Psyllid ID: psy10021

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKKPKKSSSSSKHHHHATSKKNASVTHATPSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPGSASRARVTP
cEEEEccccEEEEEEEccHHHHHHHHHHHHHHccHHHHcccEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHccHHHHHcccccHHHHHcHHHHHHHHHccccccccccEEEEccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHccccccccccccc
cEEEEEccHHEEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEEEcccccccHHHHHHHccccEEEEEcccccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccEccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHcccHcHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHEEcccHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHccHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEEEEEccHHccccccccccHHHHHHHHHHHHHHEccc
mlvlfetpagYAFFKLLDEKKLQEADNlyesfqtpqgankVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADtkraaypslgttvllypyswsgsssnaaakhFHNSFvinikkpkkssssskhhhhatskknasvthatpsvetghtkplrakRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLigqsstknKGKMARMLAAKAALATRVdalgedssielgtdhRAKLEIKLRLLEEgnlrrlsgTTKAKAKLEKYHGKRLEKKKFktefdaaeetpatpdtsssgkkkkknknldtsivkaepedepaaadvSLSKKkkkkktqdeeepveeggeeeEVSKKKKKkkkkdvedetdplnhvglahslsryklkfspdkvDTMIVQAVSLLDDLDKELNNYMMRCRewygwhfpelgkivtdNVAFVKTIKTIGLAHSLsryklkfspdkvDTMIVQAVSLLDDLDKELNNYMMRCRewygwhfpelgkivtdnlkrndnstrdktsasdlseilpEDVEEKVKEAAEISmgteisdddIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLnlakhpastVQILGAEKALFRSLLNlakhpastVQILGAEKALFRALKtkrdtpkygliyhsqligqsstknkgkmgsygwqpgsasrarvtp
mlvlfetpagYAFFKLLDEKKLQEADNLYesfqtpqgankVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLlvadtkraaypsLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKKPKKSSSSSKHHHhatskknasvthatpsvetghtkplrakrkhqlklkrfkqtlcrrdFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALgedssielgtdhrakLEIKlrlleegnlrrlsgttkakaklekyhgkrlekkkfktefdaaeetpatpdtsssgkkkkknknldtsivkaepedepaaadvslskkkkkkktqdeeepveeggeeeevskkkkkkkkkdvedetdplnhvglahslsryKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTiglahslsryKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVtdnlkrndnstrdktsasdlseilpedvEEKVKEAAEISmgteisdddieNILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTkrdtpkygliyhsqligqsstknkgkmgsygwqpgsasrarvtp
MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDttealaattaaVEGklckklkkvlkslvssdvQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIkkpkkssssskhhhhatskknasVTHATPSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGkmarmlaakaalatrVDALGEDSSIELGTDHRAKLEIKlrlleegnlrrlSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGkkkkknknLDTSIVKaepedepaaadVSLSkkkkkkkTQdeeepveeggeeeevskkkkkkkkkdvedeTDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDveekvkeaaeISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPGSASRARVTP
**VLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINI**********************************************LKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQ************LAAKAALATRVDAL************RAKLEIKLRLL******************************************************************************************************************************VGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTD*******************************************DDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLI****************************
MLVLFETPAGYAFFKLLDEKKLQEADN**E*FQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINI***********************VTHATPSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQS**KNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRL********************************************************************EPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVG*******************MIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS***********KVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKV***A******EISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKA********RDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPGSASRARVTP
MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKK*******************************************QLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQS***********LAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEF*************************DTSIVKAE****************************************************TDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRN************LSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQS*************************
MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNA****FHNSFVINIKK**********************************KPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLS*********************************************KKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPGSASRARVTP
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MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKKPKKSSSSSKHHHHATSKKNASVTHATPSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPGSASRARVTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query716 2.2.26 [Sep-21-2011]
Q9Y2X3 529 Nucleolar protein 58 OS=H yes N/A 0.301 0.408 0.655 3e-90
Q4R779 530 Nucleolar protein 58 OS=M N/A N/A 0.301 0.407 0.655 4e-90
Q6DFW4 536 Nucleolar protein 58 OS=M yes N/A 0.301 0.402 0.655 3e-89
Q9QZ86 534 Nucleolar protein 58 OS=R yes N/A 0.301 0.404 0.651 7e-89
Q4PBF2 582 Nucleolar protein 58 OS=U N/A N/A 0.301 0.371 0.639 2e-87
Q9P7S7 508 Nucleolar protein 58 OS=S yes N/A 0.303 0.427 0.620 3e-86
Q59S06 515 Nucleolar protein 58 OS=C N/A N/A 0.303 0.421 0.595 3e-82
A6RMY5 568 Nucleolar protein 58 OS=B N/A N/A 0.301 0.380 0.610 3e-82
Q12499 511 Nucleolar protein 58 OS=S yes N/A 0.326 0.457 0.566 4e-82
A6ZPE5 511 Nucleolar protein 58 OS=S N/A N/A 0.326 0.457 0.566 4e-82
>sp|Q9Y2X3|NOP58_HUMAN Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1 Back     alignment and function desciption
 Score =  333 bits (854), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 160/244 (65%), Positives = 192/244 (78%), Gaps = 28/244 (11%)

Query: 460 TIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIV 519
            +GLAHSLSRY+LKFS DKVDTMIVQA+SLLDDLDKELNNY+MRCREWYGWHFPELGKI+
Sbjct: 139 CLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKII 198

Query: 520 TDNLKR----NDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLC 575
           +DNL           R   +++ LSE+LPE+VE +VK AAEISMGTE+S++DI NIL LC
Sbjct: 199 SDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLC 258

Query: 576 DQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQI 635
            QV+EIS YR QLY+YL++RMMA+APN+T+++GELVGARL+A AGSLLNLAKH ASTVQI
Sbjct: 259 TQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQI 318

Query: 636 LGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKN 695
           LGAEK                        ALFRALK++RDTPKYGLIYH+ L+GQ+S K+
Sbjct: 319 LGAEK------------------------ALFRALKSRRDTPKYGLIYHASLVGQTSPKH 354

Query: 696 KGKM 699
           KGK+
Sbjct: 355 KGKI 358
Required for 60S ribosomal subunit biogenesis.
Homo sapiens (taxid: 9606)
>sp|Q4R779|NOP58_MACFA Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1 Back     alignment and function description
>sp|Q6DFW4|NOP58_MOUSE Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZ86|NOP58_RAT Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58 PE=1 SV=1 Back     alignment and function description
>sp|Q4PBF2|NOP58_USTMA Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7S7|NOP58_SCHPO Nucleolar protein 58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop58 PE=1 SV=1 Back     alignment and function description
>sp|Q59S06|NOP58_CANAL Nucleolar protein 58 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|A6RMY5|NOP58_BOTFB Nucleolar protein 58 OS=Botryotinia fuckeliana (strain B05.10) GN=nop58 PE=3 SV=1 Back     alignment and function description
>sp|Q12499|NOP58_YEAST Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP58 PE=1 SV=1 Back     alignment and function description
>sp|A6ZPE5|NOP58_YEAS7 Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
91078900556 PREDICTED: similar to nop5 CG10206-PA [T 0.335 0.431 0.678 1e-100
328788216 819 PREDICTED: nucleolar protein 58-like [Ap 0.305 0.267 0.728 2e-99
380025750805 PREDICTED: nucleolar protein 58-like [Ap 0.305 0.272 0.724 5e-99
383852932589 PREDICTED: nucleolar protein 58-like [Me 0.305 0.371 0.720 8e-99
350417654588 PREDICTED: nucleolar protein 58-like [Bo 0.305 0.372 0.716 1e-97
321474032515 hypothetical protein DAPPUDRAFT_300779 [ 0.300 0.417 0.711 9e-96
224055403527 PREDICTED: nucleolar protein 58 [Taeniop 0.300 0.407 0.695 1e-95
50750286527 PREDICTED: nucleolar protein 58 [Gallus 0.300 0.407 0.695 3e-95
45361443533 NOP58 ribonucleoprotein [Xenopus (Silura 0.301 0.405 0.700 7e-95
77748280526 LOC398558 protein, partial [Xenopus laev 0.301 0.410 0.700 8e-95
>gi|91078900|ref|XP_973420.1| PREDICTED: similar to nop5 CG10206-PA [Tribolium castaneum] gi|270003699|gb|EFA00147.1| hypothetical protein TcasGA2_TC002968 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/274 (67%), Positives = 212/274 (77%), Gaps = 34/274 (12%)

Query: 430 MMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSL 489
           +MRC         +L  ++T       T   +GLAHSLSRYKLKFSPDK+DTMIVQAVSL
Sbjct: 116 LMRCIR------SQLDSLITGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAVSL 169

Query: 490 LDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDN----STRDKTSASDLSEILPE 545
           LDDLDKELNNY+MRCREWYGWHFPELGKI+TDN+          TRD T++SDLS+ILPE
Sbjct: 170 LDDLDKELNNYIMRCREWYGWHFPELGKIITDNVAFVKTVKIIGTRDNTASSDLSDILPE 229

Query: 546 DVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTI 605
           ++EEKVKEAAEISMGTEISDDDI NI  LCDQV+EIS+YR QLYDYLK+RMMA+APNLT 
Sbjct: 230 EIEEKVKEAAEISMGTEISDDDILNIQNLCDQVVEISNYRTQLYDYLKARMMAMAPNLTT 289

Query: 606 LMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKA 665
           L+G+LVGARL++ AGSL+NLAKHPASTVQILGAEK                        A
Sbjct: 290 LVGDLVGARLISHAGSLINLAKHPASTVQILGAEK------------------------A 325

Query: 666 LFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
           LFRALKTK+DTPKYGLIYH+QL+GQSSTKNKGKM
Sbjct: 326 LFRALKTKKDTPKYGLIYHAQLVGQSSTKNKGKM 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328788216|ref|XP_003251084.1| PREDICTED: nucleolar protein 58-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380025750|ref|XP_003696631.1| PREDICTED: nucleolar protein 58-like [Apis florea] Back     alignment and taxonomy information
>gi|383852932|ref|XP_003701979.1| PREDICTED: nucleolar protein 58-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350417654|ref|XP_003491528.1| PREDICTED: nucleolar protein 58-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|321474032|gb|EFX84998.1| hypothetical protein DAPPUDRAFT_300779 [Daphnia pulex] Back     alignment and taxonomy information
>gi|224055403|ref|XP_002189225.1| PREDICTED: nucleolar protein 58 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|50750286|ref|XP_421942.1| PREDICTED: nucleolar protein 58 [Gallus gallus] Back     alignment and taxonomy information
>gi|45361443|ref|NP_989298.1| NOP58 ribonucleoprotein [Xenopus (Silurana) tropicalis] gi|39794520|gb|AAH64169.1| nucleolar protein 5 [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|77748280|gb|AAI06292.1| LOC398558 protein, partial [Xenopus laevis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
WB|WBGene00020915487 nol-5 [Caenorhabditis elegans 0.333 0.490 0.529 7e-95
UNIPROTKB|E1BUS2 527 NOP58 "Uncharacterized protein 0.258 0.351 0.743 3.8e-93
FB|FBgn0026196 511 nop5 "nop5" [Drosophila melano 0.265 0.371 0.690 7e-92
UNIPROTKB|F1N218 529 NOP58 "Uncharacterized protein 0.265 0.359 0.685 2.7e-86
UNIPROTKB|I3LDD2416 NOP58 "Uncharacterized protein 0.259 0.447 0.694 4.4e-86
UNIPROTKB|Q9Y2X3 529 NOP58 "Nucleolar protein 58" [ 0.259 0.351 0.694 5.7e-86
MGI|MGI:1933184 536 Nop58 "NOP58 ribonucleoprotein 0.258 0.345 0.696 4e-85
RGD|620484 534 Nop58 "NOP58 ribonucleoprotein 0.259 0.348 0.689 6.4e-85
POMBASE|SPAC23G3.06 508 SPAC23G3.06 "U3 snoRNP protein 0.261 0.368 0.659 1.6e-75
TAIR|locus:2096214 533 AT3G05060 "AT3G05060" [Arabido 0.261 0.350 0.633 1.4e-72
WB|WBGene00020915 nol-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 618 (222.6 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
 Identities = 133/251 (52%), Positives = 173/251 (68%)

Query:   400 KLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIK 459
             KL     K+  +I + +SL    D  +N  M   R     H  +L   + ++   +  + 
Sbjct:    85 KLAVGDAKLGNLIKEKLSLNCVHDSSINELMRGVRA----HIEDL---LAEHKEEMNAMN 137

Query:   460 TIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIV 519
              + +AHSL+RYK+KF+P+K+DTMIVQAVSLLDDLDKELNNY+MR REWYGWHFPELGK +
Sbjct:   138 -LAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELNNYVMRVREWYGWHFPELGKTI 196

Query:   520 TDNLKR----NDNSTRDKTSASDLSEILPEDXXXXXXXXXXISMGTEISDDDIENILLLC 575
              D+            R     +DLS ILPE+          ISMGT+ISD D+ +I  LC
Sbjct:   197 QDHQAYAKIIKAIGMRQNCINTDLSSILPEELEEKVKEDAEISMGTDISDIDLIHIKGLC 256

Query:   576 DQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQI 635
             DQV+E+S+YR QL+DYLK+RM A+APNLT+L+GELVGARL++ AGSL++LAK PAST+QI
Sbjct:   257 DQVIELSAYRAQLFDYLKNRMTALAPNLTVLLGELVGARLISHAGSLVSLAKAPASTIQI 316

Query:   636 LGAEKALFRSL 646
             LGAEKALFR+L
Sbjct:   317 LGAEKALFRAL 327
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP
GO:0040007 "growth" evidence=IMP
GO:0002119 "nematode larval development" evidence=IMP
GO:0040010 "positive regulation of growth rate" evidence=IMP
GO:0040019 "positive regulation of embryonic development" evidence=IMP
GO:0040035 "hermaphrodite genitalia development" evidence=IMP
GO:0040027 "negative regulation of vulval development" evidence=IMP
GO:0000003 "reproduction" evidence=IMP
GO:0006898 "receptor-mediated endocytosis" evidence=IMP
UNIPROTKB|E1BUS2 NOP58 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0026196 nop5 "nop5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1N218 NOP58 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDD2 NOP58 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2X3 NOP58 "Nucleolar protein 58" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1933184 Nop58 "NOP58 ribonucleoprotein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620484 Nop58 "NOP58 ribonucleoprotein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPAC23G3.06 SPAC23G3.06 "U3 snoRNP protein Nop58 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2096214 AT3G05060 "AT3G05060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DFW4NOP58_MOUSENo assigned EC number0.65570.30160.4029yesN/A
O04658NOP5A_ARATHNo assigned EC number0.59420.30160.4052yesN/A
Q9QZ86NOP58_RATNo assigned EC number0.65160.30160.4044yesN/A
Q753I4NOP58_ASHGONo assigned EC number0.51630.37430.5224yesN/A
Q9Y2X3NOP58_HUMANNo assigned EC number0.65570.30160.4083yesN/A
Q6FQ21NOP58_CANGANo assigned EC number0.59830.30160.4210yesN/A
Q12499NOP58_YEASTNo assigned EC number0.56600.32680.4579yesN/A
Q9P7S7NOP58_SCHPONo assigned EC number0.62040.30300.4271yesN/A
Q6BIX6NOP58_DEBHANo assigned EC number0.59830.30160.4177yesN/A
Q6CKR8NOP58_KLULANo assigned EC number0.58770.30300.4246yesN/A
Q6CG46NOP58_YARLINo assigned EC number0.61220.30300.4213yesN/A
A3LUT0NOP58_PICSTNo assigned EC number0.59830.30160.4194yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 8e-80
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 3e-51
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 2e-46
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 1e-25
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 2e-24
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 9e-22
pfam0815667 pfam08156, NOP5NT, NOP5NT (NUC127) domain 5e-21
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 1e-20
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 1e-15
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 8e-14
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 6e-09
PLN02967581 PLN02967, PLN02967, kinase 8e-04
pfam00183 529 pfam00183, HSP90, Hsp90 protein 0.004
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  259 bits (664), Expect = 8e-80
 Identities = 130/368 (35%), Positives = 181/368 (49%), Gaps = 63/368 (17%)

Query: 342 SLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKL 401
           SL   +      D  E      E    S  +   + + +E E                  
Sbjct: 2   SLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEGE-----------------K 44

Query: 402 KFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTI 461
           K      DT +  A S  +   +   +      E       EL    +D   + + +   
Sbjct: 45  KLELVVCDTKLGNADSAFEIPSEVGEDLRENAEE----ALGELSS--SDEDDYYRMLL-- 96

Query: 462 GLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTD 521
           GL H LSR K++   DK D +I+QA+  LDD+DKE+N   MR REWYGWHFPEL  +V D
Sbjct: 97  GLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPD 156

Query: 522 NLK----------RNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENI 571
           N +          R + +   K S  DL   LP D+  K+ EAA+ SMG ++S++DI+NI
Sbjct: 157 NEQYAKLVSALGNRENIN---KESLKDLGFALP-DIAIKIAEAAKDSMGADLSEEDIDNI 212

Query: 572 LLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPAS 631
             L + +LE+   R QL +Y++S+M  +APNLT L+G ++GARL++ AG L  LAK PAS
Sbjct: 213 RELAEIILELYELREQLEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPAS 272

Query: 632 TVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQS 691
           T+Q+LGAE                        KALFRALKT   TPKYG+IY S LI +S
Sbjct: 273 TIQVLGAE------------------------KALFRALKTGAKTPKYGVIYQSPLIQKS 308

Query: 692 STKNKGKM 699
               +GK+
Sbjct: 309 PPWQRGKI 316

Length = 395
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|219731 pfam08156, NOP5NT, NOP5NT (NUC127) domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215521 PLN02967, PLN02967, kinase Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 716
KOG2572|consensus 498 100.0
KOG2573|consensus 498 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
KOG2574|consensus 492 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
KOG2573|consensus498 99.93
KOG2572|consensus 498 99.91
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 99.78
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.78
PRK14552414 C/D box methylation guide ribonucleoprotein comple 99.71
PF0815667 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR01297 99.69
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.66
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 99.19
KOG2574|consensus492 98.94
>KOG2572|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.7e-112  Score=891.91  Aligned_cols=370  Identities=61%  Similarity=0.904  Sum_probs=355.6

Q ss_pred             CeEeeccCcceeeeeeccchhccchhhHHHhcCChhhhhcceeeccccCCCCHHHHHHHHHHhhccccChHHHHHHHHhc
Q psy10021          1 MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLV   80 (716)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (716)
                      |+|||||++|||+||++||+++++.|+||+.|.||++|.+++||++|+||.+|.+||+++++++||++++.|++||+.+.
T Consensus         1 mlvL~Eta~Gya~fk~~de~kl~~v~~l~~ef~s~e~a~~~~kl~~f~kf~~ta~alea~~~l~eGkvs~~L~k~lk~~~   80 (498)
T KOG2572|consen    1 MLVLFETAAGYALFKVLDEKKLANVDDLWKEFSSAEKALKMVKLVAFEKFDSTAEALEAVTALAEGKVSSGLEKFLKLNK   80 (498)
T ss_pred             CeEEEeeccceeeeeecchhhHhhHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhHHHHHHhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999983


Q ss_pred             cccccceeEeeccCCcCcccccccccccccCCCCCCchhhhhccccchhhcccCCCCCCCCccccccccCCCcceeeecC
Q psy10021         81 SSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKKPKKSSSSSKHHHHATSKKNASVTHAT  160 (716)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (716)
                         ..+.|+|+|+|      ||..|                           ++                ++++.|+|+ 
T Consensus        81 ---~~etLaVaD~K------Lgn~i---------------------------~e----------------kL~~~~v~~-  107 (498)
T KOG2572|consen   81 ---KKETLAVADAK------LGNAI---------------------------KE----------------KLSINCVHD-  107 (498)
T ss_pred             ---cCCeeeeccHH------HhHHH---------------------------HH----------------hhcceeecc-
Confidence               68899999999      99999                           43                699999999 


Q ss_pred             CCcccCCCcchhHHhHhHHHHhhhhhhcccccCCCChHHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHhhhhhcc
Q psy10021        161 PSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDAL  240 (716)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r~d~~  240 (716)
                                                        +.+++||||||.|+..||                            
T Consensus       108 ----------------------------------~~v~el~RgiRs~l~el~----------------------------  125 (498)
T KOG2572|consen  108 ----------------------------------SAVMELLRGIRSQLTELI----------------------------  125 (498)
T ss_pred             ----------------------------------hhHHHHHHHHHHHHHHHh----------------------------
Confidence                                              999999999999999999                            


Q ss_pred             CCCcccccchhhhHHHHHHHHHHhhcccccCCcchHHHHHHHHhhhhhhhhhhchhhccccccCCCCCCCCccccccccc
Q psy10021        241 GEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKN  320 (716)
Q Consensus       241 ~~~~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~k~~~~a~~~~e~~~~p~~~~~~k~k~~~  320 (716)
                                                     +|+.                                             
T Consensus       126 -------------------------------~g~~---------------------------------------------  129 (498)
T KOG2572|consen  126 -------------------------------SGLN---------------------------------------------  129 (498)
T ss_pred             -------------------------------ccCC---------------------------------------------
Confidence                                           8873                                             


Q ss_pred             ccccccccccCCCCCchhhhhhhhHhhhhccccCCCCccccCchhhHHhHHHhhhhcccccCCCCccchhhhhhhhcccc
Q psy10021        321 KNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYK  400 (716)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~g~~~~~~~k~~~~~~~~~v~~~~~~~~~lgLaHslSR~K  400 (716)
                                  ..|++                                                 .|.|||+|+++|||
T Consensus       130 ------------~~dl~-------------------------------------------------~msLglaHslar~K  148 (498)
T KOG2572|consen  130 ------------DSDLA-------------------------------------------------AMSLGLAHSLARYK  148 (498)
T ss_pred             ------------hhhhh-------------------------------------------------HHHHHHHHHHHhhh
Confidence                        44566                                                 99999999999999


Q ss_pred             cccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchh
Q psy10021        401 LKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVD  480 (716)
Q Consensus       401 lkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D  480 (716)
                      |+|+|+++|+||||||+||||||||+|+|.||||||||||||||.+|+.||..|+++|..||+                 
T Consensus       149 lkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~-----------------  211 (498)
T KOG2572|consen  149 LKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGV-----------------  211 (498)
T ss_pred             cccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhH-----------------
Confidence            999999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChhHHHHHHHHHhhhcC
Q psy10021        481 TMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMG  560 (716)
Q Consensus       481 ~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAstSmG  560 (716)
                                                                        |.+....||++|||+++...+..+|++|||
T Consensus       212 --------------------------------------------------r~~~a~~d~sEil~eeiE~~~k~aAeiSMg  241 (498)
T KOG2572|consen  212 --------------------------------------------------RCNAASLDFSEILPEEIEAELKEAAEISMG  241 (498)
T ss_pred             --------------------------------------------------hhhhhcccHHhhchHHHHHHHHhhhhhhhc
Confidence                                                              556677889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhH
Q psy10021        561 TEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEK  640 (716)
Q Consensus       561 teLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~K  640 (716)
                      ++|++.|+.+|..+|++|+++.+||.+|.+||.+||..||||||+|||++||||||+|||||.||||+|+||        
T Consensus       242 teis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~St--------  313 (498)
T KOG2572|consen  242 TEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPAST--------  313 (498)
T ss_pred             ccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhH--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             HHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-ccccccc
Q psy10021        641 ALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSASRAR  713 (716)
Q Consensus       641 kl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~~r~~  713 (716)
                                      ||||||||||||||||+++|||||+|||++||+|+||++||||+|+||+| +.+.|.|
T Consensus       314 ----------------IQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~D  371 (498)
T KOG2572|consen  314 ----------------IQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARID  371 (498)
T ss_pred             ----------------HHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHH
Confidence                            99999999999999999999999999999999999999999999999999 4555654

>KOG2573|consensus Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2574|consensus Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>KOG2573|consensus Back     alignment and domain information
>KOG2572|consensus Back     alignment and domain information
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [] Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>KOG2574|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
3id5_A388 Crystal Structure Of Sulfolobus Solfataricus CD RNP 1e-31
3icx_A255 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 6e-30
2nnw_A376 Alternative Conformations Of Nop56/58-fibrillarin C 4e-28
3nmu_A379 Crystal Structure Of Substrate-Bound Halfmer Box CD 4e-28
3nvk_A376 Structural Basis For Substrate Placement By An Arch 4e-28
3nvm_A371 Structural Basis For Substrate Placement By An Arch 2e-24
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 5e-16
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 5e-16
3gqu_A169 Pyrococcus Horikoshii Nop5 Rna Binding Domain Lengt 1e-12
3id6_A268 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 1e-12
1nt2_B258 Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt 5e-08
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 29/241 (12%)
Query: 463 LAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDN 522
           L+   +R KL+ +  K D + +QAV  +DD+DK +N +  R REWY  HFPEL K++ D+
Sbjct: 120 LSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDH 179
Query: 523 LKRNDNSTR--DK--TSASDLSEI-LPEDXXXXXXXXXXISMGTEISDDDIENILLLCDQ 577
            +     +R  D+   +   L E+   E            S+G +IS+DD+  + ++ + 
Sbjct: 180 EEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANT 239
Query: 578 VLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILG 637
           +L++ + R  L +YL+  M  VAPN+T L+G  +GARL++ AGSL  LAK PA       
Sbjct: 240 ILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPA------- 292
Query: 638 AEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKG 697
                            ST+Q+LGAEKALFRAL++    PK+G+I+    I  S    +G
Sbjct: 293 -----------------STIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRG 335
Query: 698 K 698
           K
Sbjct: 336 K 336
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (135-380) Length = 255 Back     alignment and structure
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 376 Back     alignment and structure
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 379 Back     alignment and structure
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 376 Back     alignment and structure
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 371 Back     alignment and structure
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain Length = 169 Back     alignment and structure
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262) And Fibrillarin Complex Length = 268 Back     alignment and structure
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 2e-66
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 3e-12
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 2e-62
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 3e-10
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 9e-62
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 1e-09
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 1e-60
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 1e-09
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 8e-50
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 9e-36
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 2e-08
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 2e-04
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 7e-32
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 1e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 6e-04
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 8e-04
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Length = 260 Back     alignment and structure
 Score =  219 bits (558), Expect = 2e-66
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 30/233 (12%)

Query: 473 KFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNL------KRN 526
                    +IV A +L  +++ ELN      R+ Y   FPEL  +V + L      K  
Sbjct: 10  PVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL 69

Query: 527 DNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRG 586
            NS     +  +L +IL       V   A  + G ++S++++E +   CD  LE+++ + 
Sbjct: 70  GNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKH 129

Query: 587 QLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSL 646
           ++Y+Y++SRM  +APNL+I++G    A+++  A                          L
Sbjct: 130 RIYEYVESRMSFIAPNLSIIIGASTAAKIMGVA------------------------GGL 165

Query: 647 LNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
            NL+K PA  + +LGA++       +    P  G IYHS ++       + K 
Sbjct: 166 TNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKA 218
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Length = 260 Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Length = 376 Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Length = 376 Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255 Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255 Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388 Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 99.86
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 99.85
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 99.79
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 99.72
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 99.62
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 99.06
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 98.98
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-87  Score=714.06  Aligned_cols=237  Identities=38%  Similarity=0.590  Sum_probs=229.4

Q ss_pred             cchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhccc
Q psy10021        387 LNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS  466 (716)
Q Consensus       387 ~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHS  466 (716)
                      .+++||+|++||+||+|+++++|+||||||+++||||+|||.|+||||||||||||||.++|+||.+|+++|+.+|+   
T Consensus       115 ~~~~~l~~~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ign---  191 (388)
T 3pla_A          115 NFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGD---  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCS---
T ss_pred             HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcC---
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             chhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhcc-CCh
Q psy10021        467 LSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEI-LPE  545 (716)
Q Consensus       467 LSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseI-Lp~  545 (716)
                                                                                      +.+++..+|.++ +|+
T Consensus       192 ----------------------------------------------------------------r~~~~~~~l~~l~l~~  207 (388)
T 3pla_A          192 ----------------------------------------------------------------RGFLTIDSLKELGFNE  207 (388)
T ss_dssp             ----------------------------------------------------------------GGGCCHHHHHTTTCCH
T ss_pred             ----------------------------------------------------------------cccCChhhHhhcCCCH
Confidence                                                                            345566677787 899


Q ss_pred             hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhh
Q psy10021        546 DVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNL  625 (716)
Q Consensus       546 e~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nL  625 (716)
                      ++++.|.++|++|||++||++|+++|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+|
T Consensus       208 ~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~L  287 (388)
T 3pla_A          208 QRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDEL  287 (388)
T ss_dssp             HHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhccc
Q psy10021        626 AKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQ  705 (716)
Q Consensus       626 AKmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~a  705 (716)
                      |||||||                        ||||||||||||+|+|+++||||||||||++||++|+++||||+|+||+
T Consensus       288 AK~PAst------------------------IQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAa  343 (388)
T 3pla_A          288 AKMPAST------------------------IQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAA  343 (388)
T ss_dssp             HTSCHHH------------------------HTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHH
T ss_pred             hhCChHH------------------------HHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHH
Confidence            9999999                        9999999999999999999999999999999999999999999999999


Q ss_pred             c-cccccccc
Q psy10021        706 P-GSASRARV  714 (716)
Q Consensus       706 K-~s~~r~~~  714 (716)
                      | +.+||+|+
T Consensus       344 K~aLAARiD~  353 (388)
T 3pla_A          344 KLAIAARVDA  353 (388)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhcc
Confidence            9 66778876
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 716
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 4e-77
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 2e-13
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 5e-55
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 1e-18
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 6e-11
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  245 bits (628), Expect = 4e-77
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 32/231 (13%)

Query: 475 SPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNL------KRNDN 528
           +P+    +IV A +L  +++ ELN      R+ Y   FPEL  +V + L      K   N
Sbjct: 3   APE--YRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 60

Query: 529 STRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQL 588
           S     +  +L +IL       V   A  + G ++S++++E +   CD  LE+++ + ++
Sbjct: 61  SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 120

Query: 589 YDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLN 648
           Y+Y++SRM  +APNL+I++G    A+++  AG L NL+K PA  +               
Sbjct: 121 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIM-------------- 166

Query: 649 LAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
                     +LGA++       +    P  G IYHS ++       + K 
Sbjct: 167 ----------LLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKA 207
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 99.62
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 99.56
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-68  Score=533.73  Aligned_cols=220  Identities=28%  Similarity=0.483  Sum_probs=198.7

Q ss_pred             CccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHH
Q psy10021        406 DKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQ  485 (716)
Q Consensus       406 ~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQ  485 (716)
                      +..++||||+|+++|+||+|||.|+||+|||||||||||.++|+|+.+|+++|+.+|++.++++                
T Consensus         3 ~pEy~lIvq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~----------------   66 (249)
T d2ozbb1           3 APEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCK----------------   66 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCT----------------
T ss_pred             ChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCcccccc----------------
Confidence            3467899999999999999999999999999999999999999999999999999999543322                


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChhHHHHHHHHHhhhcCCCCCH
Q psy10021        486 AVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISD  565 (716)
Q Consensus       486 AIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAstSmGteLSe  565 (716)
                                                                       ...+|.++|++++++.|.++|++|||.+|++
T Consensus        67 -------------------------------------------------~~~~l~~~l~~~~~~~i~~aa~~s~G~~ls~   97 (249)
T d2ozbb1          67 -------------------------------------------------NNENLQQILTNATIMVVSVTASTTQGQQLSE   97 (249)
T ss_dssp             -------------------------------------------------TCTTGGGTSCHHHHHHHHHHHHSCCCCCCCH
T ss_pred             -------------------------------------------------chhHHHHhCCHHHHHHHHHHhcccCCCCCCH
Confidence                                                             2357888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhHHHhhh
Q psy10021        566 DDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRS  645 (716)
Q Consensus       566 eDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~Kkl~~~  645 (716)
                      +|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.+|||||++||||.+||+|||||             
T Consensus        98 ~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk~Past-------------  164 (249)
T d2ozbb1          98 EELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACN-------------  164 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTSCHHH-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHhCChHH-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999             


Q ss_pred             hhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-cccccccc
Q psy10021        646 LLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSASRARV  714 (716)
Q Consensus       646 L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~~r~~~  714 (716)
                                 ||+|||||++|+||++++.+|||||||||++|+++|+++||||+||||+| +.+||+|+
T Consensus       165 -----------Iq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~  223 (249)
T d2ozbb1         165 -----------IMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDS  223 (249)
T ss_dssp             -----------HTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence                       99999999999999999999999999999999999999999999999999 66788886
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure