativus]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/402 (68%), Positives = 336/402 (83%), Gaps = 4/402 (0%)

Query: 16  AFLIGSEGH-RNRSVVMVRS--QLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMV 72
           +F   S G+ ++R  V VRS  +L+ P++SP D WG WT L   GAFG+WSEKTK+GS +
Sbjct: 62  SFRKSSNGNVQSRRDVAVRSHLKLNLPLVSPYDQWGNWTVLFSIGAFGIWSEKTKVGSAL 121

Query: 73  SAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLA 132
           S ALVSTL+GLAASN GII  +A A+A+ LEFLLPL++PLLLFRADLRR+++STG LLLA
Sbjct: 122 SGALVSTLVGLAASNFGIIASDAPAFAIVLEFLLPLAVPLLLFRADLRRVIKSTGTLLLA 181

Query: 133 FLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVL 192
           FLLGSV TTVGT+VA+ LVPMRSLG DSWKIA+A MG +IGG++NYVAIS+ALGVSPSVL
Sbjct: 182 FLLGSVGTTVGTVVAYFLVPMRSLGQDSWKIAAALMGRHIGGAVNYVAISDALGVSPSVL 241

Query: 193 AAGVAADNVITAIYFMILFTLASKIPPEASP-ANGTEVDKESNSEDKTPVLQTATALAIS 251
           AAG+AADNVI A+YF  LF LASK+PPE +   NG   D E    +K PVLQ+A+A+A+S
Sbjct: 242 AAGLAADNVICAVYFATLFALASKVPPEPTTLDNGVGKDAEVEPSNKLPVLQSASAVAVS 301

Query: 252 FVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSV 311
           F ICK  +YL+  FGIQGGS+P +TA++V+LAT+ PK F+YLAP+G+ +AL+LMQVFF+V
Sbjct: 302 FAICKVGSYLTKYFGIQGGSMPAITAVIVVLATIFPKLFAYLAPSGEAMALILMQVFFAV 361

Query: 312 VGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTA 371
           VGASG++W+VINTAPSIFLFA VQ++VHL II+GLGKL  FDLK LLIASNANVGGPTTA
Sbjct: 362 VGASGNVWSVINTAPSIFLFAFVQISVHLVIIIGLGKLLRFDLKSLLIASNANVGGPTTA 421

Query: 372 CGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
           CGMAT KGW S+V+PGILAGIFGI+MATFLG+GFG  VLK++
Sbjct: 422 CGMATAKGWSSMVIPGILAGIFGIAMATFLGIGFGMMVLKYM 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485472|ref|XP_004157180.1| PREDICTED: uncharacterized membrane protein YjcL-like [Cucumis sativus]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/402 (68%), Positives = 334/402 (83%), Gaps = 4/402 (0%)

Query: 16  AFLIGSEGH-RNRSVVMVRSQLSN--PIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMV 72
           +F   S G+ ++R  V VRS L    P++SP D WG WT L   GAFG+WSEKTK+GS +
Sbjct: 62  SFRKSSNGNVQSRRDVAVRSHLKFNLPLVSPYDQWGNWTVLFSIGAFGIWSEKTKVGSAL 121

Query: 73  SAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLA 132
           S ALVSTL+GLAASN GII  +A A+A+ LEFLLPL++PLLLFRADLRR+++STG LLLA
Sbjct: 122 SGALVSTLVGLAASNFGIIASDAPAFAIVLEFLLPLAVPLLLFRADLRRVIKSTGTLLLA 181

Query: 133 FLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVL 192
           FLLGSV TTVGT+VA+ LVPMRSLG DSWKIA+A MG +IGG++NYVAIS+ALGVSPSVL
Sbjct: 182 FLLGSVGTTVGTVVAYFLVPMRSLGQDSWKIAAALMGRHIGGAVNYVAISDALGVSPSVL 241

Query: 193 AAGVAADNVITAIYFMILFTLASKIPPEASP-ANGTEVDKESNSEDKTPVLQTATALAIS 251
           AAG+AADNVI A+YF  LF LASK+PPE +   NG   D E    +K PVLQ+A+A+A+S
Sbjct: 242 AAGLAADNVICAVYFATLFALASKVPPEPTTLDNGVGKDAEVEPSNKLPVLQSASAVAVS 301

Query: 252 FVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSV 311
           F ICK  +YL+  FGIQGGS+P +TA++V+LAT+ PK F+YLAP+G+ +AL+LMQVFF+V
Sbjct: 302 FAICKVGSYLTKYFGIQGGSMPAITAVIVVLATIFPKLFAYLAPSGEAMALILMQVFFAV 361

Query: 312 VGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTA 371
           VGASG++W+VINTAPSIFLFA VQ++VHL II+GLGKL  FDLK LLIASNANVGGPTTA
Sbjct: 362 VGASGNVWSVINTAPSIFLFAFVQISVHLVIIIGLGKLLRFDLKSLLIASNANVGGPTTA 421

Query: 372 CGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
           CGMAT KGW S+V+PGILAGIFGI+MATFLG+GFG  VLK++
Sbjct: 422 CGMATAKGWSSMVIPGILAGIFGIAMATFLGIGFGMMVLKYM 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2149559	461	AT5G52540 [Arabidopsis thalian	0.932	0.835	0.667	3.4e-132
TAIR|locus:2178697	443	AT5G24000 [Arabidopsis thalian	0.937	0.873	0.645	5.7e-130
UNIPROTKB|Q0C1S6	378	HNE_1609 "Putative membrane pr	0.871	0.952	0.307	1.1e-39
UNIPROTKB|Q8EAR8	415	SO_3828 "Uncharacterized prote	0.295	0.293	0.279	1.9e-12
TIGR_CMR|SO_3828	415	SO_3828 "conserved hypothetica	0.295	0.293	0.279	1.9e-12
GENEDB_PFALCIPARUM|PF13_0172	522	PF13_0172 "hypothetical protei	0.193	0.153	0.264	8.3e-10
UNIPROTKB|Q8IE07	522	PF13_0172 "Uncharacterized pro	0.193	0.153	0.264	8.3e-10
UNIPROTKB|Q47Y98	420	CPS_3548 "Putative membrane pr	0.479	0.471	0.245	3.1e-09
TIGR_CMR|CPS_3548	420	CPS_3548 "putative membrane pr	0.479	0.471	0.245	3.1e-09
TIGR_CMR|SO_1120	429	SO_1120 "xanthine/uracil perme	0.801	0.771	0.226	0.00044

TAIR|locus:2149559 AT5G52540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 261/391 (66%), Positives = 309/391 (79%)

Query:    27 RSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAAS 86
             RSV +  S LS P+ISPND WGTWTAL  TGA GLWSEKTK+G+ +S ALVSTL+GLAAS
Sbjct:    73 RSVTV--SSLSTPLISPNDEWGTWTALFATGALGLWSEKTKVGAAMSGALVSTLVGLAAS 130

Query:    87 NLGIIPYEAKAYAVXXXXXXXXXXXXXXXRADLRRIVQSTGILLLAFLLGSVATTVGTLV 146
             NLGII  +A A+AV               RADLRR+VQSTG LLLAFL+GSVATTVGT +
Sbjct:   131 NLGIISSQAPAFAVVLNFLLPLAVPLLLFRADLRRVVQSTGKLLLAFLIGSVATTVGTAL 190

Query:   147 AFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIY 206
             A+ LVPM+SLG DSWKIA+A MG +IGG++NYVAIS ALGV+PSVLAAG+AADNVI A+Y
Sbjct:   191 AYYLVPMKSLGPDSWKIAAALMGRHIGGAVNYVAISNALGVTPSVLAAGLAADNVICAVY 250

Query:   207 FMILFTLASKIPPEASPANGTEVDKESN--SE--DKTPVLQTATALAISFVICKTATYLS 262
             F  LF L SKIP EA P   T VD E+N  SE  +K PVL  AT +A+S  ICK    L+
Sbjct:   251 FTTLFALGSKIPAEAVPPPTTIVDAETNEASETKNKIPVLLIATGIAVSLAICKAGALLT 310

Query:   263 NLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVI 322
               FGI GGSLP +TA+VVILAT+ P QF  LAP+G+ +AL+LMQVFF+VVGASG+IW+VI
Sbjct:   311 KYFGISGGSLPAITAVVVILATVFPSQFGRLAPSGEAMALILMQVFFTVVGASGNIWSVI 370

Query:   323 NTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGS 382
             NTAPSIFLFALVQ+  HLA+ILG+GKL + +L+LLL+ASNANVGGPTTA GMAT KGW S
Sbjct:   371 NTAPSIFLFALVQIGTHLAVILGIGKLLNIELRLLLLASNANVGGPTTAAGMATAKGWNS 430

Query:   383 LVVPGILAGIFGISMATFLGLGFGTTVLKHL 413
             L+VPGILAGIFGI++ATF+G+ FG  VLK +
Sbjct:   431 LIVPGILAGIFGIAIATFIGIAFGVKVLKFM 461

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2178697 AT5G24000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
 Identities = 251/389 (64%), Positives = 305/389 (78%)

Query:    27 RSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAAS 86
             R  V V SQL  P+ISP+DHW  W AL   GAFG+WSEKTK+GSMVS AL STLLGLAAS
Sbjct:    55 RRRVKVYSQLRFPLISPDDHWSQWAALFAAGAFGVWSEKTKIGSMVSGALTSTLLGLAAS 114

Query:    87 NLGIIPYEAKAYAVXXXXXXXXXXXXXXXRADLRRIVQSTGILLLAFLLGSVATTVGTLV 146
             NL +IP+E  +Y                 RADLRRI++STG LLLAFL+GSVAT VGT+V
Sbjct:   115 NLRLIPFETPSYGFFMEFLLPHTIPLLLFRADLRRIIRSTGSLLLAFLIGSVATIVGTVV 174

Query:   147 AFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIY 206
             AF+LVPMRSLG D+WKIA+A MGSYIGGS+N+VAISEAL +SPSV+AAGVA DNVI A++
Sbjct:   175 AFMLVPMRSLGPDNWKIAAALMGSYIGGSLNFVAISEALQISPSVIAAGVAVDNVICALH 234

Query:   207 FMILFTLASKIPPEASPANGTEVD--KESNSEDKTPVLQTATALAISFVICKTATYLSNL 264
             FM+LF LASKIPPE + A+  + D  K+   EDK  V+ T+ AL++SF+ICK A  L+ L
Sbjct:   235 FMVLFALASKIPPETASASSPDADMTKDDKLEDKNRVVSTSIALSVSFLICKAAITLTTL 294

Query:   265 FGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINT 324
             F IQG  LP VTAI ++LAT  P  F+ LAP+ +T++L+LMQVFF+++GA+GS+WNVINT
Sbjct:   295 FKIQGVMLPAVTAITIVLATSFPDFFNSLAPSAETISLILMQVFFTILGATGSVWNVINT 354

Query:   325 APSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLV 384
             APSIFLFA +QV VHLA+ L LGKLF  D+KLLL+ASNAN+GGPTTAC MAT KGW SLV
Sbjct:   355 APSIFLFAAIQVMVHLAVTLVLGKLFCIDMKLLLLASNANIGGPTTACAMATAKGWTSLV 414

Query:   385 VPGILAGIFGISMATFLGLGFGTTVLKHL 413
             VPGIL+G+FG+S+ATFLG+G G  VLK L
Sbjct:   415 VPGILSGVFGVSIATFLGIGCGVFVLKRL 443

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q0C1S6 HNE_1609 "Putative membrane protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 114/371 (30%), Positives = 189/371 (50%)

Query:    40 IISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYA 99
             +ISP++ +G     LV  A  +  EKT +G  VS   +  +  + A+NLG+IP  A  Y 
Sbjct:     1 MISPDNVFGLLAVFLVLSAIAVALEKTPVGRRVSGVGLLLIGSILAANLGLIPRSAPVYG 60

Query:   100 VXXXXXXXXXXXXXXXRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTD 159
                             +ADL +I +  G +LLAF LG++    G L+   L+    LG  
Sbjct:    61 AIWTYLVPIAIALFLLKADLLKIFREGGRVLLAFSLGTLGVAAGALLGGSLL---DLGPG 117

Query:   160 SWKIASAFMGSYIGGSINYVAISEALGVSP-SVLAAGVAADNVITAIYFMILFTLAS-KI 217
               +IA+ F  +Y+GGS+N+VA++EA+G +  S LAA +A DN++   + M +  LA+   
Sbjct:   118 GPEIAAVFSATYVGGSLNFVAVAEAIGFTDNSRLAAALAIDNILGVSFIMAMNLLAAWPA 177

Query:   218 PPEASPANGTEVDK---ESNSEDKTPV-LQTA-TALAISFVICKTATYLSNLFGIQGGSL 272
                A P   + + +   ++ + + + + LQ+  T+LAI+  I   +  L++  GI   +L
Sbjct:   178 LHRAYPWRSSTIFEGPDDTQAPELSAISLQSILTSLAIAATIVAVSMALADRLGITSYAL 237

Query:   273 PGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFA 332
               VT    ++AT   +Q S L    D +A+V M +FF+++GA   +  V++ AP  FL  
Sbjct:   238 LLVTTFTALIATFGRRQLSRLQ-GEDLVAMVFMYMFFAIIGAGTDLKGVLDAAPEYFLLV 296

Query:   333 LVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGI 392
              +    +L +    G     +   L++A  A + GP  A  +A    W +LVVPGIL G+
Sbjct:   297 AMIFAGNLLVTFIAGWFLKLNYAELIVACIACIAGPPVAAAIAIMMKWRNLVVPGILTGV 356

Query:   393 FGISMATFLGL 403
              G  +  F G+
Sbjct:   357 LGYIIGNFTGI 367

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EAR8 SO_3828 "Uncharacterized protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 120 (47.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 36/129 (27%), Positives = 65/129 (50%)

Query:   278 IVVILATL-LPKQFS---YLAPAGDT-LALVLMQVFFSVVGASGSIWNVINTAPSIFLFA 332
             +VVI+ T+ L   FS   +L  AG + +A   + +  + +G    +  V++T P  FL  
Sbjct:   276 LVVIVTTIGLAMSFSPMRHLEAAGASKVASAFLYILVATIGLHMDVSKVLDT-PIYFLVG 334

Query:   333 LVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGI 392
             ++ + VH + +  + KL    L  + + S ANVGG  +A  +A      +L   G+L  +
Sbjct:   335 IIWMIVHASFMFLIAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFH-PALAPVGVLLAV 393

Query:   393 FGISMATFL 401
             FG  + T++
Sbjct:   394 FGYVLGTYM 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3828 SO_3828 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 120 (47.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 36/129 (27%), Positives = 65/129 (50%)

Query:   278 IVVILATL-LPKQFS---YLAPAGDT-LALVLMQVFFSVVGASGSIWNVINTAPSIFLFA 332
             +VVI+ T+ L   FS   +L  AG + +A   + +  + +G    +  V++T P  FL  
Sbjct:   276 LVVIVTTIGLAMSFSPMRHLEAAGASKVASAFLYILVATIGLHMDVSKVLDT-PIYFLVG 334

Query:   333 LVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGI 392
             ++ + VH + +  + KL    L  + + S ANVGG  +A  +A      +L   G+L  +
Sbjct:   335 IIWMIVHASFMFLIAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFH-PALAPVGVLLAV 393

Query:   393 FGISMATFL 401
             FG  + T++
Sbjct:   394 FGYVLGTYM 402

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF13_0172 PF13_0172 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 112 (44.5 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
 Identities = 23/87 (26%), Positives = 51/87 (58%)

Query:   131 LAFLLGSVATTVGTLVAFLLVP----MRSLGTDSW---KIASAFMGSYIGGSINYVAISE 183
             +AF  G+++T +G +++++L+        +  DS+    IA   + +YIGG IN++ +S+
Sbjct:   133 IAFFFGAISTIIGVVMSYILIKHIFIKNEIDIDSYYLKNIACCLVSTYIGGFINFIEVSD 192

Query:   184 ALGVSPSVLAAGVAADNVITAIYFMIL 210
              L ++ ++  +    D++ T I+ M+L
Sbjct:   193 LLNLNTTLRNSVFILDDMFTNIFLMML 219

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IE07 PF13_0172 "Uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 112 (44.5 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
 Identities = 23/87 (26%), Positives = 51/87 (58%)

Query:   131 LAFLLGSVATTVGTLVAFLLVP----MRSLGTDSW---KIASAFMGSYIGGSINYVAISE 183
             +AF  G+++T +G +++++L+        +  DS+    IA   + +YIGG IN++ +S+
Sbjct:   133 IAFFFGAISTIIGVVMSYILIKHIFIKNEIDIDSYYLKNIACCLVSTYIGGFINFIEVSD 192

Query:   184 ALGVSPSVLAAGVAADNVITAIYFMIL 210
              L ++ ++  +    D++ T I+ M+L
Sbjct:   193 LLNLNTTLRNSVFILDDMFTNIFLMML 219

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q47Y98 CPS_3548 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 109 (43.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
 Identities = 53/216 (24%), Positives = 91/216 (42%)

Query:    67 KLGSMVSAALVSTLLGLAASNLGIIPYE-AKAYAVXXXXXXXXXXXXXXXRADLRRIVQS 125
             K    V A L+  LL    +  GI+  E ++   V                 D++ I   
Sbjct:    42 KFYKYVPALLMCYLLPSFLNTFGIVSAEVSQVDEVAKYFLLPACLVLLTLSIDVKAIAGL 101

Query:   126 TGILLLAFLLGSVATTVGTLVAFLLV----P--MRSLGTDS-WKIASAFMGSYIGGSINY 178
                 ++ FL G+V   +G  +A L+V    P  +   G ++ W+  +A  GS+IGG  N 
Sbjct:   102 GSKAIIMFLTGTVGVVIGGPIALLIVSAIWPELIGVTGPEAVWRGMAALAGSWIGGGANM 161

Query:   179 VAISEALGVSPSVLAAGVAADNVITAIYFMILFTLAS--KIPPEASPANGTEVDK---ES 233
             +A+ E       +    V  D V+  I+  +L  +A+  K     S A+ + +DK   + 
Sbjct:   162 LAMKEIFEADGKIFTIMVTVDIVVANIWMAVLLYIAANHKAIDAKSGADTSGIDKLIADV 221

Query:   234 NSEDK----TPVLQTAT-ALAISFVICKTATYLSNL 264
              + DK    TP L+     +AI+F     A + ++L
Sbjct:   222 EAFDKEHKRTPELKDFIFIIAIAFGAAGFAHFAADL 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3548 CPS_3548 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 109 (43.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
 Identities = 53/216 (24%), Positives = 91/216 (42%)

Query:    67 KLGSMVSAALVSTLLGLAASNLGIIPYE-AKAYAVXXXXXXXXXXXXXXXRADLRRIVQS 125
             K    V A L+  LL    +  GI+  E ++   V                 D++ I   
Sbjct:    42 KFYKYVPALLMCYLLPSFLNTFGIVSAEVSQVDEVAKYFLLPACLVLLTLSIDVKAIAGL 101

Query:   126 TGILLLAFLLGSVATTVGTLVAFLLV----P--MRSLGTDS-WKIASAFMGSYIGGSINY 178
                 ++ FL G+V   +G  +A L+V    P  +   G ++ W+  +A  GS+IGG  N 
Sbjct:   102 GSKAIIMFLTGTVGVVIGGPIALLIVSAIWPELIGVTGPEAVWRGMAALAGSWIGGGANM 161

Query:   179 VAISEALGVSPSVLAAGVAADNVITAIYFMILFTLAS--KIPPEASPANGTEVDK---ES 233
             +A+ E       +    V  D V+  I+  +L  +A+  K     S A+ + +DK   + 
Sbjct:   162 LAMKEIFEADGKIFTIMVTVDIVVANIWMAVLLYIAANHKAIDAKSGADTSGIDKLIADV 221

Query:   234 NSEDK----TPVLQTAT-ALAISFVICKTATYLSNL 264
              + DK    TP L+     +AI+F     A + ++L
Sbjct:   222 EAFDKEHKRTPELKDFIFIIAIAFGAAGFAHFAADL 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|SO_1120 SO_1120 "xanthine/uracil permease family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
 Identities = 81/357 (22%), Positives = 147/357 (41%)

Query:    31 MVRSQLSN-PI-ISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNL 88
             +V   ++N PI ++P      +    V G  G +S +T LG++  + +   +L L     
Sbjct:    63 IVMGLMANYPIALAPGMGLNAFFTYTVVGEMG-YSWETALGAVFLSGICFLILSLVRIRE 121

Query:    89 GIIPYEAKAYAVXXXXXXXXXXXXXXXRADLRRIVQSTGILLLAFLLGSVATTVGTLVAF 148
              I+     +  +               ++    +V S   L+    + +    +  L  F
Sbjct:   122 WIVNSIPMSLRIGIAAGIGLFLALIGLKS-AGIVVASPATLVTMGDITAFPAVMAVLGFF 180

Query:   149 LLVPMRSLGTDSWKIASAFMGSYIG---GSINYVAI-SEALGVSPSVLAAG------VAA 198
             L++ M   G  S  I S  + + +G   G ++Y  I S    ++P+ +         V  
Sbjct:   181 LIIAMVQRGMKSAVILSILIITGLGLLFGDVHYNGIVSMPPSIAPTFMQMDLSQVFEVTM 240

Query:   199 DNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALA-ISFVICKT 257
              +V+ A  F+ LF  +  +   A    G  +D E+N   +     TA +LA I+     T
Sbjct:   241 LSVVFAFLFVDLFDTSGTLVAVAQ--RGGFLD-ENNRLPRLNRALTADSLATIAGAALGT 297

Query:   258 AT---YLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLA---PAGDTLALVLMQVFFSV 311
             +T   Y+ +  G+  G   G+TA+VV L  +L    S LA   PA  T   +       +
Sbjct:   298 STTTSYIESTAGVSAGGRTGLTAVVVGLLFILALFVSPLAGMIPAYATAGTLFYVAILMM 357

Query:   312 VGASGSIW-NVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA-SNANVG 366
              G     W ++   AP + +  L+ +T  +A  + LG + +  +KLL    S+ N+G
Sbjct:   358 SGLVHVEWEDLTEAAPVVIVCILMPLTFSIATGIALGIISYAAIKLLTGRFSDLNIG 414


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      413       398   0.00097  117 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  205 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.56u 0.10s 33.66t   Elapsed:  00:00:02
  Total cpu time:  33.56u 0.10s 33.66t   Elapsed:  00:00:02
  Start:  Fri May 10 17:36:58 2013   End:  Fri May 10 17:37:00 2013

GO:0015211 "purine nucleoside transmembrane transporter activity" evidence=ISS

GO:0015860 "purine nucleoside transmembrane transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O31634	YJCL_BACSU	No assigned EC number	0.3078	0.8861	0.9242	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
pfam05684	379	pfam05684, DUF819, Protein of unknown function (DU	1e-111
COG5505	384	COG5505, COG5505, Predicted integral membrane prot	3e-44

>gnl|CDD|114410 pfam05684, DUF819, Protein of unknown function (DUF819)

 Score =  330 bits (848), Expect = e-111
 Identities = 162/382 (42%), Positives = 220/382 (57%), Gaps = 25/382 (6%)

Query: 51  TALLVTGAFGLWSE---KTKLGSMVSAALVSTLLGLAASNLGII--PYEAKAYAVFLEFL 105
             L  T A GLW E   K K  S+V AAL+  LL +  + +G+I    E+ AY V   FL
Sbjct: 1   GFLAATAALGLWLEEKTKWKFFSVVPAALLIYLLAMFFNTVGLIDSESESPAYDVVRNFL 60

Query: 106 LPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIAS 165
           LP +IPLLL R DLR+I++  G LL  FL+ SV+T +G ++AF L+    LG D+WKIA+
Sbjct: 61  LPAAIPLLLLRIDLRKIIKLGGKLLAIFLIASVSTVLGFILAFFLMKSF-LGPDTWKIAA 119

Query: 166 AFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLAS-------KIP 218
           A  GS+IGGS N VA+  AL V  SV +A +AADNVI A++F +LF L S       K  
Sbjct: 120 ALAGSWIGGSANMVAMQAALAVPASVFSAALAADNVIYAVWFAVLFALVSLKRFQDHKTK 179

Query: 219 PEASPANGTEVDKESNSED----KTPVLQTATALAISFVICKTATYLSNLF-----GIQG 269
            + S       D            + ++     + +SF I   A  L         GI G
Sbjct: 180 ADTSKLKADGNDAAKAVAYEKRNPSSLVDIIFLIGVSFAIVAVAMKLGGYLKNLLTGILG 239

Query: 270 GSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIF 329
           G+   VTA +V L     + F  L P  + +  VL+ VFF+V+G++  +W+++  APSIF
Sbjct: 240 GTWTVVTATIVGLLLAFTRFFE-LLPGSEEIGTVLLYVFFAVIGSTADLWSILT-APSIF 297

Query: 330 LFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGIL 389
           LF L+ + VHLA++LGLGKLF  DL LLL+ASNAN+GGPT+A  MAT KG  SL  PG+L
Sbjct: 298 LFGLIILAVHLAVLLGLGKLFRVDLFLLLLASNANIGGPTSAPVMATAKG-RSLAPPGVL 356

Query: 390 AGIFGISMATFLGLGFGTTVLK 411
            G  G ++ TF G+  G  + K
Sbjct: 357 MGTLGYAIGTFFGILMGVILSK 378

This family contains proteins of unknown function from archaeal, bacterial and plant species. Length = 379

>gnl|CDD|227792 COG5505, COG5505, Predicted integral membrane protein [Function unknown]

 Score =  158 bits (400), Expect = 3e-44
 Identities = 121/380 (31%), Positives = 180/380 (47%), Gaps = 27/380 (7%)

Query: 47  WGTWTALLVTGAFGLWSE-KTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFL 105
           +  W  L V  A  +  E + K  S V AA++     +  + +G+   E+  Y     +L
Sbjct: 6   FVLWGFLAVWAAVSIGLEQRFKWKSAVPAAVIIYAGAMFFTTVGLFSVESPVYDTVWNYL 65

Query: 106 LPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIAS 165
           LP  IPL+L + D+R+I +    LL  FL+ SV T +G ++A+ L  ++S   D WK   
Sbjct: 66  LPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAYPL--LKSFIGDLWKAGG 123

Query: 166 AFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTL---------ASK 216
              GSY GGS N  A+  AL V     +A +AAD V+ ++ F +L ++          +K
Sbjct: 124 MISGSYTGGSANMAAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTK 183

Query: 217 IPPEASPANGTEVDKESNSEDKTPV--LQTATALAISFVICKTATYLS-NLFGIQGGSLP 273
                  A+G E     +   + P+     A    IS  +   A  +S  L  I  G L 
Sbjct: 184 PDESKLKADGNEGASAESYWKRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLT 243

Query: 274 G-------VTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAP 326
           G       + +I  ++  L P  F  L P    L  VL+ +F  V+ AS +   +I TAP
Sbjct: 244 GLGTQTLVLVSITGLIIALTP--FERL-PGSQELGTVLLYLFVVVI-ASPADLRLIVTAP 299

Query: 327 SIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVP 386
            I LF  + +  HLA+    GKLF  DL+ +L+AS AN+GGPT+A  MA  K    LV P
Sbjct: 300 LIILFGFIILISHLAVSFAAGKLFRVDLEEILLASLANIGGPTSAPAMAIAKN-RELVAP 358

Query: 387 GILAGIFGISMATFLGLGFG 406
           G+L G  G  +  + G   G
Sbjct: 359 GVLMGTLGYLIGNYFGTFMG 378

Length = 384

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	100.0
COG5505	384	Predicted integral membrane protein [Function unkn	100.0
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	99.95
COG3493	438	CitS Na+/citrate symporter [Energy production and	99.92
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	99.82
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	98.6
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	98.13
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	98.04
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.95
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	97.82
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	97.8
COG2855	334	Predicted membrane protein [Function unknown]	97.76
TIGR00698	335	conserved hypothetical integral membrane protein.	97.64
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.43
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.33
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	97.2
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	97.06
PRK05326	562	potassium/proton antiporter; Reviewed	96.85
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	96.61
PRK10669	558	putative cation:proton antiport protein; Provision	96.32
PLN03159	832	cation/H(+) antiporter 15; Provisional	96.05
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	95.98
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	95.89
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	95.8
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	95.03
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.41
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	94.36
TIGR00698	335	conserved hypothetical integral membrane protein.	94.3
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	93.8
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	93.72
COG2855	334	Predicted membrane protein [Function unknown]	93.7
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	93.03
TIGR00841	286	bass bile acid transporter. Functionally character	92.1
COG3493	438	CitS Na+/citrate symporter [Energy production and	90.04
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	89.98
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	85.72
COG0679	311	Predicted permeases [General function prediction o	85.56
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	84.98
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	83.72
PRK04972	558	putative transporter; Provisional	83.64
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	82.21
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	81.27

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=100.00  E-value=2.6e-86  Score=673.71  Aligned_cols=358  Identities=43%  Similarity=0.702  Sum_probs=322.4

Q ss_pred             HHHHHHHHHHHH-Hhhcccc--cchhHHHHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 048244           51 TALLVTGAFGLW-SEKTKLG--SMVSAALVSTLLGLAASNLGII--PYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQS  125 (413)
Q Consensus        51 a~l~~~~a~~~~-~~k~~~~--~~l~~~vl~~l~~~~lsn~gli--p~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~  125 (413)
                      ++++.++++++| |||++|+  |++|++++||+++++++|+|++  |.++|+||.+|+|++|++|||+|+++|+||++|+
T Consensus         1 a~l~~~~a~~~~le~~~~~~~f~~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~   80 (378)
T PF05684_consen    1 AVLLGIAALGFWLEQKTKWGFFKYLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRL   80 (378)
T ss_pred             CHHHHHHHHHHHHhcchhhhhHhhcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence            468889999999 8999999  9999999999999999999999  8899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 048244          126 TGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAI  205 (413)
Q Consensus       126 ~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~  205 (413)
                      +||++.+|++|++||++|++++|++++ +.++||.||++||++|||||||+||+||+|++++|++.+++++++||+++++
T Consensus        81 g~~~l~~F~~~~~g~viG~~va~~l~~-~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~  159 (378)
T PF05684_consen   81 GGRLLLAFLIGAVGTVIGAVVAFLLFG-GFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMAL  159 (378)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999997 4479999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccc---CCCCCCCC----CC--Cccccc-cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc-----cCC
Q 048244          206 YFMILFTLASK---IPPEASPA----NG--TEVDKE-SNSEDKTPVLQTATALAISFVICKTATYLSNLFGI-----QGG  270 (413)
Q Consensus       206 ~~~~L~~l~~~---~~~~~~~~----~~--~~~~~~-~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~-----~~~  270 (413)
                      ||+++++++++   ++++.+..    ++  ++.+++ ++++++.+..|++..+++++.++.+++.++++++.     .+.
T Consensus       160 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~  239 (378)
T PF05684_consen  160 WFAFLLALPPFARKFDRWTKADTSSIEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSS  239 (378)
T ss_pred             HHHHHHHHhhhhHHhhhccCCCccccchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999872   33333211    11  111111 11222334489999999999999999999998843     456


Q ss_pred             chhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244          271 SLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLF  350 (413)
Q Consensus       271 ~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLf  350 (413)
                      .++++++.++.+++.+|+..++++++ +++|++++|+||++||+++|+.++++ +|.+++|+++++.+|++++++++|+|
T Consensus       240 ~~~il~~tt~~l~~~~~~~~~~l~g~-~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~  317 (378)
T PF05684_consen  240 TWLILTVTTLGLATSFPPFRKLLRGA-SELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLF  317 (378)
T ss_pred             HHHHHHHHHHHHHHhccchhhcCCch-HHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888999999999888887666 57999999999999999999999887 99999999999999999999999999


Q ss_pred             ccchhHHHHHhhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 048244          351 HFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL  413 (413)
Q Consensus       351 k~~l~~~~iAS~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~ll~~~  413 (413)
                      |+|++|++||||||||||+|||+||++|| |+|++||+++|++||++|||+|+.+++ ++|+|
T Consensus       318 k~~l~~~~vAS~AnIGGpaTA~a~A~a~~-~~Lv~pgvL~gvlGyaiGty~G~~va~-~l~~~  378 (378)
T PF05684_consen  318 KIDLFELLVASNANIGGPATAPAVAAAKG-PSLVPPGVLMGVLGYAIGTYLGLAVAQ-LLKML  378 (378)
T ss_pred             CCCHHHHHHHhhcccCCcchHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhC
Confidence            99999999999999999999999999999 999999999999999999999999999 57664

>COG5505 Predicted integral membrane protein [Function unknown]

Probab=100.00  E-value=5.3e-78  Score=581.20  Aligned_cols=358  Identities=31%  Similarity=0.505  Sum_probs=322.3

Q ss_pred             ChHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 048244           45 DHWGTWTALLVTGAFGLW-SEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIV  123 (413)
Q Consensus        45 ~~~~~~a~l~~~~a~~~~-~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~  123 (413)
                      |-|..|+++..+++..+| |||.||+.++|+++++|+.+|.++|+|+.|.+||+||.+|+|++|++||+||+|||+||+.
T Consensus         4 ngf~~~~fl~~~aa~~i~lE~~~kwk~~Vpa~v~iy~gamff~t~Glfs~~S~~y~~v~n~llpamI~lmLlqcd~Rki~   83 (384)
T COG5505           4 NGFVLWGFLAVWAAVSIGLEQRFKWKSAVPAAVIIYAGAMFFTTVGLFSVESPVYDTVWNYLLPAMIPLMLLQCDVRKIF   83 (384)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            349999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHH
Q 048244          124 QSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVIT  203 (413)
Q Consensus       124 k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~  203 (413)
                      |+|||++..|+++++++++|++++|.+++ ..++ |.||..||+.|||+|||+||+||++++++|++.+++++++|++++
T Consensus        84 Klg~rll~ifli~sv~~vlGfIl~yp~~k-sf~g-d~Wka~gmi~gSytGGSaNmAAmqaaLeVP~~~fsatlaaDtv~y  161 (384)
T COG5505          84 KLGRRLLFIFLISSVGTVLGFILAYPLLK-SFIG-DLWKAGGMISGSYTGGSANMAAMQAALEVPGEYFSATLAADTVMY  161 (384)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHh-hhcc-hHHhhhhheeeeeeCCcchHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996 3344 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc---cCCCCCCCC--------CCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc--c--
Q 048244          204 AIYFMILFTLAS---KIPPEASPA--------NGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGI--Q--  268 (413)
Q Consensus       204 ~~~~~~L~~l~~---~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~--~--  268 (413)
                      ++|+++++.+++   |++++++..        ++...+|+++++|+++..|.+..+++++.+.+++..+++.++.  +  
T Consensus       162 Sll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e~a~~e~ywKrkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl  241 (384)
T COG5505         162 SLLFFLLISIVPYKWKWRHYTKPDESKLKADGNEGASAESYWKRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGL  241 (384)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhhhhhhhhhhhcCCccHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence            999999999975   333333311        1222345566777899999999999999999999999988773  1  


Q ss_pred             ----CCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 048244          269 ----GGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIIL  344 (413)
Q Consensus       269 ----~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l  344 (413)
                          +.....+++++..+..+.|  ++|+++++ ++|++++|.|+++|+.++|++.+. ++|.+++++++++..|..+++
T Consensus       242 ~~~~gt~t~v~vsi~gLi~aLtP--f~~lpgs~-elgtv~lY~~v~vias~Ad~~~i~-taP~~i~~gf~il~~h~~v~f  317 (384)
T COG5505         242 LTGLGTQTLVLVSITGLIIALTP--FERLPGSQ-ELGTVLLYLFVVVIASPADLRLIV-TAPLIILFGFIILISHLAVSF  317 (384)
T ss_pred             ccccceeeehHHHHHHHHHHhCc--cccCCchh-hhhHHHHHHHHHHhccchhHHHHH-hhhHHHHHHHHHHHHHHHHHH
Confidence                2233445556565656565  99999986 599999999999999999999964 599999999999999999999


Q ss_pred             HHHHHhccchhHHHHHhhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244          345 GLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTV  409 (413)
Q Consensus       345 ~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~l  409 (413)
                      .++|+||.|++|+.+||+||||||+|||+||.||| |+|++||++||++||.+|||.|+.+|+++
T Consensus       318 ~~~KlF~~dL~~i~~AslAniGG~~sAp~~A~A~n-r~lv~~gvlmg~lG~~iGn~fG~~~g~il  381 (384)
T COG5505         318 AAGKLFRVDLEEILLASLANIGGPTSAPAMAIAKN-RELVAPGVLMGTLGYLIGNYFGTFMGNIL  381 (384)
T ss_pred             HHHHHHHhHHHHHHHHHHhccCCccchhHHHhhcC-chhcchHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999999998 99999999999999999999999999963

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=99.95  E-value=4.3e-25  Score=224.97  Aligned_cols=349  Identities=17%  Similarity=0.210  Sum_probs=289.6

Q ss_pred             CCChHHHHHHHHHHHHHHHH-Hhhccc-ccchh-HHHHHHHHHHHHhhCCCCCCC-----ChHHH--HHHHHHHHHHHHH
Q 048244           43 PNDHWGTWTALLVTGAFGLW-SEKTKL-GSMVS-AALVSTLLGLAASNLGIIPYE-----AKAYA--VFLEFLLPLSIPL  112 (413)
Q Consensus        43 ~~~~~~~~a~l~~~~a~~~~-~~k~~~-~~~l~-~~vl~~l~~~~lsn~glip~~-----s~~y~--~v~~~llPlaI~L  112 (413)
                      |+|..+-+++++..+.+..| .+|.|+ ++|+| ++++|++.+..+.++|++|++     +..++  .+.++++...|.-
T Consensus        27 p~~m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~G  106 (414)
T PF03390_consen   27 PTDMIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVG  106 (414)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHh
Confidence            68999999999999999655 999997 57698 679999999999999999985     23333  5778999999999


Q ss_pred             HHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccH--HHHHH----HhC
Q 048244          113 LLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISE----ALG  186 (413)
Q Consensus       113 lLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~----al~  186 (413)
                      ..|++|.|-++|..-|+++..+.|.++.++.+.+...+++     .+.++..-.++-+.+||+++-  +.++|    ++|
T Consensus       107 SILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G-----~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g  181 (414)
T PF03390_consen  107 SILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFG-----YSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALG  181 (414)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhC
Confidence            9999999999999999999999999988777777777764     345678888999999999987  55555    677


Q ss_pred             CCh-HHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCC----CCC-ccccccCCCCCCChHHHHHHHHHHHHHHH
Q 048244          187 VSP-SVLAAGVAADNVITAIYFMILFT----LASKIPPEASPA----NGT-EVDKESNSEDKTPVLQTATALAISFVICK  256 (413)
Q Consensus       187 ~~~-~~~aa~~aaDnv~~~~~~~~L~~----l~~~~~~~~~~~----~~~-~~~~~~~~~~~i~~~~~~~~lava~~i~~  256 (413)
                      .++ +.++..+.+ ..+.++.-++...    +.+|.|+++.+.    +++ +.+++++++++++..+++..+.++.....
T Consensus       182 ~~~~~~~s~~ipa-~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~  260 (414)
T PF03390_consen  182 QDAEEYFSQLIPA-LTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYI  260 (414)
T ss_pred             CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence            776 455555444 5555555555544    467888887743    112 22333445557888899999999999999


Q ss_pred             HHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccc-cchhHHHHHHHHHHHHHHhcc-cchHHHHhh-hhHHHHHHH
Q 048244          257 TATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLA-PAGDTLALVLMQVFFSVVGAS-GSIWNVINT-APSIFLFAL  333 (413)
Q Consensus       257 ~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~-~~~~~lg~~ll~iffavIGa~-~~l~~~i~~-ap~l~l~~~  333 (413)
                      ++..+++.++.+...+.++.+..+-.....|+.+++-. ..++.+...+.+.+++.+|.. .|+.++++. .|.+++.++
T Consensus       261 ~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~  340 (414)
T PF03390_consen  261 LGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVL  340 (414)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHH
Confidence            99999999888888888888888888999998876542 244678889999999999988 999998776 799999999


Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHH---hhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 048244          334 VQVTVHLAIILGLGKLFHFDLKLLLIA---SNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMA  398 (413)
Q Consensus       334 i~l~iH~~~~l~~gkLfk~~l~~~~iA---S~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiG  398 (413)
                      ..+....+.-+.+||++|+++-|.+|+   |++|.||..+-+++.+|+| .+|+|.+++.-++|+++=
T Consensus       341 ~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~R-M~LmpFAQIstRiGGAi~  407 (414)
T PF03390_consen  341 ATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANR-MELMPFAQISTRIGGAIM  407 (414)
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhh-cccccHHHHHHhhhhHHH
Confidence            999999999999999999999999988   8999999999999999997 999999999999999873

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=99.92  E-value=1.3e-22  Score=202.18  Aligned_cols=356  Identities=16%  Similarity=0.222  Sum_probs=282.6

Q ss_pred             CCChHHHHHHHHHHHHH-HHHHhhcccc-cchh-HHHHHHHHHHHHhhCCCCCCC-----ChHHH--HHHHHHHHHHHHH
Q 048244           43 PNDHWGTWTALLVTGAF-GLWSEKTKLG-SMVS-AALVSTLLGLAASNLGIIPYE-----AKAYA--VFLEFLLPLSIPL  112 (413)
Q Consensus        43 ~~~~~~~~a~l~~~~a~-~~~~~k~~~~-~~l~-~~vl~~l~~~~lsn~glip~~-----s~~y~--~v~~~llPlaI~L  112 (413)
                      |.|..+-+++++.++.+ ++..||.|+. |++| +++++++.+..+..+|++|.+     +..|+  .+.+++++..|.-
T Consensus        44 P~~mlg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~G  123 (438)
T COG3493          44 PSDMLGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVG  123 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHh
Confidence            67899999999988888 6669999985 9998 889999999999999999985     45665  6889999999999


Q ss_pred             HHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccH--HHHHH----HhC
Q 048244          113 LLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISE----ALG  186 (413)
Q Consensus       113 lLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~----al~  186 (413)
                      ..|.+|.|-++|..-|+++..+.|.++..+.+.+...+++.   +.  -...--++-+.+||+..-  +.++|    .+|
T Consensus       124 SILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~---~~--~d~~m~~vlPIM~GG~GaGavPLS~iYs~itg  198 (438)
T COG3493         124 SILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGL---SF--QDTMMYVVLPIMGGGMGAGAVPLSEIYSSITG  198 (438)
T ss_pred             hhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC---Ch--HHeeeeEEeeeccCCCCCCcccHHHHHHHHcC
Confidence            99999999999999999999999999988888887788752   21  124455777889998765  67777    457


Q ss_pred             CChH-HHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCC-----C-CccccccCCCCCCChHHHHHHHHHHHHHH
Q 048244          187 VSPS-VLAAGVAADNVITAIYFMILFT----LASKIPPEASPAN-----G-TEVDKESNSEDKTPVLQTATALAISFVIC  255 (413)
Q Consensus       187 ~~~~-~~aa~~aaDnv~~~~~~~~L~~----l~~~~~~~~~~~~-----~-~~~~~~~~~~~~i~~~~~~~~lava~~i~  255 (413)
                      .|++ .++..+.+ ..+.+++-++..+    +.+|.|.++.+.+     + ++.+||.+++.+++.++.+..+..+....
T Consensus       199 ~s~~~~~s~lipa-l~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~~ee~~~~~k~d~~~~g~G~llA~~lf  277 (438)
T COG3493         199 GSQEEYFSQLIPA-LTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEATEEELEKEGKLDLKLMGAGMLLACTLF  277 (438)
T ss_pred             CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchhhhhhhhccCccHHHHHHHHHHHHHHH
Confidence            7764 55554444 5555655555544    4567888877431     1 11222223334778889999999999889


Q ss_pred             HHHHHHHHhhcccCC-chhHHHHHHHHHHHhhhhhhhcccc-chhHHHHHHHHHHHHHHhcc-cchHHHHhh-hhHHHHH
Q 048244          256 KTATYLSNLFGIQGG-SLPGVTAIVVILATLLPKQFSYLAP-AGDTLALVLMQVFFSVVGAS-GSIWNVINT-APSIFLF  331 (413)
Q Consensus       256 ~~~~~la~~l~~~~~-~l~~itt~~vilat~~p~~~~~l~~-~~~~lg~~ll~iffavIGa~-~~l~~~i~~-ap~l~l~  331 (413)
                      .++..+.++++.++. .+.++.+..+-.+...|+.+++-+. -++.+.+-+.|.+++.+|.. +|+.++... ++.+++.
T Consensus       278 ~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii  357 (438)
T COG3493         278 MAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVII  357 (438)
T ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHH
Confidence            999999998744332 3666666667788888877654322 23578999999999999977 999998776 6899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHH---hhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 048244          332 ALVQVTVHLAIILGLGKLFHFDLKLLLIA---SNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGF  405 (413)
Q Consensus       332 ~~i~l~iH~~~~l~~gkLfk~~l~~~~iA---S~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v  405 (413)
                      ++.++......-+..+|++++++-|.+|.   |+||.||..+.++++++.| .+|+|.+++..++|.++=--++..+
T Consensus       358 ~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~R-M~LmpFAQiSsRLGGai~li~~~ll  433 (438)
T COG3493         358 ALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADR-MELMPFAQISSRLGGAITLIIASLL  433 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcch-hccccHHHHHhhcCchhhhHHHHHH
Confidence            99999999999999999999999998886   7999999999999999997 9999999999999999865555443

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=99.82  E-value=4.1e-18  Score=170.99  Aligned_cols=305  Identities=16%  Similarity=0.138  Sum_probs=228.6

Q ss_pred             HhhCCCCCCC-----ChHHH--HHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 048244           85 ASNLGIIPYE-----AKAYA--VFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLG  157 (413)
Q Consensus        85 lsn~glip~~-----s~~y~--~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg  157 (413)
                      +.++|++|++     +..++  .+.++++...|.-..|++|.|-++|..-|+++..++|.++.++.+.....+++     
T Consensus         3 lv~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G-----   77 (347)
T TIGR00783         3 LVFYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFG-----   77 (347)
T ss_pred             EEEeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence            4578899974     23333  57789999999999999999999999999999999999988888877777764     


Q ss_pred             cchHHHHHHhhhccccccccH--HHHHH----HhCCChH-HHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCC-
Q 048244          158 TDSWKIASAFMGSYIGGSINY--VAISE----ALGVSPS-VLAAGVAADNVITAIYFMILFT----LASKIPPEASPAN-  225 (413)
Q Consensus       158 ~~~wkiag~l~gsyiGGs~N~--vAv~~----al~~~~~-~~aa~~aaDnv~~~~~~~~L~~----l~~~~~~~~~~~~-  225 (413)
                      -+.+...-.++-+.+||+++-  +++++    .+|.+++ .++..+.+ ..+.++.-++...    +.+|+|+++.+.+ 
T Consensus        78 ~~~~~~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~-~~igni~AIi~agll~~lG~~~p~ltG~G~L  156 (347)
T TIGR00783        78 LGFDHSLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPA-VIIGNIFAIICAGLLSRIGKKRPKLNGHGEL  156 (347)
T ss_pred             CCHhHhhheeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCcCCCceE
Confidence            233456777888999999887  56665    5677764 55555444 5555555555544    4567888876331 


Q ss_pred             --C--Ccc-ccccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCchhHHHHHHHHHHHhhhhhhhcc-ccch
Q 048244          226 --G--TEV-DKESNS-EDKTPVLQTATALAISFVICKTATYLSNLFG-IQGGSLPGVTAIVVILATLLPKQFSYL-APAG  297 (413)
Q Consensus       226 --~--~~~-~~~~~~-~~~i~~~~~~~~lava~~i~~~~~~la~~l~-~~~~~l~~itt~~vilat~~p~~~~~l-~~~~  297 (413)
                        .  ++. ++++++ +.+++..+++..+.++.....++..++ .++ .+...+.++....+-.....|+..++- +..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~~-~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~  235 (347)
T TIGR00783       157 VRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLLK-SFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLS  235 (347)
T ss_pred             eecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence              1  111 111111 125677888988888888888887775 443 244445555555555666677665432 2233


Q ss_pred             hHHHHHHHHHHHHHHhcc-cchHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH---hhccCCCcchHH
Q 048244          298 DTLALVLMQVFFSVVGAS-GSIWNVINTA-PSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA---SNANVGGPTTAC  372 (413)
Q Consensus       298 ~~lg~~ll~iffavIGa~-~~l~~~i~~a-p~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA---S~AnIGGpaTA~  372 (413)
                      +.+-..+++..++.+|.. .|..++++.- |.+++.++..+....+..+++||++|+++-|.+|+   |++|.||..+.+
T Consensus       236 ~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDva  315 (347)
T TIGR00783       236 QFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVA  315 (347)
T ss_pred             HHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence            456667778888989976 8999987764 99999999999999999999999999999999987   899999999999


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHH
Q 048244          373 GMATTKGWGSLVVPGILAGIFGISM  397 (413)
Q Consensus       373 a~Aaa~~w~~Lv~pgvL~GvlGyai  397 (413)
                      ++.+++| .+|+|.+++..++|+++
T Consensus       316 vLsAa~R-M~LmpfAQIstRiGGAi  339 (347)
T TIGR00783       316 VLSASNR-MNLIPFAQISTRLGGAI  339 (347)
T ss_pred             eeehhhh-cccccHHHHHHHhhhHH
Confidence            9999997 99999999999999976

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=98.60  E-value=0.00016  Score=74.44  Aligned_cols=304  Identities=13%  Similarity=0.163  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHH-Hhhcccc--cchhHHHHHHHHHHHH----hhCCCCCC--CChHHHHHHHHHHHHHHHHHHHHhhH
Q 048244           49 TWTALLVTGAFGLW-SEKTKLG--SMVSAALVSTLLGLAA----SNLGIIPY--EAKAYAVFLEFLLPLSIPLLLFRADL  119 (413)
Q Consensus        49 ~~a~l~~~~a~~~~-~~k~~~~--~~l~~~vl~~l~~~~l----sn~glip~--~s~~y~~v~~~llPlaI~LlLl~~Dl  119 (413)
                      .++.....--++.| .+|.|+-  -++|.+++.=++++++    .+.+.++-  +...++.    ++=.--.-+-++.++
T Consensus         8 tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~----lm~~fF~~igL~~~~   83 (368)
T PF03616_consen    8 TLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDF----LMIIFFTTIGLGASL   83 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHH----HHHHHHHHHhhccch
Confidence            34444445556777 7777874  3466666555554443    44555443  3333332    222222234568898


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhh--ccccccccHHHHHHHh----CCChH-HH
Q 048244          120 RRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMG--SYIGGSINYVAISEAL----GVSPS-VL  192 (413)
Q Consensus       120 r~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~g--syiGGs~N~vAv~~al----~~~~~-~~  192 (413)
                      |++.|.+++...-...+.+-..+=..++..+-+.-.+.|    ..|.++|  ++.||=-+-.|.++.+    |.++. .+
T Consensus        84 ~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p----~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~v  159 (368)
T PF03616_consen   84 KLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDP----LFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSV  159 (368)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----hHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHH
Confidence            888776655554444444333333333332211001223    3566655  7999988888888654    44432 22


Q ss_pred             HHHHHHHHHHHHHHHH--HHHHhcccCCCCCCCCCCC------ccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 048244          193 AAGVAADNVITAIYFM--ILFTLASKIPPEASPANGT------EVDKESNSEDKTPVLQTATALAISFVICKTATYLSNL  264 (413)
Q Consensus       193 aa~~aaDnv~~~~~~~--~L~~l~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~  264 (413)
                      +.+.|.==++...-..  +.-.+.||.+...++++++      +.+++++++++++..+....+++=..++.++..++++
T Consensus       160 g~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~~i~i~~~~G~~i~~~  239 (368)
T PF03616_consen  160 GMAAATFGLVVGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLALILIAIGLGYIISAL  239 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222211111111110  1111234433211111111      1111222233555555555555555566677788777


Q ss_pred             hcccCCchhHHHHHHHHHHHhhh---hhh--hccccc-hhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHH-HH
Q 048244          265 FGIQGGSLPGVTAIVVILATLLP---KQF--SYLAPA-GDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQ-VT  337 (413)
Q Consensus       265 l~~~~~~l~~itt~~vilat~~p---~~~--~~l~~~-~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~-l~  337 (413)
                      +...+..+|. ..+..+.+-.+.   ++.  .++... -+.++...+.+|.+.-=++-++.++.+-+..+++...++ +.
T Consensus       240 l~~~~~~lP~-f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~  318 (368)
T PF03616_consen  240 LKKIGLTLPL-FVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTIL  318 (368)
T ss_pred             HHHcCcCCch-HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            6544444443 222233322222   122  223222 257888887777655547889999876654444443444 33


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHh
Q 048244          338 VHLAIILGLGKLFHFDLKLLLIAS  361 (413)
Q Consensus       338 iH~~~~l~~gkLfk~~l~~~~iAS  361 (413)
                      .-....+..-|+++=|+|...+++
T Consensus       319 ~~~f~~fv~fr~~gkdydaavm~~  342 (368)
T PF03616_consen  319 MVLFAYFVTFRVMGKDYDAAVMSA  342 (368)
T ss_pred             HHHHHHHHhhhhhCCChhHHHHhh
Confidence            444455677799999997777654

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=98.13  E-value=0.014  Score=60.74  Aligned_cols=305  Identities=18%  Similarity=0.145  Sum_probs=151.9

Q ss_pred             ChHHHHHHHHHHHHHHHH-Hhhcccc--cchhHHHHHHHHHH----HHhhCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 048244           45 DHWGTWTALLVTGAFGLW-SEKTKLG--SMVSAALVSTLLGL----AASNLGI--IPYEAKAYAVFLEFLLPLSIPLLLF  115 (413)
Q Consensus        45 ~~~~~~a~l~~~~a~~~~-~~k~~~~--~~l~~~vl~~l~~~----~lsn~gl--ip~~s~~y~~v~~~llPlaI~LlLl  115 (413)
                      |.+...++....-.++.| .+|.|+-  -.+|.+|+.=++++    ++-+.+.  ++.+++..+    .++-.--.-+-+
T Consensus         4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~----~lm~~fFatigL   79 (398)
T TIGR00210         4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRD----PLMLIFFTTIGL   79 (398)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHH----HHHHHHHHHhhh
Confidence            344445555556666777 7777763  33566655544432    2223222  334444443    332222223345


Q ss_pred             HhhHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHhcccccCcchHHHHHHhh--hccccccccHHHHHHHh---
Q 048244          116 RADLRRIVQSTGILLLAFLLGSVATT-----VGTLVAFLLVPMRSLGTDSWKIASAFM--GSYIGGSINYVAISEAL---  185 (413)
Q Consensus       116 ~~Dlr~i~k~~~~~L~~F~~gsvgtv-----iG~~va~~l~~~~~lg~~~wkiag~l~--gsyiGGs~N~vAv~~al---  185 (413)
                      +.++|+++|. +|.+..|+.-+....     +|..++. +++   +.|    .+|+++  -|..||=-.-.|+++.+   
T Consensus        80 ga~~~~l~~g-g~~l~~~~~~~~~l~~~Qn~vGv~la~-~~g---l~P----~~Gll~gsi~~~GGHGTAaA~g~~f~e~  150 (398)
T TIGR00210        80 SANFKSLLKG-GKPLLIFLATAVGFLVIQNAVGIGMAS-LLG---QAP----LMGLLAGSITLSGGHGTGAAWSPVFYDN  150 (398)
T ss_pred             cCChHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC---CCh----HHHHHhhCccCCCCCcHHHHHHHHHHHH
Confidence            7899997764 555555554443332     3333331 222   233    678875  68999998888888865   


Q ss_pred             -CCChH-HHHHHHHHHHHHHHHHHHHH--HHhcccCCCCCC-CCCCCcc--ccccCC-CCCCChHHHHHHHHHHHHHHHH
Q 048244          186 -GVSPS-VLAAGVAADNVITAIYFMIL--FTLASKIPPEAS-PANGTEV--DKESNS-EDKTPVLQTATALAISFVICKT  257 (413)
Q Consensus       186 -~~~~~-~~aa~~aaDnv~~~~~~~~L--~~l~~~~~~~~~-~~~~~~~--~~~~~~-~~~i~~~~~~~~lava~~i~~~  257 (413)
                       |.++. .++.+.|.==++...-...-  -++.||.+...+ +.++++.  +.++++ +++.+..+....+++-...+.+
T Consensus       151 ~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~iai~i  230 (398)
T TIGR00210       151 YGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETIALIAVCLLV  230 (398)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHHHHHHHHHHH
Confidence             45542 33332222111111111111  011233322111 1111111  111111 2234444444444444555666


Q ss_pred             HHHHHHhhcccCCchh---HHHHHHHHHHHhhhhhhh--cc-ccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHH
Q 048244          258 ATYLSNLFGIQGGSLP---GVTAIVVILATLLPKQFS--YL-APAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLF  331 (413)
Q Consensus       258 ~~~la~~l~~~~~~l~---~itt~~vilat~~p~~~~--~l-~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~  331 (413)
                      +..+.+.+...+..+|   ......+++=...+ +.+  ++ ...-+.++...+-+|.+.-=++-+++++.+.+..+++.
T Consensus       231 G~~i~~~l~~~~~~lP~fv~am~~giiirni~~-~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Pllii  309 (398)
T TIGR00210       231 GYELNDLVAKTALMLPTFVWCLFVGVILRNPLS-FKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALI  309 (398)
T ss_pred             HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHH-HhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            7777766543223333   22233333333222 221  22 12336788888888877665889999987777777777


Q ss_pred             HHHHHHHHHHHH-HHHHHHhccchhHHHHHhhcc
Q 048244          332 ALVQVTVHLAII-LGLGKLFHFDLKLLLIASNAN  364 (413)
Q Consensus       332 ~~i~l~iH~~~~-l~~gkLfk~~l~~~~iAS~An  364 (413)
                      ...++....++. +..-|.++=| .|-+|=|-..
T Consensus       310 l~~q~i~~~l~~~fv~fr~mg~~-ydaaV~~ag~  342 (398)
T TIGR00210       310 LLVQVMFMALYAIFVTFRLMGKD-YDAAVLCAGH  342 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHhccch-HHHHHHhccc
Confidence            777777777544 5666889888 4555533333

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=98.04  E-value=0.00025  Score=73.65  Aligned_cols=169  Identities=17%  Similarity=0.278  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhHHH---HHHHHHHHhhhhhhh-ccccchhHHHHHHHHHHHHHHhcccc
Q 048244          243 QTATALAISFVICKTATYLSNLFGI-QGGSLPGVT---AIVVILATLLPKQFS-YLAPAGDTLALVLMQVFFSVVGASGS  317 (413)
Q Consensus       243 ~~~~~lava~~i~~~~~~la~~l~~-~~~~l~~it---t~~vilat~~p~~~~-~l~~~~~~lg~~ll~iffavIGa~~~  317 (413)
                      |.-..++++.....+|+++-+..+. +...+|.--   .+..++....|.... ..+-. +.+-..+|.+||+++|..++
T Consensus         4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd-~~l~~~lm~~fFatigLga~   82 (398)
T TIGR00210         4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFD-FSLRDPLMLIFFTTIGLSAN   82 (398)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcC-hhHHHHHHHHHHHHhhhcCC
Confidence            3445666777777888888776653 334444311   111011222233221 12222 34667889999999999999


Q ss_pred             hHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHhccchhHHHH-HhhccCCCcchHHHHhhcc----CCCCchHHHHH
Q 048244          318 IWNVINTAPSIFLFALV---QVTVHLAIILGLGKLFHFDLKLLLI-ASNANVGGPTTACGMATTK----GWGSLVVPGIL  389 (413)
Q Consensus       318 l~~~i~~ap~l~l~~~i---~l~iH~~~~l~~gkLfk~~l~~~~i-AS~AnIGGpaTA~a~Aaa~----~w~~Lv~pgvL  389 (413)
                      ++.+-+.++.++.+..+   .....-++-..+++++++|+..=+. .|..=.||..||++++..+    ||++-...|+-
T Consensus        83 ~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla  162 (398)
T TIGR00210        83 FKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIA  162 (398)
T ss_pred             hHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHH
Confidence            99865545555444433   6666666777788999999888777 5999999999999998754    89999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Q 048244          390 AGIFGISMATFLGLGFGTTVLKH  412 (413)
Q Consensus       390 ~GvlGyaiGtylGi~v~~~ll~~  412 (413)
                      ++++|...|.-+|.-+++++.||
T Consensus       163 ~AT~GLv~g~liGgpi~~~lirk  185 (398)
T TIGR00210       163 CATFGLVFGGIIGGPVAKFLIIR  185 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999988775

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=97.95  E-value=0.0005  Score=70.73  Aligned_cols=168  Identities=23%  Similarity=0.349  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhHHH---HHHHHHHHhhhhhhhc--cccchhHHHHHHHHHHHHHHhccc
Q 048244          243 QTATALAISFVICKTATYLSNLFGI-QGGSLPGVT---AIVVILATLLPKQFSY--LAPAGDTLALVLMQVFFSVVGASG  316 (413)
Q Consensus       243 ~~~~~lava~~i~~~~~~la~~l~~-~~~~l~~it---t~~vilat~~p~~~~~--l~~~~~~lg~~ll~iffavIGa~~  316 (413)
                      |.-..++++.....+|+++-+..+. +.+.+|.--   .+..++.+ .......  ++-. ..+-..+|.+||+++|..+
T Consensus         4 ~~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~-~l~~~~~~~~~f~-~~l~~~lm~~fF~~igL~~   81 (368)
T PF03616_consen    4 DALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPL-ILGGFGGISISFD-TSLQDFLMIIFFTTIGLGA   81 (368)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHH-HHHhcCceEEEec-hhHHHHHHHHHHHHHhhcc
Confidence            4445666667777778887766554 233333311   11111111 1122222  2222 2477889999999999999


Q ss_pred             chHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhh----ccCCCCchHHHH
Q 048244          317 SIWNVINTAP---SIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMAT----TKGWGSLVVPGI  388 (413)
Q Consensus       317 ~l~~~i~~ap---~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aa----a~~w~~Lv~pgv  388 (413)
                      +.+..-+...   .+..++.......-++=+.++++++.|+..=.++ |..=.||+.||++++.    .+||++-...|+
T Consensus        82 ~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~  161 (368)
T PF03616_consen   82 SLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGM  161 (368)
T ss_pred             chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHH
Confidence            9888644333   3444444456666667778899999997766555 8899999999999985    459999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc
Q 048244          389 LAGIFGISMATFLGLGFGTTVLKH  412 (413)
Q Consensus       389 L~GvlGyaiGtylGi~v~~~ll~~  412 (413)
                      -.+++|-..|..+|.-+++++.||
T Consensus       162 a~AT~Glv~G~liGgpi~~~lirk  185 (368)
T PF03616_consen  162 AAATFGLVVGGLIGGPIANWLIRK  185 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999998886

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=97.82  E-value=0.021  Score=58.85  Aligned_cols=292  Identities=18%  Similarity=0.219  Sum_probs=151.2

Q ss_pred             HHHHHHH-Hhhccccc-------chhHHHHHHHHHHHHhhCCC-CCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 048244           56 TGAFGLW-SEKTKLGS-------MVSAALVSTLLGLAASNLGI-IPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQST  126 (413)
Q Consensus        56 ~~a~~~~-~~k~~~~~-------~l~~~vl~~l~~~~lsn~gl-ip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~  126 (413)
                      .-.+|-+ .||.|+-+       .+++.+..++...+....++ +..+.+..|.    ++-.--.-+=+++|+++.+|-|
T Consensus        17 llllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~----fmliFFttiglsa~~~~lkkgG   92 (404)
T COG0786          17 LLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDV----FMLIFFATIGLSASFKLLKKGG   92 (404)
T ss_pred             HHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccH----HHHHHHHHhccccchhHHHhcC
Confidence            3344555 77777742       24555556655555544433 1123333331    1111112233689999887665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhh--ccccccccHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 048244          127 GILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMG--SYIGGSINYVAISEALGVSPSVLAAGVAADNVITA  204 (413)
Q Consensus       127 ~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~g--syiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~  204 (413)
                      +++..-...+..=.+..=+++--+.+  .++-|-  ..|+++|  |..||=-|-+|.++.++-..    +-.+.|.-+.+
T Consensus        93 k~l~if~~~a~~l~~~Qn~igi~la~--~lgidp--l~gllagsIsl~GGHGtaAA~~~~f~~~G----~~~A~~va~A~  164 (404)
T COG0786          93 KKLAIFLATAAGLAVLQNFIGIGLAK--LLGLDP--LIGLLAGSISLVGGHGTAAAWGPTFEDLG----AEGATEVAMAS  164 (404)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HcCccH--HHHHHhcceeecCCCchHHHHHHHHHhcC----CcchHHHHHHH
Confidence            55444444444433444444444432  123232  5788886  67899999999998664331    11111111222


Q ss_pred             HHHHHHHHh------c----ccC--CCCCCCCC-CCcccc---ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048244          205 IYFMILFTL------A----SKI--PPEASPAN-GTEVDK---ESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQ  268 (413)
Q Consensus       205 ~~~~~L~~l------~----~~~--~~~~~~~~-~~~~~~---~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~~  268 (413)
                      .-+...+..      +    +|.  ++.+.+.+ ++..+.   .+.++++++...+...+++-.....++..+.++++..
T Consensus       165 ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~  244 (404)
T COG0786         165 ATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSL  244 (404)
T ss_pred             HHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222222211      1    122  11111111 111111   1222334444444444555555667788888888765


Q ss_pred             CCchhH---HHHHHHHHHHhhhhhhhccc---cchhHHHHHHHHHHHHHHhcccchHHHHhhh-hHHHHHHHHHHHHHHH
Q 048244          269 GGSLPG---VTAIVVILATLLPKQFSYLA---PAGDTLALVLMQVFFSVVGASGSIWNVINTA-PSIFLFALVQVTVHLA  341 (413)
Q Consensus       269 ~~~l~~---itt~~vilat~~p~~~~~l~---~~~~~lg~~ll~iffavIGa~~~l~~~i~~a-p~l~l~~~i~l~iH~~  341 (413)
                      +..+|.   .....+++-.... ..++-+   ...+.+|+.-+-+|.+.-=+|-.+.++.+-+ |.+.++..-.+...+.
T Consensus       245 ~~~lP~fv~~lfvgiIvrni~~-~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL~vQ~i~m~lf  323 (404)
T COG0786         245 GLALPLFVMCLFVGVILRNILD-LLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVILAVQTIVMALF  323 (404)
T ss_pred             cccccHHHHHHHHHHHHHhHHH-HhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            555544   4445555544442 222211   2236788888888877655778888875444 5555555444555555


Q ss_pred             HHHHHHHHhccchhHHHHH
Q 048244          342 IILGLGKLFHFDLKLLLIA  360 (413)
Q Consensus       342 ~~l~~gkLfk~~l~~~~iA  360 (413)
                      ..+..-|+++=|+++..++
T Consensus       324 a~fvtfr~mG~~YdAaV~~  342 (404)
T COG0786         324 AIFVTFRLMGKNYDAAVLA  342 (404)
T ss_pred             HHHHHHHHhCcchhHHHHh
Confidence            6677889999999998885

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=97.80  E-value=0.0024  Score=64.13  Aligned_cols=158  Identities=19%  Similarity=0.140  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHHhh-CCCCCC-CChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Q 048244           53 LLVTGAFGLWSEKTK-LGSMVSAALVSTLLGLAASN-LGIIPY-EAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGIL  129 (413)
Q Consensus        53 l~~~~a~~~~~~k~~-~~~~l~~~vl~~l~~~~lsn-~glip~-~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~  129 (413)
                      .+.++.++.+.++.+ ....+++.++++++|++++| .--.|. -.|--++..+++++..|.++=++.++.++.+.|.+.
T Consensus         6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~   85 (305)
T PF03601_consen    6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKG   85 (305)
T ss_pred             HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccH
Confidence            344555566666655 45789999999999999999 333333 235556777899999999999999999999999976


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 048244          130 LLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFM  208 (413)
Q Consensus       130 L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~  208 (413)
                      +..-.+....+..-+. ++...++   +.++.-  .=.=+|+=|-|..=-.|++...+.+||..+++++.=+++..+-+.
T Consensus        86 ~~~~~~~v~~~~~~~~~lg~r~~~---l~~~~~--~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~  160 (305)
T PF03601_consen   86 LLIIIIVVILTFLLTYWLGRRLFG---LDRKLA--ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMF  160 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC---CCHHHH--HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHH
Confidence            5554444443333222 2224443   223221  122356788888888999999999999888888886777777766


Q ss_pred             HHHHhcc
Q 048244          209 ILFTLAS  215 (413)
Q Consensus       209 ~L~~l~~  215 (413)
                      ++-.+.+
T Consensus       161 ~~P~l~~  167 (305)
T PF03601_consen  161 LYPLLGH  167 (305)
T ss_pred             HHHHHHH
Confidence            6655554

; GO: 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=97.76  E-value=0.0085  Score=60.68  Aligned_cols=264  Identities=19%  Similarity=0.170  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHhhcccccc--hhHHHHHHHHHHHHhhCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHH
Q 048244           54 LVTGAFGLWSEKTKLGSM--VSAALVSTLLGLAASNLGIIPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILL  130 (413)
Q Consensus        54 ~~~~a~~~~~~k~~~~~~--l~~~vl~~l~~~~lsn~glip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L  130 (413)
                      ..++.+.++..|..+...  +|+.++++++|+++.++.-.|.+ ++--++-..++++..|.|+=++.++.++...|.+.+
T Consensus        17 ~~ia~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v   96 (334)
T COG2855          17 ALIAGLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGV   96 (334)
T ss_pred             HHHHHHHHHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHH
Confidence            334555666788777544  66999999999999977766643 455568899999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCcchHHHH-HHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Q 048244          131 LAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIA-SAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMI  209 (413)
Q Consensus       131 ~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkia-g~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~  209 (413)
                      ..-.....++.+-+.....++++   .   ||.+ =.=+|+=|=|..--+|++...+-+|+..+.+++.=+++..+-+..
T Consensus        97 ~~~~~~l~~t~~~~~~lg~~lgl---d---~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~ll  170 (334)
T COG2855          97 LIIAITLSSTFLFAYFLGKLLGL---D---KKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLL  170 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC---C---HHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHH
Confidence            77777666666655544445532   1   3322 123467777777788888899999999999999888888877766


Q ss_pred             HHHhcccC--CCCCC--C--CCCCcccc-----ccCCCC--CC-ChHHHHHHHHHHHHHHHHHHHHHHhhcc---cC---
Q 048244          210 LFTLASKI--PPEAS--P--ANGTEVDK-----ESNSED--KT-PVLQTATALAISFVICKTATYLSNLFGI---QG---  269 (413)
Q Consensus       210 L~~l~~~~--~~~~~--~--~~~~~~~~-----~~~~~~--~i-~~~~~~~~lava~~i~~~~~~la~~l~~---~~---  269 (413)
                      .-.+.+..  +++.-  .  ...+|...     +..+++  +. +..-+.-.+.++-....++-...+.-..   .+   
T Consensus       171 yP~l~~~l~l~~~~~GifaG~TvHeVaqVvaAg~~~~~~a~~~A~ivKl~RV~mLaPv~l~ls~~~~~~~~~~~~~~~~~  250 (334)
T COG2855         171 YPLLYPLLGLSPEQFGIFAGSTVHEVAQVVAAGGAIGPEAANTATIVKLIRVLMLAPVLLILSLILRRQSGAGSGSKGLK  250 (334)
T ss_pred             HHHHHHHhCCCcchheeeechhHHHHHHHHHhcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Confidence            65554321  11111  0  00011100     011110  10 1111222333444444445555432211   11   


Q ss_pred             --CchhHHHHHHHHHHHhh---hhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhh
Q 048244          270 --GSLPGVTAIVVILATLL---PKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAP  326 (413)
Q Consensus       270 --~~l~~itt~~vilat~~---p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap  326 (413)
                        -.|.++-++.+...+.+   |..+-+   ...++.++++-.=++.+|.+.|++++.+.++
T Consensus       251 ~~iPwFi~gFl~~a~lnS~~~iP~~~~~---~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~  309 (334)
T COG2855         251 ITIPWFILGFLLVALLNSLGLIPAEVVS---ALVTLSTFLLAMAMAALGLTTHIKALKKAGG  309 (334)
T ss_pred             CCCCHHHHHHHHHHHHHhcccCcHHHHH---HHHHHHHHHHHHHHHHhccccCHHHHHHcCc
Confidence              12333444444444433   222111   1136788888888999999999999988765

>TIGR00698 conserved hypothetical integral membrane protein

Probab=97.64  E-value=0.012  Score=59.90  Aligned_cols=162  Identities=18%  Similarity=0.118  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHhhccc-cc-chhHHHHHHHHHHHHhhCC--CCCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 048244           49 TWTALLVTGAFGLWSEKTKL-GS-MVSAALVSTLLGLAASNLG--IIPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIV  123 (413)
Q Consensus        49 ~~a~l~~~~a~~~~~~k~~~-~~-~l~~~vl~~l~~~~lsn~g--lip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~  123 (413)
                      -+.+.+.++.++.+..+++. .+ -+|+.++++++|++++|.-  -.|.. .|=-++..+.++-..|.|+=++.+++++.
T Consensus         6 G~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~   85 (335)
T TIGR00698         6 GLLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIA   85 (335)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHH
Confidence            34455556666777666654 33 3899999999999999942  12222 33346788999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHh--hhccccccccHHHHHHHhCCChHHHHHHHHHHH
Q 048244          124 QSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAF--MGSYIGGSINYVAISEALGVSPSVLAAGVAADN  200 (413)
Q Consensus       124 k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l--~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDn  200 (413)
                      +.|.+.+..-....++++..+. ++-..++   +.++    .+.+  +|+=|=|..=-.|++.+.+.+||..+++++.=+
T Consensus        86 ~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~---l~~~----~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~  158 (335)
T TIGR00698        86 DVGPNEIVADTLILTSTFFLTVFLGSSRLK---LDKQ----MSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVV  158 (335)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChh----HHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHH
Confidence            9999877665555555544322 2223333   2222    2333  345555677778889999999998888888867


Q ss_pred             HHHHHHHHHHHHhcccC
Q 048244          201 VITAIYFMILFTLASKI  217 (413)
Q Consensus       201 v~~~~~~~~L~~l~~~~  217 (413)
                      ++..+-+.++-.+.+..
T Consensus       159 lfgt~am~l~P~l~~~l  175 (335)
T TIGR00698       159 IFGTTGIFLYPSIYHYA  175 (335)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777666665555433

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.43  E-value=0.29  Score=53.60  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH-HHhhccCCCcchHHHHhhc
Q 048244          299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLL-IASNANVGGPTTACGMATT  377 (413)
Q Consensus       299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~-iAS~AnIGGpaTA~a~Aaa  377 (413)
                      .+..+++=+||..+|++.|+..+.+.-+..+...+..+.+-.+..++.+|.+|.+..+.. ++..=|-+|.-+-.....+
T Consensus       265 pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a  344 (601)
T PRK03659        265 PFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAA  344 (601)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHH
Confidence            445678889999999999998876554455556667788888999999999999987755 4433344454443333434


Q ss_pred             cCCCCchHH
Q 048244          378 KGWGSLVVP  386 (413)
Q Consensus       378 ~~w~~Lv~p  386 (413)
                      .+ ..++.+
T Consensus       345 ~~-~g~i~~  352 (601)
T PRK03659        345 SS-QRLLQG  352 (601)
T ss_pred             Hh-CCCCCH
Confidence            43 444444

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.33  E-value=0.38  Score=52.90  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 048244          299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA  360 (413)
Q Consensus       299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA  360 (413)
                      .+..+++=+||..+|++.|+..+.+.-+..+.+.+..+++-.+..+..+|++|.+..+....
T Consensus       268 pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~  329 (621)
T PRK03562        268 PFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWF  329 (621)
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHH
Confidence            34567788999999999999886554444455556677888899999999999997766554

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=97.20  E-value=0.012  Score=60.77  Aligned_cols=170  Identities=22%  Similarity=0.249  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhHHHHHHHHHHHhhhhhhh----ccccchhHHHHHHHHHHHHHHhccc
Q 048244          242 LQTATALAISFVICKTATYLSNLFGI-QGGSLPGVTAIVVILATLLPKQFS----YLAPAGDTLALVLMQVFFSVVGASG  316 (413)
Q Consensus       242 ~~~~~~lava~~i~~~~~~la~~l~~-~~~~l~~itt~~vilat~~p~~~~----~l~~~~~~lg~~ll~iffavIGa~~  316 (413)
                      .|.-..+..+.....+|+++-+..+. ++..+|.--+=-.+.+-..+...+    +++-. ..+=+.+|.+||+++|.++
T Consensus         5 ~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd-~~l~~~fmliFFttiglsa   83 (404)
T COG0786           5 LNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFD-TSLQDVFMLIFFATIGLSA   83 (404)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCC-cccccHHHHHHHHHhcccc
Confidence            34555666677777788888876654 233333311111112222221111    11111 1356788999999999999


Q ss_pred             chHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhhcc---CCCCchHHHHH
Q 048244          317 SIWNVINTAP---SIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMATTK---GWGSLVVPGIL  389 (413)
Q Consensus       317 ~l~~~i~~ap---~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aaa~---~w~~Lv~pgvL  389 (413)
                      |+....+...   .++.++.....++-.+-...+|++++|+-.=+.+ |..=.||-.||++.+..+   |-++-.-.|+-
T Consensus        84 ~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~va~A  163 (404)
T COG0786          84 SFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEVAMA  163 (404)
T ss_pred             chhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCcchHHHHHH
Confidence            9999755443   4455566667777777788999999999888888 999999999999988753   55677889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Q 048244          390 AGIFGISMATFLGLGFGTTVLKH  412 (413)
Q Consensus       390 ~GvlGyaiGtylGi~v~~~ll~~  412 (413)
                      ++++|-..|--+|.-++.++.||
T Consensus       164 ~ATfGlv~GgliGgpva~~li~k  186 (404)
T COG0786         164 SATFGLVAGGLIGGPVARWLIKK  186 (404)
T ss_pred             HHHHHHHHhHhcCcHHHHHHHHh
Confidence            99999999999999999998865

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=97.06  E-value=0.51  Score=49.12  Aligned_cols=316  Identities=16%  Similarity=0.120  Sum_probs=163.8

Q ss_pred             ChHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhh--CCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Q 048244           45 DHWGTWTALLVTGAFGLW-SEKTKLGSMVSAALVSTLLGLAASN--LGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRR  121 (413)
Q Consensus        45 ~~~~~~a~l~~~~a~~~~-~~k~~~~~~l~~~vl~~l~~~~lsn--~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~  121 (413)
                      +......+++..+.+.-+ .+|.    .+|+++--++.|+++.+  .+.++.+++.-+...+.-+=+.+++.=++.|+++
T Consensus         6 ~~l~~~~iiL~~a~i~~~l~~rl----~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~   81 (397)
T COG0475           6 LILLQLLILLLVAVILGPLFKRL----GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER   81 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc----CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence            344455555555555434 7774    46777777788888888  4445556677788999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHH----HhcccccCcchHHHHHH-hhhccccccccHHHHHH--HhCCCh-HHHH
Q 048244          122 IVQSTGILLLAFLLGSVATTVGTLVAFL----LVPMRSLGTDSWKIASA-FMGSYIGGSINYVAISE--ALGVSP-SVLA  193 (413)
Q Consensus       122 i~k~~~~~L~~F~~gsvgtviG~~va~~----l~~~~~lg~~~wkiag~-l~gsyiGGs~N~vAv~~--al~~~~-~~~a  193 (413)
                      ++|..++.  ++..+.++...-...+..    .++   ++.+..-..|+ ++.|=+|  +..--+.|  .++.+. +..-
T Consensus        82 l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g---~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~l  154 (397)
T COG0475          82 LKKVGRSV--GLGVAQVGLTAPFLLGLLLLLGILG---LSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLIL  154 (397)
T ss_pred             HHHhchhh--hhhHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHHH
Confidence            99999995  555555544444333321    122   22222222222 2222221  11111112  112222 2333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCC-C----C-----------CCcc-cc--ccCCCCCCChHHHHHHHHHHHHH
Q 048244          194 AGVAADNVITAIYFMILFTLASKIPPEASP-A----N-----------GTEV-DK--ESNSEDKTPVLQTATALAISFVI  254 (413)
Q Consensus       194 a~~aaDnv~~~~~~~~L~~l~~~~~~~~~~-~----~-----------~~~~-~~--~~~~~~~i~~~~~~~~lava~~i  254 (413)
                      .....|.+...+.+.+...+.+..+..... .    .           .... +.  ...++.+.+-......+.+.+..
T Consensus       155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~  234 (397)
T COG0475         155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGA  234 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            445556666666666665554211100000 0    0           0000 00  00000000011112222222221


Q ss_pred             HHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHH-HHHHHHHHHHhcccchHHHHhhhhHHHHHHH
Q 048244          255 CKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLAL-VLMQVFFSVVGASGSIWNVINTAPSIFLFAL  333 (413)
Q Consensus       255 ~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~-~ll~iffavIGa~~~l~~~i~~ap~l~l~~~  333 (413)
                      .    ++++..+.+  ...--+...+.++....+ -++++..=+.++. +++=+||..+|++.|+..+.+.-+..+....
T Consensus       235 a----~l~e~~gls--~ilGAFlaGl~ls~~~~~-~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~  307 (397)
T COG0475         235 A----YLAELLGLS--MILGAFLAGLLLSESEYR-KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVA  307 (397)
T ss_pred             H----HHHHHhChh--HHHHHHHHHHHhcccccc-hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHH
Confidence            1    122221100  011111122222221111 0234332256788 9999999999999999997655555577777


Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHHHHhhcc
Q 048244          334 VQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTK  378 (413)
Q Consensus       334 i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aaa~  378 (413)
                      +.+..-.+.....+|++|.+..+..-....-.++...+-++++.-
T Consensus       308 ~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~  352 (397)
T COG0475         308 LAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIA  352 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence            788888888999999999987776666666666666666655544

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.85  E-value=0.33  Score=52.59  Aligned_cols=296  Identities=15%  Similarity=0.133  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHhhCCC--CCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHH
Q 048244           46 HWGTWTALLVTGAFG-LWSEKTKLGSMVSAALVSTLLGLAASNLGI--IPYE-AKAYAVFLEFLLPLSIPLLLFRADLRR  121 (413)
Q Consensus        46 ~~~~~a~l~~~~a~~-~~~~k~~~~~~l~~~vl~~l~~~~lsn~gl--ip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~  121 (413)
                      .+...++++..+.+. ...+|.    .+|.++.-++.|+++...++  ++.+ .+..+.+.+..++..++..=++.|.|+
T Consensus         7 ~ll~~~~ll~l~~~~~~l~~r~----~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~   82 (562)
T PRK05326          7 LLLIGALLLLLSILASRLSSRL----GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS   82 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH
Confidence            344555555555553 336664    46777777888888887543  5543 345567777777777777777899999


Q ss_pred             HHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccH--HHHHHHhC--CChHHHHHH-
Q 048244          122 IVQSTGILLLAFLLGSV-ATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISEALG--VSPSVLAAG-  195 (413)
Q Consensus       122 i~k~~~~~L~~F~~gsv-gtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~al~--~~~~~~aa~-  195 (413)
                      ++|..++.+..-..|.+ .+++.+..++++++.      .|. .+.+.|+-++-+.=-  .++=+..+  .+++.-... 
T Consensus        83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~-~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~  155 (562)
T PRK05326         83 FRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWL-EGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLE  155 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHH-HHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhh
Confidence            99988886655555544 444445566666642      243 346666666655322  22223445  554322111 


Q ss_pred             --HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHH-------------
Q 048244          196 --VAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATY-------------  260 (413)
Q Consensus       196 --~aaDnv~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~-------------  260 (413)
                        -..|..++.+.+.++..+............   .        ..-.......+.++..+.....+             
T Consensus       156 ~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~  224 (562)
T PRK05326        156 IESGSNDPMAVFLTITLIELITGGETGLSWGF---L--------LLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLY  224 (562)
T ss_pred             hhhhcccHHHHHHHHHHHHHHhCCCCcchHHH---H--------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHH
Confidence              123334443333333333211000000000   0        00000111111111111111111             


Q ss_pred             -------------HHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhH
Q 048244          261 -------------LSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPS  327 (413)
Q Consensus       261 -------------la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~  327 (413)
                                   +++.++  .+.+.......+.+.+.-++.-++++...+.+..++.-+||..+|+..|..++.+..+.
T Consensus       225 ~i~~l~~~l~~~~~a~~lg--~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~  302 (562)
T PRK05326        225 PILVLAGALLIFALTAALG--GSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALP  302 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                         122221  11222222222222221111111222222456666666789999999998886544333


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhccchhHHHHHhhccC
Q 048244          328 IFLF-ALVQVTVHLAIILGLGKLFHFDLKLLLIASNANV  365 (413)
Q Consensus       328 l~l~-~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnI  365 (413)
                      .+++ .++.++.-.+..+...+.+|++..|-..-|-++.
T Consensus       303 ~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~g~  341 (562)
T PRK05326        303 ALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWVGL  341 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeeecc
Confidence            3332 2334455566667777889999999988887643

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=96.61  E-value=0.96  Score=45.75  Aligned_cols=234  Identities=18%  Similarity=0.142  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 048244          129 LLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFM  208 (413)
Q Consensus       129 ~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~  208 (413)
                      ....+.+.++.+++-..+..+++. | ..  .|...-++.++.-||-..+++++|..|.|....+..-..=.+.-..-..
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~l~-r-~~--~~d~~TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP  128 (318)
T PF05145_consen   53 WWPPMLLLLVVTLLLSLVGAWLLR-R-IS--GLDRATAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVP  128 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-H-Hc--CCChhHHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHH
Confidence            344455555555555555555542 2 11  1335577899999999999999999999999888887776666655555


Q ss_pred             HHHHhcccCCCCCCCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhh
Q 048244          209 ILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPK  288 (413)
Q Consensus       209 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~  288 (413)
                      ++.......+..    ..++.  .+ ...+.+..+....+.++    .++-++.+.+..+...+ .-..+...+.+.+..
T Consensus       129 ~i~~~~~~~~~~----~~~~~--~~-~~~~~~~~~l~~l~~~~----~~g~~l~~~l~iPa~~l-lGpml~~a~~~~~~~  196 (318)
T PF05145_consen  129 FIASLLGGGNSA----ASEPG--PH-AVPLMSWLWLALLALAA----LAGGLLARRLRIPAPWL-LGPMLVSAILNLFGG  196 (318)
T ss_pred             HHHHHhhhcccc----cCCcc--cc-cCCCCCHHHHHHHHHHH----HHHHHHHHHhCCCcHHH-HHHHHHHHHHHHHhC
Confidence            555433211000    00000  00 00113334444443333    33455555554433222 211112222222211


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHhcccc---hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccC
Q 048244          289 QFSYLAPAGDTLALVLMQVFFSVVGASGS---IWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANV  365 (413)
Q Consensus       289 ~~~~l~~~~~~lg~~ll~iffavIGa~~~---l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnI  365 (413)
                      .--.++   +.+-..-..+.=..||..-+   +++.-+..|..++.....+....++-+++.|+.++|+.++.+|+.  =
T Consensus       197 ~~~~~P---~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La~a--P  271 (318)
T PF05145_consen  197 PSFSLP---PWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLATA--P  271 (318)
T ss_pred             CCCCCC---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhC--C
Confidence            111221   11111111122455665543   444444567777778888888889999999999999999999974  5


Q ss_pred             CCcchHHHHhhccCCCCch
Q 048244          366 GGPTTACGMATTKGWGSLV  384 (413)
Q Consensus       366 GGpaTA~a~Aaa~~w~~Lv  384 (413)
                      ||-+.-..+|.+.| -|..
T Consensus       272 GGl~eM~l~A~~l~-~d~~  289 (318)
T PF05145_consen  272 GGLAEMALIALALG-ADVA  289 (318)
T ss_pred             ccHHHHHHHHHHcC-CChH
Confidence            89999999999887 5533

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.32  E-value=2.1  Score=46.31  Aligned_cols=89  Identities=15%  Similarity=0.010  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh-hccCCCcchHHHHhhcc
Q 048244          300 LALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIAS-NANVGGPTTACGMATTK  378 (413)
Q Consensus       300 lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS-~AnIGGpaTA~a~Aaa~  378 (413)
                      +..+++=+||+.+|++.|+..+.+..+..+.+.++.++.-.+..+..+|.+|.|.++....+ .-|-.|.-+--....++
T Consensus       277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~  356 (558)
T PRK10669        277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGM  356 (558)
T ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHH
Confidence            45667889999999999999876544444555566677788888899999999988776663 22333443333333444


Q ss_pred             CCCCchHHHHH
Q 048244          379 GWGSLVVPGIL  389 (413)
Q Consensus       379 ~w~~Lv~pgvL  389 (413)
                      + ..++.+-..
T Consensus       357 ~-~gii~~~~~  366 (558)
T PRK10669        357 A-LNLLPQAGQ  366 (558)
T ss_pred             h-CCCCCHHHH
Confidence            3 444444433

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=96.05  E-value=3.8  Score=46.82  Aligned_cols=59  Identities=8%  Similarity=0.247  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHhcccchHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 048244          301 ALVLMQVFFSVVGASGSIWNVINTAPS---IFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA  360 (413)
Q Consensus       301 g~~ll~iffavIGa~~~l~~~i~~ap~---l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA  360 (413)
                      ..+|+=+||+.+|+..|+..+ .+...   .+++.++.++.-.+..++.+|++|++..+....
T Consensus       324 ~~lflPlFFv~vGl~idl~~l-~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~l  385 (832)
T PLN03159        324 SGLLLPLFFAISGLKTNVTKI-QGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITL  385 (832)
T ss_pred             HHHHHHHHHHHhhheeeHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            457778899999999999875 44322   222233334566778889999999998876553

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=95.98  E-value=0.85  Score=44.37  Aligned_cols=145  Identities=15%  Similarity=0.075  Sum_probs=84.2

Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHhhC--CCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Q 048244           60 GLWSEKTKLGSMVSAALVSTLLGLAASNL--GIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGS  137 (413)
Q Consensus        60 ~~~~~k~~~~~~l~~~vl~~l~~~~lsn~--glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gs  137 (413)
                      +...||+    ++|.++.-++.|+++.+.  |.+|.+ +..+.+.+.-+...++..=++.|+|+++|..++.+..-..+.
T Consensus         8 ~~l~~~l----~lP~~v~~il~GillGp~~lg~i~~~-~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~   82 (273)
T TIGR00932         8 VPLSRRL----GIPSVLGYLLAGVLIGPSGLGLISNV-EGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQV   82 (273)
T ss_pred             HHHHHHh----CCCHHHHHHHHHHHhCcccccCCCCh-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            3446664    567777778888888854  556633 455666777777777777778999999999988777766665


Q ss_pred             HHH-HHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCC---Ch-HHHHHHHHHHHHHHHHHHHHHHH
Q 048244          138 VAT-TVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGV---SP-SVLAAGVAADNVITAIYFMILFT  212 (413)
Q Consensus       138 vgt-viG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~---~~-~~~aa~~aaDnv~~~~~~~~L~~  212 (413)
                      +.+ ++-+....+.++..  -++.+-.+.+++.|-.+-..   .+-+.++.   +. +..-.....|.+.+.+.+.+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~--~~~~~~lg~~ls~Ts~~v~~---~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~  157 (273)
T TIGR00932        83 LVPGVLLGLLLGHLLGLA--LGAAVVIGIILALSSTAVVV---QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPL  157 (273)
T ss_pred             HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhHHHHHH---HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544 33233233344311  13455556666655332221   12223333   22 23333444677777666666655


Q ss_pred             hc
Q 048244          213 LA  214 (413)
Q Consensus       213 l~  214 (413)
                      ..
T Consensus       158 ~~  159 (273)
T TIGR00932       158 LA  159 (273)
T ss_pred             Hh
Confidence            43

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=95.89  E-value=0.14  Score=52.45  Aligned_cols=108  Identities=19%  Similarity=0.126  Sum_probs=87.1

Q ss_pred             chhHHHHHHHHHHHHhhCCCCCCC-----ChHHHHHHHHHHHHHHH-HHHHHhhHHHHHHhh-hHHHHHHHHHHHHHHHH
Q 048244           71 MVSAALVSTLLGLAASNLGIIPYE-----AKAYAVFLEFLLPLSIP-LLLFRADLRRIVQST-GILLLAFLLGSVATTVG  143 (413)
Q Consensus        71 ~l~~~vl~~l~~~~lsn~glip~~-----s~~y~~v~~~llPlaI~-LlLl~~Dlr~i~k~~-~~~L~~F~~gsvgtviG  143 (413)
                      .+++.+++++++.++..+|++|.+     ...|+++...+.+..++ +=+-..|++++.+.- .+.+..++.+.++.+++
T Consensus       203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~  282 (347)
T TIGR00783       203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG  282 (347)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence            578999999999999999999984     45777777777776555 344558999999866 89999999999999999


Q ss_pred             HHHHHHHhcccccCcchHHHHHHhhhccccccccHHHH
Q 048244          144 TLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAI  181 (413)
Q Consensus       144 ~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv  181 (413)
                      +.+..+++++   -|-.-.+.+.+|-+-+||+-|..-+
T Consensus       283 s~lvGKllG~---YPiE~aItagLC~~~~GGtGDvavL  317 (347)
T TIGR00783       283 GAFLGKLMGM---YPVESAITAGLCNSGMGGTGDVAVL  317 (347)
T ss_pred             HHHHHHHhCC---ChHHHHHHHhhhccCCCCCCceeee
Confidence            9888888753   3444557788999999999997533

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=95.80  E-value=2.7  Score=43.18  Aligned_cols=304  Identities=17%  Similarity=0.151  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHHHH-Hhhccc--ccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 048244           48 GTWTALLVTGAFGLW-SEKTKL--GSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQ  124 (413)
Q Consensus        48 ~~~a~l~~~~a~~~~-~~k~~~--~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k  124 (413)
                      -.|.+.+..++++=| .++..+  +-.+|++.++..+....-+-==+|   +.-..+-...+=..|=..+-..++..+  
T Consensus         9 ~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P---~~l~~~~q~ilG~~ig~~~t~s~l~~l--   83 (352)
T COG3180           9 LQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP---RGLFKAGQVILGIMIGASLTPSVLDTL--   83 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCC---hHHHHHHHHHHHHHHhhhcCHHHHHHH--
Confidence            456666666655333 555444  455664554444333221111122   222222222233333333333333333  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 048244          125 STGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITA  204 (413)
Q Consensus       125 ~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~  204 (413)
                        .+..+.|++-++.|+....+..++++ | .+  .|...-++-|+-=||-.-|..++|.+|.+-...+.+-..-.++-.
T Consensus        84 --~~~w~~~~~v~~~tl~~s~l~g~ll~-r-~~--~~~~~Ta~~gs~PGgas~m~~iA~d~gAd~~~VAl~Q~lRvl~Vv  157 (352)
T COG3180          84 --KSNWPIVLVVLLLTLLSSILLGWLLK-R-FS--ILPGNTAFLGSSPGGASAMVSIAQDYGADLRLVALMQYLRVLFVV  157 (352)
T ss_pred             --HHcccHHHHHHHHHHHHHHHHHHHHH-H-hc--CCCcchhhHhcCCchHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence              34455566666666655555555543 2 22  122345677888999999999999999999999888777555444


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCccccccCCCCCCChHHH---HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHH
Q 048244          205 IYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQT---ATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVI  281 (413)
Q Consensus       205 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vi  281 (413)
                      .-..+..   +.... |+.. .     +.+++.+.++.|.   .....++..    +-.+.+.+..+...+..-..++.+
T Consensus       158 l~vplv~---~~~~~-~~a~-~-----~~~~~i~~~~~~~~~~~~l~~~~~~----~g~l~~~lr~Pa~~ll~~l~l~a~  223 (352)
T COG3180         158 LLAPLVS---RLFVG-DGAN-G-----SGTPEIWLPPVDWLILLLLILAALL----GGLLGKLLRFPAPTLLGPLLLGAI  223 (352)
T ss_pred             HHHHHHH---HHhcC-CCCC-C-----CCCccccCchhhHHHHHHHHHHHHH----HHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3332222   22221 2211 1     0111112222222   222333333    333444443333333332222222


Q ss_pred             HHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 048244          282 LATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWN---VINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLL  358 (413)
Q Consensus       282 lat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~---~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~  358 (413)
                      .-......+ +++..-..++..+   .-+.||..-|-..   .-+..|..++..+..+.+....-.+++|+.++|+.+..
T Consensus       224 v~~~~~~~~-~lP~wl~~va~~~---iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~  299 (352)
T COG3180         224 VHFGGGITI-QLPAWLLAVAQAL---IGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY  299 (352)
T ss_pred             hhcccceee-eCCHHHHHHHHHH---HHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            111110001 2222212233322   2577887755444   34446888888888999999999999999999999999


Q ss_pred             HHhhccCCCcchHHHHhhccCCCCc
Q 048244          359 IASNANVGGPTTACGMATTKGWGSL  383 (413)
Q Consensus       359 iAS~AnIGGpaTA~a~Aaa~~w~~L  383 (413)
                      +|  ..=||-.+-+++|.+.| -|-
T Consensus       300 La--~sPGGl~~ma~~A~~l~-ad~  321 (352)
T COG3180         300 LA--TSPGGLDTMAAIAAALG-ADP  321 (352)
T ss_pred             HH--cCCCcHHHHHHHHHHcC-CCh
Confidence            97  34699999999999998 443

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=95.03  E-value=0.3  Score=51.06  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=87.2

Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCC-----ChHHHHHHHHHHHHHHHHHHHH-hhHHHHHH-hhhHHHHH
Q 048244           60 GLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYE-----AKAYAVFLEFLLPLSIPLLLFR-ADLRRIVQ-STGILLLA  132 (413)
Q Consensus        60 ~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~-----s~~y~~v~~~llPlaI~LlLl~-~Dlr~i~k-~~~~~L~~  132 (413)
                      +...+|.-   .+++..+.+++.+++.-+|++|.+     .+.|+++.+++.|..+.-.=.. .|++++.+ .++..+..
T Consensus       262 G~ll~~~i---~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~  338 (414)
T PF03390_consen  262 GVLLSKLI---GIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVI  338 (414)
T ss_pred             HHHHHHhc---CCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHH
Confidence            44444443   788999999999999999999984     5789999999888777777666 99999886 45556666


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHH
Q 048244          133 FLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAIS  182 (413)
Q Consensus       133 F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~  182 (413)
                      -+...++.++|+.+..++++   +-|-.-.+.+.+|-+-+|||-|..-++
T Consensus       339 ~~~~Vl~~~~~a~~vG~l~g---~YPvEsAItaGLC~an~GGtGDvAVLs  385 (414)
T PF03390_consen  339 VLATVLGAVIGAFLVGKLVG---FYPVESAITAGLCMANMGGTGDVAVLS  385 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHhC---CChHHHHHHhhhcccCCCCCCcchhee
Confidence            66666666666666666664   235445678889999999999984433

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.41  E-value=0.64  Score=46.87  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHhccchhH-HHHHhhccCCCcchHHHHhh
Q 048244          299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLG-KLFHFDLKL-LLIASNANVGGPTTACGMAT  376 (413)
Q Consensus       299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~-~~iAS~AnIGGpaTA~a~Aa  376 (413)
                      .....++..=.+..|++-++.++.+.++.-++...+.+..-..+...++ |+||+|.+. .++++-..|.|.+.+.+++.
T Consensus        56 ~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~  135 (305)
T PF03601_consen   56 FSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAP  135 (305)
T ss_pred             HHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcc
Confidence            3345677777888899999999988888667777777777777778888 999999875 56778889999999998888


Q ss_pred             ccC
Q 048244          377 TKG  379 (413)
Q Consensus       377 a~~  379 (413)
                      ..+
T Consensus       136 ~i~  138 (305)
T PF03601_consen  136 VIK  138 (305)
T ss_pred             ccc
Confidence            643

; GO: 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=94.36  E-value=2.2  Score=43.15  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhH-HHHH--hhccCCCcchHHHHhhcc
Q 048244          304 LMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKL-LLIA--SNANVGGPTTACGMATTK  378 (413)
Q Consensus       304 ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~-~~iA--S~AnIGGpaTA~a~Aaa~  378 (413)
                      .+-++-...|+.-|+.++++..+.-++.+++++.+-..+...++|++|.|.+. .+++  +-.+|.||+-.++....+
T Consensus       197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~  274 (312)
T PRK12460        197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL  274 (312)
T ss_pred             eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH
Confidence            55556778899999999988888888899999999999999999999988654 4455  344566665554444444

>TIGR00698 conserved hypothetical integral membrane protein

Probab=94.30  E-value=0.44  Score=48.69  Aligned_cols=81  Identities=17%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             cchhHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 048244           70 SMVSAALVSTLLGLAASNLGIIPYEA-KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAF  148 (413)
Q Consensus        70 ~~l~~~vl~~l~~~~lsn~glip~~s-~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~  148 (413)
                      ..+|--++-|+...++++++.+|++. +.-+.+.++++-+++.-+=++.|+|+++|.|+|.+...++..+-..+++..-.
T Consensus       249 ~~~P~FvlgFl~~~~l~S~~~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l~~~~~~l~  328 (335)
T TIGR00698       249 ITIPWFAVLFIGVAIFNSFDLLPGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGYLWLVGGGFVLN  328 (335)
T ss_pred             CCCChHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999753 34457889999999999999999999999999999888888776666665444


Q ss_pred             HH
Q 048244          149 LL  150 (413)
Q Consensus       149 ~l  150 (413)
                      .+
T Consensus       329 ~~  330 (335)
T TIGR00698       329 YL  330 (335)
T ss_pred             HH
Confidence            43

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=93.80  E-value=0.0029  Score=64.18  Aligned_cols=289  Identities=12%  Similarity=0.104  Sum_probs=37.1

Q ss_pred             HhhcccccchhHHHHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q 048244           63 SEKTKLGSMVSAALVSTLLGLAASNLGII--PYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVAT  140 (413)
Q Consensus        63 ~~k~~~~~~l~~~vl~~l~~~~lsn~gli--p~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgt  140 (413)
                      .||.+    +|.++.-++.|+++.+.+.-  +++.+.++.+.+..++..++..=++.|.|+++|..++.+..-..+.+.+
T Consensus        15 ~~r~~----iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~   90 (380)
T PF00999_consen   15 FRRLG----IPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLP   90 (380)
T ss_dssp             -------------------------------------S-SSHHHHS--SSHHHHTTGGGG--------------------
T ss_pred             HHHhC----CCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeeh
Confidence            55555    78888888899999988665  4333566777888888888888889999999999888666666655544


Q ss_pred             HHH-HHHHH-HHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048244          141 TVG-TLVAF-LLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSP---SVLAAGVAADNVITAIYFMILFTLAS  215 (413)
Q Consensus       141 viG-~~va~-~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~---~~~aa~~aaDnv~~~~~~~~L~~l~~  215 (413)
                      .+. +...+ .++..+.-..+.--.+..++.+-.+-..+...  |.-..++   +..-.....|++++.+.+.++....+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~--~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~  168 (380)
T PF00999_consen   91 FILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLK--ELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQ  168 (380)
T ss_dssp             -----------------------TTHHHHTT--HHHHHHHH---HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------
T ss_pred             hhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhh--hhhcccccccchhhhhchhhccchhhhhhhhhhhhc
Confidence            333 33332 21110100112222333444444333333221  2223332   22223333444444433333333220


Q ss_pred             cCCCCCCCC-CC----------------CccccccCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHH
Q 048244          216 KIPPEASPA-NG----------------TEVDKESNSE-DKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTA  277 (413)
Q Consensus       216 ~~~~~~~~~-~~----------------~~~~~~~~~~-~~i~~~~~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt  277 (413)
                      .....+... -.                ........++ ++.+..+....+++.+..+..++.+    +.  +.......
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~----g~--s~~l~af~  242 (380)
T PF00999_consen  169 ASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEIL----GL--SGILGAFI  242 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccccccc----cc--cccceeee
Confidence            000000000 00                0000000000 0111122333444444444444433    21  12222333


Q ss_pred             HHHHHHHhhhhhhhccccchhHHH-HHHHHHHHHHHhcccchHHHH--hhhhHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q 048244          278 IVVILATLLPKQFSYLAPAGDTLA-LVLMQVFFSVVGASGSIWNVI--NTAPSIFL-FALVQVTVHLAIILGLGKLFHFD  353 (413)
Q Consensus       278 ~~vilat~~p~~~~~l~~~~~~lg-~~ll~iffavIGa~~~l~~~i--~~ap~l~l-~~~i~l~iH~~~~l~~gkLfk~~  353 (413)
                      ..+.+.  -++.-++++..-+.+. .++.-+||..+|++.|.+.+.  .+.+...+ .....+.++.+......|..|.|
T Consensus       243 ~Gl~~~--~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  320 (380)
T PF00999_consen  243 AGLILS--NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIP  320 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eehccc--cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccc
Confidence            333333  1222222322223455 788888999999999988864  23333333 33344578999999999999999


Q ss_pred             hhHHHHHhhccC
Q 048244          354 LKLLLIASNANV  365 (413)
Q Consensus       354 l~~~~iAS~AnI  365 (413)
                      .++-..-+-.-.
T Consensus       321 ~~~~~~~~~~~~  332 (380)
T PF00999_consen  321 WKEALFIGLGML  332 (380)
T ss_dssp             --HHHHTTTTSS
T ss_pred             cchhHHHHHhhc
Confidence            888777654333

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=93.72  E-value=0.75  Score=46.48  Aligned_cols=144  Identities=24%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHH
Q 048244           60 GLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVA  139 (413)
Q Consensus        60 ~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvg  139 (413)
                      ..+..+.++...++ .++.+++|+++.|  +.|.-.+..+--.++.+|+.++++=++.|+.++.+.|.+-+..   +.+-
T Consensus       155 a~gLA~ip~~~lv~-lilpILiGmilGN--ld~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL---~v~v  228 (312)
T PRK12460        155 AAGLANIPIMALVA-ALLPLVLGMILGN--LDPDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILL---GVLV  228 (312)
T ss_pred             HHHHhcCChHHHHH-HHHHHHHHHHHhc--cchhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHH---HHHH
Confidence            33466677766655 9999999999999  3332223333334458999999999999999999999775443   3333


Q ss_pred             HHHHHHHHHHHhcccccCcchHHHHHHhhhccccccc-cHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244          140 TTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSI-NYVAISE---ALGVSPSVLAAGVAADNVITAIYFMILFTL  213 (413)
Q Consensus       140 tviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~-N~vAv~~---al~~~~~~~aa~~aaDnv~~~~~~~~L~~l  213 (413)
                      +++.....+++-  |.++.|  +-++.+.+|--|=++ .-.|+++   .+..-.+.-.+-+++-.+++++-..++-..
T Consensus       229 v~~t~~~~~~i~--rllg~~--~~~g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~  302 (312)
T PRK12460        229 TIVTGFFNIFAD--RLVGGT--GIAGAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSW  302 (312)
T ss_pred             HHHHHHHHHHHH--HHhCCC--hhHHHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445543  223322  234555555433221 1123333   222221222222455566777766666554

>COG2855 Predicted membrane protein [Function unknown]

Probab=93.70  E-value=0.6  Score=47.57  Aligned_cols=78  Identities=27%  Similarity=0.340  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHHHHhhCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 048244           69 GSMVSAALVSTLLGLAASNLGIIPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLV  146 (413)
Q Consensus        69 ~~~l~~~vl~~l~~~~lsn~glip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~v  146 (413)
                      ++.+|--++.++.-+.+++++.+|++ .+.-+...++++-.++.-+=++.|+|++.|.|+|.+..=+++.+..++++..
T Consensus       250 ~~~iPwFi~gFl~~a~lnS~~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l~  328 (334)
T COG2855         250 KITIPWFILGFLLVALLNSLGLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGLA  328 (334)
T ss_pred             CCCCCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999987 4556778889999999999999999999999999888777777766665543

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=93.03  E-value=0.89  Score=42.01  Aligned_cols=104  Identities=18%  Similarity=0.277  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHhhccCCCcchHHH
Q 048244          298 DTLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLGK-LFHFDLKLLLIASNANVGGPTTACG  373 (413)
Q Consensus       298 ~~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~gk-Lfk~~l~~~~iAS~AnIGGpaTA~a  373 (413)
                      +.+.++.+.+|.+.+|.+  .++.+-+++ ...+++.++++..+..++.+.++| ++|+|..+.   .-.--|+-|+.|+
T Consensus        53 ~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~---~G~~aGa~T~tp~  129 (169)
T PF06826_consen   53 SFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIA---AGILAGALTSTPA  129 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHccccCcHH
Confidence            567778888899999966  445554554 578888999999999999999998 999996543   3344588888999


Q ss_pred             HhhccCC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 048244          374 MATTKGW-GSLVVPGILAGIFGISMATFLGLGFGT  407 (413)
Q Consensus       374 ~Aaa~~w-~~Lv~pgvL~GvlGyaiGtylGi~v~~  407 (413)
                      ++++.+- ++.-.|.   =.+||++.-..|...-.
T Consensus       130 L~~A~~~~~~~~~~~---~~vgYa~~Yp~g~i~~i  161 (169)
T PF06826_consen  130 LAAAQEAISDSGIPA---IAVGYAVTYPFGVIGVI  161 (169)
T ss_pred             HHHHHHhhhcCCCch---hhhhHHHHHHHHHHHHH
Confidence            9998765 3433343   23566666666655433

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00841 bass bile acid transporter

Probab=92.10  E-value=13  Score=36.74  Aligned_cols=260  Identities=14%  Similarity=0.157  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHH----hhHHHH---HHhhhHHHHHHHHHHHHHHHHHH-HHHHHhccccc-CcchHHHHHHhhh
Q 048244           99 AVFLEFLLPLSIPLLLFR----ADLRRI---VQSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSL-GTDSWKIASAFMG  169 (413)
Q Consensus        99 ~~v~~~llPlaI~LlLl~----~Dlr~i---~k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~l-g~~~wkiag~l~g  169 (413)
                      +.+.++.+|. ++++++.    .+.+++   .|+-+..+..++.    -.+-.+ +++.+.  +.+ .++.+.....+.+
T Consensus         4 ~~~~~~~~~~-l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~----~~vi~Plla~~l~--~~~~l~~~~~~glvL~~   76 (286)
T TIGR00841         4 TNLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLA----QYGIMPLTGFLLA--KVFKLPPELAVGVLIVG   76 (286)
T ss_pred             hhHHHHHHHH-HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHH----HHHHHHHHHHHHH--HHhCCCHHHHHHHHhee
Confidence            3456788887 6666664    344444   4333333333332    222222 222221  111 2445555555555


Q ss_pred             ccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccccCCCCCCChHHHHHHHH
Q 048244          170 SYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALA  249 (413)
Q Consensus       170 syiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~la  249 (413)
                      .-=+|... .-.++..|-+.+.-+..++.+++.+.+-+.+.+.+-.....      +        ++-+++..++...+.
T Consensus        77 ~~P~~~~s-~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~------~--------~~~~v~~~~i~~~~~  141 (286)
T TIGR00841        77 CCPGGTAS-NVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWV------D--------GTLVVPYLGIGLSLV  141 (286)
T ss_pred             eCCCchHH-HHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc------C--------CCceecHHHHHHHHH
Confidence            55555444 45888889988888888888888888877776655321000      0        001233322222211


Q ss_pred             HHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHH
Q 048244          250 ISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIF  329 (413)
Q Consensus       250 va~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~  329 (413)
                      +=..=..+|..+..                     ..|+.-++++.. +.++...+.+...++ ...+...+.++.+...
T Consensus       142 ~v~vPl~lG~~~r~---------------------~~p~~~~~~~~~-~~~s~~~l~liv~~~-~~~~~~~i~~~~~~~~  198 (286)
T TIGR00841       142 AVLIPVSIGMLVKH---------------------KLPQIAKIILKV-GLISVFLLSVIIAVV-GGINVENLATIGPLLL  198 (286)
T ss_pred             HHHHHHHHHHHHHH---------------------HhHHHHHHHHhC-chHHHHHHHHHHHHH-HHhhHHHHHHhhHHHH
Confidence            00000111111111                     123222222221 234444433222222 2233333333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHH----hhccCCCcchHHHHhhc-cCCCCchHHHHHHHHHHHHHHHHHHHH
Q 048244          330 LFALVQVTVHLAIILGLGKLFHFDLKLLLIA----SNANVGGPTTACGMATT-KGWGSLVVPGILAGIFGISMATFLGLG  404 (413)
Q Consensus       330 l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA----S~AnIGGpaTA~a~Aaa-~~w~~Lv~pgvL~GvlGyaiGtylGi~  404 (413)
                      +.+++...+-..+-...+|++|.|.++....    ++=|.+   .|.++|.. ++ ++...|....+++.+..+..++..
T Consensus       199 ~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~---lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~  274 (286)
T TIGR00841       199 LVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ---LCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALL  274 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH---HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555567889999998554433    333444   45555554 56 777888888888887777776655


Q ss_pred             HHH
Q 048244          405 FGT  407 (413)
Q Consensus       405 v~~  407 (413)
                      ...
T Consensus       275 ~~~  277 (286)
T TIGR00841       275 FLI  277 (286)
T ss_pred             HHH
Confidence            443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=90.04  E-value=8.9  Score=39.95  Aligned_cols=147  Identities=15%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             HHHHHhhhhccccCCCChHHHHHHHHHHHHH--HHH-HhhcccccchhHHH-HHHHHHHHHhhCCCCCCC-----ChHHH
Q 048244           29 VVMVRSQLSNPIISPNDHWGTWTALLVTGAF--GLW-SEKTKLGSMVSAAL-VSTLLGLAASNLGIIPYE-----AKAYA   99 (413)
Q Consensus        29 ~~~~~~~~~~~li~~~~~~~~~a~l~~~~a~--~~~-~~k~~~~~~l~~~v-l~~l~~~~lsn~glip~~-----s~~y~   99 (413)
                      ..+++.++ .+=...|-..---..+++...+  +-. ++.+.    +|+++ +-+++.+++...|++|.+     .+.|+
T Consensus       248 ~~~~~ee~-~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~----~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~  322 (438)
T COG3493         248 KEATEEEL-EKEGKLDLKLMGAGMLLACTLFMAGGILGKFIG----LPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQ  322 (438)
T ss_pred             cchhhhhh-hhccCccHHHHHHHHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            33455554 3223333333333444444444  222 33331    34444 888899999999999985     46888


Q ss_pred             HHHHHHH-HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCcchHHHHHHhhhccccccc
Q 048244          100 VFLEFLL-PLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMR--SLGTDSWKIASAFMGSYIGGSI  176 (413)
Q Consensus       100 ~v~~~ll-PlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~--~lg~~~wkiag~l~gsyiGGs~  176 (413)
                      ++++.+. |++.-+=+.-.|++++.+.-   -..+.+=++++++|...+.++.+ +  .+-|-.-.+.+-+|=+-.||+-
T Consensus       323 F~sk~~t~~Lm~giGv~ytdl~ev~~al---t~~~vii~~~vVl~~i~~~~f~g-rl~~~YPVEaAI~aglC~a~~GGtG  398 (438)
T COG3493         323 FFSKNLTWPLMAGIGVAYTDLNEVAAAL---TWQNVIIALSVVLGAILGGAFVG-RLMGFYPVEAAITAGLCMANMGGTG  398 (438)
T ss_pred             HHHHhhHHHHHHhhhhccccHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHH-HHhcCCchHHHHHHhHHhcCCCCCC
Confidence            7776655 44444445558999987632   23455555555555555555443 1  1335344455557778999999


Q ss_pred             cHHHHHHH
Q 048244          177 NYVAISEA  184 (413)
Q Consensus       177 N~vAv~~a  184 (413)
                      |..-++.+
T Consensus       399 DvaVLsAa  406 (438)
T COG3493         399 DVAVLSAA  406 (438)
T ss_pred             chHHhhhc
Confidence            87655543

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=89.98  E-value=3.2  Score=45.33  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH-HHhccchhHHHHHhhccCCCcchHHHH
Q 048244          299 TLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLG-KLFHFDLKLLLIASNANVGGPTTACGM  374 (413)
Q Consensus       299 ~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~~~iAS~AnIGGpaTA~a~  374 (413)
                      .+..+.+-+|++++|.+  .++.+-+++ +-.+++.++++..+..++.+.++ |+||+|+..   ++-+--|+-|+.|++
T Consensus       448 ~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~aG~~t~t~~l  524 (562)
T TIGR03802       448 LLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPAL---LLGALAGARTATPAL  524 (562)
T ss_pred             HHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHhhccCCCcHHH
Confidence            46667777899999966  345554555 67788888999888888888888 799999763   334445888888888


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244          375 ATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTV  409 (413)
Q Consensus       375 Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~l  409 (413)
                      +.+.+-.+--.|.+=. ...|.+||.+=+.+++++
T Consensus       525 ~~a~~~~~~~~~~~gY-a~~Yp~~~i~~il~~~~i  558 (562)
T TIGR03802       525 GAVLERAGSSVPALGY-TITYALGNVLLTLLGPLI  558 (562)
T ss_pred             HHHHHhcCCCCcccch-HhHHHHHHHHHHHHHHHH
Confidence            8876422111232111 123455555556667643

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=85.72  E-value=43  Score=33.89  Aligned_cols=153  Identities=19%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             ChHHHHHHHHHHHHHHHH-Hhhccc--ccchhHHHHHHHHHHHHhhCCCCCCCChHHH-HHHHHHHHHHHHHHHHHhhHH
Q 048244           45 DHWGTWTALLVTGAFGLW-SEKTKL--GSMVSAALVSTLLGLAASNLGIIPYEAKAYA-VFLEFLLPLSIPLLLFRADLR  120 (413)
Q Consensus        45 ~~~~~~a~l~~~~a~~~~-~~k~~~--~~~l~~~vl~~l~~~~lsn~glip~~s~~y~-~v~~~llPlaI~LlLl~~Dlr  120 (413)
                      ..|.....++..+..+-| .+|.|.  +..+|+.+.    +.+++..+..+.+-|.+- ..-..++=..|=.-.=+.++|
T Consensus       152 ~~~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~----~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~  227 (318)
T PF05145_consen  152 MSWLWLALLALAALAGGLLARRLRIPAPWLLGPMLV----SAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLR  227 (318)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH----HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHH
Confidence            345555666666666666 776655  455666554    444444455444444332 222222223332222233334


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHH
Q 048244          121 RIVQSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAAD  199 (413)
Q Consensus       121 ~i~k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaD  199 (413)
                          +-+|.+..-+..++..+..+. .++.+-.   +.+  +...-++-++==||=..|.++++.+|.+....++.-..=
T Consensus       228 ----~~~~~~~~~l~~~~~~l~~~~~~a~~l~~---~~~--~~~~t~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~R  298 (318)
T PF05145_consen  228 ----ELRRLLPPALLSTLLLLALCALFAWLLSR---LTG--IDFLTALLATAPGGLAEMALIALALGADVAFVAAHQVVR  298 (318)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHC--CCHHHHHHHhCCccHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                444444444444443333333 3333321   111  225677888888999999999999999998888887775


Q ss_pred             HHHHHHHHHHH
Q 048244          200 NVITAIYFMIL  210 (413)
Q Consensus       200 nv~~~~~~~~L  210 (413)
                      .+....-...+
T Consensus       299 l~~v~~~~p~~  309 (318)
T PF05145_consen  299 LLFVLLLAPFI  309 (318)
T ss_pred             HHHHHHHHHHH
Confidence            55544444333

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG0679 Predicted permeases [General function prediction only]

Probab=85.56  E-value=42  Score=33.63  Aligned_cols=285  Identities=20%  Similarity=0.194  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048244           72 VSAALVSTLLGLAASNLGIIPYEA--KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL  149 (413)
Q Consensus        72 l~~~vl~~l~~~~lsn~glip~~s--~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~  149 (413)
                      +-+..+.+++|.++...|.++.++  ..-+.+..+.+|..++-.+-+.|.++. ++-+-....+....+.-..+..+..+
T Consensus         9 vlpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (311)
T COG0679           9 VLPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAFFLLALIGRF   87 (311)
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447788999999999999999875  577889999999999999999998887 33333333333333333333333333


Q ss_pred             HhcccccCcchHHHHHHhhhccccccccHH--HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 048244          150 LVPMRSLGTDSWKIASAFMGSYIGGSINYV--AISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGT  227 (413)
Q Consensus       150 l~~~~~lg~~~wkiag~l~gsyiGGs~N~v--Av~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~l~~~~~~~~~~~~~~  227 (413)
                      .++    .+..|..  .+......+..++.  ++.... ..++-++++...|.+....-+........+....   .+ .
T Consensus        88 ~~~----~~~~~~~--~~~~~~~~~N~g~lg~pi~~~~-~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~---~~-~  156 (311)
T COG0679          88 LFK----LDKRETV--IFALASAFPNIGFLGLPVALSL-FGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG---TN-K  156 (311)
T ss_pred             Hhc----cchhhHH--HHHHHHHhcccchhhHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ch-h
Confidence            332    1222322  23333333444443  344432 2234455544444433322222222221110000   00 0


Q ss_pred             ccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH
Q 048244          228 EVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQV  307 (413)
Q Consensus       228 ~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~i  307 (413)
                      .....-++--+-|+   ..+..+++...        ..+   ..+|-      .+.    +..+.+.++...+       
T Consensus       157 ~~~~~~~~~~~nP~---i~a~i~g~~~~--------~~~---i~lP~------~~~----~~~~~l~~a~~pl-------  205 (311)
T COG0679         157 SLLSVLKKLLTNPL---IIALILGLLLN--------LLG---ISLPA------PLD----TAVDLLASAASPL-------  205 (311)
T ss_pred             HHHHHHHHHHhCcH---HHHHHHHHHHH--------HcC---CCCcH------HHH----HHHHHHHHhhhhH-------
Confidence            00000000001111   11121222111        001   01111      000    1122222221122       


Q ss_pred             HHHHHhcccchHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhhc-cCCCCch
Q 048244          308 FFSVVGASGSIWNVINTAPSIFLFALV-QVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMATT-KGWGSLV  384 (413)
Q Consensus       308 ffavIGa~~~l~~~i~~ap~l~l~~~i-~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aaa-~~w~~Lv  384 (413)
                      -+.++|++-+....-+..+.....+.. =+.+|=++.+..+++++++-++.-++ -.+..=-...+-.+|.. .++++++
T Consensus       206 ~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~la  285 (311)
T COG0679         206 ALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLA  285 (311)
T ss_pred             HHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHH
Confidence            245667776653322233333333333 38899999999999999998866444 11122222334456665 4567777


Q ss_pred             HHHHHHHHHHHHHHH
Q 048244          385 VPGILAGIFGISMAT  399 (413)
Q Consensus       385 ~pgvL~GvlGyaiGt  399 (413)
                      .-.+...++--.+-.
T Consensus       286 a~~i~ist~ls~~t~  300 (311)
T COG0679         286 ASTILLSTLLSLLTL  300 (311)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777666555544

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=84.98  E-value=17  Score=41.36  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHhhC--CCCCCCC-----h-HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Q 048244           58 AFGLWSEKTKLGSMVSAALVSTLLGLAASNL--GIIPYEA-----K-AYAVFLEFLLPLSIPLLLFRADLRRIVQSTGIL  129 (413)
Q Consensus        58 a~~~~~~k~~~~~~l~~~vl~~l~~~~lsn~--glip~~s-----~-~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~  129 (413)
                      .+++..+..++.-++|.++++.++|+++.-.  |.+++..     . ... +.+..++..++-.=++.|.+.+.|..+..
T Consensus        24 l~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV  102 (810)
T TIGR00844        24 IFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSV  102 (810)
T ss_pred             HHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHH
Confidence            3344466667778899999999999999875  4454321     1 222 66777777777777888988888877664


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHh
Q 048244          130 LLA-FLLGSVATTVGTLVAFLLV  151 (413)
Q Consensus       130 L~~-F~~gsvgtviG~~va~~l~  151 (413)
                      +.. +..-.+++++.+.++++++
T Consensus       103 ~rLl~~~M~lT~livAL~a~~Li  125 (810)
T TIGR00844       103 TMLLVPVMTSGWLVIALFVWILV  125 (810)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 3344556666777777775

This model is specific for the fungal members of this family.

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=83.72  E-value=53  Score=33.26  Aligned_cols=134  Identities=20%  Similarity=0.228  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048244           72 VSAALVSTLLGLAASNLGIIPYEA--KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL  149 (413)
Q Consensus        72 l~~~vl~~l~~~~lsn~glip~~s--~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~  149 (413)
                      +=+.+++.++|.++...|+++.+.  ...+.+..+.+|..++--+-+.|-.+   .-.+....+..+.+.++++..+++.
T Consensus         6 i~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   82 (385)
T PF03547_consen    6 ILPIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLE---DLLSLWFIPVFAFIIFILGLLLGFL   82 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchh---hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            336778888999999999999863  46678888999988888888865322   2233445555556666666666666


Q ss_pred             HhcccccCcchHHHHHHhhhccccccccH--HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 048244          150 LVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISEALGVSPSVLAAGVAADNVITAIYFMILFT  212 (413)
Q Consensus       150 l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~  212 (413)
                      +.+.. -.+..|+..-.++++  -+..++  .++.+++--+ +-.++....|.+....++.+...
T Consensus        83 ~~~~~-~~~~~~~~~~~~~~~--~~N~~~lglpi~~~l~g~-~~~~~~~~~~~~~~i~~~~~~~~  143 (385)
T PF03547_consen   83 LSRLF-RLPKEWRGVFVLAAS--FGNTGFLGLPILQALFGE-RGVAYAIIFDVVNNIILWSLGYF  143 (385)
T ss_pred             HHHhc-CCCcccceEEEeccc--CCcchhhHHHHHHHHhcc-hhhhhehHHHHhhHHHHHHHHHH
Confidence            64311 123334433223322  233333  5566655333 34444444544444444444433

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK04972 putative transporter; Provisional

Probab=83.64  E-value=6.3  Score=43.01  Aligned_cols=108  Identities=21%  Similarity=0.216  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH-HHhccchhHHHHHhhccCCCcchHHH
Q 048244          298 DTLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLG-KLFHFDLKLLLIASNANVGGPTTACG  373 (413)
Q Consensus       298 ~~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~~~iAS~AnIGGpaTA~a  373 (413)
                      ..+-.+-+-+|++++|.+  .++.+-+++ +-.+++.++++..+..++.+.++ |++|+|+.+.   .-+--|+-|+.|+
T Consensus       442 ~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~~~---~G~~aG~~t~~~~  518 (558)
T PRK04972        442 NMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALL---FGAIMGARTCAPA  518 (558)
T ss_pred             HHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---HHHHhCCCCCcHH
Confidence            356666677799999976  345554555 56777888888888888888888 7999998843   3334577788888


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244          374 MATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTV  409 (413)
Q Consensus       374 ~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~l  409 (413)
                      ++.+.+..+=-.|.+=.+ .-|.++|.+=+.+++++
T Consensus       519 l~~~~~~~~~~~~~~gYa-~~yp~~~il~~l~~~~i  553 (558)
T PRK04972        519 MEIISDTARSNIPALGYA-GTYAIANVLLTLAGTLI  553 (558)
T ss_pred             HHHHHhhcCCCCcccccH-hHHHHHHHHHHHHHHHH
Confidence            888755333233332222 34777777777777754

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=82.21  E-value=6.7  Score=35.71  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHhcc--cchHHHHhh-h-hHHHHHHHHH-HHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHH
Q 048244          298 DTLALVLMQVFFSVVGAS--GSIWNVINT-A-PSIFLFALVQ-VTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTAC  372 (413)
Q Consensus       298 ~~lg~~ll~iffavIGa~--~~l~~~i~~-a-p~l~l~~~i~-l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~  372 (413)
                      +.+..+.+-+|++++|.+  .++.+-+++ . ...+..+.++ +..+.+..+...|+||+|..   .++-+--|.-|+.|
T Consensus        53 ~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~G~~aGa~T~tp  129 (154)
T TIGR01625        53 LFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYA---LTAGMLAGATTNTP  129 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHhccccChH
Confidence            345666677799999976  445555655 3 3455554444 44455566666689999975   33444558889999


Q ss_pred             HHhhccC
Q 048244          373 GMATTKG  379 (413)
Q Consensus       373 a~Aaa~~  379 (413)
                      +++++.+
T Consensus       130 aL~aa~~  136 (154)
T TIGR01625       130 ALDAAND  136 (154)
T ss_pred             HHHHHHH
Confidence            9988764

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=81.27  E-value=85  Score=33.95  Aligned_cols=128  Identities=14%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHH
Q 048244           52 ALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLL  131 (413)
Q Consensus        52 ~l~~~~a~~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~  131 (413)
                      ++++..+.....+|+    ++|.++.-++.|++++..+..|.-..--+.+....+|..++.-=++.|.|.++|..+..+.
T Consensus         6 l~~~~~~~~~l~~r~----~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~   81 (525)
T TIGR00831         6 LVMLATAVAVTVKFI----RLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIAL   81 (525)
T ss_pred             HHHHHHHHHHHhccc----CCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            333333334446665    5788888888888888765544311112355567778777777778999999988876554


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhcccccCcchHHHHHHhhhcccccccc--HHHHHHHhCCChH
Q 048244          132 AFLLGS-VATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSIN--YVAISEALGVSPS  190 (413)
Q Consensus       132 ~F~~gs-vgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N--~vAv~~al~~~~~  190 (413)
                      .=..++ +.+++++...+++.+      -.|. .+.+.|+-+.-+--  -.++-+..++|+.
T Consensus        82 la~~~vlit~~~v~~~~~~~~~------l~~~-~alllGails~TDpvav~~il~~~~~p~r  136 (525)
T TIGR00831        82 IAFLLVVVTTVVVGFSLNWILG------IPLA-LALILGAVLSPTDAVAVLGTFKSIRAPKK  136 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc------ccHH-HHHHHHHHhCCCCHHHHHHHHhcCCCCHH
Confidence            433443 344444555555432      1242 34444544443322  2344445577764

This model is specific for the bacterial members of this family.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	95.93

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=95.93  E-value=1.4  Score=43.19  Aligned_cols=66  Identities=14%  Similarity=0.071  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHhccchhHHHHH----hhccCCCcchHHHHhhc-cC-CCCchHHHHHHHHHHHHHHHHHHHHH
Q 048244          337 TVHLAIILGLGKLFHFDLKLLLIA----SNANVGGPTTACGMATT-KG-WGSLVVPGILAGIFGISMATFLGLGF  405 (413)
Q Consensus       337 ~iH~~~~l~~gkLfk~~l~~~~iA----S~AnIGGpaTA~a~Aaa-~~-w~~Lv~pgvL~GvlGyaiGtylGi~v  405 (413)
                      .+...+-...+|++|+|.++....    .+=|.   +.+..+|.. ++ .+....|..+..++=+.+|..+.-..
T Consensus       239 ~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs---~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~  310 (332)
T 3zux_A          239 GIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS---GLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYW  310 (332)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH---HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444567889999998765543    34455   355556654 42 47778888888887777776655443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00