Citrus Sinensis ID: 048339

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MAASPSEPPSPAAEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLKGS
ccccccccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEccccccHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcHHHHHHHHHHccccccEEEEEcccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccc
cccccccccccccccEEEEEEccccccEEEcccccccccccccEEEccccccccHHHHHHHHHHHHccccccEEEEccccccHHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHEccccHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccEEEEEccccEEEEEEEEccccccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHHccccccccccHEHHcccccEEccccccccccccHHHHHHHHcc
maaspseppspaaegiinvfwddgmlnhdtgkglfdtgfdpGFLEVLekhpensdrIKNIVSILkrgpispyiswhsgipaqipqllsfhtPDYINELVEAdkaggkmvcdgtvlnpgsWGAALLAVGTTLSAMKHVLDGHGKIayalvrppghhaqptmadgycflNNAGLAVQLALNSGCGKVVVIDIDvhygngtaegfyRSNKVLTISLhmnhgswgpshpqngtvdelgegegfgynlniplpngtgdrgyvHAMTELVVPaiqkfepnmIVLVVgqdssafdpngrqcltmdgyREMGRIVRSLADrysggrllivqeggyhvTYSAYCLHATLEGVLNLplallsdpiayypedeafpVKVIESIKQYQNdvipflkgs
maaspseppspaAEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLekhpensdRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGqdssafdpnGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLKGS
MaaspseppspaaeGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLKGS
**************GIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWG***********LGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFL***
***************IINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPI***PEDEAFPVKVIESIKQYQNDVIPFLKG*
***********AAEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLKGS
************AEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLKG*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAASPSEPPSPAAEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLKGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q94EJ2377 Histone deacetylase 8 OS= yes no 0.958 0.981 0.701 1e-161
O30107359 Uncharacterized protein A yes no 0.782 0.841 0.362 6e-50
Q70I53369 Histone deacetylase-like N/A no 0.753 0.788 0.345 2e-39
Q8RX28 660 Histone deacetylase 5 OS= no no 0.854 0.5 0.303 1e-38
Q8LRK8 682 Histone deacetylase 18 OS no no 0.790 0.447 0.311 3e-38
P53973 706 Histone deacetylase HDA1 yes no 0.854 0.467 0.307 1e-37
Q20296 955 Histone deacetylase 6 OS= no no 0.826 0.334 0.303 1e-36
P56523 687 Histone deacetylase clr3 yes no 0.818 0.459 0.291 7e-35
Q941D6423 Histone deacetylase 14 OS no no 0.717 0.654 0.3 8e-35
O27262331 Uncharacterized protein M yes no 0.689 0.803 0.342 1e-33
>sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1 Back     alignment and function desciption
 Score =  567 bits (1461), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 261/372 (70%), Positives = 321/372 (86%), Gaps = 2/372 (0%)

Query: 17  INVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWH 76
           ++VFW +GML HD  +G+FDTG+DPGFL+VLEKHPEN+DR++N++SIL+RGPI+P+++W 
Sbjct: 6   VDVFWHEGMLRHDAVEGVFDTGYDPGFLDVLEKHPENADRVRNMLSILRRGPIAPHVNWF 65

Query: 77  SGIPAQIPQLLSFHTPDYINELVEADKAGGKM-VCDGTVLNPGSWGAALLAVGTTLSAMK 135
           +G+PA + +LL FHT +YI +LVEADK+G +  +  GT ++PGSW AALLA GTTLSAM+
Sbjct: 66  TGLPAIVSELLMFHTSEYIEKLVEADKSGERCEIAAGTFMSPGSWEAALLAAGTTLSAMQ 125

Query: 136 HVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSG-CGKVVVIDIDVHY 194
           H+LD HGKIAYALVRPPGHH+QPT ADGYCFLNNA LAV+LALNSG C +V VIDIDVHY
Sbjct: 126 HILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVHY 185

Query: 195 GNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDR 254
           GNGTAEGFY S+KVLT+SLHMNHGSWG SHPQ G++DELGE  G GYNLN+PLPNGTGDR
Sbjct: 186 GNGTAEGFYTSDKVLTVSLHMNHGSWGSSHPQKGSIDELGEDVGLGYNLNVPLPNGTGDR 245

