Citrus Sinensis ID: 048295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MGNSCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccEcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGNSCRRVPLMILLLWFIFIFITIshchgsrstnvfnltpnsphqqtghflgflprhfpipssgpsrkhngiglqnwrsp
Flexible Loop (DISEMBL)
MGNSCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIpssgpsrkhngiglqnwrsp
Low Complexity Region (SEG)
MGNSCRRVPLMilllwfififitiSHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP
Disordered region (IsUnstruct)
*****RRVPLMILLLWFIFIFITISHCHGSRSTNVFNLT*******TGHFLGFLPRHF**********************
Disordered Region (DISOPRED)
******R**LMILLLWFIFIFITISHCHGSRSTNV*************HFLGFLPR************************
Disordered Region (DISEMBL)
MGNSCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP
Disordered Region (DISPRO)
***SCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSS*****************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNSCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q6DUW9	95	Protein IDA-LIKE 2 OS=Ara	yes	no	0.637	0.536	0.596	3e-11
Q6DUW6	93	Protein IDA-LIKE 4 OS=Ara	no	no	0.687	0.591	0.557	5e-10
Q6DUW7	99	Protein IDA-LIKE 3 OS=Ara	no	no	0.662	0.535	0.442	7e-08

>sp|Q6DUW9|IDL2_ARATH Protein IDA-LIKE 2 OS=Arabidopsis thaliana GN=IDL2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 6/57 (10%)

Query: 27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
          C+G+R+ TNVFN  P+  H       T  FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct: 34 CNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90

May be involved in floral abscission.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6DUW6|IDL4_ARATH Protein IDA-LIKE 4 OS=Arabidopsis thaliana GN=IDL4 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 26 HCHGSR--STNVFNLTPNSPHQ----QTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
          HC  SR  S++VF   PN  H     + GHFLGFLPRH P+P+S PSRKHN IG+Q   S
Sbjct: 33 HCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLS 92

Query: 80 P 80
          P
Sbjct: 93 P 93

May be involved in floral abscission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DUW7|IDL3_ARATH Protein IDA-LIKE 3 OS=Arabidopsis thaliana GN=IDL3 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 17/70 (24%)

Query: 27 CHGSRSTNVFNLTP--------NSPHQQTGH---------FLGFLPRHFPIPSSGPSRKH 69
          C+G+R+TNVFN +         + PH    H         FLG LPR FP+P+SGPSRKH
Sbjct: 30 CNGARTTNVFNTSSPPKQKDVVSPPHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKH 89

Query: 70 NGIGLQNWRS 79
          N IGL + ++
Sbjct: 90 NEIGLSSTKT 99

May be involved in floral abscission.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
224130590	78	predicted protein [Populus trichocarpa]	0.937	0.961	0.623	1e-15
255585419	87	conserved hypothetical protein [Ricinus	0.662	0.609	0.696	2e-13
357464559	76	Protein IDA-like protein [Medicago trunc	0.662	0.697	0.654	9e-12
357519819	76	Protein IDA-like protein [Medicago trunc	0.65	0.684	0.648	5e-11
388514557	76	unknown [Medicago truncatula]	0.662	0.697	0.636	9e-11
145334901	95	protein IDA-LIKE 2 [Arabidopsis thaliana	0.637	0.536	0.596	1e-09
297794057	91	hypothetical protein ARALYDRAFT_496681 [	0.637	0.560	0.543	1e-08
145332629	93	protein IDA-LIKE 4 [Arabidopsis thaliana	0.687	0.591	0.557	2e-08
297830528	92	hypothetical protein ARALYDRAFT_898244 [	0.687	0.597	0.540	3e-08
224082420	78	predicted protein [Populus trichocarpa]	0.75	0.769	0.459	3e-07

>gi|224130590|ref|XP_002328327.1| predicted protein [Populus trichocarpa] gi|222838042|gb|EEE76407.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 2/77 (2%)

Query: 4  SCRRVPLMILLLWFIFIFITISHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSS 63
          +CRR   ++L L+F+F    + + HGSRSTNVFN  P +  Q  GHFL FLPRH PIP+S
Sbjct: 4  ACRRPLTLLLCLFFLFFIFFVGYSHGSRSTNVFNFKPKT--QYKGHFLNFLPRHLPIPTS 61

Query: 64 GPSRKHNGIGLQNWRSP 80
          GPSR+HNGIGLQNWRSP
Sbjct: 62 GPSRRHNGIGLQNWRSP 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585419|ref|XP_002533404.1| conserved hypothetical protein [Ricinus communis] gi|223526749|gb|EEF28977.1| conserved hypothetical protein [Ricinus communis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 3/56 (5%)

