Citrus Sinensis ID: 048420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLDSSDKEEGDDSMIE
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccHHHHHHccccccccccccEEEEEcccccEEEEEEccEEEcccEEEEEEEEEEEcEEccccccccccccccccHHHHHHHHHHHccccccccccccccccccEEEccHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEEEEEEEEccccccccccccEEEEEEEccEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEccccccccccEEEEEEccccccccHHHHcccccccccEEEEEcccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEccccccccccHHHHHHHHHccEccccccccEEEEEEccEEEEEEEEEHHHHccEEEEEEEEEEEEccccHHHHHHHHHccccHHHHHHHHHHHHHccccHccEEEEEccccccEEEccHHHHHHHHHHHHccccEEEccccEEEEEccccccEEEEEEEEEEEEEccHccccccccEEEEEEEccEEEEEcccccEEEEccccHEccccccccccHHHcEEEEEEEEEccccccccEEEEEEcHHHccccccEEEEEEccccccccHHHHHccccccccEEEEEEcccHHHHHHHccccccHHHEcHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MVQAAGIFAVRKTvscckcgitmvsNASNMCVTCLKSEVDITESLqkhanitpcpkikLKLTVQKEVLEGVIVEQSDVVMSRNItcvnlvpgfmqtgpdhWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGevvpaqsrhekqlvsrgtksrnckckytCSVEISAisahnlgnlgpfVICTKvtnsialldpftlrhcyldadqywrspfkalhTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYaigydlheanqndielenykslvppdtikIKKSYKEknqrkhrkpnppklkplemevdgskcgadrekVNNEYEEFLRDLMASVtdkedvpsvpldylladldssdkeegddsmie
Flexible Loop (DISEMBL)
mvqaagifavrktvscCKCGITMVSNASNMCVTCLKSEVDITESLQkhanitpcpkikLKLTVQKEVLEGViveqsdvvmsRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGevvpaqsrhekqlvsrgtksrnckCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIelenykslvppdtIKIKksykeknqrkhrkpnppklkplemevdgskcgadreKVNNEYEEFLRDLMASvtdkedvpsVPLDYLladldssdkeegddsmie
Low Complexity Region (SEG)
MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPldylladldssdKEEGDDSMIE
Disordered region (IsUnstruct)
****AGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPA*************KSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLV****************************************************FLR*L*************PLDYLL*****************
Disordered Region (DISOPRED)
**************SCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHE*********SRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKK***************************************EYEEFLRDLMASVTDKEDVPSVPLDYLLADLDSS***********
Disordered Region (DISEMBL)
MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQ***************NCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKS************NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLDS************
Disordered Region (DISPRO)
*********VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD*****ADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLD*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLDSSDKEEGDDSMIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
Q55BF2	530	60S ribosomal export prot	yes	no	0.860	0.626	0.310	6e-51
Q6P2Z6	504	60S ribosomal export prot	yes	no	0.911	0.698	0.276	1e-42
Q99L48	503	60S ribosomal export prot	yes	no	0.930	0.713	0.272	7e-42
Q5RC82	503	60S ribosomal export prot	yes	no	0.930	0.713	0.270	2e-41
Q96D46	503	60S ribosomal export prot	yes	no	0.930	0.713	0.268	3e-41
Q5BLF0	505	60S ribosomal export prot	yes	no	0.940	0.718	0.275	2e-40
Q09817	498	60S ribosomal export prot	yes	no	0.862	0.668	0.282	2e-39
Q08DS5	503	60S ribosomal export prot	yes	no	0.922	0.707	0.276	5e-39
P38861	518	60S ribosomal export prot	yes	no	0.935	0.696	0.268	2e-38
Q6GNS3	504	60S ribosomal export prot	N/A	no	0.930	0.712	0.270	8e-38

>sp|Q55BF2|NMD3_DICDI 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1

 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 206/445 (46%), Gaps = 113/445 (25%)

Query: 11  RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
           +  + CC CG+ + +N SNMCV C+KS+VDITE + K   I  C                
Sbjct: 9   QANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIA 68

Query: 55  -----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV 79
                                               ++K+KLT+QKEV    I++Q    
Sbjct: 69  ELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQ---- 124

Query: 80  MSRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAPAR 118
               I  +  +    Q          D W++ VQL              +LI KH+A ++
Sbjct: 125 ----IFIIEFIVQGQQCDKCQKFEAKDTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQ 180

Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
              IK+   G++FFFS R+HA+KFVEF+  + P +++  +QL+S   ++     KYT SV
Sbjct: 181 TLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSV 240

Query: 179 EISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
           EI  +S           AH LGN+GP V+ TKV+N I  +DP TL    + A  +W SPF
Sbjct: 241 EIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPF 300

Query: 228 KALHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILG 268
           +AL + +QLVE+ VLDV +                       ND I   R+HLG++L  G
Sbjct: 301 RALSSYKQLVEFTVLDVNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPG 360

Query: 269 DYAIGYDLHEANQNDIELENY-KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
           D A+GYD+  +N  D +L    K+   PD + +KK+Y  KN  + ++    K  P E   
Sbjct: 361 DLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKNDFRFKRHWYFKEIPKEGIE 420

Query: 328 DGSKCGADREKVNNEYEEFLRDLMA 352
           +  K   D  ++  + EEFLR++ A
Sbjct: 421 NPKKFEID--QMERDREEFLREIEA 443

Acts as an adapter for the xpo1-mediated export of the 60S ribosomal subunit.
Dictyostelium discoideum (taxid: 44689)

>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 210/488 (43%), Gaps = 136/488 (27%)

Query: 13  TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
            + CC+CGI +  N +NMCV+CL+ +VDI+E + K  ++  C                  
Sbjct: 14  NILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCAL 73

Query: 56  -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
                                              ++K+KLT+QKEV+ G I++Q  VV 
Sbjct: 74  ESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVD 133

Query: 80  -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
            + ++  C +          D W A VQ+              + I KH       ++K+
Sbjct: 134 YIVQSQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKE 190

Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
           +  G++F+++ + HA K VEF+   VP + +  ++L+S    +     K T SVEI  + 
Sbjct: 191 IHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVC 250

Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
                      A +LGN+    IC +VT++I L+DP TL+   +D + YWRSPF +L   
Sbjct: 251 KDNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHP 310

Query: 234 RQLVEYIVLDVKVASTE----------NDTILST-----------------RTHLGHLLI 266
           +QL E+IV+D  +              N  IL+                  RTHLGHLL 
Sbjct: 311 KQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQYHCRTHLGHLLN 370

Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
            GD  +G+DL   N ND  +        PD + IKKSY    +++ R     KLK +E +
Sbjct: 371 PGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRTKRQRRRN---WKLKEIERD 427

Query: 327 VDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDY 367
            +G     +R     +Y++FL DL                   + S TD+E  P + L  
Sbjct: 428 REGMDTDDER-----QYQDFLEDLEEDEVIRKNVNIYKNANLPVESDTDEEGAPRISLAE 482

Query: 368 LLADLDSS 375
           +L DL  S
Sbjct: 483 MLEDLHIS 490

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Xenopus tropicalis (taxid: 8364)

>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 212/495 (42%), Gaps = 136/495 (27%)

Query: 14  VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
           + CC+CG+ +  N +N+CV CL+S+VDI++ + K  +I+ C                   
Sbjct: 15  ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74

Query: 56  ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
                                             ++K+KLT+QKEV+ G I++Q  VV  
Sbjct: 75  SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134

Query: 80  MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
           + ++  C +          D W A +Q+              +LI K+       +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191

Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
             G++F++S + HA K VEF+  +VP + +  ++L+S+   S     K T SVEI  I  
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251

Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
                     A +LGN+    IC +VT++I L+DP TL+   +D + +W  PF +L   +
Sbjct: 252 DNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311

Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
           QL E+IV++                            K +    D     RTHLGHLL  
Sbjct: 312 QLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFCRTHLGHLLNP 371

Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
           GD  +G+DL   N ND  +    S   PD + IKKSY    +++ R     KLK  E+  
Sbjct: 372 GDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 426

Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
           D      D E+   +Y++FL DL                   + S TD E  P + L  +
Sbjct: 427 DRENMDTDDER---QYQDFLEDLEEDEAIRKHVNIYRDATIPVESDTDDEGAPRISLAEM 483

Query: 369 LADLDSSDKEEGDDS 383
           L DL  S    G++ 
Sbjct: 484 LEDLHISQDATGEEG 498

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 209/495 (42%), Gaps = 136/495 (27%)

Query: 14  VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
           + CC+CG+ +  N +N+CV CL+S+VDI++ + K  +I+ C                   
Sbjct: 15  ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74

Query: 56  ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
                                             ++K+KLTVQKEV+ G I++Q  VV  
Sbjct: 75  SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDY 134

Query: 80  MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
           + ++  C +          D W A +Q+              +LI K+       +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEI 191

Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
             G++F++S + HA K VEF+   VP + +  ++L+S+   S     K T SVEI  I  
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251

Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
                     A +LGN+    +C +VT++I L+DP TL+   +D   +W  PF +L   +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311

Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
           QL E+IV++                            K +    D     RTHLGHLL  
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371

Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
           GD  +G+DL   N ND  +    S   PD + IKKSY    +++ R     KLK L  E 
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428

Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
           +      +R     +Y++FL DL                   + S TD E  P + L  +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483

Query: 369 LADLDSSDKEEGDDS 383
           L DL  S    G++ 
Sbjct: 484 LEDLHISQDATGEEG 498

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Pongo abelii (taxid: 9601)

>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)

Query: 14  VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
           + CC+CG+ +  N +N+CV CL+S+VDI++ + K  +I+ C                   
Sbjct: 15  ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74

Query: 56  ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
                                             ++K+KLT+QKEV+ G I++Q  VV  
Sbjct: 75  SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134

Query: 80  MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
           + ++  C +          D W A +Q+              +LI K+       +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191

Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
             G++F++S + HA K VEF+   VP + +  ++L+S+   S     K T SVEI  I  
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251

Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
                     A +LGN+    +C +VT++I L+DP TL+   +D   +W  PF +L   +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311

Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
           QL E+IV++                            K +    D     RTHLGHLL  
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371

Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
           GD  +G+DL   N ND  +    S   PD + IKKSY    +++ R     KLK L  E 
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428

Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
           +      +R     +Y++FL DL                   + S TD E  P + L  +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483

Query: 369 LADLDSSDKEEGDDS 383
           L DL  S    G++ 
Sbjct: 484 LEDLHISQDATGEEG 498

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 207/501 (41%), Gaps = 138/501 (27%)

Query: 14  VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
           + CC CG+ +  N +NMCV+CL+++VDI+E + K   I  C                   
Sbjct: 15  ILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCALE 74

Query: 55  ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMS 81
                                             +IK+KLT+QKEV+ G I++Q      
Sbjct: 75  SRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQV----- 129

Query: 82  RNITCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
              T   +V G M          D W A VQ+              +LI KH       +
Sbjct: 130 --FTVEFVVQGQMCEDCHRVEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVR 187

Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
           IK++  GI+F+++ + HA K V+F+   VP +S+  ++L+S    S     K T SVEI 
Sbjct: 188 IKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIV 247

Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
            +            A +LGN+G   +C +VT+SI L+DP TL+   +D   +WR PF +L
Sbjct: 248 PVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSL 307

Query: 231 HTSRQLVEYI---------------------------VLDVKVASTENDTILSTRTHLGH 263
            + RQL E+I                           V   K +  ++      RT +GH
Sbjct: 308 CSPRQLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQYHCRTFMGH 367

Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
           LL +GD  +G+D   AN ND  L        PD + IKKSY   ++ K  +    KLK +
Sbjct: 368 LLNIGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSY---DRMKRARKRVWKLKEM 424

Query: 324 EMEVDGSKCGADREKVNNEYE-----------EFLRD-----LMASVTDKEDVPSVPLDY 367
           + E D +    +R+      +              RD     +  S TD +  P + L  
Sbjct: 425 DREKDAADTDDERQYTEFLEDLEEDEMLRKNINIFRDASKIPVEESDTDDDGAPRISLAE 484

Query: 368 LLADLDSSDKE--EGDDSMIE 386
           +L DL  SD    EG D M +
Sbjct: 485 MLEDLSLSDATGGEGADMMTD 505

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Danio rerio (taxid: 7955)

>sp|Q09817|NMD3_SCHPO 60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nmd3 PE=3 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 189/435 (43%), Gaps = 102/435 (23%)

Query: 10  VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------- 55
           +  T+ CC+CG+    NA+ MC+ C+K   DIT  + + + +  C               
Sbjct: 18  IASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMI 77

Query: 56  -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
                                                +IK+KLTVQKE     I++QS  
Sbjct: 78  APLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQ 137

Query: 79  V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
           V     N  C +    +    P  W A  Q+              ++I KH A      I
Sbjct: 138 VEFYVNNTQCPDCARTYT---PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNI 194

Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
           K+   GI+F+F  R+HA+K VEF+  VVP + +  ++L+S   KS     K+T S+EI  
Sbjct: 195 KETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVP 254

Query: 183 ISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
           I   +L           GN+   V+CTKV  +I  LDP TL+ C +    YWR+PF AL 
Sbjct: 255 ICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALA 314

Query: 232 TSRQLVEYIVLDVK----------------VASTENDTILSTRTHLGHLLILGDYAIGYD 275
              +L E+IV DV                 + S++  T L TRTHLG +L  G+  + Y 
Sbjct: 315 DIPELTEFIVADVDLLGPTNGKYALADVELIKSSDGSTHL-TRTHLGGILNAGNTVLAYH 373

Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGAD 335
           L   N N+   +  +    P+ + +KK+Y +  ++K+R     +LK + M+        D
Sbjct: 374 LAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ-TKKKNRN---WRLKTIGMQKAEDVKKQD 429

Query: 336 REKVNNEYEEFLRDL 350
            E+   +YE FL++L
Sbjct: 430 IERQERDYELFLQNL 444

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 207/492 (42%), Gaps = 136/492 (27%)

Query: 14  VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
           + CC CG+ +  N +N+CV CL+S+VDI++ + K  +I+ C                   
Sbjct: 15  ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALE 74

Query: 56  ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
                                             ++K+KLT+QKEV+ G I++Q  VV  
Sbjct: 75  SRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134

Query: 80  MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
           + +   C +          D W A VQ+              +LI K+       +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191

Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
             G++F++S + HA K VEF+   VP + +  ++L+S+   S     K T SVEI  I  
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251

Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
                     A +LGN+    +C +VT+ I L+DP TL+   +D + +W  PF +L   +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311

Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
           QL E+IV++                            K +    D     RTHLGHLL  
Sbjct: 312 QLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371

Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
           GD  +G+DL   N ND  +   KS   PD + IKKSY    +++ R     KLK  E+  
Sbjct: 372 GDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRRN---WKLK--ELAR 426

Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
           D      D E+   +Y++FL DL                   + S TD E  P + L  +
Sbjct: 427 DRENTDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483

Query: 369 LADLDSSDKEEG 380
           L DL  S    G
Sbjct: 484 LEDLHISQDATG 495

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|P38861|NMD3_YEAST 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 139/500 (27%)

Query: 13  TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
           T+ CC CG  +  S    MC  C+K  VDIT+ + + ANI+ C                 
Sbjct: 16  TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75

Query: 56  -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
                                              +I++KLTVQ E +   I++Q+  V 
Sbjct: 76  LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135

Query: 80  -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
            +   + C +    +     + W A VQ+              +LI KH+A      I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192

Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
              G++FF++ ++HAVK ++F+  VVP + +  ++L+S+ T +     K++ SVEI  I 
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252

Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
                      A ++GN+  FV+C+K++N++  +DP TL+   L    YWR+PF AL   
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312

Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
            QLVE+IVLDV                VA T     ND +   R+HLG +   GD  +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372

Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
            +  +N N    +       PD + +KK Y    QRK +K    KLK +  E   +D S 
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428

Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
               R      E+   +YE FL++L      ++ V                         
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488

Query: 361 PSVPLDYLLADLDSSDKEEG 380
           P + +D LL +LD    E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit. Unlikely to play a significant role in nonsense-mediated mRNA decay (NMD).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 211/495 (42%), Gaps = 136/495 (27%)

Query: 14  VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
           + CC+CGI +  N +NMCV CL+++VDI+E + K  ++  C                   
Sbjct: 15  ILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALE 74

Query: 56  ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
                                             ++K+KLT+QKEV+ G I++Q  VV  
Sbjct: 75  SRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134

Query: 80  MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
           + +   C +          D W A VQ+              + I KH       ++K++
Sbjct: 135 VVQAQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191

Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
             G++F+++ + H  K VEF+   VP + +  ++L+S    +     K T SVEI  +  
Sbjct: 192 HDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251

Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
                     A +LGN+    IC +VT++I L+DP TL+   +D + YWR PF +L   +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPK 311

Query: 235 QLVEYIVLDVKV----------ASTENDTILS-----------------TRTHLGHLLIL 267
           Q+ E+IV+D ++              N  +L+                  RTHLGHLL  
Sbjct: 312 QMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQYHCRTHLGHLLNP 371

Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
           GD  +G+DL   N ND  +        PD + IKKSY    +++ R     KLK  EM+ 
Sbjct: 372 GDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRRRN---WKLK--EMDR 426

Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
           D      D E+   +Y++FL DL                   + S TD+E  P + L  +
Sbjct: 427 DREGMDTDDER---QYQDFLEDLEEDELLRKNVNIFKNANVPVESDTDEEGAPRISLAEM 483