Query: 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRY 314
           GY +AM ELVVPA+++F P+M+VLVVGQDSSAFDPNGRQ LTM+GYR +G+I+R +A+ +
Sbjct: 246 GYEYAMNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEH 305

Query: 315 SGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQ 374
           S GRLL+VQEGGYHVTY+AYCLHA LEGVL +P   LSDPIAYYPE+EA  V  +ESIK 
Sbjct: 306 SHGRLLMVQEGGYHVTYAAYCLHAMLEGVLKIPEPHLSDPIAYYPEEEANAVAAVESIKT 365

Query: 375 YQNDVIPFLKGS 386
           Y  + +PFL+G+
Sbjct: 366 YHTEFVPFLRGT 377
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0130 PE=3 SV=1 Back     alignment and function description
>sp|Q70I53|HDAH_ALCSD Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3 Back     alignment and function description
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1 Back     alignment and function description
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1 Back     alignment and function description
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HDA1 PE=1 SV=1 Back     alignment and function description
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2 Back     alignment and function description
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=clr3 PE=1 SV=1 Back     alignment and function description
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1 Back     alignment and function description
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
356543630381 PREDICTED: histone deacetylase 8-like is 0.984 0.997 0.794 0.0
357453211386 Histone deacetylase [Medicago truncatula 0.994 0.994 0.776 1e-179
217072658386 unknown [Medicago truncatula] gi|3885195 0.994 0.994 0.773 1e-178
255565771382 Histone deacetylase, putative [Ricinus c 0.963 0.973 0.779 1e-176
225464988379 PREDICTED: histone deacetylase 8 [Vitis 0.961 0.978 0.822 1e-176
147865290379 hypothetical protein VITISV_025116 [Viti 0.961 0.978 0.819 1e-175
224104559379 histone deacetylase [Populus trichocarpa 0.961 0.978 0.805 1e-174
449492801375 PREDICTED: LOW QUALITY PROTEIN: histone 0.968 0.997 0.760 1e-171
449443482375 PREDICTED: histone deacetylase 8-like [C 0.968 0.997 0.760 1e-171
296084935348 unnamed protein product [Vitis vinifera] 0.898 0.997 0.827 1e-164
>gi|356543630|ref|XP_003540263.1| PREDICTED: histone deacetylase 8-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/380 (79%), Positives = 341/380 (89%)

Query: 1   MAASPSEPPSPAAEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNI 60
           MA + +E  S +  G I+VFW +GML HDTG G+FDTG DPGFLEVLEKHPENSDR+KN+
Sbjct: 1   MADAGAEGASSSTVGQIDVFWHEGMLKHDTGNGVFDTGMDPGFLEVLEKHPENSDRVKNL 60

Query: 61  VSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSW 120
           VSILKRGPISPYISWH G PA+IP+L SFHTP+YINELVE DK GGK +C GT LNPGSW
Sbjct: 61  VSILKRGPISPYISWHLGTPAKIPELFSFHTPEYINELVEVDKEGGKQLCGGTFLNPGSW 120

Query: 121 GAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS 180
            AALLA GTTLSAMKH+L+G GK++YALVRPPGHHAQP++ADGYCFLNNAGLAVQLAL+S
Sbjct: 121 DAALLAAGTTLSAMKHLLNGDGKVSYALVRPPGHHAQPSLADGYCFLNNAGLAVQLALDS 180

Query: 181 GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFG 240
           GC KV VIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQ+G+VDELGEGEG+G
Sbjct: 181 GCKKVAVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQSGSVDELGEGEGYG 240

Query: 241 YNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGY 300
           +NLNIPLPNGTGD+GYVHA  ELVVP+IQKF P+MIVLV+GQDS+AFDPNGRQCLTM+GY
Sbjct: 241 FNLNIPLPNGTGDKGYVHAFNELVVPSIQKFGPDMIVLVLGQDSNAFDPNGRQCLTMEGY 300

Query: 301 REMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPE 360
           RE+GRIV  LA R+S GRLLIVQEGGYHVTYSAYCLHATLEG+LNLP+ LL+DPIA+Y +
Sbjct: 301 REIGRIVHLLAKRHSAGRLLIVQEGGYHVTYSAYCLHATLEGILNLPMPLLADPIAFYLD 360

