| Protein ID Link to complete analysis report |
Lenth Link to complete analysis report |
Similarity with COG COG1191 |
All predicted COG clusters |
|---|---|---|---|
| 1g010521m | 508 | hhsearch probability: 91.35 Identity: 22% subject length: 247 Length of aligned reigon: 63 Coverage over query: 189-261 Coverage over subject: 85-149 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG3413, Predicted DNA binding protein [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] |
| 1g010527m | 508 | hhsearch probability: 91.35 Identity: 22% subject length: 247 Length of aligned reigon: 63 Coverage over query: 189-261 Coverage over subject: 85-149 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG3413, Predicted DNA binding protein [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] |
| 1g009567m | 532 | hhsearch probability: 91.46 Identity: 20% subject length: 247 Length of aligned reigon: 147 Coverage over query: 219-416 Coverage over subject: 88-234 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG3355, Predicted transcriptional regulator [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g008352m | 569 | hhsearch probability: 91.37 Identity: 18% subject length: 247 Length of aligned reigon: 147 Coverage over query: 256-453 Coverage over subject: 88-234 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g010092m | 518 | hhsearch probability: 92.06 Identity: 32% subject length: 247 Length of aligned reigon: 38 Coverage over query: 232-269 Coverage over subject: 110-147 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g008652m | 558 | hhsearch probability: 91.31 Identity: 18% subject length: 247 Length of aligned reigon: 147 Coverage over query: 245-442 Coverage over subject: 88-234 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g008556m | 561 | hhsearch probability: 92.04 Identity: 20% subject length: 247 Length of aligned reigon: 147 Coverage over query: 248-445 Coverage over subject: 88-234 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g038591m | 82 | hhsearch probability: 95.03 Identity: 15% subject length: 247 Length of aligned reigon: 33 Coverage over query: 23-55 Coverage over subject: 202-234 |
COG1476, Predicted transcriptional regulators [Transcription] COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription] COG2944, Predicted transcriptional regulator [Transcription] COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription] COG3093, VapI Plasmid maintenance system antidote protein [General function prediction only] COG3655, Predicted transcriptional regulator [Transcription] COG1709, Predicted transcriptional regulator [Transcription] COG1395, Predicted transcriptional regulator [Transcription] COG1396, HipB Predicted transcriptional regulators [Transcription] COG5499, Predicted transcription regulator containing HTH domain [Transcription] COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown] COG3636, Predicted transcriptional regulator [Transcription] COG4800, Predicted transcriptional regulator with an HTH domain [Transcription] COG2522, Predicted transcriptional regulator [General function prediction only] COG3423, Nlp Predicted transcriptional regulator [Transcription] COG1609, PurR Transcriptional regulators [Transcription] COG5606, Uncharacterized conserved small protein [Function unknown] COG4197, Uncharacterized protein conserved in bacteria, prophage-related [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1513, CynS Cyanate lyase [Inorganic ion transport and metabolism] COG1318, Predicted transcriptional regulators [Transcription] COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair] COG3311, AlpA Predicted transcriptional regulator [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1522, Lrp Transcriptional regulators [Transcription] COG0789, SoxR Predicted transcriptional regulators [Transcription] COG2512, Predicted membrane-associated trancriptional regulator [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG1974, LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms] COG2973, TrpR Trp operon repressor [Transcription] COG1309, AcrR Transcriptional regulator [Transcription] COG5484, Uncharacterized conserved protein [Function unknown] COG1508, RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4565, CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] COG3355, Predicted transcriptional regulator [Transcription] COG1654, BirA Biotin operon repressor [Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] |
| 1g013447m | 443 | hhsearch probability: 95.80 Identity: 24% subject length: 247 Length of aligned reigon: 63 Coverage over query: 189-261 Coverage over subject: 85-149 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] |
| 1g032366m | 142 | hhsearch probability: 92.62 Identity: 18% subject length: 247 Length of aligned reigon: 34 Coverage over query: 84-117 Coverage over subject: 201-234 |
COG1476, Predicted transcriptional regulators [Transcription] COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription] COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription] COG3093, VapI Plasmid maintenance system antidote protein [General function prediction only] COG1709, Predicted transcriptional regulator [Transcription] COG1396, HipB Predicted transcriptional regulators [Transcription] COG1395, Predicted transcriptional regulator [Transcription] COG3655, Predicted transcriptional regulator [Transcription] COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown] COG5499, Predicted transcription regulator containing HTH domain [Transcription] COG2522, Predicted transcriptional regulator [General function prediction only] COG4800, Predicted transcriptional regulator with an HTH domain [Transcription] COG3636, Predicted transcriptional regulator [Transcription] COG5606, Uncharacterized conserved small protein [Function unknown] COG3423, Nlp Predicted transcriptional regulator [Transcription] COG4197, Uncharacterized protein conserved in bacteria, prophage-related [Function unknown] COG1513, CynS Cyanate lyase [Inorganic ion transport and metabolism] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2944, Predicted transcriptional regulator [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair] |
