Psyllid ID: psy1002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MFVGKQTTMRYPRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRKGVF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccccccEEEEccHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHccccccccEEEEEEEEEccccEEEEEccccccccccccEEcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mfvgkqttmryprLINSIQSCkysalekpkrFYKKVGilesngdyeisldhrklktpngvlfkvssEPLALAIAAEWDAQHETIQRSTMHLTAICNTvidnpnrltkFDLVQNIINFLDTDTILYHANFFLRKGVF
Flexible Loop (DISEMBL)
mfvgkqttmryprlinSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRKGVF
Low Complexity Region (SEG)
MFVGKQTTMRYPRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRKGVF
Disordered region (IsUnstruct)
*********RYPRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRK***
Disordered Region (DISOPRED)
*******************************FYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLR****
Disordered Region (DISEMBL)
********MRYPRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRKGVF
Disordered Region (DISPRO)
*************LINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRKG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFVGKQTTMRYPRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFLRKGVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q1LZ96	289	ATP synthase mitochondria	yes	N/A	0.845	0.397	0.487	1e-27
Q8N5M1	289	ATP synthase mitochondria	yes	N/A	0.757	0.356	0.533	2e-27
Q91YY4	289	ATP synthase mitochondria	yes	N/A	0.727	0.342	0.545	4e-27
Q9UT16	291	Protein atp12, mitochondr	yes	N/A	0.764	0.357	0.369	8e-08

>sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 12  PRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLAL 71
           P+L   I++  Y    + KRFY+ V I +  G +EI+LDHRKL+TP G LF V SE LA+
Sbjct: 31  PKLPTPIRA--YVPPAERKRFYQNVSISQGEGGFEINLDHRKLRTPQGKLFTVPSEALAI 88

Query: 72  AIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           A+A EWD+Q +TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDT+ Y   
Sbjct: 89  AVATEWDSQQDTIKMYTMHLTTLCNTSLDNPTQRDKDQLIRAAVKFLDTDTVCYRVE 145

May play a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase).
Bos taurus (taxid: 9913)

>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query: 23  YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
           Y+   + KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +
Sbjct: 40  YAPPTERKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQD 99

Query: 83  TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
           TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct: 100 TIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 142

May play a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase).

Homo sapiens (taxid: 9606)

>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus musculus GN=Atpaf2 PE=2 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 70/99 (70%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +TI+  TM
Sbjct: 47  KRFYQNVSISQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKFYTM 106

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           HLT +CNT +DNP + +K  L++  + FLDTDTI Y   
Sbjct: 107 HLTTLCNTSLDNPTQRSKDQLIRAAVKFLDTDTICYRVE 145

May play a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase).

Mus musculus (taxid: 10090)

>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp12 PE=3 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 24  SALEKP--KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALA--IAAEWDA 79
           S L +P  +RF+K       NG+  I LD R LK+P+G + KV  E   LA  IA EWD 
Sbjct: 31  SPLPQPSFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDR 90

Query: 80  QHET-IQRSTMHLTAICNTVIDNPN--RLTKFDLVQNIINFLDTDTILYHA 127
              T +++  + +T++ +  ID     +  K  L   +I FLDTDTIL ++
Sbjct: 91  LPSTSVRQHNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYS 141

Essential for the assembly of the mitochondrial F1-F0 complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
189237014	247	PREDICTED: similar to lethal (2) k14505	0.727	0.400	0.666	3e-33
270007362	279	hypothetical protein TcasGA2_TC013923 [T	0.727	0.354	0.666	4e-33
170036765	263	ATP synthase mitochondrial F1 complex as	0.727	0.376	0.626	2e-31
158299506	270	AGAP008876-PA [Anopheles gambiae str. PE	0.735	0.370	0.6	5e-31
194760887	263	GF14321 [Drosophila ananassae] gi|190616	0.867	0.448	0.533	7e-31
307173921	282	ATP synthase mitochondrial F1 complex as	0.727	0.351	0.616	1e-30
345480082	278	PREDICTED: ATP synthase mitochondrial F1	0.889	0.435	0.546	1e-30
157125234	269	hypothetical protein AaeL_AAEL010141 [Ae	0.735	0.371	0.61	5e-30
380022849	248	PREDICTED: ATP synthase mitochondrial F1	0.727	0.399	0.616	7e-30
195115557	278	GI17323 [Drosophila mojavensis] gi|19391	0.720	0.352	0.602	7e-30

>gi|189237014|ref|XP_967508.2| PREDICTED: similar to lethal (2) k14505 CG8674-PA [Tribolium castaneum]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 78/99 (78%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFY+  GIL S G YE++LD RKLKTP G LF V SEPLA+A+A EWD+Q E I +S M
Sbjct: 6   KRFYRNTGILRSEGKYEVTLDQRKLKTPKGNLFSVESEPLAIAVATEWDSQKENIIQSKM 65