Query: 369 LADLDSSDKEEGDDS 383
           L DL  S    G++ 
Sbjct: 484 LEDLHISQDATGEEG 498

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
224080157	511	predicted protein [Populus trichocarpa]	0.994	0.751	0.469	1e-115
225430590	510	PREDICTED: 60S ribosomal export protein	0.994	0.752	0.488	1e-114
255585695	511	nonsense-mediated mRNA decay protein, pu	1.0	0.755	0.483	1e-114
224079509	511	predicted protein [Populus trichocarpa]	0.953	0.720	0.470	1e-111
147798057	594	hypothetical protein VITISV_003522 [Viti	0.937	0.609	0.481	1e-111
449451509	505	PREDICTED: 60S ribosomal export protein	0.989	0.756	0.473	1e-103
449504862	505	PREDICTED: 60S ribosomal export protein	0.989	0.756	0.471	1e-103
356539804	510	PREDICTED: 60S ribosomal export protein	0.989	0.749	0.452	6e-94
356569760	510	PREDICTED: 60S ribosomal export protein	0.968	0.733	0.439	4e-93
357460773	505	60S ribosomal export protein NMD3 [Medic	0.961	0.734	0.428	1e-87

>gi|224080157|ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/513 (46%), Positives = 301/513 (58%), Gaps = 129/513 (25%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M + AG+F V +T+    CCKCGI M  NA+NMCV CL+SEVDITE L+K+  +  CP  
Sbjct: 1   MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60

Query: 56  --------------------------------------------------KIKLKLTVQK 65
                                                             +IKL++ VQK
Sbjct: 61  DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120

Query: 66  EVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------EL 109
           EVL G I+EQ+ V+  + ++  C +     +Q  PD W A VQL              +L
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTR--VQANPDQWVAGVQLRQHVAHRRTFFYLEQL 178

Query: 110 IQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRN 169
           I KHDA ARA KIK+MDHGI+FFF+ RSH VKFV+FVG+V P +SR++KQLVS  TKS N
Sbjct: 179 ILKHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNN 238

Query: 170 CKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
              K+T SVEIS I            A +LGNLGP VIC+KVTNSIALLDPFTLRHC+LD
Sbjct: 239 YNYKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLD 298

Query: 219 ADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTIL 255
           ADQYWR+PFK+L TSRQLVEYIV DV   S E                       NDT+ 
Sbjct: 299 ADQYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMF 358

Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
           + +THLGH+L  GDYA+GYDLH AN ND+EL+ YK+LV P+ I +KKSY+EK QRK  KP
Sbjct: 359 NIKTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKP 418

Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MAS 353
              KLK L MEVD ++   D+EK+N+EYE+FLRDL                      MAS
Sbjct: 419 RSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMAS 478

Query: 354 VTDKEDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
           +TD ED+PS+PL+ LLADL+ +D E+ D+ M E
Sbjct: 479 MTDGEDIPSIPLEELLADLEINDAEDEDEGMGE 511

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430590|ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/512 (48%), Positives = 301/512 (58%), Gaps = 128/512 (25%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M + AG+F V +TV    CCKCGI M  NA+NMCV CL+SE+DITE LQKH  I  CP  
Sbjct: 1   MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPEC 60

Query: 56  -------------------------------------------------KIKLKLTVQKE 66
                                                            +IK+KL VQKE
Sbjct: 61  DTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 120

Query: 67  VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
           VL G I+EQ+ +V  + +   C +     +Q  PD W A+VQL              +LI
Sbjct: 121 VLNGAILEQAYIVEFVQQEHMCESC--SRVQANPDQWVASVQLRQHVPHRRTFFYLEQLI 178

Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
            +HDA  RA KIK+MD GI+FFF+ RSH VKFVEF+G+V P++SRH+KQLVS  TKS N 
Sbjct: 179 LRHDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNY 238

Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
             KYT SVEI  I            A +LGNLGP VICTKV+N+IALLDPFTLRHC+LDA
Sbjct: 239 NYKYTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHCFLDA 298

Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
           DQYWRS FKAL +SRQLVEYIVLDV++ S+E                       NDTI +
Sbjct: 299 DQYWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFN 358

Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
            RTHLGHLL  GD+A+GYD++ AN ND+ELE Y+  V P+ I IKKSY+EK QRK  KP 
Sbjct: 359 IRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPR 418

Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASV 354
             KLK L MEVD SK  AD+EK+N EYE FLRDL                      MAS+
Sbjct: 419 SWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASM 478

Query: 355 TDKEDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
           TD ED+PSVPL+ LLADLD S++E+GD SM E
Sbjct: 479 TDGEDLPSVPLEELLADLDLSEEEDGDVSMRE 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585695|ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis] gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/511 (48%), Positives = 287/511 (56%), Gaps = 125/511 (24%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M + AG+F VR+T+    CCKCGI M  NA NMCV CL+SEVDITE L+K   I  CP  
Sbjct: 1   MAEEAGMFMVRQTIGSVLCCKCGIPMQPNAVNMCVKCLRSEVDITEGLKKRVIIKHCPEC 60

Query: 56  --------------------------------------------------KIKLKLTVQK 65
                                                             +IKL+  VQK
Sbjct: 61  DTYLQPPYTRIKAQLESKELMTFCVRTLDLKHAGVTLVHAEFIWTEPHSKRIKLRCRVQK 120

Query: 66  EVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQ 111
           EV  G ++EQS +V       +      +Q  PD W A+VQL              +LI 
Sbjct: 121 EVHRGAVLEQSYIVEFVQQESMCESCSRVQANPDQWVASVQLRQHVSHRRTFFYLEQLIL 180

Query: 112 KHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCK 171
           KHDA ARA KIK+MD GI+FFF  RSH VKFVEF+G+V P +SRH+KQLVS   KS N  
Sbjct: 181 KHDAAARAIKIKQMDQGIDFFFGNRSHGVKFVEFLGKVAPVRSRHDKQLVSHDPKSNNYN 240

Query: 172 CKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDAD 220
            KYT SVEIS I            A +LGNLGP VICTKVTNSIALLDP TLRHCYLD D
Sbjct: 241 YKYTFSVEISPICREDLVCLPPKVAVSLGNLGPLVICTKVTNSIALLDPLTLRHCYLDGD 300

Query: 221 QYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILST 257
           QYWRS FK+L TSRQLVEYIVLDV + S E                       NDTI   
Sbjct: 301 QYWRSSFKSLLTSRQLVEYIVLDVDIISPEVNIGSSKYAMAEVQVARLSDFGKNDTIFFI 360

Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
           +THLGH+L  GD A+GYDL+ AN NDIEL+ YK LV P+ I IKKSY+EK QRK  KP  
Sbjct: 361 KTHLGHILKPGDQALGYDLYGANSNDIELDKYKGLVLPEAILIKKSYEEKRQRKRGKPRA 420

Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVT 355
            KLK LEMEVD S+   D+EK++ EYE+FLRDL                      MASVT
Sbjct: 421 WKLKSLEMEVDDSRGRNDQEKMDTEYEQFLRDLEENAELRFNVSLYRNKEYQPSEMASVT 480

Query: 356 DKEDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
           D EDVPS+PL+ LLADLD S+ E+  D M E
Sbjct: 481 DGEDVPSIPLEELLADLDISEMEDAADDMRE 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079509|ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/497 (47%), Positives = 290/497 (58%), Gaps = 129/497 (25%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M + AG+F V +T+    CCKCGI M  NA+NMCV CL+SEVDITE L+K+  +  CP  
Sbjct: 1   MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60

Query: 56  --------------------------------------------------KIKLKLTVQK 65
                                                             +IKL++ VQK
Sbjct: 61  DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120

Query: 66  EVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------EL 109
           EVL G I+EQ+ V+  + ++  C +     +Q  PD W A VQL              +L
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTR--VQANPDQWVAGVQLRQHVAHRRTFFYLEQL 178

Query: 110 IQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRN 169
           I KHDA ARA KIK+MDHGI+FFF+ RSH VKFV+FVG+V P +SR++KQLVS  TKS N
Sbjct: 179 ILKHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNN 238

Query: 170 CKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
              K+T SVEIS I            A +LGNLGP VIC+KVTNSIALLDPFTLRHC+LD
Sbjct: 239 YNYKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLD 298

Query: 219 ADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTIL 255
           ADQYWR+PFK+L TSRQLVEYIV DV   S E                       NDT+ 
Sbjct: 299 ADQYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMF 358

Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
           + +THLGH+L  GDYA+GYDLH AN ND+EL+ YK+LV P+ I +KKSY+EK QRK  KP
Sbjct: 359 NIKTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKP 418

Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MAS 353
              KLK L MEVD ++   D+EK+N+EYE+FLRDL                      MAS
Sbjct: 419 RSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMAS 478

Query: 354 VTDKEDVPSVPLDYLLA 370
           +TD ED+PS+PL+ LLA
Sbjct: 479 MTDGEDIPSIPLEELLA 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798057|emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/490 (48%), Positives = 283/490 (57%), Gaps = 128/490 (26%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M + AG+F V +TV    CCKCGI M  NA+NMCV CL+SE+DITE LQKH  I  CP  
Sbjct: 1   MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPEC 60

Query: 56  -------------------------------------------------KIKLKLTVQKE 66
                                                            +IK+KL VQKE
Sbjct: 61  DTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 120

Query: 67  VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
           VL G I+EQ+ +V  + +   C +     +Q  PD W A+VQL              +LI
Sbjct: 121 VLNGAILEQAYIVEFVQQEHMCESC--SRVQANPDQWVASVQLRQHVPHRRTFFYLEQLI 178

Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
            +HDA  RA KIK+MD GI+FFF+ RSH VKFVEF+G+V P++SRH+KQLVS  TKS N 
Sbjct: 179 LRHDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNY 238

Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
             KYT SVEI  I            A +LGNLGP VICTKV+N+IALLDPFTLRHC+LDA
Sbjct: 239 NYKYTFSVEICPICREDLICLPPKVAVSLGNLGPVVICTKVSNNIALLDPFTLRHCFLDA 298

Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
           DQYWRS FKAL +SRQLVEYIVLDV++ S+E                       NDTI +
Sbjct: 299 DQYWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFN 358

Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
            RTHLGHLL  GD+A+GYD++ AN ND+ELE Y+  V P+ I IKKSY+EK QRK  KP 
Sbjct: 359 IRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPR 418

Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASV 354
             KLK L MEVD SK  AD+EK+N EYE FLRDL                      MAS+
Sbjct: 419 SWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASM 478

Query: 355 TDKEDVPSVP 364
           TD ED+PSVP
Sbjct: 479 TDGEDLPSVP 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451509|ref|XP_004143504.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/509 (47%), Positives = 291/509 (57%), Gaps = 127/509 (24%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M    G+F+V++T+    CCKCGI M  NA+NMCV CL SEVDITE LQK   I  CP  
Sbjct: 1   MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 56  -------------------------------------------------KIKLKLTVQKE 66
                                                            +IK+KL VQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 67  VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
           VL+G I+EQS V   + ++  C +     +Q  PD W A+VQL              +LI
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESC--SRIQANPDQWVASVQLRQHVPHRRTFFFLEQLI 178

Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
            KH A A A +IK+MD GI+FFFS RSH VKFVEFVG+V P +SRH+KQLVS   KS   
Sbjct: 179 LKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIH 238

Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
             K+T SVEIS I            A +LGNLGP VICTKVTN+IALLDPFTLRHC+LDA
Sbjct: 239 NHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDA 298

Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
           DQYWR+ F++L TSRQLVEY+VLD++  STE                       NDT+ S
Sbjct: 299 DQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFS 358

Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
            +THLGH+L  GDYA+GYDL+ AN ND+ELE YK L  P+ I IKKSY+EK QRKH KP 
Sbjct: 359 IKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKHGKPR 418

Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM-------------------ASVTDK 357
             KLK L M+VD  K   D  K+N+EYE+FLRDL                    + +TD 
Sbjct: 419 SWKLKSLSMDVD-DKTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDG 477

Query: 358 EDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
           ED PSVPL+ LLADLD S+  EGDD+M E
Sbjct: 478 EDGPSVPLEELLADLDLSEG-EGDDAMNE 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504862|ref|XP_004162315.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/509 (47%), Positives = 290/509 (56%), Gaps = 127/509 (24%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
           M    G+F+V++T+    CCKCGI M  NA+NMCV CL SEVDITE LQK   I  CP  
Sbjct: 1   MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 56  -------------------------------------------------KIKLKLTVQKE 66
                                                            +IK+KL VQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 67  VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
           VL+G I+EQS V   + ++  C +     +Q  PD W A+VQL              +LI
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESC--SRIQANPDQWVASVQLRQHVPHRRTFFFLEQLI 178

Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
            KH A A A +IK+MD GI+FFFS RSH VKFVEFVG+V P +SRH+KQLVS   KS   
Sbjct: 179 LKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIH 238

Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
             K+T SVEIS I            A +LGNLGP VICTKVTN+IALLDPFTLRHC+LDA
Sbjct: 239 NHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDA 298

Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
           DQYWR+ F++L TSRQLVEY+VLD++  STE                       NDT+ S
Sbjct: 299 DQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFS 358

Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
            +THLGH+L  GDYA+GYDL+ AN ND+ELE YK L  P+ I IKKSY+EK QRK  KP 
Sbjct: 359 IKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPR 418

Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM-------------------ASVTDK 357
             KLK L M+VD  K   D  K+N+EYE+FLRDL                    + +TD 
Sbjct: 419 SWKLKSLSMDVD-DKTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDG 477

Query: 358 EDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
           ED PSVPL+ LLADLD S+  EGDD+M E
Sbjct: 478 EDGPSVPLEELLADLDLSEG-EGDDAMNE 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539804|ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 230/508 (45%), Positives = 289/508 (56%), Gaps = 126/508 (24%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK- 56
           M Q +G+F V +T+    CCKCGI M  NA+NMCV CL+SEVDITE L K   +  CP+ 
Sbjct: 7   MAQESGMFMVNQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66

Query: 57  ----------IKLKL-----------TVQKEV---------------------------- 67
                     +KL+L            +QK +                            
Sbjct: 67  ESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 126

Query: 68  ----LEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL-------------- 107
               L G I+EQS  V  + +   C +     +Q  PD W AAVQL              
Sbjct: 127 QKEVLNGAILEQSYPVEYVQQEHMCESC--SRVQANPDQWVAAVQLRQHVSHRRTFFYLE 184

Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
           +LI KH A A A +IK+M+ GI+FFFS RSH VKFVEF+G+V P +SRH+KQLVS   KS
Sbjct: 185 QLILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVSPVRSRHDKQLVSHDPKS 244

Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
            N   KYT SVEIS I            A +LGN+GP VICTKVTNSIALLDPFTLRHC+
Sbjct: 245 NNYNYKYTFSVEISPICREDLICLPPRVAVSLGNIGPLVICTKVTNSIALLDPFTLRHCF 304

Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDT 253
           +DADQYWR+ FK+L TSRQLVEYIVLDV+  S+E                       NDT
Sbjct: 305 IDADQYWRTSFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGKNDT 364

Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
           I + +THLGHLL  GDYA+GYDL+ AN ND+EL+ YK  + P+ I IKKSY+EK+Q+K  
Sbjct: 365 IFNIKTHLGHLLNPGDYALGYDLYGANSNDMELDKYKGHI-PEAILIKKSYEEKHQKKRG 423

Query: 314 KPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL---------MASVTDKEDVP--- 361
           KP   KLK LEMEVD  K   D +K+ +EYE+F++DL         ++   +KE  P   
Sbjct: 424 KPRSWKLKSLEMEVD-DKGRVDEDKMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPSDG 482

Query: 362 ---SVPLDYLLADLDSSDKEEGDDSMIE 386
              SVPL+ LLADLD S+ E+ +D+M E
Sbjct: 483 DESSVPLEELLADLDLSEHEDEEDNMTE 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569760|ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 216/492 (43%), Positives = 274/492 (55%), Gaps = 118/492 (23%)

Query: 1   MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK- 56
           M Q +G+F V +T+    CCKCGI M  NA+NMCV CL+SEVDITE L K   +  CP+ 
Sbjct: 7   MAQESGMFMVSQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66

Query: 57  ----------IKLKL-----------TVQKEV---------------------------- 67
                     +KL+L            +QK +                            
Sbjct: 67  ESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 126

Query: 68  ----LEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL-------------- 107
               L G I+EQS  V  + +   C +     +Q  PD W A+VQL              
Sbjct: 127 QKEVLNGAILEQSYPVEYVQQEHMCESC--SRVQANPDQWVASVQLRQHVSHRRTFFYLE 184

Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
           +LI KH A A A +IK+M+ GI+FFFS RSH VKFVEF+G+V P +SRH+KQLVS   KS
Sbjct: 185 QLILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVAPVRSRHDKQLVSHDPKS 244

Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
            N   KYT SVEIS I            A  LGN+GP VICTKVT+SIALLDPFTLRHC+
Sbjct: 245 NNYNYKYTFSVEISPICREDLICLPPRVAAGLGNIGPLVICTKVTSSIALLDPFTLRHCF 304

Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDT 253
           +DADQYWR+ FK+L TSRQLVEYIVLDV+  S+E                       NDT
Sbjct: 305 IDADQYWRASFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGKNDT 364

Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
           I + +THLGHLL  GDYA+GYDL+ AN ND+E + YK  + P+ I IKKSY+EK+Q+K  
Sbjct: 365 IFNIKTHLGHLLNPGDYALGYDLYGANSNDMEFDKYKGHI-PEAILIKKSYEEKHQKKRG 423

Query: 314 KPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLD 373
           KP   KLK LEMEVD  K   D++K+ +EYE+F++DL       E+ P +  +  L    
Sbjct: 424 KPRSWKLKSLEMEVD-DKGRVDQDKMVSEYEQFIQDL-------EENPEMRFNISLYRNK 475

Query: 374 SSDKEEGDDSMI 385
                +GDDS +
Sbjct: 476 EYKPSDGDDSSV 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460773|ref|XP_003600668.1| 60S ribosomal export protein NMD3 [Medicago truncatula] gi|355489716|gb|AES70919.1| 60S ribosomal export protein NMD3 [Medicago truncatula]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 220/514 (42%), Positives = 277/514 (53%), Gaps = 143/514 (27%)

Query: 7   IFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESL------------------ 45
           +F V +T+    CCKCGI M  NA+NMCV CL+SEVDITE L                  
Sbjct: 1   MFKVHQTIGSVLCCKCGIRMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECESYLQP 60

