Psyllid ID: psy10006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRRENPNRNRDLS
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEEEccccccccEEcccEEEEEEEEcccccccEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEcccccccccccccccEEEEEEEEcccccHHEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MCKAAKTTIVEVEELvnigdldpdsihvpgifVNRIVQCSNYDKRIERSVdgwcnrrenpnrnrdls
Flexible Loop (DISEMBL)
MCKAAKTTIVEVEElvnigdldpdsiHVPGIFVNrivqcsnydkriersvdgwcnrrenpnrnrdls
Low Complexity Region (SEG)
MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRRENPNRNRDLS
Disordered region (IsUnstruct)
******TTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWC*************
Disordered Region (DISOPRED)
**KAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRI*********************
Disordered Region (DISEMBL)
MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRRENPNRNRDLS
Disordered Region (DISPRO)
**KAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDG***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRRENPNRNRDLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q29551	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.716	0.092	0.604	3e-12
P55809	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.716	0.092	0.583	6e-12
B2GV06	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.716	0.092	0.583	7e-12
Q9D0K2	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.716	0.092	0.583	7e-12
Q54JD9	509	Probable succinyl-CoA:3-k	yes	N/A	0.716	0.094	0.562	1e-10
Q09450	521	Probable succinyl-CoA:3-k	yes	N/A	0.716	0.092	0.541	5e-09
Q9ZLE3	232	Succinyl-CoA:3-ketoacid c	yes	N/A	0.686	0.198	0.521	2e-08
P56006	232	Succinyl-CoA:3-ketoacid c	yes	N/A	0.671	0.193	0.533	2e-08
P42315	238	Probable succinyl-CoA:3-k	yes	N/A	0.671	0.189	0.533	6e-08
P63648	248	Probable succinyl-CoA:3-k	yes	N/A	0.671	0.181	0.511	8e-08

>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Sus scrofa GN=OXCT1 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 234 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 281

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
Sus scrofa (taxid: 9823)
EC: 2EC: .EC: 8EC: .EC: 3EC: .EC: 5

>sp|P55809|SCOT1_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct: 234 MCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIER 281

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|B2GV06|SCOT1_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Rattus norvegicus GN=Oxct1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 39/48 (81%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct: 234 MCKAAGTTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9D0K2|SCOT1_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Mus musculus GN=Oxct1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 39/48 (81%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct: 234 MCKAAGTTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q54JD9|SCOT_DICDI Probable succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial OS=Dictyostelium discoideum GN=oxct1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 38/48 (79%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           M  AAK TI EVEE+V+ G++ PD +HVPGI++ RIV+  +++KRIER
Sbjct: 223 MATAAKITIAEVEEIVDAGEIKPDEVHVPGIYIQRIVKGPSFEKRIER 270

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial OS=Caenorhabditis elegans GN=C05C10.3 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKA+K TIVEVEE+V  G + P+ +H+P I+ +R+V   NY K IER
Sbjct: 233 MCKASKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRLVLGKNYKKPIER 280

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9ZLE3|SCOA_HELPJ Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A OS=Helicobacter pylori (strain J99) GN=scoA PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERS 49
           AAK  + EVEE+V  G+LDPD IH+PGI+V  I +   ++KRIE++
Sbjct: 181 AAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKT 226

Helicobacter pylori (strain J99) (taxid: 85963)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|P56006|SCOA_HELPY Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=scoA PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           AAK  + EVEE+V  G+LDPD IH+PGI+V  I +   ++KRIE+
Sbjct: 181 AAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEK 225

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|P42315|SCOA_BACSU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A OS=Bacillus subtilis (strain 168) GN=scoA PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           A K TI E EE+V  G+LDPD IH PGI+V  +V  ++ +KRIE+
Sbjct: 181 AGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEK 225

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|P63648|SCOA_MYCTU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A OS=Mycobacterium tuberculosis GN=scoA PE=3 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           A + TI EVE LV  G++DP ++H PG+FV+R+V   N  K+IER
Sbjct: 199 AGRITIAEVEHLVEPGEIDPATVHTPGVFVHRVVHVPNPAKKIER 243

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
307186593	834	Succinyl-CoA:3-ketoacid-coenzyme A trans	0.716	0.057	0.708	9e-13
195439856	514	GK12531 [Drosophila willistoni] gi|19416	0.716	0.093	0.666	3e-12
198436711	505	PREDICTED: similar to Oxct1 protein [Cio	0.716	0.095	0.625	3e-12
442629628	450	CG1140, isoform C [Drosophila melanogast	0.716	0.106	0.645	3e-12
24655794	502	CG1140, isoform B [Drosophila melanogast	0.716	0.095	0.645	3e-12
21358325	516	CG1140, isoform A [Drosophila melanogast	0.716	0.093	0.645	3e-12
259013617	551	AT31327p [Drosophila melanogaster]	0.716	0.087	0.645	3e-12
195490646	516	GE21204 [Drosophila yakuba] gi|194179328	0.716	0.093	0.645	3e-12
340617796	232	3-oxoacid CoA-transferase subunit A [Zob	0.716	0.206	0.687	4e-12
194746974	516	GF24850 [Drosophila ananassae] gi|190623	0.716	0.093	0.687	4e-12

>gi|307186593|gb|EFN72110.1| Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial [Camponotus floridanus]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 42/48 (87%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAAK +IVEVEE+V IG LDPD IH+PGIFV+RIV+  +Y+KRIE+
Sbjct: 601 MCKAAKISIVEVEEIVGIGQLDPDQIHLPGIFVDRIVKGPSYEKRIEK 648

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439856|ref|XP_002067775.1| GK12531 [Drosophila willistoni] gi|194163860|gb|EDW78761.1| GK12531 [Drosophila willistoni]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEELV +G L PD IHVPGI+V RI + SNY+KR+ER
Sbjct: 226 MCRAAKITVAEVEELVPVGSLSPDEIHVPGIYVKRIFKGSNYNKRVER 273

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198436711|ref|XP_002131269.1| PREDICTED: similar to Oxct1 protein [Ciona intestinalis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 42/48 (87%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAAKTTIVEVEE+V  G++ PD +HVPG++V+R+++ + Y+KRIER
Sbjct: 224 MCKAAKTTIVEVEEIVETGEIPPDQVHVPGVYVHRVIKGNKYEKRIER 271

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|442629628|ref|NP_001261301.1| CG1140, isoform C [Drosophila melanogaster] gi|440215169|gb|AGB93996.1| CG1140, isoform C [Drosophila melanogaster]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEE+V IG L PD IHVPGI++NRI + +NY+KR+ER
Sbjct: 162 MCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVER 209

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24655794|ref|NP_728699.1| CG1140, isoform B [Drosophila melanogaster] gi|23092830|gb|AAN11508.1| CG1140, isoform B [Drosophila melanogaster]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEE+V IG L PD IHVPGI++NRI + +NY+KR+ER
Sbjct: 214 MCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVER 261

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358325|ref|NP_647683.1| CG1140, isoform A [Drosophila melanogaster] gi|7292189|gb|AAF47600.1| CG1140, isoform A [Drosophila melanogaster] gi|16197775|gb|AAL13483.1| GH01464p [Drosophila melanogaster] gi|220946592|gb|ACL85839.1| CG1140-PA [synthetic construct]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEE+V IG L PD IHVPGI++NRI + +NY+KR+ER
Sbjct: 228 MCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVER 275

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|259013617|gb|ACV88439.1| AT31327p [Drosophila melanogaster]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEE+V IG L PD IHVPGI++NRI + +NY+KR+ER
Sbjct: 263 MCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVER 310

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490646|ref|XP_002093227.1| GE21204 [Drosophila yakuba] gi|194179328|gb|EDW92939.1| GE21204 [Drosophila yakuba]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEE+V IG L PD IHVPGI++NRI + +NY+KR+ER
Sbjct: 228 MCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVER 275

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340617796|ref|YP_004736249.1| 3-oxoacid CoA-transferase subunit A [Zobellia galactanivorans] gi|339732593|emb|CAZ95861.1| 3-Oxoacid CoA-transferase subunit A [Zobellia galactanivorans]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC AAK T+ EVEELV  G+LDP+ IH+PGIFV RI Q SNY+KRIE+
Sbjct: 179 MCGAAKITVAEVEELVPAGELDPNQIHIPGIFVQRIFQGSNYEKRIEQ 226

Source: Zobellia galactanivorans

Species: Zobellia galactanivorans

Genus: Zobellia

Family: Flavobacteriaceae

Order: Flavobacteriales

Class: Flavobacteriia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|194746974|ref|XP_001955929.1| GF24850 [Drosophila ananassae] gi|190623211|gb|EDV38735.1| GF24850 [Drosophila ananassae]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MC+AAK T+ EVEELV IG L PD IHVPGI+V RI + +NY+KRIER
Sbjct: 228 MCRAAKITVAEVEELVPIGALSPDEIHVPGIYVKRIFKGTNYNKRIER 275

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
FB|FBgn0035298	516	CG1140 [Drosophila melanogaste	0.716	0.093	0.645	2.9e-12
ZFIN|ZDB-GENE-040723-3	525	oxct1a "3-oxoacid CoA transfer	0.955	0.121	0.523	1.3e-11
ZFIN|ZDB-GENE-060929-212	526	oxct1b "3-oxoacid CoA transfer	0.716	0.091	0.604	2.2e-11
UNIPROTKB|F1N9Z7	506	OXCT1 "Succinyl-CoA:3-ketoacid	0.716	0.094	0.625	2.6e-11
UNIPROTKB|F1NRM0	510	OXCT1 "Succinyl-CoA:3-ketoacid	0.716	0.094	0.625	2.7e-11
UNIPROTKB|E9PDW2	334	OXCT1 "Succinyl-CoA:3-ketoacid	0.716	0.143	0.583	3.7e-11
UNIPROTKB|Q29551	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.716	0.092	0.604	4.5e-11
UNIPROTKB|Q24JZ7	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.716	0.092	0.583	5.8e-11
UNIPROTKB|F1PJ13	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.716	0.092	0.583	5.8e-11
RGD|2323650	446	LOC100359544 "succinyl-CoA:3-k	0.716	0.107	0.583	9.2e-11

FB|FBgn0035298 CG1140 [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MC+AAK T+ EVEE+V IG L PD IHVPGI++NRI + +NY+KR+ER
Sbjct:   228 MCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVER 275

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=ISS

ZFIN|ZDB-GENE-040723-3 oxct1a "3-oxoacid CoA transferase 1a" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRRENP 60
             MCKAAKTTIVEVEE+V++G    + IH+P I+V+RIV   +Y+KRIER       + ENP
Sbjct:   241 MCKAAKTTIVEVEEIVDVGTFASEDIHIPSIYVHRIVNGDHYEKRIERRTVKKA-QAENP 299

Query:    61 NRNRD 65
                +D
Sbjct:   300 KPKKD 304

GO:0008152 "metabolic process" evidence=IEA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-060929-212 oxct1b "3-oxoacid CoA transferase 1b" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 29/48 (60%), Positives = 42/48 (87%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAAK TIVEVEE+V+IG  + + IH+PGI+V+R+V+ ++Y+KRIE+
Sbjct:   242 MCKAAKVTIVEVEEIVDIGSFNAEDIHIPGIYVDRVVKGASYEKRIEK 289

GO:0008152 "metabolic process" evidence=IEA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1N9Z7 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAAKTT+VEVEE+V+IG   P+ IHVP I+V+R++Q   ++KRIER
Sbjct:   234 MCKAAKTTVVEVEEIVDIGAFAPEDIHVPKIYVDRLIQGEKFEKRIER 281

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

UNIPROTKB|F1NRM0 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAAKTT+VEVEE+V+IG   P+ IHVP I+V+R++Q   ++KRIER
Sbjct:   234 MCKAAKTTVVEVEEIVDIGAFAPEDIHVPKIYVDRLIQGEKFEKRIER 281

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

UNIPROTKB|E9PDW2 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 28/48 (58%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct:    48 MCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIER 95

GO:0008410 "CoA-transferase activity" evidence=IEA

UNIPROTKB|Q29551 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 162 (62.1 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct:   234 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 281

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS;IDA

GO:0046950 "cellular ketone body metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

UNIPROTKB|Q24JZ7 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 28/48 (58%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct:   234 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281

GO:0046950 "cellular ketone body metabolic process" evidence=ISS

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

UNIPROTKB|F1PJ13 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Canis lupus familiaris (taxid:9615)]

 Score = 161 (61.7 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 28/48 (58%), Positives = 40/48 (83%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct:   234 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

RGD|2323650 LOC100359544 "succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial-like" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 28/48 (58%), Positives = 39/48 (81%)

Query:     1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
             MCKAA TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct:   234 MCKAAGTTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281

GO:0005739 "mitochondrion" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P63648	SCOA_MYCTU	2, ., 8, ., 3, ., 5	0.5111	0.6716	0.1814	yes	N/A
Q54JD9	SCOT_DICDI	2, ., 8, ., 3, ., 5	0.5625	0.7164	0.0943	yes	N/A
Q01103	PCAI_PSEPU	2, ., 8, ., 3, ., 6	0.5428	0.5223	0.1515	yes	N/A
Q9D0K2	SCOT1_MOUSE	2, ., 8, ., 3, ., 5	0.5833	0.7164	0.0923	yes	N/A
P55809	SCOT1_HUMAN	2, ., 8, ., 3, ., 5	0.5833	0.7164	0.0923	yes	N/A
P42315	SCOA_BACSU	2, ., 8, ., 3, ., 5	0.5333	0.6716	0.1890	yes	N/A
P56006	SCOA_HELPY	2, ., 8, ., 3, ., 5	0.5333	0.6716	0.1939	yes	N/A
Q9ZLE3	SCOA_HELPJ	2, ., 8, ., 3, ., 5	0.5217	0.6865	0.1982	yes	N/A
Q29551	SCOT1_PIG	2, ., 8, ., 3, ., 5	0.6041	0.7164	0.0923	yes	N/A
Q09450	SCOT_CAEEL	2, ., 8, ., 3, ., 5	0.5416	0.7164	0.0921	yes	N/A
P63649	SCOA_MYCBO	2, ., 8, ., 3, ., 5	0.5111	0.6716	0.1814	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
COG1788	220	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA tra	4e-16
TIGR02429	222	TIGR02429, pcaI_scoA_fam, 3-oxoacid CoA-transferas	1e-14
smart00882	212	smart00882, CoA_trans, Coenzyme A transferase	2e-10
pfam01144	216	pfam01144, CoA_trans, Coenzyme A transferase	4e-10
PRK09920	219	PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA tra	2e-07
COG4670	527	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA	0.002

>gnl|CDD|224702 COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]

 Score = 68.4 bits (168), Expect = 4e-16
 Identities = 22/37 (59%), Positives = 29/37 (78%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
           M  AAK TIVEVEE+V +G+LDP+ +  PGIFV+ +V
Sbjct: 178 MAMAAKRTIVEVEEIVPLGELDPEEVVTPGIFVDAVV 214

Length = 220

>gnl|CDD|131482 TIGR02429, pcaI_scoA_fam, 3-oxoacid CoA-transferase, A subunit

 Score = 64.4 bits (157), Expect = 1e-14
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN 41
           M  AAKTTI +V ++V +G+LDP+ +  PGIFV R+V+  +
Sbjct: 181 MAMAAKTTIAQVSQVVELGELDPEDVITPGIFVQRVVEVRD 221

Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion. Length = 222

>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIH--VPGIFVNRIV 37
              AAK  IV+VEE+V++G LDPD +   +PG+ V+ +V
Sbjct: 174 TAAAAKKVIVQVEEIVDLGVLDPDPVRLLIPGVLVDAVV 212

Coenzyme A (CoA) transferases belong to an evolutionary conserved family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits. Length = 212

>gnl|CDD|201623 pfam01144, CoA_trans, Coenzyme A transferase

 Score = 52.3 bits (126), Expect = 4e-10
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
           AAK TI+EVEE+V +G+L P ++H+PG+ V+ +V
Sbjct: 181 AAKVTILEVEEIVEVGELLPLTVHIPGVLVDAVV 214

Length = 216

>gnl|CDD|182146 PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
           AA  T+VE +ELV  G+L PD I  PG  ++ I+
Sbjct: 181 AADITLVEPDELVETGELQPDHIVTPGAVIDHII 214

Length = 219

>gnl|CDD|227016 COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 1   MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
           + +AAK      I +V+ +V  G L P  + VPGI V+ ++
Sbjct: 200 IAQAAKNNGGIVIAQVKRVVKKGTLKPKDVRVPGILVDYVI 240

Length = 527

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
COG1788	220	AtoD Acyl CoA:acetate/3-ketoacid CoA transferase,	99.55
PRK09920	219	acetyl-CoA:acetoacetyl-CoA transferase subunit alp	99.52
TIGR02429	222	pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit	99.5
KOG3822|consensus	516		99.41
COG4670	527	Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid	99.25
PF01144	217	CoA_trans: Coenzyme A transferase; InterPro: IPR00	98.37
TIGR01110	543	mdcA malonate decarboxylase, alpha subunit. This m	97.72
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	93.41
TIGR03458	485	YgfH_subfam succinate CoA transferases. A closely	90.69
PF04223	466	CitF: Citrate lyase, alpha subunit (CitF); InterPr	80.84

>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]

Probab=99.55  E-value=2.6e-15  Score=107.65  Aligned_cols=40  Identities=55%  Similarity=0.931  Sum_probs=39.0

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||||||+|||||||||+.|+|+|+++++||+|||+||+++
T Consensus       178 ~A~AAk~~IvevEeIV~~gel~P~~v~tPg~~Vd~vV~~~  217 (220)
T COG1788         178 MAMAAKRTIVEVEEIVPLGELDPEEVVTPGIFVDAVVEVP  217 (220)
T ss_pred             HHhhcCeEEEEEEeeeccCccCccceecchheeEEEEecC
Confidence            7999999999999999999999999999999999999976

>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional

Probab=99.52  E-value=9.9e-15  Score=103.37  Aligned_cols=40  Identities=40%  Similarity=0.698  Sum_probs=38.3

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||+||||||+||+.|+|+|++|++||+|||+||+.+
T Consensus       178 ~A~AA~~vIv~ve~iV~~g~l~P~~v~iPg~~VD~VV~~~  217 (219)
T PRK09920        178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQ  217 (219)
T ss_pred             HHhhCCeEEEEEEEEecCCCcCCceEEcCceeEEEEEecC
Confidence            7999999999999999999999999999999999999854

>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit

Probab=99.50  E-value=1.7e-14  Score=102.25  Aligned_cols=40  Identities=50%  Similarity=0.900  Sum_probs=38.5

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||.||||||+||+.|+|+|++|++||+|||+||++.
T Consensus       181 ~A~AAk~vIv~vE~IV~~g~l~P~~v~iPg~~VDaVv~~~  220 (222)
T TIGR02429       181 MAMAAKTTIAQVSQVVELGELDPEDVITPGIFVQRVVEVR  220 (222)
T ss_pred             HHhhcCcEEEEEEEEecCCCcCCceEEcCceEEEEEEeCC
Confidence            7999999999999999999999999999999999999864

Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.

>KOG3822|consensus

Probab=99.41  E-value=1.3e-13  Score=106.34  Aligned_cols=54  Identities=54%  Similarity=0.865  Sum_probs=51.5

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeeeeec
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWC   54 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~~~~   54 (67)
                      |++|||++++||||||+.|.+.|++||+|+|||++++.+.+++|+||+.+....
T Consensus       231 MCkAak~TvvEVEEIV~iGa~aP~diHvP~IYv~RlikG~~Y~KriERl~i~~e  284 (516)
T KOG3822|consen  231 MCKAAKVTVVEVEEIVEIGAFAPEDIHVPNIYVHRLIKGQKYEKRIERLTILKE  284 (516)
T ss_pred             cchhccceEEEEeeeeccCccChhhccccceeeeeeeccccccchhhhceeccc
Confidence            899999999999999999999999999999999999999999999999997653

>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]

Probab=99.25  E-value=1.6e-12  Score=101.97  Aligned_cols=51  Identities=27%  Similarity=0.529  Sum_probs=45.6

Q ss_pred             Cccccc----EeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeeeee
Q psy10006          1 MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGW   53 (67)
Q Consensus         1 mA~AAk----~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~~~   53 (67)
                      ||+|||    +|||||+++|+.|+|.|++|.+||++|||||+.+++++|  +||...
T Consensus       200 iAqAakn~gG~VIaQVkrvv~~gsl~pk~V~VPG~LVDyvvV~~~~~~h--~Qt~~~  254 (527)
T COG4670         200 IAQAAKNNGGIVIAQVKRVVKKGTLKPKDVRVPGILVDYVIVVEDPEDH--WQTGST  254 (527)
T ss_pred             HHHHHHhcCCeEEEEehhhhhccCCCcceeEcCcceeeEEEEecChhhh--hhhccc
Confidence            588998    999999999999999999999999999999988766788  777644

>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another

Probab=98.37  E-value=1.2e-07  Score=64.81  Aligned_cols=38  Identities=45%  Similarity=0.708  Sum_probs=35.3

Q ss_pred             cccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEec
Q psy10006          2 CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQC   39 (67)
Q Consensus         2 A~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~   39 (67)
                      |+|+++||++|+++|+.+.+.|..+.+||++||+||+.
T Consensus       180 a~a~~~tiv~ve~iv~~~~~~~~~~~iPg~~Vd~Vvea  217 (217)
T PF01144_consen  180 AMAAKITIVTVEEIVEEGRRDPLRVVIPGVLVDAVVEA  217 (217)
T ss_dssp             HHCEEEEEEEEEEEECTTTSEEEEEEBTGGGHSEEEET
T ss_pred             cccceEEEEEEEEEeccCCccceEEEeCCCchHHeEeC
Confidence            45799999999999999999999999999999999963

They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....

>TIGR01110 mdcA malonate decarboxylase, alpha subunit

Probab=97.72  E-value=2.1e-05  Score=62.76  Aligned_cols=37  Identities=22%  Similarity=0.491  Sum_probs=32.4

Q ss_pred             Cccccc----EeEEEeceEeeCCCCCCCceeCCceeeeEEEecCC
Q psy10006          1 MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN   41 (67)
Q Consensus         1 mA~AAk----~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~   41 (67)
                      +|+||+    +|||||++||+    .+..+.+|+.+||+||+++.
T Consensus       166 aaeAAk~~agiVIVEVNeIVd----~~PrV~IP~s~VD~VVEa~~  206 (543)
T TIGR01110       166 IVEATAFRDGIVIAQVNELVD----KLPRVDIPASWVDFVIESPK  206 (543)
T ss_pred             HHHhhhhcCCEEEEEECccCC----CCCcEEcChhheEEEEEcCC
Confidence            356777    99999999999    47888999999999999874

This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=93.41  E-value=0.064  Score=42.77  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             cccccEeEEEeceEeeCCCCCCC-ceeCCceeeeEEEecCC
Q psy10006          2 CKAAKTTIVEVEELVNIGDLDPD-SIHVPGIFVNRIVQCSN   41 (67)
Q Consensus         2 A~AAk~vIvqve~iV~~G~l~P~-~V~iPGi~VD~VV~~~~   41 (67)
                      |.+|++||++++++++.    |. ...+|.-.|||||++..
T Consensus       176 A~~A~kVIaevn~~vP~----p~g~~~Ih~s~VD~VVEvd~  212 (492)
T TIGR01584       176 AQYADKVVAITDSLVPY----PNTPASIKQTQVDYVVKVDA  212 (492)
T ss_pred             HHhCCEEEEEECCCCCC----CCCCCccChhheEEEEEeCC
Confidence            67799999999999987    22 47889999999999753

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

>TIGR03458 YgfH_subfam succinate CoA transferases

Probab=90.69  E-value=0.2  Score=39.50  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             CcccccEeEEEeceEeeCC----------CCCCCceeCCce----------------eeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIG----------DLDPDSIHVPGI----------------FVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G----------~l~P~~V~iPGi----------------~VD~VV~~~   40 (67)
                      ||+|||+||+||++.++.-          ..+|+...+|..                =||+||+..
T Consensus       145 aa~aAk~VIvEVN~~mP~~~~~~~~~~~~~~~p~~~~ip~~~~~~~~G~~~i~i~~s~vd~ive~~  210 (485)
T TIGR03458       145 FLELADKVIVEVNTWQPLELEGMHDIYEPGDPPHRRPIPITTPGDRIGTPYIQIDPDKIVAVVETN  210 (485)
T ss_pred             HHHhCCEEEEEECCCCChhhhccccccccCCCCcCccccccCccccCCCcceeCCHHHeEEEEEcC
Confidence            5789999999999999843          335555544433                378888764

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.

>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2

Probab=80.84  E-value=1.4  Score=35.27  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=24.8

Q ss_pred             cccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          2 CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         2 A~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      |+-|++||+=.+.+|+.-..+   +.+|..+|||||+..
T Consensus       153 A~yA~~VV~iTD~Lv~yP~~p---~sI~q~~VDyVV~Vd  188 (466)
T PF04223_consen  153 AQYADKVVAITDNLVPYPNTP---ASIPQTQVDYVVVVD  188 (466)
T ss_dssp             HHH-SEEEEEESSEE-SS-SS----SB-GGG-SEEEE-S
T ss_pred             HHhcCcEEEEecCCCCCCCCC---CCcccceeeEEEEec
Confidence            456889999999999987653   779999999999875

8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
1ooz_A	475	Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Tran		2e-13
1o9l_A	481	Succinate:coenzyme-A Transferase (Pig Heart) Length		2e-13
3oxo_A	488	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		2e-13
2nrc_A	481	C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		2e-13
2nrb_A	481	C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		2e-13
3dlx_A	489	Crystal Structure Of Human 3-Oxoacid Coa Transferas		5e-13
1m3e_A	481	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		1e-12
3rrl_A	235	Complex Structure Of 3-Oxoadipate Coa-Transferase S		2e-09
3cdk_A	241	Crystal Structure Of The Co-Expressed Succinyl-Coa		4e-09

>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase From Pig Heart Length = 475

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart) Length = 481

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Covalently Bound To Coa Length = 488

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1 Length = 489

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 40/48 (83%)
Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+++   Y+KRIER
Sbjct: 196 MCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIER 243

>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart (Selenomethionine) Length = 481

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)
Query: 2   CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           CKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 196 CKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>pdb|3RRL|A Chain A, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit A And B From Helicobacter Pylori 26695 Length = 235

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           AAK  + EVEE+V  G+LDPD IH+PGI+V  I +   ++KRIE+
Sbjct: 184 AAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEK 228

>pdb|3CDK|A Chain A, Crystal Structure Of The Co-Expressed Succinyl-Coa Transferase A And B Complex From Bacillus Subtilis Length = 241

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 4   AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           A K TI E EE+V  G+LDPD IH PGI+V  +V  ++ +KRIE+
Sbjct: 184 AGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEK 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
3rrl_A	235	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	3e-26
3cdk_A	241	Succinyl-COA:3-ketoacid-coenzyme A transferase sub	2e-25
1k6d_A	220	Acetate COA-transferase alpha subunit; structural	3e-21
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	3e-19
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	3e-16
1poi_A	317	Glutaconate coenzyme A-transferase; COA, glutamate	4e-15

>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Length = 235

 Score = 94.3 bits (235), Expect = 3e-26
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
              AAK  + EVEE+V  G+LDPD IH+PGI+V  I +   ++KRIE+
Sbjct: 181 CAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEK 228

>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Length = 241

 Score = 92.4 bits (230), Expect = 2e-25
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
              A K TI E EE+V  G+LDPD IH PGI+V  +V  ++ +KRIE+
Sbjct: 181 AAMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEK 228

>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Length = 220

 Score = 81.1 bits (201), Expect = 3e-21
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNY 42
           +  AA  T+VE +ELV  G+L PD I  PG  ++ I+     
Sbjct: 178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQES 219

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Length = 481

 Score = 78.3 bits (193), Expect = 3e-19
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Length = 531

 Score = 69.7 bits (171), Expect = 3e-16
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 1   MCKAA-----KTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERS 49
           +   A        +++V+++V    L P S+ +PG  V+ +V   +  +    +
Sbjct: 210 VIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGA 263

>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Length = 317

 Score = 66.3 bits (162), Expect = 4e-15
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 1   MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIVQC 39
           + +AAK TIV  EE+++  ++  DP    +PG+ V+ +V  
Sbjct: 200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLA 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
3rrl_A	235	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	99.59
3cdk_A	241	Succinyl-COA:3-ketoacid-coenzyme A transferase sub	99.57
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	99.35
1k6d_A	220	Acetate COA-transferase alpha subunit; structural	99.33
1poi_A	317	Glutaconate coenzyme A-transferase; COA, glutamate	99.15
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	98.89
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	97.9
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	97.84
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	97.73
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	97.72
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	97.57
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	97.22
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	97.18
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	96.97
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	93.94
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	85.13

>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}

Probab=99.59  E-value=3.6e-16  Score=110.02  Aligned_cols=53  Identities=45%  Similarity=0.758  Sum_probs=49.8

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeeeee
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGW   53 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~~~   53 (67)
                      ||+|||+||+||+++|+.|+++|+.|++||+||||||++++++|+||++|.+.
T Consensus       181 ~a~aA~~vIveve~iv~~g~l~p~~v~ipg~~VD~VV~~~~~~~~~~~~~~~~  233 (235)
T 3rrl_A          181 CAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKITTRS  233 (235)
T ss_dssp             HHHTEEEEEEEESEEECTTSSCTTTCSBCGGGCSEEEECSCCCCCCSBCCCCC
T ss_pred             HHHhcCEEEEEEeeccccCccCCceEEeChHHeEEEEECCCCccceEEEEeec
Confidence            68999999999999999999999999999999999999988899999998753

>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}

Probab=99.57  E-value=6.1e-16  Score=108.33  Aligned_cols=57  Identities=42%  Similarity=0.680  Sum_probs=50.0

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeeeeecccc
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRR   57 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~~~~~~~   57 (67)
                      ||+|||+||+||+++|+.|+++|+.|++||++||+||+++.++++||+.+.+....|
T Consensus       181 ~a~aAk~VIveVn~~vp~g~l~p~~v~ipg~~VD~VV~~~~~~~~~e~~~~~~~~~~  237 (241)
T 3cdk_A          181 AAMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEKRTVQQASGK  237 (241)
T ss_dssp             HHHHEEEEEEEEEEEECTTSSCTTTCSBCGGGCSEEEECCSSCCCCSBCCCBC----
T ss_pred             HHHhCCEEEEEEeCCCCccccCCceEEeChHHeEEEEEcCCcccceeeeEeecCCcC
Confidence            689999999999999999999999999999999999999877889999988765444

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=99.35  E-value=2.3e-13  Score=103.75  Aligned_cols=51  Identities=57%  Similarity=0.993  Sum_probs=45.4

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeee
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVD   51 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~   51 (67)
                      ||+|||+|||||+++|+.|+++|+.|++||+||||||+++.+++.++..++
T Consensus       195 ~a~AA~~vIveVe~ivp~g~~~p~~v~ipgi~VD~VV~~~~~~~~i~~~~~  245 (481)
T 3k6m_A          195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSV  245 (481)
T ss_dssp             HTTSEEEEEEEEEEEECTTSSCGGGCSBCGGGCCEEEECSCCCCCCSBCCC
T ss_pred             HHHhCCeEEEEEeecccccccCCCeEEecchheEEEEECCCcCCcceeEee
Confidence            689999999999999999999999999999999999998755566666544

>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2

Probab=99.33  E-value=2.7e-13  Score=93.36  Aligned_cols=40  Identities=40%  Similarity=0.698  Sum_probs=38.3

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||+||+||+++|+.|+|+|+.|++||++||+||+++
T Consensus       178 ~a~aA~~VIveVn~~vp~~~l~p~~v~ipg~~VD~VV~~~  217 (220)
T 1k6d_A          178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQ  217 (220)
T ss_dssp             HHHHEEEEEEEEEEEECTTCSCGGGCCBCGGGCCEEECCC
T ss_pred             HHHhcCEEEEEEccccCccccCCceEEeChHHeEEEEecC
Confidence            5899999999999999999999999999999999999875

>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2

Probab=99.15  E-value=3e-12  Score=92.54  Aligned_cols=40  Identities=35%  Similarity=0.624  Sum_probs=38.5

Q ss_pred             CcccccEeEEEeceEeeCCCC--CCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l--~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||+|||||+++|+.|+|  +|+.|++||++||+||+++
T Consensus       200 ~a~aAk~VIveVe~ivp~g~l~~~p~~v~ipg~~VD~VV~~~  241 (317)
T 1poi_A          200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLAP  241 (317)
T ss_dssp             HHHHSSEEEEEEEEECCHHHHHSSGGGCCBCGGGCCEEEECT
T ss_pred             HHhhCCEEEEEEcCCCCchhhcCCCceEEeChHHEEEEEEeC
Confidence            689999999999999999999  9999999999999999986

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=98.89  E-value=3.6e-10  Score=86.50  Aligned_cols=40  Identities=25%  Similarity=0.558  Sum_probs=38.2

Q ss_pred             Cccccc----EeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk----~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||    +|||||+++|+.|+++|+.|++||++||+||+.+
T Consensus       211 ~a~aAk~~gg~VIveVn~ivp~~~l~p~~v~Ipg~~VD~vV~~~  254 (531)
T 2ahu_A          211 IAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDP  254 (531)
T ss_dssp             HHHHHHTTTCEEEEEESEEECTTCSCGGGEEECGGGCSEEEECT
T ss_pred             HHHhHhhcCCEEEEEEcCCCCccccCCCceecchhhCeEEEecC
Confidence            589999    9999999999999999999999999999999965

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=97.90  E-value=3.2e-06  Score=64.79  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=32.4

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||++|++||+||+++++.+ ++|  ..+|+++||+||+++
T Consensus       196 ~a~~A~~VIaEVn~~vP~~-~~p--~~I~~~~VD~IVe~d  232 (519)
T 2hj0_A          196 DAKYADQVVIVTDTLVPYP-NTP--ISIPQTDVDYIVVVD  232 (519)
T ss_dssp             HHHHCSEEEEEESSBCCSS-CSS--CSBCGGGCSEEEECS
T ss_pred             HHhhCCEEEEEeCCCCCCC-CCC--ceeCeEeeEEEEECC
Confidence            4789999999999999998 466  557899999999875

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=97.84  E-value=7.1e-06  Score=62.70  Aligned_cols=37  Identities=27%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||++|++||+||+++++.+ ++|  ..+|+++||+||+++
T Consensus       193 ~a~~A~~VIaEVn~~vP~~-~~~--~~Ip~~~VD~IVe~d  229 (509)
T 1xr4_A          193 DAQYAKCVVLLTEEWVEFP-NYP--ASIAQDQVDLIVQVD  229 (509)
T ss_dssp             HHHHCSEEEEEESCEECSS-CSS--CSBCGGGCSEEEECS
T ss_pred             HHhhCCEEEEEeCCCCCCC-CCC--cccCcEeeEEEEeCC
Confidence            4789999999999999997 454  457999999999875

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=97.73  E-value=7.3e-06  Score=62.61  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             CcccccEeEEEeceEeeCC----------CCCCCceeCCc----------------eeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIG----------DLDPDSIHVPG----------------IFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G----------~l~P~~V~iPG----------------i~VD~VV~~~   40 (67)
                      ||+||++||+||+++|+.+          .++|+++.+|+                .+||+||+++
T Consensus       148 ~a~aA~~VIveVn~~vP~~~~g~~d~~~~~~~P~~~~Ip~~~~~~r~G~~~i~i~~~~Vd~VVe~~  213 (506)
T 2nvv_A          148 ICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTS  213 (506)
T ss_dssp             HHHHCSEEEEEEETTSCGGGTTSBCBCCCCCTTSCCCCCCSSTTCCCSBSSEECCGGGEEEEEEEC
T ss_pred             HHHhCCcEEEEECCCCCcccccccccccccCCcccccccccccccccCCccccCChHHEEEEEEcC
Confidence            5789999999999999976          57999988886                7999999875

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=97.72  E-value=6.6e-06  Score=62.72  Aligned_cols=40  Identities=23%  Similarity=0.162  Sum_probs=35.1

Q ss_pred             CcccccEeEEEeceEeeCCC----------CCCCceeCCc----------------eeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGD----------LDPDSIHVPG----------------IFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~----------l~P~~V~iPG----------------i~VD~VV~~~   40 (67)
                      ||+||++||+||+++|+.+.          ++|++..+|+                .+||+||++.
T Consensus       153 ~a~aA~~VIvEVn~~vP~~~~g~hd~~~~~~~P~~~~ip~~~~~~r~G~~~i~i~~~~Vd~IVe~~  218 (497)
T 2g39_A          153 FAIFAKQVIVEINLAHSTNLEGLHDIYIPTYRPTRTPIPLTRVDDRIGSTAIPIPPEKIVAIVIND  218 (497)
T ss_dssp             HHHHSSEEEEEEETTSCGGGTTSBCBCCCCCTTSCCCCCCCSTTCCCSBSSBCCCGGGEEEEEEEC
T ss_pred             HHHhCCeEEEEEcCCCCcccccccccccccCCcccccccccccccccCCccccCChhHEEEEEEcC
Confidence            57899999999999999775          6899988886                7999999865

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=97.57  E-value=1.4e-05  Score=59.34  Aligned_cols=37  Identities=16%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+||++||+||+++++.+ +.|..|++++  ||+||+++
T Consensus       145 ~~~aA~~VIveVn~~vp~~-~g~~~I~~~~--VD~VVe~d  181 (439)
T 3d3u_A          145 AAECAPVVVAEVNKQMPFI-GGENLIHISK--LTHIIEVD  181 (439)
T ss_dssp             HHHHCSEEEEEEESSSCCC-EESCEEEGGG--CSEEEEEC
T ss_pred             HHhhCCeEEEEECCCCCCC-CCCCcCChhh--cEEEEECC
Confidence            5789999999999999988 7787766655  99999865

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=97.22  E-value=3.9e-05  Score=57.32  Aligned_cols=37  Identities=14%  Similarity=0.044  Sum_probs=31.1

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+||++||+||+++++.+..++.   +|+..||+||++.
T Consensus       139 ~a~aA~~VIveVn~~vP~~~g~~~---I~~~~VD~VVe~d  175 (436)
T 2oas_A          139 ACQVAGKIIAHINPQMPRTHGDGF---IHIDRFAAVYEQS  175 (436)
T ss_dssp             HHHHCSEEEEEECTTSCCCEESCE---EEGGGCSEEEECC
T ss_pred             HHHhcCeEEEEEcCCCCCCCCCCc---CChHHeEEEEECC
Confidence            578999999999999998665433   7888899999875

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=97.18  E-value=7.8e-05  Score=56.46  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||+||+||+++++.+ +.|..|++|  .||+||++.
T Consensus       144 ~a~~A~~VI~eVn~~vP~~-~g~~~I~~~--~VD~IVe~d  180 (448)
T 3gk7_A          144 AIKSAKIVLAEVNDQVPVV-YGDTFVHVS--EIDKFVETS  180 (448)
T ss_dssp             HHHHCSEEEEEEETTSCCC-SBSCEEEGG--GCSEEEEEC
T ss_pred             HHHhCCeEEEEeeccCCCC-CCCCccccc--CeEEEEECC
Confidence            5789999999999999987 789999987  799999875

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=96.97  E-value=0.00014  Score=54.65  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=32.2

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      +|++|++||+||+++++. .+.|..|++  .+||+||++.
T Consensus       148 ~~~~A~~VI~eVn~~vP~-~~g~~~I~~--~~VD~IVe~~  184 (434)
T 3eh7_A          148 AAESAHLVIGEINRQMPY-VHGDNLIHI--SKLDYIVMAD  184 (434)
T ss_dssp             HHHHCSEEEEEEETTSCC-CEESCEEEG--GGCSEEEEEC
T ss_pred             HHHhCCeEEEEecCCCCC-CCCCCeeee--EeeEEEEECC
Confidence            467899999999999999 888877654  9999999875

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=93.94  E-value=0.019  Score=43.65  Aligned_cols=39  Identities=26%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN   41 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~   41 (67)
                      ||++||+||+||++.++...-++..|+  --.||+||++..
T Consensus       169 ~a~~Ak~VI~EVN~~vP~~~g~r~~I~--~~~Vd~iVe~~~  207 (455)
T 3qli_A          169 IARSARRFIVEVNRYMPRVQGEAAAIH--ISEVDAIVENHV  207 (455)
T ss_dssp             HHHHSSEEEEEECTTSCCCCBTTCEEE--GGGCSEEEECCC
T ss_pred             HHhhcCEEEEEecCCCCCCCCCCCcCC--hHHcEEEEECCC
Confidence            478899999999999997433324554  478999999753

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=85.13  E-value=0.2  Score=37.90  Aligned_cols=39  Identities=26%  Similarity=0.141  Sum_probs=24.2

Q ss_pred             cccccEeEEEeceEeeCCCC------------CCCceeCCceeeeEEEecC
Q psy10006          2 CKAAKTTIVEVEELVNIGDL------------DPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         2 A~AAk~vIvqve~iV~~G~l------------~P~~V~iPGi~VD~VV~~~   40 (67)
                      +.+|++||+|+.+.+.....            .|....+|.+.||+++..+
T Consensus       158 ~~~A~~VIvevn~~~~~~~~g~~~i~~~~~~~ip~~~v~piv~vd~~ig~~  208 (514)
T 4eu9_A          158 LNLAEKVIIEVNEWQNPMLEGIHDIWDGNVSGVPTRDIVPIVRADQRVGGP  208 (514)
T ss_dssp             HHHCSEEEEEEETTSCGGGTTSEEBCCSCSSSSSSCCCCCCCSTTCCCSBS
T ss_pred             HHhCCeEEEEEecCcCceeccccccccCCCCCCCCcccccEEECCccccCC
Confidence            56799999999886554322            2444455566666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1ooya2	242	c.124.1.2 (A:1-242) Succinate:CoA transferase, N-t	3e-22
d1k6da_	219	c.124.1.2 (A:) Acetate:CoA transferase alpha {Esch	1e-14
d2ahua2	273	c.124.1.2 (A:4-276) Putative enzyme YdiF N-termina	1e-12
d1poia_	317	c.124.1.2 (A:) Glutaconate:CoA transferase alpha {	3e-11
d2g39a1	221	c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)	5e-05

>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Succinate:CoA transferase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 83.5 bits (206), Expect = 3e-22
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242

>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Length = 219

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetate:CoA transferase alpha
species: Escherichia coli [TaxId: 562]

 Score = 62.9 bits (152), Expect = 1e-14
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQC 39
           +  AA  T+VE +ELV  G+L PD I  PG  ++ I+  
Sbjct: 178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVS 216

>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Length = 273

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative enzyme YdiF N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (139), Expect = 1e-12
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN 41
           +       +++V+++V    L P S+ +PG  V+ +V   +
Sbjct: 212 VHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPD 252

>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Length = 317

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Glutaconate:CoA transferase alpha
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 54.2 bits (130), Expect = 3e-11
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 1   MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIVQCSN 41
           + +AAK TIV  EE+++  ++  DP    +PG+ V+ +V    
Sbjct: 200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLAPY 242

>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.8 bits (85), Expect = 5e-05
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
               AK  IVE+    +        I++P     R  
Sbjct: 151 FAIFAKQVIVEINLAHSTNLEGLHDIYIPTYRPTRTP 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1ooya2	242	Succinate:CoA transferase, N-terminal domain {Pig	99.64
d1k6da_	219	Acetate:CoA transferase alpha {Escherichia coli [T	99.44
d2ahua2	273	Putative enzyme YdiF N-terminal domain {Escherichi	99.27
d1poia_	317	Glutaconate:CoA transferase alpha {Acidaminococcus	99.2
d2g39a1	221	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	96.01

>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Succinate:CoA transferase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=2.6e-17  Score=114.46  Aligned_cols=48  Identities=60%  Similarity=1.097  Sum_probs=45.7

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceee
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER   48 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~   48 (67)
                      ||+|||.||||||+||+.|+|+|++|++||+|||+||++++++|+||+
T Consensus       195 ~a~Aa~~VIvqve~IV~~g~l~P~~v~IPg~~VD~VV~~p~~~~~~e~  242 (242)
T d1ooya2         195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER  242 (242)
T ss_dssp             HTTSEEEEEEEEEEEECTTSSCGGGCSBCGGGCCEEEECSCCCCCCCC
T ss_pred             HHHhCCcEEEEEEEEecCCCcCcceEEcCcceEEEEEECCCcccccCC
Confidence            699999999999999999999999999999999999999988888875

>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetate:CoA transferase alpha
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1e-14  Score=97.82  Aligned_cols=40  Identities=40%  Similarity=0.698  Sum_probs=38.4

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||+||+|||+||+.|+|+|++|++||+|||+||+++
T Consensus       178 ~a~Aa~~VIv~ve~iv~~~~l~p~~v~IPg~~VD~VV~~~  217 (219)
T d1k6da_         178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQ  217 (219)
T ss_dssp             HHHHEEEEEEEEEEEECTTCSCGGGCCBCGGGCCEEECCC
T ss_pred             HHHhCCCEEEEEeEEEcCCCcCcceEEcCccceEEEEECC
Confidence            5889999999999999999999999999999999999986

>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative enzyme YdiF N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=5.3e-13  Score=93.86  Aligned_cols=36  Identities=25%  Similarity=0.560  Sum_probs=34.5

Q ss_pred             cEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCC
Q psy10006          6 KTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN   41 (67)
Q Consensus         6 k~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~   41 (67)
                      ++||||||+||+.|+|+|++|++||+|||+||++|+
T Consensus       217 ~~vIv~vE~IV~~~~l~P~~v~iPg~~VD~VV~~P~  252 (273)
T d2ahua2         217 GIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPD  252 (273)
T ss_dssp             CEEEEEESEEECTTCSCGGGEEECGGGCSEEEECTT
T ss_pred             CEEEEEEEEEecCCCcCcceeEcCcceEEEEEECCC
Confidence            689999999999999999999999999999999873

>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Glutaconate:CoA transferase alpha
species: Acidaminococcus fermentans [TaxId: 905]

Probab=99.20  E-value=5.7e-13  Score=95.18  Aligned_cols=40  Identities=35%  Similarity=0.624  Sum_probs=38.7

Q ss_pred             CcccccEeEEEeceEeeCCCC--CCCceeCCceeeeEEEecC
Q psy10006          1 MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIVQCS   40 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l--~P~~V~iPGi~VD~VV~~~   40 (67)
                      ||+|||.||||||+||+.|+|  +|+.+++||+|||+||++|
T Consensus       200 ~A~Aa~~vIV~vE~IV~~~~l~~~P~~v~iPg~~VDaVV~aP  241 (317)
T d1poia_         200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLAP  241 (317)
T ss_dssp             HHHHSSEEEEEEEEECCHHHHHSSGGGCCBCGGGCCEEEECT
T ss_pred             HHhcCCceEEEEEEEEecCccCCCCCeEEechhheEEEEecC
Confidence            689999999999999999999  9999999999999999987

>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.01  E-value=0.00031  Score=46.52  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=33.4

Q ss_pred             CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEE
Q psy10006          1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV   37 (67)
Q Consensus         1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV   37 (67)
                      ++++||+||+||.+.++.+...+.+|++||+.+++..
T Consensus       151 ~~~~A~~VIvEVN~~~P~~~~g~hdi~~~~~~~~r~~  187 (221)
T d2g39a1         151 FAIFAKQVIVEINLAHSTNLEGLHDIYIPTYRPTRTP  187 (221)
T ss_dssp             HHHHSSEEEEEEETTSCGGGTTSBCBCCCCCTTSCCC
T ss_pred             HHHhCCEEEEEECCCCCcccCCccceeccCCCCCCee
Confidence            3678999999999999999999999999999998764