Query: 361 DEAFPVKVIESIKQYQNDVI 380
           DE F V+VIE+IK YQ D +
Sbjct: 361 DETFSVQVIEAIKNYQKDKV 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357453211|ref|XP_003596882.1| Histone deacetylase [Medicago truncatula] gi|87240922|gb|ABD32780.1| Histone deacetylase superfamily [Medicago truncatula] gi|355485930|gb|AES67133.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072658|gb|ACJ84689.1| unknown [Medicago truncatula] gi|388519583|gb|AFK47853.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255565771|ref|XP_002523875.1| Histone deacetylase, putative [Ricinus communis] gi|223536963|gb|EEF38601.1| Histone deacetylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225464988|ref|XP_002277237.1| PREDICTED: histone deacetylase 8 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147865290|emb|CAN79825.1| hypothetical protein VITISV_025116 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104559|ref|XP_002313479.1| histone deacetylase [Populus trichocarpa] gi|222849887|gb|EEE87434.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449492801|ref|XP_004159105.1| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443482|ref|XP_004139506.1| PREDICTED: histone deacetylase 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296084935|emb|CBI28344.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2201826377 HDA08 "AT1G08460" [Arabidopsis 0.958 0.981 0.701 6.9e-150
UNIPROTKB|Q4KBB7377 PFL_3361 "Histone deacetylase 0.769 0.787 0.379 2.4e-51
TIGR_CMR|SPO_3195364 SPO_3195 "histone deacetylase 0.769 0.815 0.358 2.5e-49
UNIPROTKB|Q5LQF5371 SPO2535 "Histone deacetylase/A 0.766 0.797 0.367 5.2e-42
TIGR_CMR|SPO_2535371 SPO_2535 "histone deacetylase/ 0.766 0.797 0.367 5.2e-42
TIGR_CMR|SPO_A0096344 SPO_A0096 "histone deacetylase 0.740 0.831 0.350 1.6e-40
SGD|S000004966 706 HDA1 "Putative catalytic subun 0.740 0.405 0.322 1.9e-39
UNIPROTKB|Q604Q2310 MCA2486 "Histone deacetylase/A 0.691 0.861 0.373 2.9e-39
TAIR|locus:2095087564 HDA15 "AT3G18520" [Arabidopsis 0.740 0.507 0.343 1.3e-38
UNIPROTKB|Q3Z9M2341 DET0330 "Histone deacetylase f 0.784 0.888 0.330 2.6e-38
TAIR|locus:2201826 HDA08 "AT1G08460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 261/372 (70%), Positives = 321/372 (86%)

Query:    17 INVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWH 76
             ++VFW +GML HD  +G+FDTG+DPGFL+VLEKHPEN+DR++N++SIL+RGPI+P+++W 
Sbjct:     6 VDVFWHEGMLRHDAVEGVFDTGYDPGFLDVLEKHPENADRVRNMLSILRRGPIAPHVNWF 65

Query:    77 SGIPAQIPQLLSFHTPDYINELVEADKAGGKM-VCDGTVLNPGSWGAALLAVGTTLSAMK 135
             +G+PA + +LL FHT +YI +LVEADK+G +  +  GT ++PGSW AALLA GTTLSAM+
Sbjct:    66 TGLPAIVSELLMFHTSEYIEKLVEADKSGERCEIAAGTFMSPGSWEAALLAAGTTLSAMQ 125

Query:   136 HVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSG-CGKVVVIDIDVHY 194
             H+LD HGKIAYALVRPPGHH+QPT ADGYCFLNNA LAV+LALNSG C +V VIDIDVHY
Sbjct:   126 HILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVHY 185

Query:   195 GNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDR 254
             GNGTAEGFY S+KVLT+SLHMNHGSWG SHPQ G++DELGE  G GYNLN+PLPNGTGDR
Sbjct:   186 GNGTAEGFYTSDKVLTVSLHMNHGSWGSSHPQKGSIDELGEDVGLGYNLNVPLPNGTGDR 245

Query:   255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRY 314
             GY +AM ELVVPA+++F P+M+VLVVGQDSSAFDPNGRQ LTM+GYR +G+I+R +A+ +
Sbjct:   246 GYEYAMNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEH 305

Query:   315 SGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQ 374
             S GRLL+VQEGGYHVTY+AYCLHA LEGVL +P   LSDPIAYYPE+EA  V  +ESIK 
Sbjct:   306 SHGRLLMVQEGGYHVTYAAYCLHAMLEGVLKIPEPHLSDPIAYYPEEEANAVAAVESIKT 365

Query:   375 YQNDVIPFLKGS 386
             Y  + +PFL+G+
Sbjct:   366 YHTEFVPFLRGT 377
GO:0004407 "histone deacetylase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0016575 "histone deacetylation" evidence=ISS
UNIPROTKB|Q4KBB7 PFL_3361 "Histone deacetylase family protein" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3195 SPO_3195 "histone deacetylase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQF5 SPO2535 "Histone deacetylase/AcuC/AphA family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2535 SPO_2535 "histone deacetylase/AcuC/AphA family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0096 SPO_A0096 "histone deacetylase/AcuC/AphA family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
SGD|S000004966 HDA1 "Putative catalytic subunit of the HDA1 histone deacetylase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q604Q2 MCA2486 "Histone deacetylase/AcuC/AphA family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TAIR|locus:2095087 HDA15 "AT3G18520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z9M2 DET0330 "Histone deacetylase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94EJ2HDA8_ARATH3, ., 5, ., 1, ., 9, 80.70160.95850.9814yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.991
3rd Layer3.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037383001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (379 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019295001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (317 aa)
      • 0.419

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 1e-169
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-100
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-100
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 2e-89
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 4e-81
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 3e-73
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 3e-62
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 8e-60
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-55
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 3e-47
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 9e-47
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 1e-45
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 4e-42
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 1e-41
cd11683337 cd11683, HDAC10, Histone deacetylase 10 8e-41
cd10008378 cd10008, HDAC7, Histone deacetylase 7 2e-36
cd10007420 cd10007, HDAC5, Histone deacetylase 5 1e-34
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 2e-34
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 4e-34
cd10009379 cd10009, HDAC9, Histone deacetylase 9 6e-34
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-33
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 1e-32
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-32
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 7e-25
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 9e-25
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 4e-23
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 8e-23
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 3e-21
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 2e-16
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 8e-15
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 3e-04
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information 
 Score =  477 bits (1231), Expect = e-169
 Identities = 153/343 (44%), Positives = 203/343 (59%), Gaps = 7/343 (2%)

Query: 19  VFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSG 78
             WD+  L HDTG G        G L    +HPEN +  + I ++L+   +S ++   + 
Sbjct: 3   FVWDERYLWHDTGTGALFL-PVGGLLVQPGRHPENPETKRRIKNLLEVSGLSDHLVLITP 61

Query: 79  IPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVL 138
            PA   +LL  HTP+YI+ +  A  AGG     GT   PGS+  ALLA G  ++A+  VL
Sbjct: 62  RPATDEELLRVHTPEYIDRVKAASAAGGGEAGGGTPFGPGSYEIALLAAGGAIAAVDAVL 121

Query: 139 DGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNG 197
           DG    AYALVRPPGHHA+P    G+C  NN  +A + AL   G  +V V+D DVH+GNG
Sbjct: 122 DGEVDNAYALVRPPGHHAEPDQGMGFCLFNNVAIAARHALAVGGVKRVAVVDWDVHHGNG 181

Query: 198 TAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYV 257
           T   FY    VLTISLH +        P +G V+E GEG G GYNLNIPLP G+GD  Y+
Sbjct: 182 TQAIFYDDPDVLTISLHQDR----CFPPDSGAVEERGEGAGEGYNLNIPLPPGSGDGAYL 237

Query: 258 HAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGG 317
           HA   +V+PA++ F P +I++  G D+SAFDP GR  LT DG+R + R +R LAD   GG
Sbjct: 238 HAFERIVLPALRAFRPELIIVASGFDASAFDPLGRMMLTSDGFRALTRKLRDLADELCGG 297

Query: 318 RLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPE 360
           RL++V EGGY   Y  +C  A LE +  +    ++DP+ YYPE
Sbjct: 298 RLVMVHEGGYSEAYVPFCGLAVLEELSGVRTG-IADPLLYYPE 339

This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors. Length = 359
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
cd01835193 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SG 81.65
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-87  Score=659.61  Aligned_cols=314  Identities=41%  Similarity=0.714  Sum_probs=298.2

Q ss_pred             CCcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHH
Q 048339           14 EGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPD   93 (386)
Q Consensus        14 ~~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~   93 (386)
                      ++++.++||+.++.|.++.+                |||+|.|++.+.++|++.++...+++++|++++.++|++||+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~----------------Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~   64 (340)
T COG0123           1 MMKTALIYHPEFLEHEPPPG----------------HPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPD   64 (340)
T ss_pred             CCcceEeeCHHHhcCCCCCC----------------CCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHH
Confidence            35688999999999999874                99999999999999999887777889999999999999999999


Q ss_pred             HHHHHHHHhhcCC-ccccCCcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCCCCCCCCCCCCccccchHHH
Q 048339           94 YINELVEADKAGG-KMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGL  172 (386)
Q Consensus        94 Yl~~l~~~~~~~~-~~~~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppGHHA~~~~~~GFC~~NnvAi  172 (386)
                      ||+.|++.+..+. ..++.||++++++|++|++++|++++|++.+++|+ +++||++|||||||++++++|||+|||+||
T Consensus        65 yv~~l~~~~~~~~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~-~~~~~~~rppgHHA~~~~a~GFC~fNn~Ai  143 (340)
T COG0123          65 YVEFLESLSEEEGYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE-DNAFALVRPPGHHAGRDRASGFCLFNNVAI  143 (340)
T ss_pred             HHHHHHHhccccccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-cceEEECCCCcccccCCCCceeeeecHHHH
Confidence            9999999887743 47899999999999999999999999999999997 789999999999999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCCcccCCCCCCceeeecCCCCCCC
Q 048339          173 AVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTG  252 (386)
Q Consensus       173 Aa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~~e~G~g~g~g~~~NvpL~~g~~  252 (386)
                      ||++++++|.+||+|||||+|||||||+|||+|++|+++|+|++..   ++||+||..+|+|.|+ +|+++|||||+|++
T Consensus       144 aa~~l~~~~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~---~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~  219 (340)
T COG0123         144 AAKYLLKKGVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGR---PFYPGTGGADEIGEGK-EGNNVNIPLPPGTG  219 (340)
T ss_pred             HHHHHHHcCCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCC---CCCCcCCCccccccCc-ccceEeeecCCCCC
Confidence            9999998899999999999999999999999999999999999743   6799999999999999 99999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCCcH
Q 048339          253 DRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYS  332 (386)
Q Consensus       253 d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~~  332 (386)
                      |++|+.+|+.+++|++++|+||+||||||||+|.+||++.|+||+++|.++++.|+++|.++ ++|+++||||||+..++
T Consensus       220 d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~-~~~~~~vleGGY~~~~l  298 (340)
T COG0123         220 DDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGY-GGPVVAVLEGGYNLDAL  298 (340)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998 89999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcC
Q 048339          333 AYCLHATLEGVLNLPLA  349 (386)
Q Consensus       333 ~~~~~~~~~~l~~~~~~  349 (386)
                      ++++.+++.++.+...+
T Consensus       299 ~~~~~~~~~~l~~~~~~  315 (340)
T COG0123         299 ARSLVAFLAGLAGLVEE  315 (340)
T ss_pred             HHHHHHHHHHHcCCCcc
Confidence            99999999999987543

>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 6e-42
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 6e-42
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 3e-31
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 9e-31
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 1e-30
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 3e-30
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 3e-30
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 3e-30
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 3e-30
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 1e-29
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 1e-29
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 2e-29
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 1e-22
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 1e-22
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-22
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 3e-22
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 3e-22
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 3e-22
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 3e-22
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 3e-22
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 3e-22
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 3e-22
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 8e-22
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 4e-21
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 7e-21
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 7e-21
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 157/304 (51%), Gaps = 13/304 (4%)
Query: 50  HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADK--AGGK 107
           HP+   R   +V     G I  +++  + + A    +L  H+  ++  +        GG 
Sbjct: 39  HPDTKRRFHELVC--ASGQIE-HLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGD 95
Query: 108 MVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFL 167
                T++  G    A L+ G  +   + V  G     YALV PPGHHA    A G+C  
Sbjct: 96  TGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIF 155
Query: 168 NNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQ 226
           NN  +A   A    G  +V ++D DVH+GNGT + ++    VLTISLH  H  + P    
Sbjct: 156 NNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLH-QHLCFPP---D 211
Query: 227 NGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSA 286
           +G   E G G G GYN+N+PLP G+G+  Y+HAM ++V+PA++ + P +I++  G D+S 
Sbjct: 212 SGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASM 271
Query: 287 FDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLE---GV 343
            DP  R  +T DG+R+M R     A     GR++ VQEGGY   Y  +C  A +E   GV
Sbjct: 272 LDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGV 331
Query: 344 LNLP 347
            +LP
Sbjct: 332 RSLP 335
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 1e-126
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-98
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 2e-95
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 3e-91
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 8e-91
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 7e-82
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 9e-81
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 1e-80
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
 Score =  366 bits (941), Expect = e-126
 Identities = 108/369 (29%), Positives = 175/369 (47%), Gaps = 10/369 (2%)