Query: 46  ----------------------QKHANITPCP--------------KIKLKLTVQKEVLE 69
                                 QK+ NI                  ++K+K++VQKEV  
Sbjct: 61  PRTWVKLQLESKELLTFCLKKLQKNMNINKAKLVNAEFIWTEPHSKRVKVKVSVQKEVYH 120

Query: 70  GVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKH 113
           G I+EQS  V  + ++  C +     +   PD W AAVQL              +LI +H
Sbjct: 121 GAILEQSYPVEYVQQDHMCESC--SRVAANPDQWIAAVQLRQHVSHRRTFYYLEQLILRH 178

Query: 114 DAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCK 173
            A ARA +IK+MDHGI+F+FS RSH +KFVEFVG+V P +SR +KQLVS  +KS N   K
Sbjct: 179 GAAARAIRIKQMDHGIDFYFSNRSHGIKFVEFVGKVAPVKSRSDKQLVSHDSKSNNYNYK 238

Query: 174 YTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQY 222
           YT SVEIS I           +A  LGN+GP VICTKVTNSIALLDP TL+  +LDA+QY
Sbjct: 239 YTFSVEISPICREDLICLPPKAAAILGNIGPIVICTKVTNSIALLDPLTLKFGFLDAEQY 298

Query: 223 WRSPFKALHTSRQLVEYIVL-------------------DVKVAST----ENDTILSTRT 259
           WR+ FK+L TSRQLVEYIVL                   D +VA      +NDT+ S RT
Sbjct: 299 WRTSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGTKYALADAQVARVSDFGKNDTMFSIRT 358

Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
           HLGHLL  GD A+GYDL+ AN ND+EL+ YK  + P+ + IKKSY EK     RK    K
Sbjct: 359 HLGHLLKPGDNALGYDLYAANSNDMELDRYKGNI-PEVVLIKKSYPEK-----RKTRSFK 412

Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVTDK 357
           LK + ME D  K   + +K + EYE FL++L                      +ASVTD 
Sbjct: 413 LKRIPMEAD-DKIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYQPSEVASVTDG 471

Query: 358 EDVPSVPLDYLLA---DLDSSDKE--EGDDSMIE 386
           E+ PSVP D LL    DLD S+ E  +G+D+M E
Sbjct: 472 EEAPSVPWDELLTGLEDLDLSEGEGDDGEDNMAE 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2044299	516	NMD3 "AT2G03820" [Arabidopsis	0.427	0.319	0.463	1.1e-53
DICTYBASE|DDB_G0271306	530	nmd3 "60S ribosomal export pro	0.487	0.354	0.371	1.6e-53
FB|FBgn0023542	521	Nmd3 "Nonsense-mediated mRNA 3	0.360	0.266	0.373	7.5e-41
UNIPROTKB|E1BTL9	504	NMD3 "Uncharacterized protein"	0.354	0.271	0.344	1.8e-38
CGD|CAL0001704	520	NMD3 [Candida albicans (taxid:	0.357	0.265	0.369	1.9e-38
SGD|S000001213	518	NMD3 "Protein involved in nucl	0.354	0.264	0.371	9e-37
ASPGD|ASPL0000044316	511	AN1711 [Emericella nidulans (t	0.357	0.270	0.369	3.3e-36
UNIPROTKB|G4N0U7	525	MGG_05817 "Nonsense-mediated m	0.357	0.262	0.369	6.5e-35
POMBASE|SPAC16C9.03	498	nmd3 "export adaptor Nmd3 (pre	0.497	0.385	0.357	1.7e-34
ZFIN|ZDB-GENE-050320-149	505	nmd3 "NMD3 homolog (S. cerevis	0.360	0.275	0.353	6.3e-30

TAIR|locus:2044299 NMD3 "AT2G03820" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
 Identities = 82/177 (46%), Positives = 112/177 (63%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI +HDA +RA +I+++D GI+FFF  +SHA  FVEF+ +VVP + R ++QLVS   KS
Sbjct:   178 QLILRHDAASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKS 237

Query:   168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
                  KYT SV+I  +            A  LGNLGP V+CTKV+++I LLDP TLR  +
Sbjct:   238 SLYNYKYTYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAF 297

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIG 273
             LDA QYWRS F++  TSRQLV+Y V DV+    E  T+   +  L ++ I  +  IG
Sbjct:   298 LDARQYWRSGFRSALTSRQLVKYFVFDVEPPVGEA-TVGGQKYALSYVQIARESDIG 353

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=IMP

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

DICTYBASE|DDB_G0271306 nmd3 "60S ribosomal export protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 333 (122.3 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
 Identities = 81/218 (37%), Positives = 124/218 (56%)

Query:    56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
             ++K+KLT+QKEV    I++Q  ++  + +   C +    F     D W++ VQL      
Sbjct:   105 RLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQC-DKCQKF--EAKDTWNSVVQLRQKVDH 161

Query:   108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
                     +LI KH+A ++   IK+   G++FFFS R+HA+KFVEF+  + P +++  +Q
Sbjct:   162 KRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQ 221

Query:   160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
             L+S   ++     KYT SVEI  +S           AH LGN+GP V+ TKV+N I  +D
Sbjct:   222 LISSDEQNNAANYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFID 281

Query:   209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
             P TL    + A  +W SPF+AL + +QLVE+ VLDV +
Sbjct:   282 PNTLHTGEISALTFWNSPFRALSSYKQLVEFTVLDVNL 319

GO:0043023 "ribosomal large subunit binding" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0000055 "ribosomal large subunit export from nucleus" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

FB|FBgn0023542 Nmd3 "Nonsense-mediated mRNA 3" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 7.5e-41, Sum P(3) = 7.5e-41
 Identities = 56/150 (37%), Positives = 86/150 (57%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI KH A      IK    G++FF++  +HA + V+F+  +VP +    K+L+S    S
Sbjct:   183 QLILKHKAHENTLGIKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHS 242

Query:   168 RNCKCKYTCSVEISAISA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
              N   KY  SVEI+ +S            H LGNL P V+  +V++SI L+DP T +   
Sbjct:   243 NNYNYKYNWSVEIAPVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAE 302

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
             L +  Y+R+PF+A+   +QLVEY+V+D+ V
Sbjct:   303 LTSQVYFRAPFEAVCNPKQLVEYVVMDIDV 332

GO:0003729 "mRNA binding" evidence=ISS

GO:0000055 "ribosomal large subunit export from nucleus" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1BTL9 NMD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 241 (89.9 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
 Identities = 51/148 (34%), Positives = 84/148 (56%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI KH       +IK++  G++F++S + HA K V+F+   VP++S+  ++L S    S
Sbjct:   174 QLILKHRLHQNTLRIKEIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDVHS 233

Query:   168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
                  K T SVEI  +            A +LGN+    +C +VT+++ L+DP TL+   
Sbjct:   234 NVYNYKSTFSVEIVPVCKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAE 293

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDV 244
             +D + YWR PF +L   +QL E+IV+D+
Sbjct:   294 IDGNTYWRHPFNSLFNPKQLEEFIVMDI 321

GO:0005730 "nucleolus" evidence=IEA

CGD|CAL0001704 NMD3 [Candida albicans (taxid:5476)]

 Score = 262 (97.3 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
 Identities = 55/149 (36%), Positives = 90/149 (60%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI KH+A      I++   G++FF++ ++HA K V+F+  V P + +  ++LVS    S
Sbjct:   180 QLILKHNAHVDTVSIQETKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHS 239

Query:   168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
              +   K++ SVEI+ I            AH++GN+   V+C K+TN+I  +DP TL+   
Sbjct:   240 GSSSYKFSYSVEIAPICRDDLVVLPKKLAHSMGNISRLVLCNKITNAIQFMDPNTLQTAD 299

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDVK 245
             L A  +WRSPF +L  + Q+VE+IVLD++
Sbjct:   300 LSAPVFWRSPFPSLLDATQMVEFIVLDIE 328

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IEA

SGD|S000001213 NMD3 "Protein involved in nuclear export of the large ribosomal subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 263 (97.6 bits), Expect = 9.0e-37, Sum P(3) = 9.0e-37
 Identities = 55/148 (37%), Positives = 89/148 (60%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI KH+A      I +   G++FF++ ++HAVK ++F+  VVP + +  ++L+S+ T +
Sbjct:   176 QLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHT 235

Query:   168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
                  K++ SVEI  I            A ++GN+  FV+C+K++N++  +DP TL+   
Sbjct:   236 GASTYKFSYSVEIVPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTAD 295

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDV 244
             L    YWR+PF AL    QLVE+IVLDV
Sbjct:   296 LSPSVYWRAPFNALADVTQLVEFIVLDV 323

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0043023 "ribosomal large subunit binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000044316 AN1711 [Emericella nidulans (taxid:162425)]