| 1g014852m | 417 | hhsearch probability: 97.13 Identity: 19% subject length: 247 Length of aligned reigon: 153 Coverage over query: 190-393 Coverage over subject: 86-239 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g012567m | 460 | hhsearch probability: 94.96 Identity: 19% subject length: 247 Length of aligned reigon: 144 Coverage over query: 216-411 Coverage over subject: 92-235 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g012638m | 459 | hhsearch probability: 95.30 Identity: 14% subject length: 247 Length of aligned reigon: 126 Coverage over query: 254-422 Coverage over subject: 111-236 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g013472m | 442 | hhsearch probability: 95.35 Identity: 15% subject length: 247 Length of aligned reigon: 126 Coverage over query: 254-422 Coverage over subject: 111-236 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g014764m | 419 | hhsearch probability: 97.30 Identity: 19% subject length: 247 Length of aligned reigon: 152 Coverage over query: 191-392 Coverage over subject: 87-238 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] |
| 1g031871m | 151 | hhsearch probability: 91.51 Identity: 18% subject length: 247 Length of aligned reigon: 34 Coverage over query: 93-126 Coverage over subject: 201-234 |
COG1476, Predicted transcriptional regulators [Transcription] COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription] COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription] COG1709, Predicted transcriptional regulator [Transcription] COG3093, VapI Plasmid maintenance system antidote protein [General function prediction only] COG1396, HipB Predicted transcriptional regulators [Transcription] COG3655, Predicted transcriptional regulator [Transcription] COG1395, Predicted transcriptional regulator [Transcription] COG5499, Predicted transcription regulator containing HTH domain [Transcription] COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown] COG4800, Predicted transcriptional regulator with an HTH domain [Transcription] COG2522, Predicted transcriptional regulator [General function prediction only] COG5606, Uncharacterized conserved small protein [Function unknown] COG3636, Predicted transcriptional regulator [Transcription] COG3423, Nlp Predicted transcriptional regulator [Transcription] COG1513, CynS Cyanate lyase [Inorganic ion transport and metabolism] COG4197, Uncharacterized protein conserved in bacteria, prophage-related [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2944, Predicted transcriptional regulator [Transcription] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g011324m | 488 | hhsearch probability: 96.11 Identity: 19% subject length: 247 Length of aligned reigon: 149 Coverage over query: 256-455 Coverage over subject: 88-236 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g011577m | 482 | hhsearch probability: 96.03 Identity: 19% subject length: 247 Length of aligned reigon: 149 Coverage over query: 256-455 Coverage over subject: 88-236 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] |
| 1g011992m | 473 | hhsearch probability: 99.21 Identity: 25% subject length: 247 Length of aligned reigon: 129 Coverage over query: 319-452 Coverage over subject: 14-150 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g020126m | 330 | hhsearch probability: 92.19 Identity: 23% subject length: 247 Length of aligned reigon: 66 Coverage over query: 189-262 Coverage over subject: 85-150 |
COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g022167m | 301 | hhsearch probability: 92.03 Identity: 21% subject length: 247 Length of aligned reigon: 62 Coverage over query: 191-262 Coverage over subject: 87-150 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g023151m | 286 | hhsearch probability: 90.26 Identity: 14% subject length: 247 Length of aligned reigon: 151 Coverage over query: 17-181 Coverage over subject: 53-236 |
COG1405, SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] COG5333, CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g007404m | 605 | hhsearch probability: 100.00 Identity: 31% subject length: 247 Length of aligned reigon: 222 Coverage over query: 362-594 Coverage over subject: 21-245 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG3413, Predicted DNA binding protein [General function prediction only] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] |
| 1g010835m | 499 | hhsearch probability: 100.00 Identity: 34% subject length: 247 Length of aligned reigon: 240 Coverage over query: 203-489 Coverage over subject: 3-246 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g009803m | 525 | hhsearch probability: 100.00 Identity: 31% subject length: 247 Length of aligned reigon: 222 Coverage over query: 282-514 Coverage over subject: 21-245 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1342, Predicted DNA-binding proteins [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] |
| 1g010284m | 513 | hhsearch probability: 100.00 Identity: 32% subject length: 247 Length of aligned reigon: 225 Coverage over query: 267-503 Coverage over subject: 17-244 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g010338m | 513 | hhsearch probability: 100.00 Identity: 32% subject length: 247 Length of aligned reigon: 225 Coverage over query: 267-503 Coverage over subject: 17-244 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g010327m | 513 | hhsearch probability: 100.00 Identity: 32% subject length: 247 Length of aligned reigon: 225 Coverage over query: 267-503 Coverage over subject: 17-244 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g010308m | 513 | hhsearch probability: 100.00 Identity: 32% subject length: 247 Length of aligned reigon: 225 Coverage over query: 267-503 Coverage over subject: 17-244 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG1342, Predicted DNA-binding proteins [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g009449m | 534 | hhsearch probability: 100.00 Identity: 30% subject length: 247 Length of aligned reigon: 229 Coverage over query: 285-524 Coverage over subject: 13-245 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG3413, Predicted DNA binding protein [General function prediction only] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g020252m | 328 | hhsearch probability: 98.85 Identity: 22% subject length: 247 Length of aligned reigon: 45 Coverage over query: 283-328 Coverage over subject: 22-67 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g017761m | 366 | hhsearch probability: 99.63 Identity: 20% subject length: 247 Length of aligned reigon: 70 Coverage over query: 283-353 Coverage over subject: 22-97 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g012691m | 458 | hhsearch probability: 99.82 Identity: 31% subject length: 247 Length of aligned reigon: 91 Coverage over query: 363-455 Coverage over subject: 22-113 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g014193m | 429 | hhsearch probability: 99.85 Identity: 26% subject length: 247 Length of aligned reigon: 106 Coverage over query: 318-425 Coverage over subject: 13-120 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g014241m | 428 | hhsearch probability: 99.88 Identity: 27% subject length: 247 Length of aligned reigon: 97 Coverage over query: 326-424 Coverage over subject: 22-120 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g011454m | 485 | hhsearch probability: 100.00 Identity: 33% subject length: 247 Length of aligned reigon: 227 Coverage over query: 203-475 Coverage over subject: 3-246 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG3413, Predicted DNA binding protein [General function prediction only] COG1342, Predicted DNA-binding proteins [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] |
| 1g012710m | 458 | hhsearch probability: 99.82 Identity: 31% subject length: 247 Length of aligned reigon: 91 Coverage over query: 363-455 Coverage over subject: 22-113 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g017044m | 378 | hhsearch probability: 99.13 Identity: 27% subject length: 247 Length of aligned reigon: 52 Coverage over query: 326-378 Coverage over subject: 22-81 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g016880m | 381 | hhsearch probability: 99.82 Identity: 34% subject length: 247 Length of aligned reigon: 95 Coverage over query: 284-380 Coverage over subject: 12-108 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g019251m | 344 | hhsearch probability: 98.66 Identity: 32% subject length: 247 Length of aligned reigon: 50 Coverage over query: 286-336 Coverage over subject: 14-65 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g016759m | 383 | hhsearch probability: 99.82 Identity: 34% subject length: 247 Length of aligned reigon: 95 Coverage over query: 284-380 Coverage over subject: 12-108 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g016894m | 381 | hhsearch probability: 99.82 Identity: 34% subject length: 247 Length of aligned reigon: 95 Coverage over query: 284-380 Coverage over subject: 12-108 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g019233m | 344 | hhsearch probability: 98.66 Identity: 32% subject length: 247 Length of aligned reigon: 50 Coverage over query: 286-336 Coverage over subject: 14-65 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] |
| 1g017616m | 368 | hhsearch probability: 99.78 Identity: 35% subject length: 247 Length of aligned reigon: 83 Coverage over query: 284-367 Coverage over subject: 12-96 |
COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] |
| 1g046578m | 379 | hhsearch probability: 100.00 Identity: 30% subject length: 247 Length of aligned reigon: 234 Coverage over query: 127-371 Coverage over subject: 10-246 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] COG4566, TtrR Response regulator [Signal transduction mechanisms] COG2197, CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] COG2739, Uncharacterized protein conserved in bacteria [Function unknown] COG1342, Predicted DNA-binding proteins [General function prediction only] COG1356, tfx Transcriptional regulator [DNA replication, recombination and repair] COG3413, Predicted DNA binding protein [General function prediction only] COG2390, DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair] |
| 1g016321m | 391 | hhsearch probability: 99.87 Identity: 28% subject length: 247 Length of aligned reigon: 141 Coverage over query: 204-387 Coverage over subject: 4-152 |
COG1191, FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] COG1595, RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] COG0568, RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] |