Query: 20  FWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGI 79
            W+      DTG G          ++ +  H  + D  +    ++       +++  + +
Sbjct: 6   VWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAV 65

Query: 80  PAQIPQLLSFHTPDYINELVEAD--KAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMKHV 137
            A    +L  H+  ++  +        GG      T++  G    A L+ G  +   + V
Sbjct: 66  AATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRV 125

Query: 138 LDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGN 196
             G     YALV PPGHHA    A G+C  NN  +A   A    G  +V ++D DVH+GN
Sbjct: 126 ATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGN 185

Query: 197 GTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGY 256
           GT + ++    VLTISLH  H  +    P +G   E G G G GYN+N+PLP G+G+  Y
Sbjct: 186 GTQDIWWNDPSVLTISLH-QHLCF---PPDSGYSTERGAGNGHGYNINVPLPPGSGNAAY 241

Query: 257 VHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSG 316
           +HAM ++V+PA++ + P +I++  G D+S  DP  R  +T DG+R+M R     A     
Sbjct: 242 LHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICD 301

Query: 317 GRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFPVKVIESIKQYQ 376
           GR++ VQEGGY   Y  +C  A +E +  +    L DP   +         ++++ +   
Sbjct: 302 GRIVFVQEGGYSPHYLPFCGLAVIEELTGVR--SLPDPYHEFLAGMG-GNTLLDAERAAI 358

Query: 377 NDVIPFLKG 385
            +++P L  
Sbjct: 359 EEIVPLLAD 367
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-94  Score=718.61  Aligned_cols=355  Identities=31%  Similarity=0.522  Sum_probs=322.2