 Score = 255 (94.8 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
 Identities = 55/149 (36%), Positives = 89/149 (59%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--T 165
             +LI KH A      IK+  +GI+FFF+ R+HA  F++F+   VP +    +Q++S    T
Sbjct:   178 QLILKHKAHQNTINIKEAKNGIDFFFAQRNHAEAFIDFLHSAVPVEVTKSQQIISEDIHT 237

Query:   166 KSRNCKCKYT------CSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
              +++ K  Y+      C  ++ A+    A  LGN+ P ++C ++  SI+ LDP TL+   
Sbjct:   238 STKSYKFTYSAKIVPICKDDLVALPIKLAKQLGNISPLLLCNRIGTSISFLDPNTLQSAD 297

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDVK 245
             L++  YWRSPF +L  ++ LVE+IVLDV+
Sbjct:   298 LNSRIYWRSPFTSLAEAKDLVEFIVLDVE 326

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IEA

UNIPROTKB|G4N0U7 MGG_05817 "Nonsense-mediated mRNA decay protein 3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 253 (94.1 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
 Identities = 55/149 (36%), Positives = 86/149 (57%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI KH A      IK+   GI+FFFS R+ A KFV+F+   VP +++  ++L+S+   +
Sbjct:   186 QLILKHGAHRDTINIKEAKDGIDFFFSARNQAEKFVDFLHSSVPVRTKKSQELISQDIHT 245

Query:   168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
                  K+T  VE+  I            A  +GN+ P V+C ++  S+  LDP TL+   
Sbjct:   246 STKSYKFTFLVELIPICKEDLVVLPIKLAKQIGNISPLVLCHRIGTSVNFLDPATLQTAE 305

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDVK 245
             + A  YWR+PF+A+  S+ LVE+IV+DV+
Sbjct:   306 VSAPIYWRAPFRAIAESKDLVEFIVMDVE 334

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC16C9.03 nmd3 "export adaptor Nmd3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 293 (108.2 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 80/224 (35%), Positives = 111/224 (49%)

Query:    56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDH-WDAAVQL----- 107
             +IK+KLTVQKE     I++QS  V     N  C    P   +T   H W A  Q+     
Sbjct:   115 RIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQC----PDCARTYTPHIWKAVCQVRQKVL 170

Query:   108 ---------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEK 158
                      ++I KH A      IK+   GI+F+F  R+HA+K VEF+  VVP + +  +
Sbjct:   171 HKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSE 230

Query:   159 QLVSRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALL 207
             +L+S   KS     K+T S+EI  I   +L           GN+   V+CTKV  +I  L
Sbjct:   231 ELISEDFKSNTANYKFTYSIEIVPICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFL 290

Query:   208 DPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTEN 251
             DP TL+ C +    YWR+PF AL    +L E+IV DV +    N
Sbjct:   291 DPLTLQTCDMLPSIYWRTPFPALADIPELTEFIVADVDLLGPTN 334

GO:0000027 "ribosomal large subunit assembly" evidence=ISO

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-050320-149 nmd3 "NMD3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
 Identities = 53/150 (35%), Positives = 86/150 (57%)

Query:   108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
             +LI KH       +IK++  GI+F+++ + HA K V+F+   VP +S+  ++L+S    S
Sbjct:   174 QLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHS 233

Query:   168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
                  K T SVEI  +            A +LGN+G   +C +VT+SI L+DP TL+   
Sbjct:   234 NTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAE 293

Query:   217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
             +D   +WR PF +L + RQL E+I++D+ +
Sbjct:   294 VDGSTFWRHPFNSLCSPRQLEEFIIMDIDI 323

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_IV000391	hypothetical protein (511 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00180400	SubName- Full=Putative uncharacterized protein; (221 aa)						•			0.800
	eugene3.00061817	SubName- Full=Putative uncharacterized protein; (221 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_VI2910	SubName- Full=Putative uncharacterized protein; (221 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•			•		0.445
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•			•		0.442
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•			•		0.429

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
pfam04981	238	pfam04981, NMD3, NMD3 family	4e-24
COG1499	355	COG1499, NMD3, NMD protein affecting ribosome stab	5e-10

>gnl|CDD|218359 pfam04981, NMD3, NMD3 family

 Score = 98.9 bits (247), Expect = 4e-24
 Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 89/246 (36%)

Query: 16  CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK------------------- 56
           C +CG  +      +C  C +  VDITE + +   +  C                     
Sbjct: 1   CPRCGRPIEPLIDGLCPDCYRERVDITE-IPEELTVLVCRNCGRYLIPNRWVDAEESREL 59

Query: 57  ---------------------------------IKLKLTVQKEVLEGVIVEQS---DVVM 80
                                            IK+KLTVQ EV  G  ++Q+   +VV+
Sbjct: 60  LEICLKKLYKGLNKVKKVLVDAEFIWTEPHSKRIKVKLTVQGEVRGGTPLQQTFVVEVVV 119

Query: 81  SRNI--TCVNLVPGFMQTGPDHWDAAVQL------------------------ELIQKHD 114
           +R     C        +    +W+A VQ+                        +LI KHD
Sbjct: 120 NRQQCPDC-------SRIAGGYWEAIVQVRQKGRKLTEEEKKVAHKRTFLYLEQLILKHD 172

Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
           A A  + IK++  G++F+F  R+HA K V+F+  V+P + +  K+LV     +     ++
Sbjct: 173 AHAFISDIKEVKDGLDFYFGSRNHARKLVDFLSSVLPGKVKESKKLVGEDDDTGKKNYRF 232

Query: 175 TCSVEI 180
           T SV +
Sbjct: 233 TYSVRL 238

The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway. Length = 238

>gnl|CDD|224416 COG1499, NMD3, NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 45/309 (14%), Positives = 90/309 (29%), Gaps = 81/309 (26%)

Query: 13  TVSCCKCGITMVSNASNMCVTCLKS----------------------------------- 37
           T+ C +CG ++      +C  C                                      
Sbjct: 6   TILCVRCGRSVDPLIDGLCGDCYVETTPLIEIPDEVNVEVCRHCGAYRIRGRWVDEEGAN 65

Query: 38  ------EVDITESLQKHANITPCP---------KIKLKLTVQKE-VLEGVIVEQSDVV-- 79
                 E ++   L+K                 ++ +++T++    + G    Q   V  
Sbjct: 66  RLLEALEDEVLRRLEKVNEAVEVEFAFEEPKSRRLTVRVTIKGRGHVRGTPRTQLVEVTV 125

Query: 80  MSRNITC----------------VNLVPGFMQTGPDHWDAAVQ--LELIQKHDAPARATK 121
             R   C                V      +    +     V+  +   +K D  A  + 
Sbjct: 126 EVRRTLCPRCSRFTGGYYEAIVQVRAKGRELTEEEEEAFLFVEEIVLKRKKRDRMAFISD 185

Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI- 180
            ++   GI+ +   R+ A K   F+ E    + +  ++LV R   +     ++T SV I 
Sbjct: 186 TEEKKEGIDIYLGSRNAARKVARFILEKFGGEVKESEKLVGRDRFTGKRVYRFTYSVRIP 245

Query: 181 -----SAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
                  +S          V+   +   I +LD  T     +    Y R+  K      +
Sbjct: 246 EFRPGDIVSVRG----RQLVLVRSIGKGIVVLDLETGEPVEITWSVYKRNEGKVAVKEPR 301

Query: 236 LVEYIVLDV 244
           L + +V+  
Sbjct: 302 LKKAVVVSR 310

Length = 355

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
KOG2613	502	consensus NMD protein affecting ribosome stability	100.0
COG1499	355	NMD3 NMD protein affecting ribosome stability and	100.0
PF04981	236	NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 p	100.0

>KOG2613 consensus NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-131  Score=980.67  Aligned_cols=368  Identities=44%  Similarity=0.715  Sum_probs=343.0

Q ss_pred             ccCcCCCCC-eeeeecCCCCCCCCCcccchHhhhccccccccccceeEEeecCc--------------------------
Q 048420            4 AAGIFAVRK-TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK--------------------------   56 (386)
Q Consensus         4 ~~~~~~~~~-~ilCc~CG~~i~pn~~nmC~~Cl~~~vdItegIpk~~~i~~Cr~--------------------------   56 (386)
                      ++..+..++ +||||.||+||+||++|||++||+++||||+||||+++|.|||+                          
T Consensus         4 ~~~~p~~~~~~ILCCeCGvpi~Pn~anMC~~Clrs~VDITegipr~~~i~~Cr~CeRYlqPP~~Wi~a~leSrELLaicl   83 (502)
T KOG2613|consen    4 ESIDPNVQGATILCCECGVPIEPNPANMCVDCLRSEVDITEGIPRQATISFCRECERYLQPPKTWIRAELESRELLAICL   83 (502)
T ss_pred             cCCCccCCCcEEEEecCCCcCCCchHHHHHHHhheeeehhcCCcchhhhhhccccceecCCcHHHhhhhhccHHHHHHHH
Confidence            344444344 89999999999999999999999999999999999999999999                          


Q ss_pred             -------------------------eEEEEEEEEEeecCeeEEEEEEEEE--eeeccCCCCccccccCCCcchhhhhhH-
Q 048420           57 -------------------------IKLKLTVQKEVLEGVIVEQSDVVMS--RNITCVNLVPGFMQTGPDHWDAAVQLE-  108 (386)
Q Consensus        57 -------------------------ikVkltVqkEv~~g~ilqQ~~vVe~--~~~~C~~~~C~r~~a~~~~w~A~VQvR-  108 (386)
                                               ||||||||||+|+|+||||+|+|||  +++||||  |+|.+| +++|+|+|||| 
T Consensus        84 kklK~L~~VrLvDA~FVwTEpHSkRIkVKLTVq~E~~~~tilqQ~f~Vey~V~~~~C~D--C~R~ea-kdfW~a~vQvRQ  160 (502)
T KOG2613|consen   84 KKLKGLNKVRLVDANFVWTEPHSKRIKVKLTVQKEVFTNTILQQSFVVEYTVRNQQCPD--CARVEA-KDFWRALVQVRQ  160 (502)
T ss_pred             HhhcCcceeEEeccceEeccCCCceEEEEEEEEhhhcCCceeeeeEEEEEEEecccCch--hhhhhh-hHHHHHHHHHHh
Confidence                                     9999999999999999999999999  9999999  999998 89999999999 


Q ss_pred             -------------HHhhccccccccCeeeeCCceeEEecChhhHHHHHHhhccccCeEEeeeceeeccccCCCcceeEEE
Q 048420          109 -------------LIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT  175 (386)
Q Consensus       109 -------------lIlKh~a~~~~~~I~~~~dGlDFyf~~r~~A~k~v~fl~sv~P~~~k~S~qLis~D~~sn~~~yK~T  175 (386)
                                   +||||+||.++++|++.++||||||++++||+|||+||++++|+++|.|++|||||+|||+||||||
T Consensus       161 r~~hkrTF~YLEQLILKh~ah~~t~~Ik~~~~GlDFyy~~k~hA~kmVeFL~~vvP~ryk~se~LIS~D~hsn~ynYK~t  240 (502)
T KOG2613|consen  161 RAEHKRTFFYLEQLILKHNAHGNTINIKEVKDGLDFYYANKNHAVKMVEFLQTVVPIRYKVSERLISHDVHSNTYNYKFT  240 (502)
T ss_pred             hcccchhhHHHHHHHHhcchhhcccccccccCCcceeeccHHHHHHHHHHHHhhceeEEecchhhhhhhcccCcccceee
Confidence                         8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecee-----------hhccCCCCCeEEEEeeCCcEEEEcCCCCceeEeccccccccCCcccCCCCCceEEEEEee
Q 048420          176 CSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV  244 (386)
Q Consensus       176 ~SVeI~pic-----------a~~lG~i~~l~lc~kV~~~I~liDP~Tl~~~~l~~~~Ywr~pF~~l~~~~~LvefiVldi  244 (386)
                      |||||+|||           |++|||||||+||+||+++|+||||.|+|+++|++..|||+||++|++++||+||+|+|+
T Consensus       241 ~SVEIvPiCkDdlVcLpkkva~~lGNi~qlvvc~kVs~~I~llDP~tlq~adl~~s~yWr~pF~sl~~~kqL~ef~V~dv  320 (502)
T KOG2613|consen  241 YSVEIVPICKDDLVCLPKKVAQSLGNISQLVVCTKVSNTITLLDPRTLQTADLTGSVYWRAPFNSLCDPKQLTEFIVLDV  320 (502)
T ss_pred             eEEEEeeeccCceEEcCHHHHHhcCCccceEEEEEecCceEEeCCcceeeeecccceeecCcchhhcChhhheEEEEEEE
Confidence            999999999           999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccc----------------------cCCcEEEEEeecCCccCCCCeEeeecccccCCCchHhhccCCCCCCCeEEEec
Q 048420          245 KVAST----------------------ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKK  302 (386)
Q Consensus       245 e~~~~----------------------~nd~~~~~rTHLG~iL~~GD~vlGYdl~~~n~n~~~~~~~~~~~~PdviLVkK  302 (386)
                      ++.+.                      +||..+++||||||+|+|||+||||||+++|+||++||++..+.+||||||||
T Consensus       321 ~~v~~~~~~g~kh~l~dv~v~r~sd~g~nd~~~~~RtHLGhil~~gD~vlgydl~~~N~N~~~~d~~~~d~vPdvvlVkK  400 (502)
T KOG2613|consen  321 DPVGEAGGKGQKHALADVWVARSSDLGMNDKFHYARTHLGHILKPGDLVLGYDLANANLNDEEFDKLNIDGVPDVVLVKK  400 (502)
T ss_pred             ecccccCCccceeeeeeEEEEEcCccCcccceeeehhhccccCCCCCeeeeeeeccCccchhhhhhhcccCCCcEEEEEc
Confidence            98753                      67889999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhccCCCCCCccccccccccCCCCccchhhhHHHHHHHHHHHh-------------------ccCCC-CCCCCC
Q 048420          303 SYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM-------------------ASVTD-KEDVPS  362 (386)
Q Consensus       303 ~y~~~~~~~~~~~R~wkLk~l~~e~~~~~~~~~~~~~e~dye~Fl~dl~-------------------~~~~~-~~~~p~  362 (386)
                      +|+++    +++.|+||||+|++|.  ..++.+.++.++||++||+||+                   ++++| ++|+|+
T Consensus       401 ~y~r~----~r~~r~WKlK~l~~e~--~~~~~~~~~~~~eY~~FledlEEd~elr~~vnlyrd~~~~~~~d~d~~ed~p~  474 (502)
T KOG2613|consen  401 MYDRT----KRKSRNWKLKRLAMEM--SRGKNESERTEKEYELFLEDLEEDPELRQGVNLYRDKEKPTESDTDDAEDAPQ  474 (502)
T ss_pred             ccccc----chhccceehhhhhhhh--ccccccchhhHHHHHHHHHhhhcCHHHHhcceeeeccCCCCccccccccCCCC
Confidence            99843    2356999999999986  3466778889999999999992                   13333 488999


Q ss_pred             CChhhhhccCCCCCCCCC
Q 048420          363 VPLDYLLADLDSSDKEEG  380 (386)
Q Consensus       363 i~l~ellddl~~~~~~~~  380 (386)
                      |+|+||||||+++.+||+
T Consensus       475 i~ldElLedl~~~~~e~~  492 (502)
T KOG2613|consen  475 ITLDELLEDLKLSFEEDD  492 (502)
T ss_pred             CCHHHHHhhhhcchhhcc
Confidence            999999999988766444

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-51  Score=408.78  Aligned_cols=270  Identities=19%  Similarity=0.266  Sum_probs=246.0

Q ss_pred             CCCeeeeecCCCCCCCCCcccchHhhhccccccccccceeEEeecCc---------------------------------
Q 048420           10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK---------------------------------   56 (386)
Q Consensus        10 ~~~~ilCc~CG~~i~pn~~nmC~~Cl~~~vdItegIpk~~~i~~Cr~---------------------------------   56 (386)
                      ...+++||.||++++|+..+||.+|+..+..+. +||..+++.+|++                                 
T Consensus         3 ~~~~~~C~~CGr~~~~~~~~lC~dC~~~~~~~~-~ip~~~~v~~C~~Cga~~~~~~W~~~~~~~~~l~~~~~~~~~~~~~   81 (355)
T COG1499           3 DASTILCVRCGRSVDPLIDGLCGDCYVETTPLI-EIPDEVNVEVCRHCGAYRIRGRWVDEEGANRLLEALEDEVLRRLEK   81 (355)
T ss_pred             CCcccEeccCCCcCchhhccccHHHHhccCccc-cCCCceEEEECCcCCCccCCCcceeccccchHHHHHHHHHhhhhhh
Confidence            457899999999999999999999999966665 8999999999998                                 


Q ss_pred             ------------------eEEEEEEEEEeec-CeeEEEEEEEEE--eeeccCCCCccccccCCCcchhhhhhH-------
Q 048420           57 ------------------IKLKLTVQKEVLE-GVIVEQSDVVMS--RNITCVNLVPGFMQTGPDHWDAAVQLE-------  108 (386)
Q Consensus        57 ------------------ikVkltVqkEv~~-g~ilqQ~~vVe~--~~~~C~~~~C~r~~a~~~~w~A~VQvR-------  108 (386)
                                        +.++++|+++-.- |+.+||.+.|+|  ++.+||+  |+| ++ ++||+|+||||       
T Consensus        82 ~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~v~~~v~~~~Cp~--C~r-~~-~~y~eAivQvR~~~r~~~  157 (355)
T COG1499          82 VNEAVEVEFAFEEPKSRRLTVRVTIKGRGHVRGTPRTQLVEVTVEVRRTLCPR--CSR-FT-GGYYEAIVQVRAKGRELT  157 (355)
T ss_pred             hccccccceeeeccCCCceEEEEEEEEeeecCCCceeEEEEEEEEEEEeEChh--hhc-cc-cceeEEEEEEEeccCccc
Confidence                              6789999977655 999999999999  9999999  999 45 79999999999       


Q ss_pred             ------------HHhhcc---ccccccCeeeeCCceeEEecChhhHHHHHHhhccccCeEEeeeceeeccccCCCcceeE
Q 048420          109 ------------LIQKHD---APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCK  173 (386)
Q Consensus       109 ------------lIlKh~---a~~~~~~I~~~~dGlDFyf~~r~~A~k~v~fl~sv~P~~~k~S~qLis~D~~sn~~~yK  173 (386)
                                  .++|+.   ..++++++++.++||||||+|+++|+|+++||.+++|+++++|++|+|.|.++|+.+||
T Consensus       158 ~eee~~~~~ve~~v~k~~~~d~~~fIs~~~ek~eGiD~y~gs~~~arkva~~i~~~~~~~v~eS~~Lvg~d~~tgk~~yR  237 (355)
T COG1499         158 EEEEEAFLFVEEIVLKRKKRDRMAFISDTEEKKEGIDIYLGSRNAARKVARFILEKFGGEVKESEKLVGRDRFTGKRVYR  237 (355)
T ss_pred             chhHHHHHHHHHHHHhhhccccccchhhhcccccceEEEEeccchHHHHHHHHHHHcCcEEEecceeEEEecCCCceEEE
Confidence                        344554   45689999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeceeh---hccCCCCCeEEEEeeCCcEEEEcCCCCceeEeccccccccCCcccCCCCCceEEEEEeeeeccc-
Q 048420          174 YTCSVEISAISA---HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVAST-  249 (386)
Q Consensus       174 ~T~SVeI~pica---~~lG~i~~l~lc~kV~~~I~liDP~Tl~~~~l~~~~Ywr~pF~~l~~~~~LvefiVldie~~~~-  249 (386)
                      |||||+|||+|.   -++.+ +++++|.+.++.|.++|+.|++..+++.+.||+++|..+....+|++|+|++.++... 
T Consensus       238 ~t~Svrip~~~~gDiV~~~~-~~~~~v~~~~~~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vvs~~~~~~~  316 (355)
T COG1499         238 FTYSVRIPEFRPGDIVSVRG-RQLVLVRSIGKGIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAVVVSRDPSAIQ  316 (355)
T ss_pred             EEEEEECCCCCCCCEEEECC-CeEEEEEEecCceEEEecccCCccccChhhcccCcceeeeccccceEEEEEecCCCceE
Confidence            999999999992   22222 6999999999999999999999999999999999999999999999999999998753 


Q ss_pred             -cCCcEEEEEeecCCccCCCCeEeeecccccCCCchH
Q 048420          250 -ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE  285 (386)
Q Consensus       250 -~nd~~~~~rTHLG~iL~~GD~vlGYdl~~~n~n~~~  285 (386)
                       ...++|.++||+|..|++||+|++|.+++.||+.++
T Consensus       317 v~d~et~e~~~~~~~~~~~g~~v~v~~~~~~~~~~~~  353 (355)
T COG1499         317 VLDPETYEARTVKGPSLEEGDEVKVFKVRGRNYVVEE  353 (355)
T ss_pred             EEecceEEEEeccCCCCCCCCEEEEEEEeceEEeecc
Confidence             556889999999999999999999999999987654

>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay

Probab=100.00  E-value=3.4e-43  Score=333.23  Aligned_cols=159  Identities=31%  Similarity=0.518  Sum_probs=154.3

Q ss_pred             eecCCCCCCCCCcccchHhhhccccccccccceeEEeecCc---------------------------------------
Q 048420           16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK---------------------------------------   56 (386)
Q Consensus        16 Cc~CG~~i~pn~~nmC~~Cl~~~vdItegIpk~~~i~~Cr~---------------------------------------   56 (386)
                      ||.||++++|+++|||.+|++++++|++ ||+++++.+||.                                       
T Consensus         1 C~~CG~~~~~~~~~lC~~C~~~~~~i~e-i~~~i~v~~C~~Cg~~~~~~~W~~~~~~el~~~~lk~v~~~l~~~~~~~~d   79 (236)
T PF04981_consen    1 CPRCGREIEPLIDGLCPDCYLKRFDIIE-IPDRIEVTICPKCGRYRIGGRWVDPESRELEELCLKKVERGLKKNIKVHVD   79 (236)
T ss_pred             CCCCCCCCCCcccccChHHhcccCCeee-cCCccCceECCCCCCEECCCEeeecCcccHHHHHHHHHHHHHHHhhccccc
Confidence            9999999999999999999999999998 999999999999                                       


Q ss_pred             ------------eEEEEEEEEEeecCeeEEEEEEEEE--eeeccCCCCccccccCCCcchhhhhhH--------------
Q 048420           57 ------------IKLKLTVQKEVLEGVIVEQSDVVMS--RNITCVNLVPGFMQTGPDHWDAAVQLE--------------  108 (386)
Q Consensus        57 ------------ikVkltVqkEv~~g~ilqQ~~vVe~--~~~~C~~~~C~r~~a~~~~w~A~VQvR--------------  108 (386)
                                  ++++++||+++++|+.+||++.|+|  ++++||+  |+|.+  ++||+|+||||              
T Consensus        80 ~~~v~~e~~~~r~~v~v~v~~~v~~~~~~~~~~~v~~~v~~~~C~~--C~r~~--~~~~eaiVQvR~~~r~~~~~e~~~~  155 (236)
T PF04981_consen   80 AEFVWTEPHSKRIKVKVTVQGEVHGGTPVEQEYEVEVRVKRQQCPD--CSRIA--GGYYEAIVQVRQRGRKLTEEEKEVI  155 (236)
T ss_pred             ccEEEEEeeCCEEEEEEEEEEEEcccceEEEEEEEEEEEEcCCChh--HHhhh--CCCccEEEEEEecCCCCCHHHHHHH
Confidence                        6789999999999999999999999  9999999  99986  69999999999              


Q ss_pred             ----------HHhhccccccccCeeeeCCceeEEecChhhHHHHHHhhccccCeEEeeeceeeccccCCCcceeEEEEEE
Q 048420          109 ----------LIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV  178 (386)
Q Consensus       109 ----------lIlKh~a~~~~~~I~~~~dGlDFyf~~r~~A~k~v~fl~sv~P~~~k~S~qLis~D~~sn~~~yK~T~SV  178 (386)
                                +++|+++++++++|++.++||||||+++++|+||++||++.+|+++++|++|||+|.+ |+++|||||||
T Consensus       156 ~~~~~~~le~l~~k~~~~~~i~~i~e~keGlD~y~~s~~~Arki~~~i~~~~~~~v~eS~klvg~~~~-gk~~yr~T~sV  234 (236)
T PF04981_consen  156 HKIVFEILEQLILKGDRHAFISDIEEVKEGLDFYFGSKNAARKIVSFIHSKFGGRVKESYKLVGRDDS-GKDVYRYTISV  234 (236)
T ss_pred             HHHHHHHHHHHHhhccchhcccceEECCCCEEEEECCHHHHHHHHHHHHHhcCeEEEECceeeeEeCC-CCeEEEEEEEE
Confidence                      5678899999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             Ee
Q 048420          179 EI  180 (386)
Q Consensus       179 eI  180 (386)
                      +|
T Consensus       235 rl  236 (236)
T PF04981_consen  235 RL  236 (236)
T ss_pred             EC
Confidence            97

This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 53/429 (12%), Positives = 116/429 (27%), Gaps = 113/429 (26%)

Query: 6   GIFAVRKTVSCCKCGITMVSNASNMCVTC---LKSEVDITESLQKHAN-ITPCPKIKLKL 61
            IF +   +  C    T++     +         S  D + +++   + I    +  LK 
Sbjct: 183 KIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 62  TVQKEVLEGVI---VEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPAR 118
              +  L  ++   V+ +    + N++C  L+     T        V   L       A 
Sbjct: 241 KPYENCL--LVLLNVQNAKAWNAFNLSCKILL----TTR----FKQVTDFLS------AA 284

Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ--------LVSRGTKSRNC 170
            T    +DH           ++  ++++    P     E          +++   +    
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL-LLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 171 KCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYL-------DAD--- 220
                  V    ++             T + +S+ +L+P   R  +         A    
Sbjct: 343 TWDNWKHVNCDKLT-------------TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 221 ----QYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDL 276
                 W            +++  V+ V V      +++  +     + I    +I  +L
Sbjct: 390 ILLSLIW----------FDVIKSDVMVV-VNKLHKYSLVEKQPKESTISI---PSIYLEL 435

Query: 277 HEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG---SKCG 333
               +N+  L             I   Y            PP L       D    S  G
Sbjct: 436 KVKLENEYALHR----------SIVDHYNIPKTFDSDDLIPPYL-------DQYFYSHIG 478

Query: 334 -----ADREKVNNEYEE------FLRDLMASVTDKEDVPSVPLDYLLADLDS-----SDK 377
                 +  +    +        FL   +   +   +     L+  L  L        D 
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDN 537

Query: 378 EEGDDSMIE 386
           +   + ++ 
Sbjct: 538 DPKYERLVN 546

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00