Query: 26 HCHGSRST-NVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
          +CHGSR+T NVF++ P + H+  GHFL FLPRHFPIP+SGPSR+HN IGLQ+WRSP
Sbjct: 34 YCHGSRTTANVFDVKPKNQHR--GHFLNFLPRHFPIPTSGPSRRHNDIGLQSWRSP 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464559|ref|XP_003602561.1| Protein IDA-like protein [Medicago truncatula] gi|355491609|gb|AES72812.1| Protein IDA-like protein [Medicago truncatula]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 2/55 (3%)

Query: 26 HCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
          HC GSR+TNVF + P   H+  GHF GFLPR  PIP S PSRKHN IGLQ+ RSP
Sbjct: 24 HCDGSRATNVFKVKPKYEHK--GHFFGFLPRRIPIPYSSPSRKHNDIGLQSLRSP 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519819|ref|XP_003630198.1| Protein IDA-like protein [Medicago truncatula] gi|357519903|ref|XP_003630240.1| Protein IDA-like protein [Medicago truncatula] gi|355524220|gb|AET04674.1| Protein IDA-like protein [Medicago truncatula] gi|355524262|gb|AET04716.1| Protein IDA-like protein [Medicago truncatula]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 2/54 (3%)

Query: 27 CHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
          CHGSR+TN F + P S HQ  GHF GFLP+   IP S PSRKHN IGL++WRSP
Sbjct: 25 CHGSRTTNDFKVKPKSEHQ--GHFFGFLPKRMHIPYSTPSRKHNDIGLRSWRSP 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514557|gb|AFK45340.1| unknown [Medicago truncatula]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 26 HCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRSP 80
          HC GSR+TNVF + P   H+  GHF GFLP   PIP S PSRKHN IGLQ+ RSP
Sbjct: 24 HCDGSRATNVFKVKPKYEHK--GHFFGFLPGRIPIPYSSPSRKHNDIGLQSLRSP 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334901|ref|NP_001078796.1| protein IDA-LIKE 2 [Arabidopsis thaliana] gi|75120856|sp|Q6DUW9.1|IDL2_ARATH RecName: Full=Protein IDA-LIKE 2; Flags: Precursor gi|49425314|gb|AAT66015.1| ida like-protein 2 [Arabidopsis thaliana] gi|332010551|gb|AED97934.1| protein IDA-LIKE 2 [Arabidopsis thaliana]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 6/57 (10%)

Query: 27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
          C+G+R+ TNVFN  P+  H       T  FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct: 34 CNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794057|ref|XP_002864913.1| hypothetical protein ARALYDRAFT_496681 [Arabidopsis lyrata subsp. lyrata] gi|297310748|gb|EFH41172.1| hypothetical protein ARALYDRAFT_496681 [Arabidopsis lyrata subsp. lyrata]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 6/57 (10%)

Query: 27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
          C+G+R+ +NVF+  P+  H       +  FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct: 30 CNGARTNSNVFDSKPHKKHNDAVSSSSKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 86

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332629|ref|NP_001078180.1| protein IDA-LIKE 4 [Arabidopsis thaliana] gi|75120853|sp|Q6DUW6.1|IDL4_ARATH RecName: Full=Protein IDA-LIKE 4; Flags: Precursor gi|49425320|gb|AAT66018.1| ida like-protein 4 [Arabidopsis thaliana] gi|332642614|gb|AEE76135.1| protein IDA-LIKE 4 [Arabidopsis thaliana]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 26 HCHGSR--STNVFNLTPNSPHQ----QTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
          HC  SR  S++VF   PN  H     + GHFLGFLPRH P+P+S PSRKHN IG+Q   S
Sbjct: 33 HCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLS 92

Query: 80 P 80
          P
Sbjct: 93 P 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830528|ref|XP_002883146.1| hypothetical protein ARALYDRAFT_898244 [Arabidopsis lyrata subsp. lyrata] gi|297328986|gb|EFH59405.1| hypothetical protein ARALYDRAFT_898244 [Arabidopsis lyrata subsp. lyrata]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 26 HCHGSR--STNVFNLTPNSPHQ----QTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
          HC  SR  S++VF   PN  H     + GHFLGFLPRH P+P+S PSRKHN +G+Q   S
Sbjct: 32 HCDASRFSSSSVFYRNPNYDHNNNSMRRGHFLGFLPRHLPVPASAPSRKHNDVGIQALLS 91

Query: 80 P 80
          P
Sbjct: 92 P 92

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082420|ref|XP_002306687.1| predicted protein [Populus trichocarpa] gi|222856136|gb|EEE93683.1| predicted protein [Populus trichocarpa]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 20 IFITISHCHGSRSTNVFNL-TPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWR 78
          I  + SH +G+R + +F +  PNS +     F+GFLP+  PIP SGPS++HN IGLQ+ +
Sbjct: 16 ITSSASHTYGARQSQIFKMMKPNSQNSSPSTFMGFLPKGMPIPPSGPSKRHNDIGLQSSK 75

Query: 79 S 79
          S
Sbjct: 76 S 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:4010714076	95	IDL2 "inflorescence deficient	0.637	0.536	0.596	1.3e-13
TAIR|locus:4010713757	93	IDL4 "inflorescence deficient	0.687	0.591	0.557	1.5e-12
TAIR|locus:4010713951	99	IDL3 "inflorescence deficient	0.45	0.363	0.575	7.4e-12
TAIR|locus:4010713599	111	IDL5 "inflorescence deficient	0.6	0.432	0.436	3.9e-05

TAIR|locus:4010714076 IDL2 "inflorescence deficient in abscission (IDA)-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query:    27 CHGSRS-TNVFNLTPNSPHQQ-----TGHFLGFLPRHFPIPSSGPSRKHNGIGLQNW 77
             C+G+R+ TNVFN  P+  H       T  FLGFLPRHFP+P+SGPSRKHN IGL +W
Sbjct:    34 CNGARTNTNVFNSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90

GO:0005576 "extracellular region" evidence=ISM

GO:0010227 "floral organ abscission" evidence=IMP

TAIR|locus:4010713757 IDL4 "inflorescence deficient in abscission (IDA)-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/61 (55%), Positives = 39/61 (63%)

Query:    26 HCHGSR--STNVFNLTPNSPHQQT----GHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
             HC  SR  S++VF   PN  H       GHFLGFLPRH P+P+S PSRKHN IG+Q   S
Sbjct:    33 HCDASRFSSSSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLS 92

Query:    80 P 80
             P
Sbjct:    93 P 93

GO:0005576 "extracellular region" evidence=ISM

GO:0010227 "floral organ abscission" evidence=IMP

TAIR|locus:4010713951 IDL3 "inflorescence deficient in abscission (IDA)-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 23/40 (57%), Positives = 28/40 (70%)

Query:    44 HQQTGH----FLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
             HQ   H    FLG LPR FP+P+SGPSRKHN IGL + ++
Sbjct:    60 HQVQDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

GO:0005576 "extracellular region" evidence=ISM

GO:0010227 "floral organ abscission" evidence=IMP

GO:0048046 "apoplast" evidence=TAS

TAIR|locus:4010713599 IDL5 "inflorescence deficient in abscission (IDA)-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 24/55 (43%), Positives = 29/55 (52%)

Query:    25 SHCHGSRSTNVFNLTPNSPHQQTGHFLGFLPRHFPIPSSGPSRKHNGIGLQNWRS 79
             +H H ++  N  +  P S       F GFLP+  PIP S PSRKHN  GLQ   S
Sbjct:    52 NHHHQNQGFNGDDYPPES-------FSGFLPKTLPIPHSAPSRKHNVYGLQRTNS 99


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.467    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        67   0.00091  102 3  11 22  0.46    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.75u 0.11s 8.86t   Elapsed:  00:00:01
  Total cpu time:  8.75u 0.11s 8.86t   Elapsed:  00:00:01
  Start:  Mon May 20 22:26:02 2013   End:  Mon May 20 22:26:03 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0010227 "floral organ abscission" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0070002101 hypothetical protein (78 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	92.05
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	82.57

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=92.05  E-value=0.094  Score=35.39  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=16.7

Q ss_pred             chHHHHHHHHHHHHHHhcccccccc
Q 048295            8 VPLMILLLWFIFIFITISHCHGSRS   32 (80)
Q Consensus         8 ~~~~~~lllllL~l~~~~~C~gaR~   32 (80)
                      ..|.+++|++|+++|++..|...|-
T Consensus         2 W~l~~iii~~i~l~~~~~~~~~rRR   26 (130)
T PF12273_consen    2 WVLFAIIIVAILLFLFLFYCHNRRR   26 (130)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666667777777888876663

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=82.57  E-value=1.4  Score=29.30  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHHHhccccccc
Q 048295            9 PLMILLLWFIFIFITISHCHGSR   31 (80)
Q Consensus         9 ~~~~~lllllL~l~~~~~C~gaR   31 (80)
                      .+.+|.|+|.++|+ +++=.++|
T Consensus         5 ~~llL~l~LA~lLl-isSevaa~   26 (95)
T PF07172_consen    5 AFLLLGLLLAALLL-ISSEVAAR   26 (95)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhhH
Confidence            34333344444444 44444444

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00