Q ss_pred             cEEEEEcccccCccCCCC-CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHH
Q 048339           16 IINVFWDDGMLNHDTGKG-LFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDY   94 (386)
Q Consensus        16 ~~~ivyde~~l~H~~~~~-~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Y   94 (386)
                      ++.++||++|++|+++.+ .+..... +..+....|||+|+|++++.+.|++.++...+++++|++|+.++|++||+++|
T Consensus         2 ~t~~~y~~~~~~h~~~~~~~~~~~~g-~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Y   80 (369)
T 1zz1_A            2 AIGYVWNTLYGWVDTGTGSLAAANLT-ARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAH   80 (369)
T ss_dssp             CEEEECCGGGGGCCCCSSSSSCCBTT-TTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHH
T ss_pred             eEEEEEchHHcccCCCCccccccccc-ccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHH
Confidence            689999999999999864 2221111 12333344999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHhh-cCCccccC-CcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCCCCCCCCCCCCccccchHHH
Q 048339           95 INELVEADK-AGGKMVCD-GTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGL  172 (386)
Q Consensus        95 l~~l~~~~~-~~~~~~~~-~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppGHHA~~~~~~GFC~~NnvAi  172 (386)
                      |++|++.+. .+...++. ||++++++|++|++++|+++.|++.+++|+.+++||++|||||||++++++|||+|||+||
T Consensus        81 v~~l~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppGHHA~~~~a~GFC~fNnvAi  160 (369)
T 1zz1_A           81 LENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSV  160 (369)
T ss_dssp             HHHHHHHHHSTTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCCTTCCTTCCBTTBSSCHHHH
T ss_pred             HHHHHHhCccccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCccCcCCCCCCCchHhhHHHH
Confidence            999999887 55566788 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCC-CCCCCcccCCCCCCceeeecCCCCC
Q 048339          173 AVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHP-QNGTVDELGEGEGFGYNLNIPLPNG  250 (386)
Q Consensus       173 Aa~~~~~~-g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P-~tg~~~e~G~g~g~g~~~NvpL~~g  250 (386)
                      ||++|+++ |++||+|||||||||||||+|||+||+|||+|+|++     ++|| +||..+|+|.|+|+|+++|||||+|
T Consensus       161 Aa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~-----~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g  235 (369)
T 1zz1_A          161 AAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH-----LCFPPDSGYSTERGAGNGHGYNINVPLPPG  235 (369)
T ss_dssp             HHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEET-----TSSSTTCCCTTCCCCGGGTTCEEEEEECTT
T ss_pred             HHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCC-----CCCCCCCCcccccCCCCCCceEEeeecCCC
Confidence            99999976 899999999999999999999999999999999997     5799 9999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCC
Q 048339          251 TGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVT  330 (386)
Q Consensus       251 ~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~  330 (386)
                      ++|++|+.+|+++|+|++++|+||+||||||||+|.+||+|+++||+++|.++++.|+++|.++|++|++++|||||+++
T Consensus       236 ~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~  315 (369)
T 1zz1_A          236 SGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPH  315 (369)
T ss_dssp             CBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCcCCCCCCCCC------CCCCcchHHHHHHHHHHHhhh
Q 048339          331 YSAYCLHATLEGVLNLPLALLSDPIAY------YPEDEAFPVKVIESIKQYQND  378 (386)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  378 (386)
                      ++++||.+++++|++.+.  +.+|...      .++....++++++++++.|..
T Consensus       316 ~l~~~~~~~~~~l~g~~~--~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  367 (369)
T 1zz1_A          316 YLPFCGLAVIEELTGVRS--LPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLAD  367 (369)
T ss_dssp             THHHHHHHHHHHHHCCCC--CCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGGG
T ss_pred             HHHHHHHHHHHHHhCCCC--CCCchhHHHhhccccchHHHHHHHHHHHHHHhhc
Confidence            999999999999999765  5555432      234455678888888888843
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-57
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 2e-48
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 3e-47
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  190 bits (482), Expect = 2e-57
 Identities = 99/398 (24%), Positives = 170/398 (42%), Gaps = 52/398 (13%)

Query: 19  VFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSG 78
           + +D  ML H    G                HPE++ RI++I S L+   +        G
Sbjct: 8   LIYDSVMLKHQCSCGDNSR------------HPEHAGRIQSIWSRLQERGLRSQCECLRG 55

Query: 79  IPAQIPQLLSFHTPDYINEL------------------------VEADKAGGKMVCDGTV 114
             A + +L S H+  ++                           V     G  +  D   
Sbjct: 56  RKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIW 115

Query: 115 LNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAV 174
               S  AA  A G+       V     K  +A+VRPPGHHA  + A G+CF N+  +A 
Sbjct: 116 NELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIAC 175

Query: 175 QLALNSGCGK-VVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDEL 233
           +          ++++D DVH+GNGT + FY+   VL ISLH +    G   P +G VDE+
Sbjct: 176 RQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHD--DGNFFPGSGAVDEV 233

Query: 234 GEGEGFGYNLNIPL----PNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFD- 288
           G G G G+N+N+          GD  Y+ A   +V+P  ++F P+++++  G D++    
Sbjct: 234 GAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHP 293

Query: 289 -PNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLP 347
            P G   ++   +  M + + +LA    GG +++  EGG+ +T       A +  +L   
Sbjct: 294 APLGGYHVSAKCFGYMTQQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNR 349

Query: 348 LALLSDP-IAYYPEDEAFPVKVIESIKQYQNDVIPFLK 384
           +  LS+      P   A  ++ +E++ +  +     ++
Sbjct: 350 VDPLSEEGWKQKPNLNA--IRSLEAVIRVHSKYWGCMQ 385
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-90  Score=692.80  Aligned_cols=348  Identities=30%  Similarity=0.445  Sum_probs=309.5

Q ss_pred             cEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHHH
Q 048339           16 IINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI   95 (386)
Q Consensus        16 ~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Yl   95 (386)
                      .|++|||++|++|+++.+.            ...|||+|+|++++++.|++.++...+++++|++|+.++|++||+++||
T Consensus         5 ~Tg~vyd~~~l~H~~~~g~------------~~~HPE~p~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI   72 (386)
T d3c10a1           5 TTGLIYDSVMLKHQCSCGD------------NSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHV   72 (386)
T ss_dssp             CEEEECCGGGGGCCCTTCC------------GGGCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHH
T ss_pred             CEEEEECHHHhcCCCCCCC------------CCCCCCCHHHHHHHHHHHHhcCCccCCeEeCCCCCCHHHHHHhCCHHHH
Confidence            5899999999999987531            2249999999999999999999988899999999999999999999999


Q ss_pred             HHHHHHhhc-----------------------CCccccCCcccCc-ChHHHHHHHHHHHHHHHHHHHhcccceEEeecCC
Q 048339           96 NELVEADKA-----------------------GGKMVCDGTVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRP  151 (386)
Q Consensus        96 ~~l~~~~~~-----------------------~~~~~~~~t~~~~-~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rp  151 (386)
                      +.+++....                       +...++.||++++ +++++|++++|++++|++.+++|+.+++||++||
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rp  152 (386)
T d3c10a1          73 LLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRP  152 (386)
T ss_dssp             HHHHCCTTCSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSS
T ss_pred             HHHhhchhhhhcccccccchhhhhhhhcccCCCCcccCCCcccCcchHHHHHHHHhhHHHHHHhhhhcCccccccccccc
Confidence            887642211                       1224567888887 8999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccccchHHHHHHHHHhcC-CCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCC
Q 048339          152 PGHHAQPTMADGYCFLNNAGLAVQLALNSG-CGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTV  230 (386)
Q Consensus       152 pGHHA~~~~~~GFC~~NnvAiAa~~~~~~g-~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~  230 (386)
                      |||||.+++++|||+|||+||||+++++++ ++||+|||||||||||||+|||+|++|+|+|||+++.  +++||+||..
T Consensus       153 pGHHA~~~~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~--~~~~p~tG~~  230 (386)
T d3c10a1         153 PGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDD--GNFFPGSGAV  230 (386)
T ss_dssp             CCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTT--TTSTTCCCCT
T ss_pred             ccccccccccCCcccccHHHHHHHHHHhhcccCCceEEecccCCCCceeeEeeccccccccccccccc--cccCCCCCCH
Confidence            999999999999999999999999999875 8999999999999999999999999999999999754  3689999999


Q ss_pred             cccCCCCCCceeeecCCC----CCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCC--CCCCCcCCHHHHHHHH
Q 048339          231 DELGEGEGFGYNLNIPLP----NGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFD--PNGRQCLTMDGYREMG  304 (386)
Q Consensus       231 ~e~G~g~g~g~~~NvpL~----~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~D--plg~~~lt~~gy~~~~  304 (386)
                      +|+|.|+|+|+|+|+|||    ++++|++|+.+|+++|.|++++|+||+||||||||+|++|  |+|+++||+++|.+++
T Consensus       231 ~e~G~g~g~g~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg~l~lt~~~~~~~~  310 (386)
T d3c10a1         231 DEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMT  310 (386)
T ss_dssp             TCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHH
T ss_pred             HhcCCCCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCccccccCcchhhcCccCHHHHHHHH
Confidence            999999999999999987    5689999999999999999999999999999999999999  8999999999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCCCCcHHHHHHHHHHHHhCCCcCCCCCC-CCCCCCC--cchHHHHHHHHHHHhhhhhc
Q 048339          305 RIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDP-IAYYPED--EAFPVKVIESIKQYQNDVIP  381 (386)
Q Consensus       305 ~~l~~~a~~~~~g~vv~vleGGY~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~  381 (386)
                      ++|+++|    ++|++++||||||+.+++++|.+++.+|+|.+.+.+.++ ....|+.  ...++++++.++++|+||+|
T Consensus       311 ~~l~~~~----~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~  386 (386)
T d3c10a1         311 QQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR  386 (386)
T ss_dssp             HHHTTSG----GGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred             HHHHHHc----CCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHhhHhhcC
Confidence            9998765    589999999999999999999999999999764433322 2223333  24467888999999999986
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure