Citrus Sinensis ID: 048387

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGIPVDFNFYKTFWSLQ
Secondary Structure (PSIPRED)
cEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEcEccccEEEEcccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
IVLYLCEKEHVEGGMIFQLLEDLtemstmkncKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLahffplsersavnikgvfntsnetkyekdppdgipvdfnFYKTFWSLQ
Flexible Loop (DISEMBL)
IVLYLcekehveggMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFntsnetkyekdppdgipvDFNFYKTFWSLQ
Low Complexity Region (SEG)
IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGIPVDFNFYKTFWSLQ
Disordered region (IsUnstruct)
*VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNT************GIPVDFNFYKTFWS**
Disordered Region (DISOPRED)
IVLYLC*KEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY*K******PVDFNFYKTFWSLQ
Disordered Region (DISEMBL)
IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGIPVDFNFYKTFWSLQ
Disordered Region (DISPRO)
IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGIPVDFNFYKTFWSLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGIPVDFNFYKTFWSLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q8R3N6	657	THO complex subunit 1 OS=	yes	no	0.880	0.179	0.362	6e-20
Q96FV9	657	THO complex subunit 1 OS=	yes	no	0.880	0.179	0.362	7e-20
Q9URT2	752	Uncharacterized protein P	yes	no	0.880	0.156	0.345	2e-14

>sp|Q8R3N6|THOC1_MOUSE THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 31/149 (20%)

Query: 17  FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
           F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct: 94  FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query: 77  VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNET-------------KYEKDPPDG---- 119
           VFCGRI +FLA  FPLSE+S +N++  FN  N T             K+ +D  +G    
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVE 213

Query: 120 --------------IPVDFNFYKTFWSLQ 134
                         IP+D+N Y+ FWSLQ
Sbjct: 214 EGEMGDDEAPTTCSIPIDYNLYRKFWSLQ 242

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1 (By similarity). Essential for early embryonic development. Required for normal gene expression during postnatal testis development.
Mus musculus (taxid: 10090)

>sp|Q96FV9|THOC1_HUMAN THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 31/149 (20%)

Query: 17  FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
           F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct: 94  FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query: 77  VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNET-------------KYEKDPPDG---- 119
           VFCGRI +FLA  FPLSE+S +N++  FN  N T             K+ +D  +G    
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVE 213

Query: 120 --------------IPVDFNFYKTFWSLQ 134
                         IP+D+N Y+ FWSLQ
Sbjct: 214 EGEMGDEEAPTTCSIPIDYNLYRKFWSLQ 242

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1.

Homo sapiens (taxid: 9606)

>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 15/133 (11%)

Query: 15  MIFQLLEDLTEMSTMKNCKDIFGYIESKQDIL-GKLELFARGKLVMLRTCNQLLRRLSKA 73
           + F +LE+L ++ T+  C  ++ Y E++  ++ G +    RG  V+LR  N+LLRRLS+ 
Sbjct: 101 LPFLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSNRGRGP-VLLRISNELLRRLSRQ 159

Query: 74  NDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNE-TKYEKDPPDGIPV----DFNFYK 128
            +  FCGRI + L+  FP  ERS  N++G +NT +   K E  PP   P+    D +++K
Sbjct: 160 ENSSFCGRIDILLSKAFPPEERSGANLRGDYNTVHSFGKVELSPP-STPISDRTDLSYHK 218

Query: 129 -------TFWSLQ 134
                   +W LQ
Sbjct: 219 KLNTLFTAYWDLQ 231

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
297807009	597	hypothetical protein ARALYDRAFT_908935 [	1.0	0.224	0.962	6e-72
18416110	599	THO complex subunit 1 [Arabidopsis thali	1.0	0.223	0.962	6e-72
23463069	599	At5g09860/MYH9_7 [Arabidopsis thaliana]	1.0	0.223	0.962	6e-72
334187564	598	THO complex subunit 1 [Arabidopsis thali	1.0	0.224	0.962	7e-72
225463994	607	PREDICTED: THO complex subunit 1-like [V	1.0	0.220	0.947	1e-70
359487131	601	PREDICTED: THO complex subunit 1-like [V	1.0	0.222	0.947	1e-70
296087837	613	unnamed protein product [Vitis vinifera]	1.0	0.218	0.947	1e-70
296087823	613	unnamed protein product [Vitis vinifera]	1.0	0.218	0.947	1e-70
255578237	608	nuclear matrix protein, putative [Ricinu	1.0	0.220	0.940	3e-70
449445104	607	PREDICTED: THO complex subunit 1-like [C	1.0	0.220	0.940	4e-70

>gi|297807009|ref|XP_002871388.1| hypothetical protein ARALYDRAFT_908935 [Arabidopsis lyrata subsp. lyrata] gi|297317225|gb|EFH47647.1| hypothetical protein ARALYDRAFT_908935 [Arabidopsis lyrata subsp. lyrata]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/134 (96%), Positives = 131/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           +VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD+FGYIESKQDILGK ELFARGKLVML
Sbjct: 88  VVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVML 147

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct: 148 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGI 207

Query: 121 PVDFNFYKTFWSLQ 134
            VDFNFYKTFWSLQ
Sbjct: 208 SVDFNFYKTFWSLQ 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416110|ref|NP_568219.1| THO complex subunit 1 [Arabidopsis thaliana] gi|15983384|gb|AAL11560.1|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gi|16226756|gb|AAL16253.1|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gi|332004073|gb|AED91456.1| THO complex subunit 1 [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/134 (96%), Positives = 131/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           +VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD+FGYIESKQDILGK ELFARGKLVML
Sbjct: 90  VVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVML 149

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct: 150 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGI 209

Query: 121 PVDFNFYKTFWSLQ 134
            VDFNFYKTFWSLQ
Sbjct: 210 SVDFNFYKTFWSLQ 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23463069|gb|AAN33204.1| At5g09860/MYH9_7 [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/134 (96%), Positives = 131/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           +VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD+FGYIESKQDILGK ELFARGKLVML
Sbjct: 90  VVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVML 149

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct: 150 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGI 209

Query: 121 PVDFNFYKTFWSLQ 134
            VDFNFYKTFWSLQ
Sbjct: 210 SVDFNFYKTFWSLQ 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187564|ref|NP_001190269.1| THO complex subunit 1 [Arabidopsis thaliana] gi|332004074|gb|AED91457.1| THO complex subunit 1 [Arabidopsis thaliana]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/134 (96%), Positives = 131/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           +VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD+FGYIESKQDILGK ELFARGKLVML
Sbjct: 90  VVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVML 149

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct: 150 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGI 209

Query: 121 PVDFNFYKTFWSLQ 134
            VDFNFYKTFWSLQ
Sbjct: 210 SVDFNFYKTFWSLQ 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463994|ref|XP_002263874.1| PREDICTED: THO complex subunit 1-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/134 (94%), Positives = 130/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           IVLYLCEKEHVEGGMIFQLLEDLTEMSTM+NCKDIF YIESKQDILGK ELFARGKLVML
Sbjct: 93  IVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKDIFAYIESKQDILGKQELFARGKLVML 152

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKD P+GI
Sbjct: 153 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPEGI 212

Query: 121 PVDFNFYKTFWSLQ 134
            +DFNFYKTFWSLQ
Sbjct: 213 SIDFNFYKTFWSLQ 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487131|ref|XP_002264619.2| PREDICTED: THO complex subunit 1-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/134 (94%), Positives = 130/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           IVLYLCEKEHVEGGMIFQLLEDLTEMSTM+NCKDIF YIESKQDILGK ELFARGKLVML
Sbjct: 87  IVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKDIFAYIESKQDILGKQELFARGKLVML 146

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKD P+GI
Sbjct: 147 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPEGI 206

Query: 121 PVDFNFYKTFWSLQ 134
            +DFNFYKTFWSLQ
Sbjct: 207 SIDFNFYKTFWSLQ 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087837|emb|CBI35093.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/134 (94%), Positives = 130/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           IVLYLCEKEHVEGGMIFQLLEDLTEMSTM+NCKDIF YIESKQDILGK ELFARGKLVML
Sbjct: 99  IVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKDIFAYIESKQDILGKQELFARGKLVML 158

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKD P+GI
Sbjct: 159 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPEGI 218

Query: 121 PVDFNFYKTFWSLQ 134
            +DFNFYKTFWSLQ
Sbjct: 219 SIDFNFYKTFWSLQ 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087823|emb|CBI35079.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/134 (94%), Positives = 130/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           IVLYLCEKEHVEGGMIFQLLEDLTEMSTM+NCKDIF YIESKQDILGK ELFARGKLVML
Sbjct: 99  IVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKDIFAYIESKQDILGKQELFARGKLVML 158

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKD P+GI
Sbjct: 159 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPEGI 218

Query: 121 PVDFNFYKTFWSLQ 134
            +DFNFYKTFWSLQ
Sbjct: 219 SIDFNFYKTFWSLQ 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578237|ref|XP_002529986.1| nuclear matrix protein, putative [Ricinus communis] gi|223530509|gb|EEF32391.1| nuclear matrix protein, putative [Ricinus communis]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/134 (94%), Positives = 130/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           +VL+LCE+EHVEGGMIFQLLEDLTEMSTMKNC+DIFGYIESKQDILGK ELFARGKLVML
Sbjct: 87  VVLHLCEREHVEGGMIFQLLEDLTEMSTMKNCQDIFGYIESKQDILGKQELFARGKLVML 146

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct: 147 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPAGI 206

Query: 121 PVDFNFYKTFWSLQ 134
            VDFNFYKT WSLQ
Sbjct: 207 SVDFNFYKTLWSLQ 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445104|ref|XP_004140313.1| PREDICTED: THO complex subunit 1-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/134 (94%), Positives = 130/134 (97%)

Query: 1   IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
           IVLYLCEKEHVEGGMIFQLLEDLTEMST++NCKDIFGYIESKQDILGK ELFARGKLVML
Sbjct: 86  IVLYLCEKEHVEGGMIFQLLEDLTEMSTLRNCKDIFGYIESKQDILGKQELFARGKLVML 145

Query: 61  RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
           RTCNQLLRRLSKA+DVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEK PPDG 
Sbjct: 146 RTCNQLLRRLSKASDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKQPPDGF 205

Query: 121 PVDFNFYKTFWSLQ 134
            +DFNFYKTFWSLQ
Sbjct: 206 SIDFNFYKTFWSLQ 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2178183	599	THO1 "AT5G09860" [Arabidopsis	1.0	0.223	0.962	6.5e-67
WB|WBGene00020172	665	thoc-1 [Caenorhabditis elegans	0.746	0.150	0.44	4e-20
UNIPROTKB|E2RNV0	657	THOC1 "Uncharacterized protein	0.716	0.146	0.427	4.5e-20
UNIPROTKB|Q96FV9	657	THOC1 "THO complex subunit 1"	0.716	0.146	0.427	4.5e-20
MGI|MGI:1919668	657	Thoc1 "THO complex 1" [Mus mus	0.716	0.146	0.427	4.5e-20
UNIPROTKB|I3LE05	662	THOC1 "Uncharacterized protein	0.716	0.145	0.427	4.6e-20
UNIPROTKB|D4ABL0	657	Thoc1 "THO complex subunit 1"	0.716	0.146	0.427	5.7e-20
UNIPROTKB|F1MJV3	660	THOC1 "Uncharacterized protein	0.716	0.145	0.427	5.8e-20
FB|FBgn0037382	701	Hpr1 "Hpr1" [Drosophila melano	0.865	0.165	0.401	2.6e-17
ZFIN|ZDB-GENE-030826-9	655	thoc1 "THO complex 1" [Danio r	0.761	0.155	0.421	6.3e-17

TAIR|locus:2178183 THO1 "AT5G09860" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 129/134 (96%), Positives = 131/134 (97%)

Query:     1 IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
             +VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD+FGYIESKQDILGK ELFARGKLVML
Sbjct:    90 VVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVML 149

Query:    61 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
             RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct:   150 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGI 209

Query:   121 PVDFNFYKTFWSLQ 134
              VDFNFYKTFWSLQ
Sbjct:   210 SVDFNFYKTFWSLQ 223

GO:0003674 "molecular_function" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

WB|WBGene00020172 thoc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 225 (84.3 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
 Identities = 44/100 (44%), Positives = 61/100 (61%)

Query:    20 LEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFC 79
             L+DL EMS+++ CK IF  +E   +   +       +  +LR CN LLRRLS+  +  FC
Sbjct:    82 LQDLLEMSSIEECKQIFSIVEENMNEFKQPGFIETAQNNILRFCNDLLRRLSRTAETSFC 141

Query:    80 GRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDG 119
             GRI+ FL+ F PL+E+S VN  G FNT N T Y++   DG
Sbjct:   142 GRIMFFLSRFLPLTEKSGVNFMGHFNTLNVTNYDESETDG 181

GO:0000347 "THO complex" evidence=ISS

UNIPROTKB|E2RNV0 THOC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 41/96 (42%), Positives = 57/96 (59%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
             VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q96FV9 THOC1 "THO complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 41/96 (42%), Positives = 57/96 (59%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
             VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189

GO:0007165 "signal transduction" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000346 "transcription export complex" evidence=IDA

GO:0000347 "THO complex" evidence=IDA

GO:0000445 "THO complex part of transcription export complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006396 "RNA processing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1919668 Thoc1 "THO complex 1" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 41/96 (42%), Positives = 57/96 (59%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
             VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO;RCA

GO:0007165 "signal transduction" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=RCA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

UNIPROTKB|I3LE05 THOC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
 Identities = 41/96 (42%), Positives = 57/96 (59%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    97 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 156

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
             VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   157 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 192

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|D4ABL0 Thoc1 "THO complex subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
 Identities = 41/96 (42%), Positives = 57/96 (59%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
             VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENITVF 189

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MJV3 THOC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
 Identities = 41/96 (42%), Positives = 57/96 (59%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    97 FVLLGDVLDCLPLDQCDTIFTFVERNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 156

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
             VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   157 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 192

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

FB|FBgn0037382 Hpr1 "Hpr1" [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 53/132 (40%), Positives = 73/132 (55%)

Query:    19 LLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVF 78
             LL D  ++ T+  C+ IF ++E   ++  +   F+  K  +LR CN LLRRLS+  + VF
Sbjct:   103 LLIDTFDVVTLDKCQKIFQFVEDMVEVWKEEIFFSSCKNNILRMCNDLLRRLSRTQNTVF 162

Query:    79 CGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPD--------------GIP--V 122
             CGRI +FL+ FFP SERS +NI   FN  N T+Y  D  D               IP  +
Sbjct:   163 CGRIQLFLSKFFPFSERSGLNIVSEFNLDNFTEYGLDSKDHDESDNKELEDTAEDIPLKI 222

Query:   123 DFNFYKTFWSLQ 134
             D++ Y  FWSLQ
Sbjct:   223 DYDLYCKFWSLQ 234

GO:0005654 "nucleoplasm" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=NAS

GO:0031990 "mRNA export from nucleus in response to heat stress" evidence=IMP

GO:0000347 "THO complex" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-030826-9 thoc1 "THO complex 1" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 43/102 (42%), Positives = 60/102 (58%)

Query:    17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
             F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + 
Sbjct:    94 FLLLGDVLDCLPLDQCDKIFSFVEENVSTWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153

Query:    77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPD 118
             VFCGRI +FLA  FPLSE+S +N++  FN  N T + K+  D
Sbjct:   154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLDNITVFNKNEQD 195

GO:0007165 "signal transduction" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G09860	nuclear matrix protein-related; nuclear matrix protein-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; Has 266 Blast hits to 239 proteins in 102 species- Archae - 2; Bacteria - 0; Metazoa - 124; Fungi - 92; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source- NCBI BLink). (599 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G16790	unknown protein; EXPRESSED IN- shoot apex; CONTAINS InterPro DOMAIN/s- Tho complex subunit 7 (I [...] (233 aa)						•	•		0.991
	AT1G45233	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (452 aa)						•	•		0.991
	AT5G56130	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (315 aa)					•		•		0.991
	AT1G24706	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (1804 aa)					•	•	•		0.983
	AT2G19430	transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (367 aa)						•	•		0.982
	AT3G02950	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (236 aa)							•		0.958
	ATPDIL1-4	ATPDIL1-4 (PDI-LIKE 1-4); protein disulfide isomerase; Encodes a protein disulfide isomerase-li [...] (597 aa)					•				0.863
	AT5G42920	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (819 aa)							•		0.788

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam11957	494	pfam11957, efThoc1, THO complex subunit 1 transcri	3e-50

>gnl|CDD|221339 pfam11957, efThoc1, THO complex subunit 1 transcription elongation factor

 Score =  166 bits (422), Expect = 3e-50
 Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 10/144 (6%)

Query: 1   IVLYLCEKEH--VEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGK-L 57
            V  L + E    E G++F LLE+L +  T+  C+ +F Y+ES+++   K   F   K  
Sbjct: 9   FVSILSDNEQPFCEPGLLFFLLEELLDSLTIDGCRKLFDYLESRREWFKKGHFFQPVKNG 68

Query: 58  VMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDP- 116
           V+LRTCN+LLRRLS+  D VFCGRIL+FL+  FPLSE+S VN++G FNT N T ++++  
Sbjct: 69  VLLRTCNELLRRLSRTEDTVFCGRILIFLSQLFPLSEKSNVNLRGEFNTENVTTWDQEIG 128

Query: 117 ------PDGIPVDFNFYKTFWSLQ 134
                  D I VD+N Y  FWSLQ
Sbjct: 129 KDETSSSDSIDVDYNLYPIFWSLQ 152

The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1. The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG2491	674	consensus Nuclear matrix protein [Nuclear structur	100.0
PF11957	491	efThoc1: THO complex subunit 1 transcription elong	100.0

>KOG2491 consensus Nuclear matrix protein [Nuclear structure]

Probab=100.00  E-value=8.6e-54  Score=382.06  Aligned_cols=133  Identities=48%  Similarity=0.850  Sum_probs=126.6

Q ss_pred             eeeecccCcccchhHHHHHHHHhcccCHHHHHHHHhhhhcchhhhhhhhhcccchhHHHHHHHHHHHHhcccCCcchhhH
Q 048387            2 VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGR   81 (134)
Q Consensus         2 ~l~~~~~~~~~~~~~f~lleDl~d~~ti~~c~~~f~~vEsr~~~~~~~~~~~~~kl~lLR~cN~LLRRLSks~dt~fcGR   81 (134)
                      |..++.+|+|+.++||++|+|++|++|+++|.+||+|||+|+..|++..++.+|||+||||||||||||||++||+||||
T Consensus        85 v~~~~~~~~cs~~~Pf~lLeDl~dm~tl~eCkkiF~yvE~~~~~~K~~~f~~~~kn~lLR~cNdLLRRLSrt~ntvFCGR  164 (674)
T KOG2491|consen   85 VINGVTEGICSASTPFVLLEDLLDMSTLDECKKIFTYVEKNVATWKSNTFFAAGKNVLLRMCNDLLRRLSRTQNTVFCGR  164 (674)
T ss_pred             HHHhhhHhhhcCCccHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHccchhhhcccchhHHHHHHHHHHHhhcccceehHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccccccccccccCCCcccccCCCCC--------------------CCccChHHHHhhhcCC
Q 048387           82 ILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPD--------------------GIPVDFNFYKTFWSLQ  134 (134)
Q Consensus        82 Il~FLs~~fpl~erSglN~~g~fn~~n~T~~e~~~~~--------------------~~~id~~~Y~~FWsLQ  134 (134)
                      |++|||++|||+||||+|++|+||++|||.|+..+.+                    .++|||++|++|||||
T Consensus       165 I~lfLsrfFPlsErSG~Nl~g~fN~~nvt~fg~~e~d~~~~~~e~~et~~~e~~~~~~ikvd~~lY~~FWSLQ  237 (674)
T KOG2491|consen  165 IQLFLSRFFPLSERSGLNLQGQFNLENVTVFGTNEQDSTLGDVEEGETGDEEAPTTCSIKVDYNLYRKFWSLQ  237 (674)
T ss_pred             HHHHHHHhCCchhccccchhcccccccceecccccccccccccCCCCcccccCCCcccccccHHHHHHHHHHH
Confidence            9999999999999999999999999999999876421                    2679999999999998

>PF11957 efThoc1: THO complex subunit 1 transcription elongation factor; InterPro: IPR021861 The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences

Probab=100.00  E-value=1.2e-50  Score=353.04  Aligned_cols=134  Identities=49%  Similarity=0.905  Sum_probs=125.2

Q ss_pred             CeeeecccCc--ccchhHHHHHHHHhcccCHHHHHHHHhhhhcchhhhhhhhhcccchhH-HHHHHHHHHHHhcccCCcc
Q 048387            1 IVLYLCEKEH--VEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLV-MLRTCNQLLRRLSKANDVV   77 (134)
Q Consensus         1 i~l~~~~~~~--~~~~~~f~lleDl~d~~ti~~c~~~f~~vEsr~~~~~~~~~~~~~kl~-lLR~cN~LLRRLSks~dt~   77 (134)
                      |++++++.+.  |++++||.|+||+||++||+.|+.+|+|||+|+++|+++.++.+||+. +|||||+|||||||++|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~f~L~edl~d~~ti~~c~~~F~y~Esr~~~~~~~~~~~~~k~~~lLR~cN~LLrRLSrt~~~~   88 (491)
T PF11957_consen    9 LVLILSENEISPCDWALPFFLLEDLLDSLTIPDCEKVFWYVESRRERFKAGNFFQRGKNLVLLRMCNELLRRLSRTQDTV   88 (491)
T ss_pred             HHHHHHHhcccccccccHHHHHHHHHhhCcHHHHHHHHHHHhccHHHHhcccccccCcccccHHHHHHHHHHHHhcccHH
Confidence            4678899999  999999999999999999999999999999999999999999999966 9999999999999999999


Q ss_pred             hhhHHHHHHHhhcCCCccccccccccccCCCcccccCCC--------CCCCccChHHHHhhhcCC
Q 048387           78 FCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDP--------PDGIPVDFNFYKTFWSLQ  134 (134)
Q Consensus        78 fcGRIl~FLs~~fpl~erSglN~~g~fn~~n~T~~e~~~--------~~~~~id~~~Y~~FWsLQ  134 (134)
                      |||||++|||++|||+||||+|++|+||++|+|.||.+.        .+..++||+||++||+||
T Consensus        89 fcGRi~~FLs~~fPl~ErSg~Nl~g~fn~~n~T~~~~~~~~~~~~~~~~~~~~D~~~Y~~FW~LQ  153 (491)
T PF11957_consen   89 FCGRILIFLSQLFPLSERSGVNLRGEFNVENVTTFEEQEEGEDEDADSDKMQIDYNLYPKFWSLQ  153 (491)
T ss_pred             HHHHHHHHHHHHCCCcccccCcccccccccccccccccccccCccCccccccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999211        234579999999999998

The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00