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           HLT +CNTVIDNPN LTK+D+V  I N+LDTDTIL+ AN
Sbjct: 66  HLTTLCNTVIDNPNNLTKYDMVDYITNYLDTDTILFQAN 104

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007362|gb|EFA03810.1| hypothetical protein TcasGA2_TC013923 [Tribolium castaneum]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 78/99 (78%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFY+  GIL S G YE++LD RKLKTP G LF V SEPLA+A+A EWD+Q E I +S M
Sbjct: 38  KRFYRNTGILRSEGKYEVTLDQRKLKTPKGNLFSVESEPLAIAVATEWDSQKENIIQSKM 97

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           HLT +CNTVIDNPN LTK+D+V  I N+LDTDTIL+ AN
Sbjct: 98  HLTTLCNTVIDNPNNLTKYDMVDYITNYLDTDTILFQAN 136

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036765|ref|XP_001846232.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Culex quinquefasciatus] gi|167879675|gb|EDS43058.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Culex quinquefasciatus]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 79/99 (79%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFY+K GI+ SNG YEI+LD RKLKTP G  F V SEPLA+A+A EWDAQ ETI RS+M
Sbjct: 19  KRFYRKTGIISSNGRYEITLDQRKLKTPKGAPFYVESEPLAVAVATEWDAQKETIDRSSM 78

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           HLTA+ +TV+DNP+ L K D+V  ++N++ TD ILYH++
Sbjct: 79  HLTALSSTVLDNPSGLKKMDIVNYLVNYISTDAILYHSS 117

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299506|ref|XP_319622.4| AGAP008876-PA [Anopheles gambiae str. PEST] gi|157013551|gb|EAA14894.5| AGAP008876-PA [Anopheles gambiae str. PEST]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 81/100 (81%)

Query: 29  PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRST 88
           PKRFY+  G++ SNG +EI+LD RKLKTP G+ F V SEPLA+AIA EWDAQ + I RS+
Sbjct: 28  PKRFYRNTGVISSNGRFEITLDSRKLKTPRGLPFYVESEPLAVAIAMEWDAQKDVIDRSS 87

Query: 89  MHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           MHLTA+ +TVIDNPN L K D+V  ++N+++TDT+L+H++
Sbjct: 88  MHLTALSSTVIDNPNSLQKHDMVNYLVNYINTDTVLFHSS 127

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194760887|ref|XP_001962664.1| GF14321 [Drosophila ananassae] gi|190616361|gb|EDV31885.1| GF14321 [Drosophila ananassae]

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 82/118 (69%)

Query: 9   MRYPRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEP 68
           MR+     ++ +C       PKRFYKK  +L S+G YE+ LDHRKLKTP G  F V SEP
Sbjct: 1   MRFVLYGTAVVTCHKRGTTPPKRFYKKTSVLSSDGGYEVVLDHRKLKTPKGTPFTVRSEP 60

Query: 69  LALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYH 126
           LA+A+A E+DAQ E I+RS MHL+A+C T IDNPN L K D+V  ++NF+ TDT+L+ 
Sbjct: 61  LAIAVATEFDAQKEHIERSRMHLSALCFTAIDNPNNLNKLDMVNYLLNFIPTDTVLFQ 118

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173921|gb|EFN64669.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Camponotus floridanus]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 81/99 (81%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFY++  IL S   +EI+LD RKLKTP G +F+V+S+PLALA+AAEWDAQ ETI R +M
Sbjct: 37  KRFYRRTNILSSGDKFEITLDQRKLKTPQGRVFEVNSKPLALAVAAEWDAQKETIDRGSM 96

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           HLT++CNTV+DNP+  TK DLV +I+N L+ DTIL+H++
Sbjct: 97  HLTSLCNTVLDNPHNYTKIDLVNHIVNSLEMDTILFHSS 135

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480082|ref|XP_003424082.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2-like [Nasonia vitripennis]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 96/128 (75%), Gaps = 7/128 (5%)

Query: 5   KQTTM---RYPRLINSIQSCKYSALEKPKRFYKKVGILESNGD-YEISLDHRKLKTPNGV 60
           K  TM   +Y ++++    C++ A    KRFY+K GIL SNGD YEI+LD ++LKTP G 
Sbjct: 3   KSVTMFSSKYRKIVSFPTQCRHMA--TVKRFYRKTGIL-SNGDKYEITLDQKRLKTPLGK 59

Query: 61  LFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDT 120
           +F+V S+PLALAIA EWD+Q + I R+ MHLTA+C+TVIDNPN+LTK D+   I+NFL+T
Sbjct: 60  VFEVKSKPLALAIAHEWDSQKDVINRNLMHLTALCSTVIDNPNKLTKQDIASYIVNFLET 119

Query: 121 DTILYHAN 128
           DT+L+ +N
Sbjct: 120 DTLLFQSN 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125234|ref|XP_001654255.1| hypothetical protein AaeL_AAEL010141 [Aedes aegypti] gi|108873688|gb|EAT37913.1| AAEL010141-PA [Aedes aegypti]

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%)

Query: 29  PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRST 88
           PKRFY++ GI+ SNG +EI+LD RKLKTP G  F V SEPLA+AIA EWDAQ + I RS 
Sbjct: 27  PKRFYRQTGIITSNGKFEITLDQRKLKTPKGAPFFVESEPLAIAIATEWDAQKDVIDRSR 86

Query: 89  MHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           MHLTA+ +TVIDNPN L K D+V  ++N+  TD IL+ +N
Sbjct: 87  MHLTALSSTVIDNPNNLQKADIVNYLVNYASTDAILFQSN 126

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022849|ref|XP_003695248.1| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2-like [Apis florea]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 78/99 (78%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFY+K  IL S+G YEI+LD RKLKTP G +F+V S+PLALAIA EWD Q + I +S M
Sbjct: 5   KRFYRKTNILSSSGKYEITLDQRKLKTPQGKIFQVDSKPLALAIATEWDMQKQIIDKSNM 64

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
           HLTA+CNTVIDNP+  TK D+V  I+N L+ DT+L+H++
Sbjct: 65  HLTALCNTVIDNPHNYTKEDMVNYIVNSLEMDTLLFHSS 103

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115557|ref|XP_002002323.1| GI17323 [Drosophila mojavensis] gi|193912898|gb|EDW11765.1| GI17323 [Drosophila mojavensis]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 78/98 (79%)

Query: 29  PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRST 88
           PKRFYK   +L ++  YE++LDHRKLKTPNG LF V SEPLA+A+A E+DAQ E I+RS 
Sbjct: 36  PKRFYKTTNVLSTDSGYEVTLDHRKLKTPNGTLFTVKSEPLAIAVATEFDAQKEHIERSR 95

Query: 89  MHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYH 126
           MH++A+C T IDNPN+LTK D+V  ++NF+ TDT+L+ 
Sbjct: 96  MHISALCFTAIDNPNKLTKPDMVNYLLNFIATDTVLFQ 133

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0021856	279	l(2)k14505 "lethal (2) k14505"	0.713	0.347	0.587	3.1e-28
UNIPROTKB|Q1LZ96	289	ATPAF2 "ATP synthase mitochond	0.823	0.387	0.5	1.9e-26
UNIPROTKB|C9J2Q2	205	ATPAF2 "ATP synthase mitochond	0.757	0.502	0.533	3.2e-26
UNIPROTKB|E9PMH4	208	ATPAF2 "ATP synthase mitochond	0.757	0.495	0.533	3.2e-26
UNIPROTKB|Q8N5M1	289	ATPAF2 "ATP synthase mitochond	0.757	0.356	0.533	3.2e-26
UNIPROTKB|F1PRK7	285	ATPAF2 "Uncharacterized protei	0.757	0.361	0.533	4e-26
UNIPROTKB|J9P3Y1	244	ATPAF2 "Uncharacterized protei	0.705	0.393	0.562	6.6e-26
MGI|MGI:2180561	289	Atpaf2 "ATP synthase mitochond	0.705	0.332	0.562	6.6e-26
UNIPROTKB|E1BUZ7	281	ATPAF2 "Uncharacterized protei	0.757	0.366	0.514	8.4e-26
RGD|1305161	298	Atpaf2 "ATP synthase mitochond	0.705	0.322	0.562	8.4e-26

FB|FBgn0021856 l(2)k14505 "lethal (2) k14505" [Drosophila melanogaster (taxid:7227)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 57/97 (58%), Positives = 73/97 (75%)

Query:    29 PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRST 88
             PKRFYKK  +   +  YE+ LDHRKLKTP G  F V SEPLA+A+A E+DAQ E I+RS 
Sbjct:    37 PKRFYKKTSVASGDSGYEVVLDHRKLKTPKGTPFIVRSEPLAIAVATEFDAQKENIERSR 96

Query:    89 MHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             MHL+A+C T IDNPN L+K D+V  ++NF+ TDT+L+
Sbjct:    97 MHLSALCFTAIDNPNHLSKLDMVNYLLNFIATDTVLF 133

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|Q1LZ96 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 57/114 (50%), Positives = 78/114 (68%)

Query:    12 PRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLAL 71
             P+L   I++  Y    + KRFY+ V I +  G +EI+LDHRKL+TP G LF V SE LA+
Sbjct:    31 PKLPTPIRA--YVPPAERKRFYQNVSISQGEGGFEINLDHRKLRTPQGKLFTVPSEALAI 88

Query:    72 AIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             A+A EWD+Q +TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDT+ Y
Sbjct:    89 AVATEWDSQQDTIKMYTMHLTTLCNTSLDNPTQRDKDQLIRAAVKFLDTDTVCY 142

GO:0005739 "mitochondrion" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|C9J2Q2 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query:    23 YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
             Y+   + KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +
Sbjct:    40 YAPPTERKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQD 99

Query:    83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct:   100 TIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 142

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E9PMH4 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query:    23 YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
             Y+   + KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +
Sbjct:    40 YAPPTERKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQD 99

Query:    83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct:   100 TIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 142

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|Q8N5M1 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query:    23 YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
             Y+   + KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +
Sbjct:    40 YAPPTERKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQD 99

Query:    83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct:   100 TIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 142

GO:0005739 "mitochondrion" evidence=IEA

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

UNIPROTKB|F1PRK7 ATPAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query:    23 YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
             Y+   + KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +
Sbjct:    36 YAPPTERKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQD 95

Query:    83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             TI+  TMHLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct:    96 TIKFYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 138

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|J9P3Y1 ATPAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/96 (56%), Positives = 69/96 (71%)

Query:    30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
             KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +TI+  TM
Sbjct:     2 KRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKFYTM 61

Query:    90 HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             HLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct:    62 HLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 97

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

MGI|MGI:2180561 Atpaf2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Mus musculus (taxid:10090)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/96 (56%), Positives = 70/96 (72%)

Query:    30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
             KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +TI+  TM
Sbjct:    47 KRFYQNVSISQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKFYTM 106

Query:    90 HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             HLT +CNT +DNP + +K  L++  + FLDTDTI Y
Sbjct:   107 HLTTLCNTSLDNPTQRSKDQLIRAAVKFLDTDTICY 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

UNIPROTKB|E1BUZ7 ATPAF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 53/103 (51%), Positives = 72/103 (69%)

Query:    23 YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
             Y+   + KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +
Sbjct:    32 YAPPAERKRFYQNVSISQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQKD 91

Query:    83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             TI+  TMHLT +CNT +DNP +  K  L++  + FL+TDT+ Y
Sbjct:    92 TIKFYTMHLTTLCNTALDNPTQRNKVQLIRAAVKFLETDTVCY 134

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

RGD|1305161 Atpaf2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 54/96 (56%), Positives = 69/96 (71%)

Query:    30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
             KRFY+ V I +  G +EI+LDHRKLKTP   LF V SE LA+A+A EWD+Q +TI+  TM
Sbjct:    56 KRFYQNVSISQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKFYTM 115

Query:    90 HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
             HLT +CNT +DNP +  K  L++  + FLDTDTI Y
Sbjct:   116 HLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 151

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016607 "nuclear speck" evidence=IEA;ISO

GO:0043461 "proton-transporting ATP synthase complex assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N5M1	ATPF2_HUMAN	No assigned EC number	0.5339	0.7573	0.3564	yes	N/A
Q91YY4	ATPF2_MOUSE	No assigned EC number	0.5454	0.7279	0.3425	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
pfam07542	122	pfam07542, ATP12, ATP12 chaperone protein	2e-40
COG5387	264	COG5387, COG5387, Chaperone required for the assem	2e-19

>gnl|CDD|203677 pfam07542, ATP12, ATP12 chaperone protein

 Score =  131 bits (331), Expect = 2e-40
 Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 30  KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
           KRFYK+V + E  G + + LD R +KTP      V SE LA AIAAEWDAQ E I  +TM
Sbjct: 1   KRFYKEVSVEEEEGGFAVLLDGRPVKTPAKNPLAVPSEALAEAIAAEWDAQGEVIDPATM 60

Query: 90  HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHA 127
            LT + NT ID      +  ++++++ +LDTD + Y A
Sbjct: 61  PLTRLANTAIDLVA-EDRDAVIEDLLRYLDTDLLCYRA 97

Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with amino-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. Length = 122

>gnl|CDD|227677 COG5387, COG5387, Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 80.6 bits (199), Expect = 2e-19
 Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 29  PKRFYKKVGILES-NGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           PKRFYKK    +   G + I LD R LKTP G    V +E LA  +A EWDAQ E+I   
Sbjct: 32  PKRFYKKATAADVEKGGFAIQLDGRTLKTPAGKPLVVPTEALAYLLALEWDAQSESIDPH 91

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHA 127
           +M LT + NT ID         + + I+ FLDTD + Y A
Sbjct: 92  SMPLTRLVNTAIDGI-AEDSQAVFEQILRFLDTDLLCYRA 130

Length = 264

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF07542	122	ATP12: ATP12 chaperone protein; InterPro: IPR01141	100.0
COG5387	264	Chaperone required for the assembly of the mitocho	100.0
KOG3015|consensus	283		100.0

>PF07542 ATP12: ATP12 chaperone protein; InterPro: IPR011419 This entry represents a group of ATPase F1F0-assembly proteins, including ATP12 and ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2)

Probab=100.00  E-value=6.8e-48  Score=287.07  Aligned_cols=101  Identities=47%  Similarity=0.680  Sum_probs=84.9

Q ss_pred             CccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccchhhhhhhhhcCCCCCCHHH
Q psy1002          30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFD  109 (136)
Q Consensus        30 kRFyK~v~V~~~~gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MPLT~La~tAID~~~~~~r~~  109 (136)
                      |||||+|+|.+.++||+|+||||+||||+|++|+|||++||++||+||++|++.|+|++||||+||+||||++.+ +|+.
T Consensus         1 KRFyk~v~v~~~~~g~~V~LDgR~lkTP~~~~l~vps~~LA~avA~EW~~Q~~~i~p~~MPLT~L~~taiD~~~~-~r~~   79 (122)
T PF07542_consen    1 KRFYKEVSVEENDGGFQVLLDGRPLKTPAGNPLVVPSEALAEAVAAEWDAQGEYIKPHTMPLTSLANTAIDRVAE-DREA   79 (122)
T ss_dssp             B---S-EEEEEETTSEEEEETTEE-BETTSEB--BSSHHHHHHHHHHHHT-SSB--GGG-HHHHHHHHHHHTTCC-CHHH
T ss_pred             CCCcceeeEEecCCCEEEEeCCCCCCCCCCCeeEcCcHHHHHHHHHHHHhhhcccCcccccHHHHHHHHHhccch-hHHH
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999987 8999


Q ss_pred             HHHHHHhhhCCCeEEEeecCcc
Q psy1002         110 LVQNIINFLDTDTILYHANFFL  131 (136)
Q Consensus       110 v~~~ll~Yl~TDtlcyra~~~~  131 (136)
                      ++++|++|++||+||||+++++
T Consensus        80 ~~~~il~yl~tDtlc~r~~~~~  101 (122)
T PF07542_consen   80 VIDEILRYLDTDTLCYRAPEPE  101 (122)
T ss_dssp             HHHHHHHHHHC-CCCEE--SSH
T ss_pred             HHHHHHHHcCCCeEEEeCCCcH
Confidence            9999999999999999999875

These proteins are essential for the assembly of the mitochondrial F1-F0 complex. Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with N-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment []. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0043461 proton-transporting ATP synthase complex assembly; PDB: 2R6I_B 2ZD2_B 2P4X_B 2R31_A.

>COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-39  Score=262.75  Aligned_cols=123  Identities=40%  Similarity=0.568  Sum_probs=113.5

Q ss_pred             ccccccccchhhhhhhhccccCCCCCCccceeeeeEEeC-CcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhccc
Q psy1002           4 GKQTTMRYPRLINSIQSCKYSALEKPKRFYKKVGILESN-GDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE   82 (136)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~kRFyK~v~V~~~~-gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e   82 (136)
                      |++-+-.-|.+-.|.+..+|    .+|||||++++.+.+ |||.|+||||++|||+||+|+||+++||++||.||++|.+
T Consensus        11 ~~llSd~t~~~~~~~q~q~p----lpkrfyk~a~aa~ve~Gg~aiqLDGR~~KtPa~k~l~vpt~~LA~lla~EWdaqs~   86 (264)
T COG5387          11 GPLLSDKTPILRAQTQMQKP----LPKRFYKKATAADVEKGGFAIQLDGRTLKTPAGKPLVVPTEALAYLLALEWDAQSE   86 (264)
T ss_pred             CccCCCCcHHHhhhHhhcCc----chHHHHHHhhcCccccCceEEEeCCCCCCCCCCCceeCcHHHHHHHHHHHhhcchh
Confidence            55666667777778888777    489999999999876 9999999999999999999999999999999999999999


Q ss_pred             CcCCCccchhhhhhhhhcCCCCCCHHHHHHHHHhhhCCCeEEEeecCcc
Q psy1002          83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFL  131 (136)
Q Consensus        83 ~I~p~~MPLT~La~tAID~~~~~~r~~v~~~ll~Yl~TDtlcyra~~~~  131 (136)
                      +|+||+||+|+|++||||+... +++.+.++|++|++||+||||++++.
T Consensus        87 ~I~~~~mP~TrlV~taID~ia~-~~~~v~~~ilrf~~tDlLcYra~sp~  134 (264)
T COG5387          87 SIDPHSMPLTRLVNTAIDGIAE-DSQAVFEQILRFLDTDLLCYRAESPF  134 (264)
T ss_pred             ccCcccCcHHHHHHHHHHhhcc-cHHHHHHHHHHHccCCeeEecCCCHH
Confidence            9999999999999999999976 89999999999999999999998863

>KOG3015|consensus

Probab=100.00  E-value=4.6e-34  Score=236.70  Aligned_cols=109  Identities=48%  Similarity=0.698  Sum_probs=103.5

Q ss_pred             CCCCCccceeeeeEEeC--CcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcc-cCcCCCccchhhhhhhhhcCC
Q psy1002          26 LEKPKRFYKKVGILESN--GDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQH-ETIQRSTMHLTAICNTVIDNP  102 (136)
Q Consensus        26 ~~~~kRFyK~v~V~~~~--gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~-e~I~p~~MPLT~La~tAID~~  102 (136)
                      .+..|||||+|++...+  |||.|.||||.+|||.|+++.|||++||.+||.||+.|. +.|+|++||||+||+||||++
T Consensus        41 ~Pt~krF~kkvs~~~g~~~g~~~v~LD~R~lKTP~g~~f~v~s~~LA~~ia~Ewdsq~s~~i~~~~mplt~L~~taid~~  120 (283)
T KOG3015|consen   41 SPTSKRFYKKVSTLTGDAFGGQEVQLDGRTLKTPKGNPFKVRSEKLAIAIALEWDSQKSTSIRPFTMPLTSLVFTAIDNP  120 (283)
T ss_pred             CCcHHHHHhhhhheecccCCceEEecccccccCCCCCeeecccHHHHHHHHHHHhhcccccccccccHHHHHHHHHhhcc
Confidence            33469999999999877  999999999999999999999999999999999999999 899999999999999999998


Q ss_pred             CCCCHHHHHHHHHhhhCCCeEEEeecCcccCC
Q psy1002         103 NRLTKFDLVQNIINFLDTDTILYHANFFLRKG  134 (136)
Q Consensus       103 ~~~~r~~v~~~ll~Yl~TDtlcyra~~~~~~~  134 (136)
                      .+.+++.+++.|++|++|||||||++..++.|
T Consensus       121 ~~~~kd~i~~~llrfldtDTvlf~~pe~e~l~  152 (283)
T KOG3015|consen  121 SELNKDTISNQLLRFLDTDTVLFFSPESEDLG  152 (283)
T ss_pred             CcccHHHHHHHHHHHhccCeEEEecCChhhhh
Confidence            88899999999999999999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
2zd2_A	234	D202k Mutant Of P. Denitrificans Atp12p Length = 23		2e-12
2p4x_A	239	Crystal Structure Of Atp12 From Paracoccus Denitrif		2e-12
2r6i_A	284	Crystal Structure Of Atu1473 Protein, A Putative Ch		3e-07

>pdb|2ZD2|A Chain A, D202k Mutant Of P. Denitrificans Atp12p Length = 234

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 28  KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 4   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 63
Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNII-NFLDTDTILYHAN 128
            M LT   N+ I+      +FD V  ++ ++  TD + Y A+
Sbjct: 64  AMPLTRSANSAIE--KVAPQFDAVAAMLGDYGGTDLLSYRAD 103

>pdb|2P4X|A Chain A, Crystal Structure Of Atp12 From Paracoccus Denitrificans Length = 239

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 28  KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 8   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 67
Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNII-NFLDTDTILYHAN 128
            M LT   N+ I+      +FD V  ++ ++  TD + Y A+
Sbjct: 68  AMPLTRSANSAIE--KVAPQFDAVAAMLGDYGGTDLLSYRAD 107

>pdb|2R6I|A Chain A, Crystal Structure Of Atu1473 Protein, A Putative Chaperone From Agrobacterium Tumefaciens Length = 284

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 29  PKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           PKRFYK V + +   G + I LD + L+TP        S  LA  +  EWDAQ E +   
Sbjct: 51  PKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPV 110
Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
              ++   NT ID     T+  + ++I+ F  +D + Y A 
Sbjct: 111 VXPVSRHVNTAIDGIASDTQA-VFEDILRFSSSDLLCYRAG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2r31_A	239	ATP12 ATPase; chaperone F1 ATPase assembly ATP12P,	1e-30
2r6i_A	284	AGR_C_2717P, uncharacterized protein ATU1473; chap	2e-30
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-06

>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A Length = 239

 Score =  108 bits (272), Expect = 1e-30
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 28  KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 8   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 67

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHA 127
            M LT   N+ I+         +   + ++  TD + Y A
Sbjct: 68  AMPLTRSANSAIEKVAP-QFDAVAAMLGDYGGTDLLSYRA 106

>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1 Length = 284

 Score =  109 bits (273), Expect = 2e-30
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 28  KPKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQR 86
            PKRFYK V + +   G + I LD + L+TP        S  LA  +  EWDAQ E +  
Sbjct: 50  LPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNP 109

Query: 87  STMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
             M ++   NT ID     T+  + ++I+ F  +D + Y A 
Sbjct: 110 VVMPVSRHVNTAIDGIASDTQ-AVFEDILRFSSSDLLCYRAG 150

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 27/56 (48%)

Query: 30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQ 85
          K+  KK   L++      SL   KL   +       S P ALAI A       T++
Sbjct: 19 KQALKK---LQA------SL---KLYADD-------SAP-ALAIKA-------TME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
2r31_A	239	ATP12 ATPase; chaperone F1 ATPase assembly ATP12P,	100.0
2r6i_A	284	AGR_C_2717P, uncharacterized protein ATU1473; chap	100.0

>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A

Probab=100.00  E-value=1.1e-44  Score=293.96  Aligned_cols=104  Identities=33%  Similarity=0.487  Sum_probs=100.0

Q ss_pred             CCCCccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccchhhhhhhhhcCCCCCC
Q psy1002          27 EKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLT  106 (136)
Q Consensus        27 ~~~kRFyK~v~V~~~~gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MPLT~La~tAID~~~~~~  106 (136)
                      ..+|||||+|+|.+.+|||.|+||||+||||+|++|+|||++||++||+||++|++.|+|++||||+|||||||++.. +
T Consensus         7 ~~~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~L~vPs~~LA~aiA~EW~~Q~~~I~p~~MPlT~La~tAiD~~~~-~   85 (239)
T 2r31_A            7 WKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAP-Q   85 (239)
T ss_dssp             HHTBCCCSCEEEEEETTEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHHTCCSBCCGGGCHHHHHHHHHHHTTGG-G
T ss_pred             cccccceeeceEEecCCceEEEeCCCCCCCCCCCeeecCcHHHHHHHHHHHHHhhccCccCCCcHHHHHHHHHccCcc-c
Confidence            357999999999999999999999999999999999999999999999999999999999999999999999999974 8


Q ss_pred             HHHHHHHHHhhhCCCeEEEeecCcc
Q psy1002         107 KFDLVQNIINFLDTDTILYHANFFL  131 (136)
Q Consensus       107 r~~v~~~ll~Yl~TDtlcyra~~~~  131 (136)
                      |+.++++|++|++||+||||+++++
T Consensus        86 r~~v~~~ll~y~~tD~l~yra~~p~  110 (239)
T 2r31_A           86 FDAVAAMLGDYGGTDLLSYRADAPE  110 (239)
T ss_dssp             HHHHHHHHHHGGGSCGGGEECCCCH
T ss_pred             HHHHHHHHHHhcCCCeEEEecCCcH
Confidence            9999999999999999999998764

>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1

Probab=100.00  E-value=1.1e-43  Score=294.59  Aligned_cols=104  Identities=32%  Similarity=0.485  Sum_probs=100.0

Q ss_pred             CCCCccceeeeeEEeC-CcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccchhhhhhhhhcCCCCC
Q psy1002          27 EKPKRFYKKVGILESN-GDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRL  105 (136)
Q Consensus        27 ~~~kRFyK~v~V~~~~-gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MPLT~La~tAID~~~~~  105 (136)
                      ..+|||||+|+|.+.+ |||+|+||||+||||+|++|+|||++||.+||+||++|++.|+|++||||+|||||||++.+ 
T Consensus        49 ~~~KRFyK~v~V~~~~~gg~~V~LDgR~lKTP~k~~L~vPs~~LA~aIA~EW~aQ~e~I~p~~MPLT~La~tAID~~~~-  127 (284)
T 2r6i_A           49 PLPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPVVMPVSRHVNTAIDGIAS-  127 (284)
T ss_dssp             TSCBCCCSCEEEEECTTSCEEEEETTEECBCTTSCBCCBSSHHHHHHHHHHHHTCSSBCCGGGCHHHHHHHHHHHTTGG-
T ss_pred             hhcccceeeceeEEcCCCCeEEEeCCCcCCCCCCCeeecCcHHHHHHHHHHHHhhhccCccCCCcHHHHHHHHHccCcc-
Confidence            4679999999999998 99999999999999999999999999999999999999999999999999999999999976 


Q ss_pred             CHHHHHHHHHhhhCCCeEEEeecCcc
Q psy1002         106 TKFDLVQNIINFLDTDTILYHANFFL  131 (136)
Q Consensus       106 ~r~~v~~~ll~Yl~TDtlcyra~~~~  131 (136)
                      +|+.++++|++|++||+||||++.++
T Consensus       128 ~r~~v~~~ll~yl~tDtlcyra~~p~  153 (284)
T 2r6i_A          128 DTQAVFEDILRFSSSDLLCYRAGDPE  153 (284)
T ss_dssp             GHHHHHHHHHHHHHTCTTTEECCCCH
T ss_pred             hHHHHHHHHHHhcCCceEEEeCCCcH
Confidence            89999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d2r31a1	233	d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denit	4e-32
d2r6ia1	261	d.381.1.1 (A:1-261) Uncharacterized protein Atu147	6e-32

>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans [TaxId: 266]} Length = 233

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: ATP12 ATPase
species: Paracoccus denitrificans [TaxId: 266]

 Score =  111 bits (279), Expect = 4e-32
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 28  KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 3   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 62

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANF 129
            M LT   N+ I+         +   + ++  TD + Y A+ 
Sbjct: 63  AMPLTRSANSAIEKVAP-QFDAVAAMLGDYGGTDLLSYRADA 103

>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473 {Agrobacterium tumefaciens [TaxId: 358]} Length = 261

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: Uncharacterized protein Atu1473
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  111 bits (280), Expect = 6e-32
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 29  PKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           PKRFYK V + +   G + I LD + L+TP        S  LA  +  EWDAQ E +   
Sbjct: 30  PKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPV 89

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
            M ++   NT ID     T+  + ++I+ F  +D + Y A 
Sbjct: 90  VMPVSRHVNTAIDGIASDTQ-AVFEDILRFSSSDLLCYRAG 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d2r6ia1	261	Uncharacterized protein Atu1473 {Agrobacterium tum	100.0
d2r31a1	233	ATP12 ATPase {Paracoccus denitrificans [TaxId: 266	100.0

>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: Uncharacterized protein Atu1473
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.1e-42  Score=282.66  Aligned_cols=115  Identities=33%  Similarity=0.468  Sum_probs=105.0

Q ss_pred             chhhhhhhhccccCCCCCCccceeeeeEEe-CCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccc
Q psy1002          12 PRLINSIQSCKYSALEKPKRFYKKVGILES-NGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMH   90 (136)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~kRFyK~v~V~~~-~gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MP   90 (136)
                      |-.-.++++.++    ++|||||+|+|.+. +|||+|+||||+||||+|++|+|||++||++||.||++|++.|+|++||
T Consensus        17 ~~~~~~~~~~~~----l~KRFyk~v~v~~~~~gg~~V~LD~r~lkTP~~~~L~vps~~LA~aiA~EW~~q~~~i~p~~MP   92 (261)
T d2r6ia1          17 PILRAQIQMQKP----LPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPVVMP   92 (261)
T ss_dssp             HHHHHHHHHTTT----SCBCCCSCEEEEECTTSCEEEEETTEECBCTTSCBCCBSSHHHHHHHHHHHHTCSSBCCGGGCH
T ss_pred             hHHHHHHHhccc----ccCcccccceEEEecCCcEEEEECCCccCCCCCCeeccCcHHHHHHHHHHHHhCcccCCcccCc
Confidence            333445566666    78999999999985 7899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHHHhhhCCCeEEEeecCcc
Q psy1002          91 LTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANFFL  131 (136)
Q Consensus        91 LT~La~tAID~~~~~~r~~v~~~ll~Yl~TDtlcyra~~~~  131 (136)
                      ||+||++|||++.+ +|+.++++|++|++||+||||+++++
T Consensus        93 lt~L~~taiD~~~~-~r~~ii~~ll~yl~tDllcyr~~~p~  132 (261)
T d2r6ia1          93 VSRHVNTAIDGIAS-DTQAVFEDILRFSSSDLLCYRAGDPE  132 (261)
T ss_dssp             HHHHHHHHHHTTGG-GHHHHHHHHHHHHHTCTTTEECCCCH
T ss_pred             HHHHHHHHhhccch-hHHHHHHHHHHhccccEEEEecCCch
Confidence            99999999999865 89999999999999999999998764

>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: ATP12 ATPase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=3.2e-42  Score=275.04  Aligned_cols=102  Identities=32%  Similarity=0.500  Sum_probs=99.2

Q ss_pred             CCccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccchhhhhhhhhcCCCCCCHH
Q psy1002          29 PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKF  108 (136)
Q Consensus        29 ~kRFyK~v~V~~~~gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MPLT~La~tAID~~~~~~r~  108 (136)
                      +|||||+|+|.+.+|||.|+||||+||||+|++|.|||+.||++||.||++|++.|+|++||||+||++|||++.+ +|+
T Consensus         4 ~KRFyk~v~v~~~~~~~~V~LD~r~lkTP~~~~L~vps~~LA~~ia~EW~~q~~~i~p~~mplt~L~~~aiD~~~~-~r~   82 (233)
T d2r31a1           4 ARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAP-QFD   82 (233)
T ss_dssp             TBCCCSCEEEEEETTEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHHTCCSBCCGGGCHHHHHHHHHHHTTGG-GHH
T ss_pred             cccccccceEEEeCCcEEEEECCccccCCCCCeeecCcHHHHHHHHHHHHhhhcccCcccChHHHHHHHHhhccch-hHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999975 899


Q ss_pred             HHHHHHHhhhCCCeEEEeecCcc
Q psy1002         109 DLVQNIINFLDTDTILYHANFFL  131 (136)
Q Consensus       109 ~v~~~ll~Yl~TDtlcyra~~~~  131 (136)
                      .+++.|++|++||+||||+++++
T Consensus        83 ~~~~~i~~y~~tD~l~yra~~p~  105 (233)
T d2r31a1          83 AVAAMLGDYGGTDLLSYRADAPE  105 (233)
T ss_dssp             HHHHHHHHGGGSCGGGEECCCCH
T ss_pred             HHHHHHHHHccCCeEEecCCCCh
Confidence            99999999999999999998875