Psyllid ID: psy10030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
Protein Sequence
NCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHccccccccccEEEEEcccccEEEccccccccccccccccccccccHHHHHHHccHHHHHHHcccEEEEEEEEcccccccccccccHHHHHcccccccEEEEcccccccccEEEEEccEEEEEEEcccccccccccccccccccccccccccEEEEHHHHHHHHHHHHccccHHcccccccccccccccccccccEEEEEEEEEccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEcccccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHccccEEEEEcHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHccccccccccccHHHccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHcccccccHccEEEEEccccccEccccEEEEcccccEEEccccccHHHHHHHHccHHHHHHHcccEEEEEEEcccEEEEEcccHEHHHHHHccccHHHHHEEcccccccEEEEEEEccccEEEEEEcccHHHHHHHccccccEEEEHHHHHHHHHcHHHHHHHHcHHccccccEEEEEcccEcccccEEccccccccEEEEEEEEcccccccEEEEEEcHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEcccccccEEEEcccEccccccHHHHHcccEEcccEEEc
Coil and Loop (DISEMBL)
nclsgvntvdastlGKYRELGLKLISRGDVAVIVLAggqgtrlgadypnrieSIKIQVYIGHGyqelsgvqlsevqvfppnclsgvntvdastLGKYRELGLKLISRGDVAVIVLAggqgtrlgadypkgmyniglpsgkSLFQIQAEKIDKLIEIAKEkfgsgclpwfimtseltdrptreyferngyfgldpahviffkqrsmpcfslsgeilletrdrvarspdghgglyhalgatgildtmhtrgiKHIHVYCVDnilvkvgdptflgycveqgahcgvkvvekitpgeslgvlcnvdgkhKIVEyselgncsvfetqdqtgRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMarkkipcldeqgisqrpnkpngikLEKFLFDafplcenlvawevtrdefsplknspldsasdnpvtCCQAVHALHARWIETAggvvvadetgntvceiaprvsyegegleervkgkvlqtpllle
Flexible Loop (DISEMBL)
nclsgvntvdastlgKYRELGLKLISRGDVAVIVLAGgqgtrlgadypnRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSgvntvdastlGKYRELGLKLISRGDVAVIVLAGGqgtrlgadyPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKekfgsgclpwfIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKipcldeqgisqrpnkPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKnspldsasdnPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPrvsyegegleervkgkvlqtpllle
Low Complexity Region (SEG)
NCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE
Disordered region (IsUnstruct)
*******TVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDE***********GIKLEKFLFDAFPLCENLVAWEVTRDEF**************PVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGE******************
Disordered Region (DISOPRED)
***********************LISRGDVAVIVLAGGQ*************SIKIQVYIGH*******************************LGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE
Disordered Region (DISEMBL)
NCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE
Disordered Region (DISPRO)
*********DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS*******QV*P*N*LSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	484	2.2.26 [Sep-21-2011]
Q16222	522	UDP-N-acetylhexosamine py	yes	N/A	0.832	0.772	0.461	1e-109
Q91YN5	522	UDP-N-acetylhexosamine py	yes	N/A	0.832	0.772	0.456	1e-108
Q7ZWD4	505	UDP-N-acetylhexosamine py	no	N/A	0.840	0.805	0.472	1e-108
Q3TW96	507	UDP-N-acetylhexosamine py	no	N/A	0.845	0.806	0.465	1e-107
Q28CH3	511	UDP-N-acetylhexosamine py	no	N/A	0.838	0.794	0.469	1e-106
Q3KQV9	507	UDP-N-acetylhexosamine py	no	N/A	0.842	0.804	0.461	1e-106
Q54GN5	487	Probable UDP-N-acetylgluc	yes	N/A	0.811	0.806	0.437	3e-92
O74933	486	UDP-N-acetylglucosamine p	N/A	N/A	0.816	0.812	0.445	2e-87
O64765	502	Probable UDP-N-acetylgluc	yes	N/A	0.828	0.798	0.395	1e-83
P43123	477	UDP-N-acetylglucosamine p	yes	N/A	0.811	0.823	0.416	2e-82

>sp|Q16222|UAP1_HUMAN UDP-N-acetylhexosamine pyrophosphorylase OS=Homo sapiens GN=UAP1 PE=1 SV=3

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/440 (46%), Positives = 282/440 (64%), Gaps = 37/440 (8%)

Query: 80  PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
           P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct: 73  PREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSR 132

Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
           K+LFQIQAE+I KL ++A++ +G+ C+ PW+IMTS  T   T+E+F ++ YFGL   +VI
Sbjct: 133 KTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVI 192

Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252

Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311

Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
            + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct: 312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPD 371

Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431

Query: 437 WIETAGGVVVADETGNTV--------------------------------CEIAPRVSYE 464
           W+  AGG  + DE G+ +                                CEI+P +SY 
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRSATNGKSETITADVNHNLKDANDVPIQCEISPLISYA 490

Query: 465 GEGLEERVKGKVLQTPLLLE 484
           GEGLE  V  K    PL+++
Sbjct: 491 GEGLESYVADKEFHAPLIID 510

Converts UDP and GlcNAc-1-P into UDP-GlcNAc, and UDP and GalNAc-1-P into UDP-GalNAc. Isoform AGX1 has 2 to 3 times higher activity towards GalNAc-1-P, while isoform AGX2 has 8 times more activity towards GlcNAc-1-P.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 3

>sp|Q91YN5|UAP1_MOUSE UDP-N-acetylhexosamine pyrophosphorylase OS=Mus musculus GN=Uap1 PE=1 SV=1

 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/440 (45%), Positives = 281/440 (63%), Gaps = 37/440 (8%)

Query: 80  PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
           P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct: 73  PRQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSH 132

Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
           K+LFQIQAE+I KL ++A++  G+ C +PW+IMTS  T   T+E+F ++ +FGL   +V+
Sbjct: 133 KTLFQIQAERILKLQQLAEKHHGNKCTIPWYIMTSGRTMESTKEFFTKHKFFGLKKENVV 192

Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGICSIHVYCV 252

Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311

Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
            + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct: 312 AQRRSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGYFIKPD 371

Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431

Query: 437 WIETAGGVVVADETGNTV--------------------------------CEIAPRVSYE 464
           W+  AGG  + DE G+ +                                CEI+P +SY 
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRSATNGKSEAITADVNHNLKDANDVPIQCEISPLISYA 490

Query: 465 GEGLEERVKGKVLQTPLLLE 484
           GEGLE  V  K    PL+++
Sbjct: 491 GEGLEGYVADKEFHAPLIID 510

Converts UDP and GlcNAc-1-P into UDP-GlcNAc, and UDP and GalNAc-1-P into UDP-GalNAc. Isoform AGX1 has 2 to 3 times higher activity towards GalNAc-1-P, while isoform AGX2 has 8 times more activity towards GlcNAc-1-P.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 3

>sp|Q7ZWD4|UAP1L_DANRE UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Danio rerio GN=uap1l1 PE=2 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/432 (47%), Positives = 282/432 (65%), Gaps = 25/432 (5%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           + +Q  PP  +  V   D  TL K+   GL  IS+  VAV++LAGGQGTRLG  YPKGMY
Sbjct: 68  ARMQPVPPEFIGSVRKSDRETLQKWENEGLLQISQDRVAVLLLAGGQGTRLGVSYPKGMY 127

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFG 191
           N+GLPSGK+L+QIQAE+I K+ E+A  + G  C +PW+IMTSE T  PT ++F+ N YFG
Sbjct: 128 NVGLPSGKTLYQIQAERIQKVQELANVRHGCRCTVPWYIMTSEFTLGPTEKFFKDNKYFG 187

Query: 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK 251
           L P++V+ F+QR +P     G+I+LE ++++A +PDG+GGLY +L    IL  M  R ++
Sbjct: 188 LCPSNVVMFEQRMIPAVGFDGKIILEKKNKIAMAPDGNGGLYRSLVDNKILADMERRNVE 247

Query: 252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS 311
            +HVYCVDNILVK+ DP F+G+CV  GA CG KVVEK  P E +GV+C VDG ++++EYS
Sbjct: 248 FLHVYCVDNILVKMADPVFIGFCVTNGADCGAKVVEKAYPAEPVGVVCRVDGVYQVIEYS 307

Query: 312 ELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV-KEDAALKFHMARKKIPCLDEQ 370
           E+      E +   G L F+ G+ICNH+F+   L+ +  K ++ LK H+A KK+P +D +
Sbjct: 308 EI-QPETAELRGSGGELVFSAGNICNHFFTRSFLRDVAEKFESKLKQHVAIKKVPFVDGE 366

Query: 371 GISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKN---SPLDSASDNPVTC 426
           G   +P KPNGIK+EKF+FD F   +  VA+EV R +EFSPLKN   +PLD+    P T 
Sbjct: 367 GNLVKPTKPNGIKMEKFVFDVFQFSKKFVAFEVLREEEFSPLKNADGAPLDT----PTTA 422

Query: 427 CQAVHALHARWIETAGGVVVAD--------------ETGNTVCEIAPRVSYEGEGLEERV 472
            +++ A H RWI  AGG  + +              E    VCEI+P VSY GEGLE  +
Sbjct: 423 RRSLLAQHYRWILAAGGSFLDEQNKPFTPKHSTAQIEDPPAVCEISPLVSYFGEGLEMLL 482

Query: 473 KGKVLQTPLLLE 484
             K L++P +L+
Sbjct: 483 NQKNLKSPFILD 494

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|Q3TW96|UAP1L_MOUSE UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Mus musculus GN=Uap1l1 PE=2 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/430 (46%), Positives = 287/430 (66%), Gaps = 21/430 (4%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           + +Q  PP  +      D  T  ++ E G + IS   VAV++LAGGQGTRLG  YPKGMY
Sbjct: 69  ARLQPLPPERVGSAIRCDQETRLRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMY 128

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFG 191
            +GLPS K+L+Q+QAE+I ++ ++A ++ G+ C +PW+IMTSE T  PT ++F+ + +F 
Sbjct: 129 QVGLPSQKTLYQLQAERIRRVQQLADQRQGTHCTVPWYIMTSEFTLGPTIKFFKEHDFFH 188

Query: 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK 251
           LDP +V+ F+QR +P  +  G+ +LE +D+VA +PDG+GGLY AL    IL+ M  RG++
Sbjct: 189 LDPTNVVLFEQRMLPAVTFEGKAILERKDKVAMAPDGNGGLYCALADHQILEDMKQRGVE 248

Query: 252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS 311
            +HVYCVDNILV++ DP F+G+CV QGA CG KVVEK  P E +GV+C VDG  ++VEYS
Sbjct: 249 FVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYS 308

Query: 312 ELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQ 370
           E+ +  +       G L +N G+ICNH+F+   L  + +E +  L+ H+A KK+P +DE+
Sbjct: 309 EI-SPEIAGQLGADGGLLYNAGNICNHFFTRGFLDVVTREFEPLLRLHVAMKKVPYVDEE 367

Query: 371 GISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSAS-DNPVTCCQ 428
           G   +P +PNGIK+EKF+FD F   +N VA+EV R +EFSPLKN   D+A  DNP TC +
Sbjct: 368 GNLVKPLRPNGIKMEKFVFDVFQFAKNFVAFEVCREEEFSPLKND--DTADRDNPSTCRR 425

Query: 429 AVHALHARWIETAG-------GVVVADETG-------NTVCEIAPRVSYEGEGLEERVKG 474
           A+ A H RW   AG       GV + +++G         +CEI+P VSY GEGLE  ++G
Sbjct: 426 ALLAQHYRWALQAGARFLDVHGVQLTEQSGMLPNGDPPAICEISPLVSYSGEGLEMYLQG 485

Query: 475 KVLQTPLLLE 484
           + LQ+P +L+
Sbjct: 486 RQLQSPFILD 495

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|Q28CH3|UAP1L_XENTR UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Xenopus tropicalis GN=uap1l1 PE=2 SV=1

 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/430 (46%), Positives = 279/430 (64%), Gaps = 24/430 (5%)

Query: 75  VQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNI 134
           +Q  PP  L  V       L ++   G   I++  VAV++LAGGQGTRLG  YPKGMY++
Sbjct: 77  MQPVPPEFLGSVRHSGTGELERWEREGFHQIAQNKVAVLLLAGGQGTRLGVTYPKGMYSV 136

Query: 135 GLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLD 193
           GLPS K+L+QIQAE+I +L ++A E+ G  C +PW+IMTSE T  PTR++FE + YFGL+
Sbjct: 137 GLPSAKTLYQIQAERIRRLQQLASERHGETCTVPWYIMTSEFTLGPTRKFFEDHAYFGLE 196

Query: 194 PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
            + V+ F+QR +P     G  +LE + ++A +PDG+GGLY AL    IL+ M  RGI+++
Sbjct: 197 RSDVVMFEQRMLPAVGFDGAAILEDKAKLAMAPDGNGGLYRALSDNRILEDMEGRGIQYV 256

Query: 254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
           HVYCVDNILVK+ DP F+G+CV +GA CG KVVEK  P E +GV+C VDG +++VEYSE+
Sbjct: 257 HVYCVDNILVKMADPVFIGFCVSKGADCGAKVVEKGYPAEPVGVVCRVDGVYQVVEYSEI 316

Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGI 372
              +  E ++  G L F  G+ICNH+F++  L+ ++   +  L +H+A KK+P +D +G 
Sbjct: 317 SPETA-EKRNPNGALTFTAGNICNHFFTVPFLRAVIGSLEPRLNYHVAIKKVPYVDNEGN 375

Query: 373 SQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSAS-DNPVTCCQAV 430
             +P  PNGIK+EKF+FD F   +N VA+EV R +EFSPLKN+  D+A  D P T  +A+
Sbjct: 376 LVKPTSPNGIKMEKFVFDVFQFAKNFVAFEVLREEEFSPLKNA--DTADKDTPTTARRAL 433

Query: 431 HALHARWIETAGGVVVADETGN---------------TVCEIAPRVSYEGEGLEERVKGK 475
              H RW   AG   + DETG+                VCEI+P VSY GEGLE  +K K
Sbjct: 434 LWQHYRWARRAGTHFL-DETGSPIRDSHSISGEGDPPAVCEISPLVSYFGEGLESYMKDK 492

Query: 476 -VLQTPLLLE 484
            V   P +LE
Sbjct: 493 DVSSFPFVLE 502

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|Q3KQV9|UAP1L_HUMAN UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Homo sapiens GN=UAP1L1 PE=1 SV=2

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/431 (46%), Positives = 283/431 (65%), Gaps = 23/431 (5%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           + ++  PP  +   +  D  T  ++ E G + IS   VAV++LAGGQGTRLG  YPKGMY
Sbjct: 69  ARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMY 128

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFG 191
            +GLPS K+L+Q+QAE+I ++ ++A E+ G+ C +PW++MTSE T  PT E+F  + +F 
Sbjct: 129 RVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCTVPWYVMTSEFTLGPTAEFFREHNFFH 188

Query: 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK 251
           LDPA+V+ F+QR +P  +  G+++LE +D+VA +PDG+GGLY AL    IL+ M  RG++
Sbjct: 189 LDPANVVMFEQRLLPAVTFDGKVILERKDKVAMAPDGNGGLYCALEDHKILEDMERRGVE 248

Query: 252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS 311
            +HVYCVDNILV++ DP F+G+CV QGA CG KVVEK  P E +GV+C VDG  ++VEYS
Sbjct: 249 FVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYS 308

Query: 312 ELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQ 370
           E+   +  + +   G L +N G+ICNH+F+   L+ + +E +  LK H+A KK+P +DE+
Sbjct: 309 EISPETA-QLRASDGSLLYNAGNICNHFFTRGFLKAVTREFEPLLKPHVAVKKVPYVDEE 367

Query: 371 GISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNS-PLDSASDNPVTCCQ 428
           G   +P KPNGIK+EKF+FD F   +N  A EV R +EFSPLKN+ P D   D+P T  Q
Sbjct: 368 GNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPAD--RDSPRTARQ 425

Query: 429 AVHALHARWIETAGGVVVADETGN---------------TVCEIAPRVSYEGEGLEERVK 473
           A+   H RW   AG   + D  G                 +CEI+P VSY GEGLE  ++
Sbjct: 426 ALLTQHYRWALRAGARFL-DAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVYLQ 484

Query: 474 GKVLQTPLLLE 484
           G+  Q+PL+L+
Sbjct: 485 GREFQSPLILD 495

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|Q54GN5|UAP1_DICDI Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Dictyostelium discoideum GN=uap1 PE=3 SV=1

 Score =  339 bits (870), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/407 (43%), Positives = 255/407 (62%), Gaps = 14/407 (3%)

Query: 86  VNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQI 145
           +N +      K+ ++G +LIS+G+VAV++LAGGQ TRLG  +PKG Y++GLPS KSLFQ+
Sbjct: 76  LNKIKEQDKKKWEDIGYELISKGEVAVLLLAGGQATRLGTTFPKGFYDVGLPSKKSLFQL 135

Query: 146 QAEKIDKLIEIAKEKFG------SGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIF 199
           QAE+I +L ++  E++       S  + W+IMTSE T   T ++FE   YFGL  +   F
Sbjct: 136 QAERIYRLQQLVSERYNGSYDQDSKPIQWYIMTSEATHSETIKFFENKNYFGLKKSAFFF 195

Query: 200 FKQRSMPCFS-LSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           F Q  +PC +   G+I+ E+  +++ SP+G+GGL+ AL  +G +D M  +GIK++  YCV
Sbjct: 196 FSQAMIPCITPEDGKIISESGSKLSLSPNGNGGLFKALSTSGAIDDMRKKGIKYVTQYCV 255

Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLC-NVDGKHKIVEYSELGNCS 317
           DNIL+ + DP F+GY  +Q A CG KVV K  P E +GV+  N DGK  ++EYSE+   S
Sbjct: 256 DNILINMADPVFVGYMHDQSADCGAKVVSKSDPKEPVGVMALNGDGKPFVLEYSEIDEQS 315

Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKED-AALKFHMARKKIPCLDE-QGISQR 375
            F+ +DQ G+L FN   IC + FS + L R+ K     LK+H+A KKIP      G  Q 
Sbjct: 316 KFK-KDQNGQLVFNYAHICINAFSFDFLDRIAKNHLDHLKYHVAFKKIPSAHPISGERQS 374

Query: 376 PNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALH 434
           P+ PNG KLEKF+FD FP  + +V  E+ R  EFSPLKN    +  D+P TC + +  LH
Sbjct: 375 PSSPNGWKLEKFIFDVFPFSKKMVCLEIERSKEFSPLKNCGGMNLPDSPETCLRDISNLH 434

Query: 435 ARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPL 481
             +IE +GG +  D + +T+CE++P VS  GE L+  V  K    P+
Sbjct: 435 KSFIENSGGKI--DSSNSTICEVSPLVSLNGENLKNFVNDKTFILPI 479

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 3

>sp|O74933|UAP1_CANAX UDP-N-acetylglucosamine pyrophosphorylase OS=Candida albicans GN=UAP1 PE=1 SV=1

 Score =  323 bits (828), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/424 (44%), Positives = 256/424 (60%), Gaps = 29/424 (6%)

Query: 69  GVQLSEVQVFPPNCLSGVNTVDASTLG-------KYRELGLKLISRGDVAVIVLAGGQGT 121
            +Q S+      N     N   ASTL         + ELGLK I  G+VAV+++AGGQGT
Sbjct: 56  AIQFSQTNSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGT 115

Query: 122 RLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP---WFIMTSELTDR 178
           RLG+  PKG +NI LPS KSLFQIQAEKI K+ ++A++   S   P   W+IMTS  T  
Sbjct: 116 RLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRN 175

Query: 179 PTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSG-EILLETRDRVARSPDGHGGLYHALG 237
            T  +F  N YFGL+   VIFF Q ++PCF+L G +ILLE+++ + +SPDG+GGLY AL 
Sbjct: 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLESKNSICQSPDGNGGLYKALK 235

Query: 238 ATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLG- 296
             GILD ++++GIKHIH+YCVDN LVKV DP F+G+ + +      KVV K    ES+G 
Sbjct: 236 DNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGL 295

Query: 297 -VLCNVDGKHKIVEYSELGN--CSVFETQDQTGRLKFNLGSICNHYFSLECLQRM----V 349
            VL   + K  ++EYSE+     +  + QD + +L     +I NHY+S+E L +M    +
Sbjct: 296 IVLDQDNQKPCVIEYSEISQELANKKDPQD-SSKLFLRAANIVNHYYSVEFLNKMIPKWI 354

Query: 350 KEDAALKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFPLCE--NLVAWEVTR- 405
                L FH+A+KKIP L+ E G   +P +PNGIKLE+F+FD FP  E       EV R 
Sbjct: 355 SSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRL 414

Query: 406 DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEG 465
           DEFSPLKN+   + +D P TC        ++W+   GGV+  D  G  + E+  + SY G
Sbjct: 415 DEFSPLKNAD-GAKNDTPTTCRNHYLERSSKWVIQNGGVI--DNQG--LVEVDSKTSYGG 469

Query: 466 EGLE 469
           EGLE
Sbjct: 470 EGLE 473

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 3

>sp|O64765|UAP1_ARATH Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Arabidopsis thaliana GN=At2g35020 PE=2 SV=1

 Score =  310 bits (795), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/425 (39%), Positives = 254/425 (59%), Gaps = 24/425 (5%)

Query: 69  GVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 128
           G+ ++ ++  P NC+S V         K+ ++GLK I  G + V++L+GGQGTRLG+  P
Sbjct: 84  GLPVAAIEPVPENCVSTVEERTKEDREKWWKMGLKAIYEGKLGVVLLSGGQGTRLGSSDP 143

Query: 129 KGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSG------CLPWFIMTSELTDRPTRE 182
           KG YNIGLPSGKSLFQIQAE+I  +  +A +            + W+IMTS  T  PT++
Sbjct: 144 KGCYNIGLPSGKSLFQIQAERILCVQRLASQAMSEASPTRPVTIQWYIMTSPFTHEPTQK 203

Query: 183 YFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGIL 242
           +F+ + YFGL+P  V FF+Q ++PC S  G+ ++ET   ++++PDG+GG+Y AL ++ +L
Sbjct: 204 FFKSHKYFGLEPDQVTFFQQGTLPCISKDGKFIMETPFSLSKAPDGNGGVYTALKSSRLL 263

Query: 243 DTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN-- 300
           + M +RGIK++  Y VDN+LV+V DPTFLGY +++ A    KVV K  P E +GV     
Sbjct: 264 EDMASRGIKYVDCYGVDNVLVRVADPTFLGYFIDKSAASAAKVVRKAYPQEKVGVFVRRG 323

Query: 301 VDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM---VKEDAALKF 357
             G   +VEY+EL       T  QTGRL++   ++C H F+L+ L ++   +++D+   +
Sbjct: 324 KGGPLTVVEYTELDQSMASATNQQTGRLQYCWSNVCLHMFTLDFLNQVANGLEKDSV--Y 381

Query: 358 HMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPL 416
           H+A KKIP ++   +        G+KLE+F+FD FP   +   +EV R +EF+P+KN+  
Sbjct: 382 HLAEKKIPSINGDIV--------GLKLEQFIFDCFPYAPSTALFEVLREEEFAPVKNAN- 432

Query: 417 DSASDNPVTCCQAVHALHARWIETAGGVVVAD-ETGNTVCEIAPRVSYEGEGLEERVKGK 475
            S  D P +    V  LH RW+  AGG +        T  E++P  SY GE LE   +G+
Sbjct: 433 GSNYDTPESARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGR 492

Query: 476 VLQTP 480
               P
Sbjct: 493 TFHAP 497

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 3

>sp|P43123|UAP1_YEAST UDP-N-acetylglucosamine pyrophosphorylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QRI1 PE=1 SV=1

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 250/411 (60%), Gaps = 18/411 (4%)

Query: 74  EVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYN 133
           E+   PP     +   ++    +Y  LGL+ I +G+VAVI++AGGQGTRLG+  PKG Y+
Sbjct: 69  EISPLPPTSYESL-IGNSKKENEYWRLGLEAIGKGEVAVILMAGGQGTRLGSSQPKGCYD 127

Query: 134 IGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLD 193
           IGLPS KSLFQIQAEK+ +L ++ K+K     +PW+IMTS  T   T  YF+ + YFGL+
Sbjct: 128 IGLPSKKSLFQIQAEKLIRLQDMVKDK--KVEIPWYIMTSGPTRAATEAYFQEHNYFGLN 185

Query: 194 PAHVIFFKQRSMPCFSLSGE-ILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKH 252
              + FF Q ++P F L+G+  L++    +++SPDG+GGLY A+    + +    RGIKH
Sbjct: 186 KEQITFFNQGTLPAFDLTGKHFLMKDPVNLSQSPDGNGGLYRAIKENKLNEDFDRRGIKH 245

Query: 253 IHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSE 312
           +++YCVDN+L K+ DP F+G+ ++ G     K V K    ES+G++   + K  ++EYSE
Sbjct: 246 VYMYCVDNVLSKIADPVFIGFAIKHGFELATKAVRKRDAHESVGLIATKNEKPCVIEYSE 305

Query: 313 LGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKED-AALKFHMARKKIPCLDE-Q 370
           + N  + E +D+ G LK   G+I NHY+ ++ L+R + +    + +H+A+KKIP  D   
Sbjct: 306 ISN-ELAEAKDKDGLLKLRAGNIVNHYYLVDLLKRDLDQWCENMPYHIAKKKIPAYDSVT 364

Query: 371 GISQRPNKPNGIKLEKFLFDAF---PLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTC 426
           G   +P +PNGIKLE+F+FD F   PL       EV R  EFSPLKN P  S +DNP T 
Sbjct: 365 GKYTKPTEPNGIKLEQFIFDVFDTVPL-NKFGCLEVDRCKEFSPLKNGP-GSKNDNPETS 422

Query: 427 CQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVL 477
             A   L   W+E AG +V        + E++ ++SY GE L +  KGKV 
Sbjct: 423 RLAYLKLGTSWLEDAGAIV----KDGVLVEVSSKLSYAGENLSQ-FKGKVF 468

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
348504396	506	PREDICTED: UDP-N-acetylhexosamine pyroph	0.863	0.826	0.467	1e-113
391340906	524	PREDICTED: UDP-N-acetylhexosamine pyroph	0.828	0.765	0.483	1e-113
334312009	505	PREDICTED: UDP-N-acetylhexosamine pyroph	0.845	0.809	0.490	1e-113
391326909	533	PREDICTED: UDP-N-acetylhexosamine pyroph	0.828	0.752	0.481	1e-113
193632108	490	PREDICTED: UDP-N-acetylhexosamine pyroph	0.830	0.820	0.486	1e-112
321454588	525	hypothetical protein DAPPUDRAFT_130439 [	0.842	0.777	0.459	1e-112
443696999	507	hypothetical protein CAPTEDRAFT_160367 [	0.847	0.808	0.477	1e-111
289740265	481	UDP-N-acetylglucosamine pyrophosphorylas	0.828	0.833	0.518	1e-111
332374866	492	unknown [Dendroctonus ponderosae]	0.836	0.823	0.492	1e-110
291397534	505	PREDICTED: UDP-N-acetylglucosamine pyrop	0.832	0.798	0.477	1e-110

>gi|348504396|ref|XP_003439747.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like [Oreochromis niloticus]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/460 (46%), Positives = 292/460 (63%), Gaps = 42/460 (9%)

Query: 65  QELSGVQLSEVQVFPPNCLSGVN----------------------TVDASTLGKYRELGL 102
           QEL G+   E+  F  N +   N                      T D  ++  +   GL
Sbjct: 37  QELEGMDFQEINGFFKNAMQTSNSSKQGKMDCRMEPVPREVLGSVTRDRESVKDWELTGL 96

Query: 103 KLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFG 162
           + IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS K+LFQIQAE+I KL ++A++   
Sbjct: 97  QCISKNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSHKTLFQIQAERILKLQQLAEQTHK 156

Query: 163 SGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDR 221
           + C +PW+IMTS  T   T+++F ++ YFGLD   V+FF+Q  +P    + +I+LE++ +
Sbjct: 157 TKCCIPWYIMTSGRTMESTKDFFSKHNYFGLDKNSVVFFQQGMLPAMDYNSKIILESKGK 216

Query: 222 VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
           ++ +PDG+GGLY ALG  GILD M  RGI+ IHVYCVDNILVKV DP F+G+CV++GA C
Sbjct: 217 LSMAPDGNGGLYRALGNQGILDDMERRGIESIHVYCVDNILVKVADPAFVGFCVQKGADC 276

Query: 282 GVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFS 341
           G KVVEK  P E++GV+C VDG++++VEYSE+   +  E +D  GRL FN G++ NH+FS
Sbjct: 277 GAKVVEKTNPTEAVGVVCRVDGRYQVVEYSEI-TLATAEKRDADGRLMFNAGNVANHFFS 335

Query: 342 LECLQRMV-KEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVA 400
              L+ +V K +  L+ H+A+KKIP +D QG   +P KPNGIK+EKF+FD F   +  V 
Sbjct: 336 FSFLRDIVQKYEPQLQHHVAQKKIPYVDAQGQLIKPEKPNGIKMEKFVFDIFQFAKQFVV 395

Query: 401 WEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTV----- 454
           +EV R DEFSPLKN+      D P T   A+ +LH RW+  AGG  + DE G  V     
Sbjct: 396 YEVLREDEFSPLKNADTQDGKDTPTTARHALMSLHHRWVLNAGGHFI-DENGRRVPAIPS 454

Query: 455 ----------CEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
                     CEI+P VSY GEGLEE VKGK  Q  L ++
Sbjct: 455 LKDGTDLPIKCEISPLVSYGGEGLEELVKGKEFQPTLTID 494

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391340906|ref|XP_003744774.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like [Metaseiulus occidentalis]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/428 (48%), Positives = 284/428 (66%), Gaps = 27/428 (6%)

Query: 79  PPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPS 138
           P      +       L  YR+ GL+ ISRG+VA ++LAGGQGTRLG  YPKGMY++GLPS
Sbjct: 97  PAEKFGSIARASKDELAAYRKAGLEAISRGEVAALLLAGGQGTRLGVPYPKGMYDVGLPS 156

Query: 139 GKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHV 197
           GK+L+ +QAE++ +L E+++ + G  G +PW+IMTSE T  PT EYFE+NG+FGL+  ++
Sbjct: 157 GKTLYNLQAERLIRLEELSERQTGKRGSIPWYIMTSEHTKEPTIEYFEKNGFFGLEGDNL 216

Query: 198 IFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYC 257
           + F+Q  MP F+  G+I+LE + R+A SPDG+GGLY+ L    IL+ M  RGIK IHVYC
Sbjct: 217 VVFEQNMMPSFTFDGKIILEKKHRLALSPDGNGGLYNVLYKRAILEDMKKRGIKFIHVYC 276

Query: 258 VDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCS 317
           VDNILVK+ DPTF+G+C+ +GA C  KVV+K TP E++GV+C V+G++++VEYSE+ +  
Sbjct: 277 VDNILVKIADPTFIGFCMSKGADCAAKVVKKATPTEAVGVVCRVNGRYQVVEYSEI-SAE 335

Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPN 377
             + ++  G L F+ G+ICNH+F+ + L R V    ALK+H+A+KKIP L+ +G   +P 
Sbjct: 336 TAQKRNSDGSLTFDAGNICNHFFTFDFLTR-VSGKKALKYHIAKKKIPYLNNEGQVTKPE 394

Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIKLE F+FD F   +N   WEV R DEFSPLKN+   +  D P TC   ++ LH R
Sbjct: 395 KPNGIKLEMFVFDVFEYSDNFAVWEVLREDEFSPLKNAD-GAEKDTPTTCRHHLYDLHHR 453

Query: 437 WIETAGGVVVADETGN---------------------TVCEIAPRVSYEGEGLEERVKGK 475
           +I  AGG  + DE G                       VCEI+P  SY+GE LE+ VKGK
Sbjct: 454 YIVNAGGTFI-DENGAPIALIPSSNRAVKSEKEVHEPIVCEISPLRSYDGELLEDLVKGK 512

Query: 476 VLQTPLLL 483
             + PL L
Sbjct: 513 QFRAPLHL 520

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334312009|ref|XP_003339694.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 [Monodelphis domestica]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/430 (49%), Positives = 297/430 (69%), Gaps = 21/430 (4%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           S ++   P  L  V   D  TL ++ E G   I++  VAV++LAGGQGTRLG  YPKGMY
Sbjct: 69  SRMKPVQPEFLGSVRKSDPQTLKRWEEEGFHQIAQNKVAVLLLAGGQGTRLGVTYPKGMY 128

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFG 191
            +GLPSGK+L+++QAE+I ++ ++A ++  + C +PW+IMTSE T +PT E+F+ N +F 
Sbjct: 129 QVGLPSGKTLYELQAERIRRVEQLAGQRHNTSCTVPWYIMTSEFTLKPTVEFFKENNFFQ 188

Query: 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK 251
           LDPA+VI F+QR +P  + +G+ +LE +D+VA +PDG+GGLY AL   GIL  M  RG++
Sbjct: 189 LDPANVIMFEQRMLPAVNFNGQAILERKDKVAMAPDGNGGLYRALVDNGILGDMERRGVQ 248

Query: 252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS 311
           ++HVYCVDNILVK+ DP F+G+CV +GA CG KVVEK  P E +GV+C VDG +++VEYS
Sbjct: 249 YVHVYCVDNILVKMADPVFIGFCVLKGADCGAKVVEKAYPTEPVGVVCQVDGIYQVVEYS 308

Query: 312 ELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQ 370
           E+G  +V + QD++G L FN G+ICNH+F+   LQ + +E +  LK H+A KK+P +DE 
Sbjct: 309 EVGLETV-QRQDESGNLVFNAGNICNHFFTRSFLQTVTREFEPLLKSHVAIKKVPFVDED 367

Query: 371 GISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSAS-DNPVTCCQ 428
           G   +P KPNGIK+EKF+FD F   +N VA+EV R +EFSPLKN+  D+ + D+P T  Q
Sbjct: 368 GNLVKPLKPNGIKMEKFVFDVFQFSKNFVAFEVLREEEFSPLKNA--DTVNKDSPTTARQ 425

Query: 429 AVHALHARWIETAG-------GVVVADETGNTV-------CEIAPRVSYEGEGLEERVKG 474
           A+ A H RW   AG       GV + +++  TV       CEI+P VSY GEGLE  +K 
Sbjct: 426 ALLAQHYRWAVQAGAHFLDENGVRIPEQSSLTVGTENPVLCEISPLVSYFGEGLEVYLKD 485

Query: 475 KVLQTPLLLE 484
           + + +P LL+
Sbjct: 486 EDIHSPFLLD 495

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391326909|ref|XP_003737952.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like [Metaseiulus occidentalis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/428 (48%), Positives = 286/428 (66%), Gaps = 27/428 (6%)

Query: 79  PPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPS 138
           P +    +     + L  YRE GL+ ISRG+VA ++LAGGQGTRLG  YPKGMY+IGLPS
Sbjct: 106 PADNFGSIARASKNELAAYREAGLEAISRGEVAALLLAGGQGTRLGVPYPKGMYDIGLPS 165

Query: 139 GKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHV 197
           GK+L+ +QAE++ +L E+++ + G  G +PW+IMTSE T  PT EYFE+NG+FGL+  ++
Sbjct: 166 GKTLYNLQAERLIRLEELSERQTGKRGSIPWYIMTSEHTKEPTIEYFEKNGFFGLEGDNL 225

Query: 198 IFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYC 257
           + F+Q+ MP F+  G+I+L+ + R+A SPDG+GGLY+ L    IL+ M  RGIK IHVY 
Sbjct: 226 VVFEQKMMPSFTFDGKIILKEKHRLALSPDGNGGLYNVLYKRAILEDMKKRGIKFIHVYS 285

Query: 258 VDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCS 317
           VDNILVK+ DPTF+G+C+ +GA C  KVV+K TP E++GV+C V+G++++VEYSE+ +  
Sbjct: 286 VDNILVKIADPTFIGFCMSKGADCAAKVVKKATPTEAVGVVCRVNGRYRVVEYSEI-SAE 344

Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPN 377
             + ++  G L FN G+ICNH+F+ + L R V    ALK+H+A+KKIP L+ +G   +P 
Sbjct: 345 TAQKRNSDGSLTFNAGNICNHFFTFDFLTR-VSGKKALKYHVAKKKIPYLNNEGQVTKPE 403

Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           +PNGIKLE F+FD F   +N   WEV R DEFSPLKN+   +  D P TC   ++ LH R
Sbjct: 404 EPNGIKLEMFVFDVFEYSDNFAVWEVLREDEFSPLKNAD-GAEKDTPTTCRHHLYDLHHR 462

Query: 437 WIETAGGVVVADETGN---------------------TVCEIAPRVSYEGEGLEERVKGK 475
           +I  AGG  + DE G                       VCEI+P  SY+GE LE+ V+GK
Sbjct: 463 YIVNAGGTFI-DENGAPIALLPSSNRAVKSEKEVHEPIVCEISPLRSYDGELLEDLVQGK 521

Query: 476 VLQTPLLL 483
             + PL L
Sbjct: 522 QFRAPLHL 529

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193632108|ref|XP_001944680.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like [Acyrthosiphon pisum]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/409 (48%), Positives = 280/409 (68%), Gaps = 7/409 (1%)

Query: 79  PPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPS 138
           P      VN      L KY ++GL+ IS+G V V+++AGGQGTRLGA+YPKGMY+IGLPS
Sbjct: 72  PAELYGAVNRSPKELLIKYEQIGLEQISQGKVGVLLMAGGQGTRLGANYPKGMYDIGLPS 131

Query: 139 GKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHV 197
            KSL++IQ E+I  LI +A + FGS   LPWFIMTSE T  PTR+YF+ N YFGLD   +
Sbjct: 132 HKSLYRIQGERIRCLIRLANKDFGSSKGLPWFIMTSEHTMEPTRKYFKENNYFGLDEKKI 191

Query: 198 IFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYC 257
           IFF+Q  +P F+  G+I++E  +++++SPDG+GG+Y AL    +LD +   G++++H + 
Sbjct: 192 IFFEQYMLPAFTFDGKIVMEGINKISKSPDGNGGIYKALRDRNVLDEIKRLGVQYLHAHS 251

Query: 258 VDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCS 317
           VDNILVKV DP F+GYC+ + A CG KVVEK  P E LGV+C VDGK ++VEYSE+   +
Sbjct: 252 VDNILVKVADPIFIGYCITKNAECGAKVVEKAYPSEPLGVVCEVDGKFQVVEYSEITENT 311

Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMV-KEDAALKFHMARKKIPCLDEQGISQRP 376
             E ++  GRL F+ G+ICNH+F+ + L  +  K ++ LK H+A+KKI  +++ GI+ +P
Sbjct: 312 A-EKRNPDGRLTFSAGNICNHFFTTDFLNSVAHKYNSKLKLHVAKKKISFVNDDGIACKP 370

Query: 377 NKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHA 435
            +PNGIK+EKF+FD F  C  L  WEV RD EFS LKN+ + +  DNP T    V +LH 
Sbjct: 371 EEPNGIKMEKFIFDVFEFCNRLAVWEVERDEEFSALKNADVPNGKDNPKTARLDVFSLHR 430

Query: 436 RWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
           +++E +GG    D+     CEI+P +SY GEGL+  V G++  + L L+
Sbjct: 431 KYVEKSGGQFTTDDIE---CEISPLLSYAGEGLKHLVDGRIFNSLLELK 476

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321454588|gb|EFX65753.1| hypothetical protein DAPPUDRAFT_130439 [Daphnia pulex]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/448 (45%), Positives = 286/448 (63%), Gaps = 40/448 (8%)

Query: 75  VQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNI 134
           +Q  PP     +       L  Y  L ++ I +G VA ++LAGGQGTRLG DYPKGM+N+
Sbjct: 67  LQPIPPELHGAITRTSPELLRHYEHLAMEQIGQGRVAALLLAGGQGTRLGVDYPKGMFNV 126

Query: 135 GLPSGKSLFQIQAEKIDKLIEIAKEKFG-SGCLPWFIMTSELTDRPTREYFERNGYFGLD 193
           G PSGK+L+Q+QAE++ +L ++ +E+ G  G +PW+IMTSE T  PT+E+F R+ +FGL 
Sbjct: 127 GCPSGKTLYQLQAERLVRLQQLTEERTGLKGAIPWYIMTSEHTKEPTQEFFRRHDFFGLK 186

Query: 194 PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
             +++ F+Q  +PCFSL G+I+LET+  VA++PDG+GGLY AL    ILD M  R I++I
Sbjct: 187 EENLVVFEQGMLPCFSLDGKIILETKSHVAKAPDGNGGLYRALRDRRILDDMERRQIQYI 246

Query: 254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
           HVYCVDNILVK+ DP F+G+C+ +GA C  KVVEK  P E++GV+C V G +++VEYSE+
Sbjct: 247 HVYCVDNILVKMADPHFMGFCLSKGADCAAKVVEKAFPTEAVGVVCKVHGHYQVVEYSEI 306

Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGI 372
                 + ++  GRL F+ G+ICNH+F+ + L++++  ++  L+ H+A+KKI  +D  G 
Sbjct: 307 -TLPTAQKRNADGRLTFSAGNICNHFFTTQFLRKVISGQEGMLQHHIAKKKISHVDSTGK 365

Query: 373 SQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVH 431
             +P+KPNGIK+EKF+FD F   +N V WEV R DEFSPLKN       D P T   A++
Sbjct: 366 ICKPDKPNGIKMEKFVFDVFQFAKNFVVWEVLREDEFSPLKNGDQSGDKDTPTTARLALY 425

Query: 432 ALHARWIETAGGVVVAD-----------------------ETGNT-------------VC 455
           +LH R +  AGGV V D                       ET N              +C
Sbjct: 426 SLHQRQVLAAGGVFVDDEGIRLPLIPSTPTVAGPEAISKNETNNNEIQKTCSRREEPLIC 485

Query: 456 EIAPRVSYEGEGLEERVKGKVLQTPLLL 483
           EI+P VSY GEGLEE VKGK  + PLLL
Sbjct: 486 EISPLVSYAGEGLEELVKGKKFRPPLLL 513

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443696999|gb|ELT97581.1| hypothetical protein CAPTEDRAFT_160367 [Capitella teleta]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/431 (47%), Positives = 283/431 (65%), Gaps = 21/431 (4%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           S +Q  PP     V   D   L +Y E GL  I+ G VAV++LAGGQGTRLG +YPKGMY
Sbjct: 65  SYLQPIPPQATGSVVRTDPEKLKQYEEEGLVQIAEGRVAVLLLAGGQGTRLGVNYPKGMY 124

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSG--CLPWFIMTSELTDRPTREYFERNGYF 190
           + GLPS K+L+Q+QAE+I KL ++AK    SG   +PW+IMTSE T  PTR+YF R+ +F
Sbjct: 125 DCGLPSRKTLYQLQAERILKLQQLAKASHSSGPCVIPWYIMTSEATKEPTRQYFNRHKHF 184

Query: 191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGI 250
           GL P  V+FF+Q ++PC +  G+++LE+  +VA +PDG+GGLY AL  +G+++ M  RGI
Sbjct: 185 GLQPEQVVFFEQSTLPCMTFEGKVILESPFKVAHAPDGNGGLYRALTKSGVMEDMLARGI 244

Query: 251 KHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEY 310
           K+ HVYCVDNILVK+ DP F+G+C+ +GA+CG KVVEK  P E +GV+C     +++VEY
Sbjct: 245 KYTHVYCVDNILVKMADPVFMGFCISKGANCGAKVVEKAFPTEPVGVICKFGDHYQVVEY 304

Query: 311 SELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDE 369
           SE+      E ++  GRL FN G+ICNH+F+ E L+ +  E +  L+ H+A+KKIP  +E
Sbjct: 305 SEI-TLQTAEKRNSDGRLMFNAGNICNHFFTTEFLKMVCGEREDELRHHIAKKKIPFCNE 363

Query: 370 QGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQ 428
              + +P +PNGIK+EKF+FD F    +   WEV R DEFSPLKN+   +A D P T   
Sbjct: 364 NRETVKPCEPNGIKMEKFVFDVFQFTGDFACWEVLREDEFSPLKNAD-GAAKDTPTTARH 422

Query: 429 AVHALHARWIETAGGVVVAD---------------ETGNTVCEIAPRVSYEGEGLEERVK 473
           +++ LH R +  AGG  +                 E    VCEI+PR+SY GEGLE  VK
Sbjct: 423 SLYNLHYRHVLKAGGKFIRKDGSGVPHIASRSEDAEDALVVCEISPRLSYAGEGLESAVK 482

Query: 474 GKVLQTPLLLE 484
           GK   +PL+L+
Sbjct: 483 GKGFMSPLVLK 493

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|289740265|gb|ADD18880.1| UDP-N-acetylglucosamine pyrophosphorylase [Glossina morsitans morsitans]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/413 (51%), Positives = 276/413 (66%), Gaps = 12/413 (2%)

Query: 75  VQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNI 134
           +Q  P + L  ++      L  YRE GLK IS G VAV+++AGGQGTRLG   PKGM+N+
Sbjct: 68  LQPIPDHNLISISRTSEERLSAYREQGLKQISEGHVAVLLMAGGQGTRLGFANPKGMFNV 127

Query: 135 GLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFERNGYFGLD 193
           GL S K+LF IQAE+I +L E+A E  G  G + W+IMTSE T +PT +YF  N Y GL 
Sbjct: 128 GLQSNKTLFCIQAERILRLQELAAEITGKKGIITWYIMTSEHTIKPTYDYFTANNYMGLQ 187

Query: 194 PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
             +VIFF+Q S+PCF   G+I+L+ + R+AR+PDG+GG+Y AL   GILD M  RGI ++
Sbjct: 188 KENVIFFEQGSLPCFEFDGKIILDQKHRIARAPDGNGGIYRALKQQGILDDMEKRGILYL 247

Query: 254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
           H + VDNIL KV DP F+GYCV+  A C  KVVEK  P E++GV+  VDGK+++VEYSE+
Sbjct: 248 HAHSVDNILTKVADPVFIGYCVQANADCAAKVVEKSAPNEAVGVVAIVDGKYQVVEYSEI 307

Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGI 372
              +  E ++  GRL F+ G+ICNH+F+ E LQ++    +  LK H+A+KKIP +D  G 
Sbjct: 308 STKTA-ELRNADGRLTFSAGNICNHFFTAEFLQKVGNIYERELKLHVAKKKIPFVDNSGK 366

Query: 373 SQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSA-SDNPVTCCQAV 430
              P+KPNGIK+EKF+FD F   EN VA EV RD EFS LKNS  DSA  D P T    +
Sbjct: 367 RITPDKPNGIKIEKFVFDVFQFAENFVAMEVPRDEEFSALKNS--DSAGKDCPSTARADL 424

Query: 431 HALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLL 483
           + LH ++IE AGGVV  D+     CEI+P VSY GE L   VKGK   TPL L
Sbjct: 425 YRLHKKYIEAAGGVVHGDQ-----CEISPYVSYAGENLSTLVKGKSFTTPLHL 472

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374866|gb|AEE62574.1| unknown [Dendroctonus ponderosae]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/414 (49%), Positives = 281/414 (67%), Gaps = 9/414 (2%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           + +Q  P +        D   L  YR +GL+ IS+G VAV++LAGGQGTRLG +YPKGMY
Sbjct: 66  ARMQPVPADQFGSEKNADKEELMTYRSIGLEEISKGRVAVLLLAGGQGTRLGVNYPKGMY 125

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFERNGYFG 191
           ++ LPSGKSLFQIQAE+I ++I +AK++ G  G + W+IMTS  T+  T+++ E+N YFG
Sbjct: 126 SVNLPSGKSLFQIQAERIRRVINLAKQETGRVGSVVWYIMTSGPTNATTKKFLEKNDYFG 185

Query: 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK 251
           L+   VI F+Q  +PCF   G++LL+ ++ VA +PDG+GG+Y AL    ILD M  RGIK
Sbjct: 186 LNQDDVILFQQGLLPCFDFDGKLLLDEKNAVAMAPDGNGGIYRALSERHILDDMEQRGIK 245

Query: 252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS 311
           ++H + VDNILVKV DP FLGYCV++ A CG KVV K +P E++GV+C VDGK+++VEYS
Sbjct: 246 YVHAHSVDNILVKVADPVFLGYCVKKKAECGAKVVSKNSPNEAVGVVCKVDGKYQVVEYS 305

Query: 312 ELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQ 370
           E+   +   T D +G+L F+ G+ICNH+FS   LQR+ K+ ++ LK H+A+KKIP +D  
Sbjct: 306 EITEKTANLT-DPSGKLVFSSGNICNHFFSTSFLQRVAKQHESELKLHVAKKKIPYVDRN 364

Query: 371 GISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQA 429
           G   +P++PNGIK+EKF+FD F   +  V WEV R  EFS LKN P     D P T  + 
Sbjct: 365 GDHIKPSEPNGIKIEKFIFDVFQFTDKFVTWEVPRISEFSALKN-PDSVGKDCPSTAKRD 423

Query: 430 VHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLL 483
           +  LH  +IE AGG+V    T     EI+P +SY GE +E+RVKGK  +  + L
Sbjct: 424 LLVLHKSYIEEAGGIV----TEGVDVEISPLLSYAGEHIEQRVKGKRFEGTISL 473

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291397534|ref|XP_002716005.1| PREDICTED: UDP-N-acetylglucosamine pyrophosphorylase 1 isoform 2 [Oryctolagus cuniculus]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/423 (47%), Positives = 283/423 (66%), Gaps = 20/423 (4%)

Query: 80  PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
           P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct: 73  PREVLGSATRDQDQLQVWESEGLSQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSH 132

Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
           K+LFQIQAE+I KL ++A++++G+ C+ PW+IMTS  T   T+E+F ++ YFGL   +VI
Sbjct: 133 KTLFQIQAERILKLQQLAEKRYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVI 192

Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           FF+Q  +P  S  G+++LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKVILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252

Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311

Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
            + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct: 312 AQKRSSDGRLMFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGQLIKPD 371

Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVVREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431

Query: 437 WIETAGGVVVADETGNTV---------------CEIAPRVSYEGEGLEERVKGKVLQTPL 481
           W+  AGG  + DE G+ +               CEI+P +SY GEGLE  V  K    PL
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPL 490

Query: 482 LLE 484
           +++
Sbjct: 491 IID 493

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
UNIPROTKB|F1MJP7	522	UAP1 "Uncharacterized protein"	0.828	0.768	0.480	3.5e-107
UNIPROTKB|F1NFV9	413	UAP1 "Uncharacterized protein"	0.789	0.924	0.491	7.2e-107
UNIPROTKB|Q16222	522	UAP1 "UDP-N-acetylhexosamine p	0.828	0.768	0.477	3.2e-104
MGI|MGI:1334459	522	Uap1 "UDP-N-acetylglucosamine	0.793	0.735	0.487	1.4e-103
UNIPROTKB|F1P7W7	522	UAP1 "Uncharacterized protein"	0.826	0.766	0.476	2.8e-103
UNIPROTKB|E1BZG2	511	UAP1L1 "Uncharacterized protei	0.838	0.794	0.490	3.3e-102
UNIPROTKB|F1NGE7	499	UAP1L1 "Uncharacterized protei	0.838	0.813	0.490	3.3e-102
UNIPROTKB|F1S210	521	UAP1 "Uncharacterized protein"	0.785	0.729	0.492	4.1e-102
FB|FBgn0259749	536	mmy "mummy" [Drosophila melano	0.842	0.761	0.489	5.4e-102
ZFIN|ZDB-GENE-030131-1233	504	uap1 "UDP-N-acteylglucosamine	0.861	0.827	0.471	6.9e-102

UNIPROTKB|F1MJP7 UAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 969 (346.2 bits), Expect = 3.5e-107, Sum P(3) = 3.5e-107
 Identities = 196/408 (48%), Positives = 275/408 (67%)

Query:    63 GYQELSGVQLSEVQVFP-PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGT 121
             G+   S  +  + ++ P P  + G  T D   L  +   GL  IS+  VAV++LAGGQGT
Sbjct:    55 GFNHSSQPEKVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGT 114

Query:   122 RLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPT 180
             RLG  YPKGMY++GLPS K+LFQIQAE+I KL ++A++  GS C+ PW+IMTS  T   T
Sbjct:   115 RLGVAYPKGMYDVGLPSHKTLFQIQAERILKLQQLAEKYHGSKCIIPWYIMTSGRTMEST 174

Query:   181 REYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATG 240
             +E+F ++ YFGL   +VIFF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  
Sbjct:   175 KEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQN 234

Query:   241 ILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN 300
             I++ M  RGI  IHVYCVDNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C 
Sbjct:   235 IVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCR 294

Query:   301 VDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHM 359
             VDG +++VEYSE+ + +  + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+
Sbjct:   295 VDGVYQVVEYSEI-SLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNIYEPQLQHHV 353

Query:   360 ARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDS 418
             A+KKIP +D QG   +P+KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +
Sbjct:   354 AQKKIPFVDSQGQLVKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQN 413

Query:   419 ASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGE 466
               DNP T   A+ +LH  W+  AGG  + DE G+ +  I PR +  G+
Sbjct:   414 GKDNPTTARHALMSLHHCWVLNAGGHFI-DENGSRLPAI-PRSATHGK 459

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F1NFV9 UAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 992 (354.3 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
 Identities = 198/403 (49%), Positives = 271/403 (67%)

Query:   101 GLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEK 160
             GL  I+ G V  ++LAGGQGTRLG  YPKGM ++GLPS KSLF +QA+++ +L ++A+E+
Sbjct:     1 GLAEIAAGRVGALLLAGGQGTRLGVPYPKGMCDVGLPSRKSLFHLQAQRLRRLQQLAEER 60

Query:   161 FGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETR 219
              G+ C +PW+IMTS  T   T+E+F+++ YFGL   +VIFF+Q  +P     G+ILLE +
Sbjct:    61 HGTACSIPWYIMTSGRTVESTKEFFQKHRYFGLKKENVIFFQQGMLPALGFDGKILLEEK 120

Query:   220 DRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGA 279
              ++A +PDG+GGLY ALG  GI+D M  RG++ +HVYCVDNILVKV DP F+G+C+E+GA
Sbjct:   121 GKIAMAPDGNGGLYRALGVHGIVDDMERRGVQSVHVYCVDNILVKVADPRFIGFCLEKGA 180

Query:   280 HCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY 339
              CG KVVEK  P E +GV+C VDG +++VEYSE+ +    + +   GRL FN G+I NHY
Sbjct:   181 DCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLDTAQKRGPDGRLLFNAGNIANHY 239

Query:   340 FSLECLQRMVKE-DAALKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFPLCEN 397
             F+   L+ +V   +  L+ H+A KKIP +D E G   +P KPNGIK+EKF+FD F   + 
Sbjct:   240 FTTSFLKDVVNTYEPQLQHHVAEKKIPHVDIETGQLVQPEKPNGIKMEKFVFDIFQFSKK 299

Query:   398 LVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTV-- 454
              V +EV R DEFSPLKN+   +  DNP T   A+ +LH RW+  AGG  V DE G  +  
Sbjct:   300 FVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHRWVLNAGGHFV-DENGTRLPA 358

Query:   455 -------------CEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
                          CEI+P VSY GEGLEE VK +  + PL+++
Sbjct:   359 IPRLKDASDVPIQCEISPLVSYGGEGLEELVKEREFRAPLVID 401

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q16222 UAP1 "UDP-N-acetylhexosamine pyrophosphorylase" [Homo sapiens (taxid:9606)]

 Score = 969 (346.2 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
 Identities = 195/408 (47%), Positives = 277/408 (67%)

Query:    63 GYQELSGVQLSEVQVFP-PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGT 121
             G+ + S  +  + ++ P P  + G  T D   L  +   GL  IS+  VAV++LAGGQGT
Sbjct:    55 GFNQSSHQKNVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGT 114

Query:   122 RLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPT 180
             RLG  YPKGMY++GLPS K+LFQIQAE+I KL ++A++ +G+ C+ PW+IMTS  T   T
Sbjct:   115 RLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMEST 174

Query:   181 REYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATG 240
             +E+F ++ YFGL   +VIFF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  
Sbjct:   175 KEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQN 234

Query:   241 ILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN 300
             I++ M  RGI  IHVYCVDNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C 
Sbjct:   235 IVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCR 294

Query:   301 VDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHM 359
             VDG +++VEYSE+ + +  + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+
Sbjct:   295 VDGVYQVVEYSEI-SLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHV 353

Query:   360 ARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDS 418
             A+KKIP +D QG   +P+KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +
Sbjct:   354 AQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQN 413

Query:   419 ASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGE 466
               DNP T   A+ +LH  W+  AGG  + DE G+ +  I PR +  G+
Sbjct:   414 GKDNPTTARHALMSLHHCWVLNAGGHFI-DENGSRLPAI-PRSATNGK 459

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0006048 "UDP-N-acetylglucosamine biosynthetic process" evidence=IEA;TAS

GO:0003977 "UDP-N-acetylglucosamine diphosphorylase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:1334459 Uap1 "UDP-N-acetylglucosamine pyrophosphorylase 1" [Mus musculus (taxid:10090)]

 Score = 965 (344.8 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
 Identities = 190/390 (48%), Positives = 267/390 (68%)

Query:    80 PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
             P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct:    73 PRQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSH 132

Query:   140 KSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
             K+LFQIQAE+I KL ++A++  G+ C +PW+IMTS  T   T+E+F ++ +FGL   +V+
Sbjct:   133 KTLFQIQAERILKLQQLAEKHHGNKCTIPWYIMTSGRTMESTKEFFTKHKFFGLKKENVV 192

Query:   199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
             FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct:   193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGICSIHVYCV 252

Query:   259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
             DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct:   253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311

Query:   319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPN 377
              + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct:   312 AQRRSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGYFIKPD 371

Query:   378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
             KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct:   372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431

Query:   437 WIETAGGVVVADETGNTVCEIAPRVSYEGE 466
             W+  AGG  + DE G+ +  I PR +  G+
Sbjct:   432 WVLNAGGHFI-DENGSRLPAI-PRSATNGK 459

GO:0003977 "UDP-N-acetylglucosamine diphosphorylase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006047 "UDP-N-acetylglucosamine metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISO

UNIPROTKB|F1P7W7 UAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 962 (343.7 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
 Identities = 194/407 (47%), Positives = 275/407 (67%)

Query:    64 YQELSGVQLSEVQVFP-PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTR 122
             + + S  +  + ++ P P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTR
Sbjct:    56 FNQSSQQEKMDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTR 115

Query:   123 LGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTR 181
             LG  YPKGMY++GLPS K+LFQIQAE+I KL ++A++  G+ C +PW+IMTS  T   T+
Sbjct:   116 LGVAYPKGMYDVGLPSHKTLFQIQAERILKLQQLAEKYHGNKCVIPWYIMTSGRTMESTK 175

Query:   182 EYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGI 241
             E+F ++ YFGL   +VIFF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I
Sbjct:   176 EFFTKHKYFGLQKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNI 235

Query:   242 LDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV 301
             ++ M  RGI  IHVYCVDNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C V
Sbjct:   236 VEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV 295

Query:   302 DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMA 360
             DG +++VEYSE+ + +  + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A
Sbjct:   296 DGVYQVVEYSEI-SLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNIYEPQLQHHVA 354

Query:   361 RKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSA 419
             +KKIP +D QG   +P+KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   + 
Sbjct:   355 QKKIPYVDSQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNG 414

Query:   420 SDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGE 466
              DNP T   A+ +LH  W+  AGG  + DE G+ +  I PR +  G+
Sbjct:   415 KDNPTTARHALLSLHHCWVLNAGGHFI-DENGSRLPAI-PRSATNGK 459

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|E1BZG2 UAP1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 211/430 (49%), Positives = 287/430 (66%)

Query:    75 VQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNI 134
             V+  P   L  V     + L ++ + GL  IS+  VAV++LAGGQGTRLG  YPKGMYN+
Sbjct:    66 VEPLPAAVLGSVRHCGPAALQRWEDEGLHQISQNKVAVLLLAGGQGTRLGVSYPKGMYNV 125

Query:   135 GLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLD 193
             GLPSGK+L+QIQAE+I K+ ++A ++    C +PW+IMTSE T  PT E+F ++ YF LD
Sbjct:   126 GLPSGKTLYQIQAERIRKVEQLAGQRHHCKCTIPWYIMTSEFTLGPTEEFFVKHSYFNLD 185

Query:   194 PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
              A+VI F+QR +P  +  G+ +LE + ++A +PDG+GGLY AL    ILD M  RGI+++
Sbjct:   186 KANVIMFEQRMLPAVTFDGKAILEEKGKIAMAPDGNGGLYRALVDNKILDDMKQRGIQYV 245

Query:   254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDG-KHKIVEYSE 312
             HVYCVDNILVK+ DP F+G+CV +GA CG KVVEK  P E +GV+C VDG  H +VEYSE
Sbjct:   246 HVYCVDNILVKMADPVFIGFCVSKGADCGAKVVEKAYPTEPIGVVCRVDGVSHVVVEYSE 305

Query:   313 LGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV-KEDAALKFHMARKKIPCLDEQG 371
             +      + +   G L +++G+ICNH+F++E LQ +  K ++ LK H+A KK+P +DE+G
Sbjct:   306 ISP-ETAQQRRPDGGLMYSVGNICNHFFTVEFLQTVAQKHESQLKHHVAIKKVPYIDEEG 364

Query:   372 ISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDE-FSPLKNSPLDSA-SDNPVTCCQA 429
                +P KPNGIKLEKF+FD F   +N VA+EV R+E FSPLKN+  D+A +DNP T  Q+
Sbjct:   365 NLVKPLKPNGIKLEKFVFDVFQFSKNFVAFEVLREEEFSPLKNA--DTAETDNPTTARQS 422

Query:   430 VHALHARWIETAGGVVVADETG----------NT-----VCEIAPRVSYEGEGLEERVKG 474
             + A H RW   AG   + DE G           T     VCEI+P VSY GEGLE  +K 
Sbjct:   423 LLAQHYRWALKAGARFL-DEDGCRIPEKLSLSGTEDPPAVCEISPLVSYFGEGLEAYMKN 481

Query:   475 KVLQTPLLLE 484
             K   +P +L+
Sbjct:   482 KDFCSPFILD 491

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F1NGE7 UAP1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 211/430 (49%), Positives = 287/430 (66%)

Query:    75 VQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNI 134
             V+  P   L  V     + L ++ + GL  IS+  VAV++LAGGQGTRLG  YPKGMYN+
Sbjct:    62 VEPLPAAVLGSVRHCGPAALQRWEDEGLHQISQNKVAVLLLAGGQGTRLGVSYPKGMYNV 121

Query:   135 GLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLD 193
             GLPSGK+L+QIQAE+I K+ ++A ++    C +PW+IMTSE T  PT E+F ++ YF LD
Sbjct:   122 GLPSGKTLYQIQAERIRKVEQLAGQRHHCKCTIPWYIMTSEFTLGPTEEFFVKHSYFNLD 181

Query:   194 PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
              A+VI F+QR +P  +  G+ +LE + ++A +PDG+GGLY AL    ILD M  RGI+++
Sbjct:   182 KANVIMFEQRMLPAVTFDGKAILEEKGKIAMAPDGNGGLYRALVDNKILDDMKQRGIQYV 241

Query:   254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDG-KHKIVEYSE 312
             HVYCVDNILVK+ DP F+G+CV +GA CG KVVEK  P E +GV+C VDG  H +VEYSE
Sbjct:   242 HVYCVDNILVKMADPVFIGFCVSKGADCGAKVVEKAYPTEPIGVVCRVDGVSHVVVEYSE 301

Query:   313 LGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV-KEDAALKFHMARKKIPCLDEQG 371
             +      + +   G L +++G+ICNH+F++E LQ +  K ++ LK H+A KK+P +DE+G
Sbjct:   302 ISP-ETAQQRRPDGGLMYSVGNICNHFFTVEFLQTVAQKHESQLKHHVAIKKVPYIDEEG 360

Query:   372 ISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDE-FSPLKNSPLDSA-SDNPVTCCQA 429
                +P KPNGIKLEKF+FD F   +N VA+EV R+E FSPLKN+  D+A +DNP T  Q+
Sbjct:   361 NLVKPLKPNGIKLEKFVFDVFQFSKNFVAFEVLREEEFSPLKNA--DTAETDNPTTARQS 418

Query:   430 VHALHARWIETAGGVVVADETG----------NT-----VCEIAPRVSYEGEGLEERVKG 474
             + A H RW   AG   + DE G           T     VCEI+P VSY GEGLE  +K 
Sbjct:   419 LLAQHYRWALKAGARFL-DEDGCRIPEKLSLSGTEDPPAVCEISPLVSYFGEGLEAYMKN 477

Query:   475 KVLQTPLLLE 484
             K   +P +L+
Sbjct:   478 KDFCSPFILD 487

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F1S210 UAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 949 (339.1 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
 Identities = 190/386 (49%), Positives = 264/386 (68%)

Query:    80 PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
             P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct:    73 PREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSH 132

Query:   140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
             K+LFQIQAE+I KL ++A++  G+ C+ PW+IMTS  T   T+E+F ++ YFGL   +VI
Sbjct:   133 KTLFQIQAERILKLQQLAEKYHGNKCIIPWYIMTSGRTMDSTKEFFTKHKYFGLKKENVI 192

Query:   199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
             FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct:   193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252

Query:   259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
             DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct:   253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311

Query:   319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
              + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D  G   +P+
Sbjct:   312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNIYEPQLQHHVAQKKIPYVDSLGQLIKPD 371

Query:   378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
             KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct:   372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431

Query:   437 WIETAGGVVVADETGNTVCEIAPRVS 462
             W+  AGG  + DE G+ +  I PR +
Sbjct:   432 WVLNAGGHFI-DENGSRLPAI-PRAT 455

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

FB|FBgn0259749 mmy "mummy" [Drosophila melanogaster (taxid:7227)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 206/421 (48%), Positives = 282/421 (66%)

Query:    68 SGVQLSE-VQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGAD 126
             +G++L + +Q  P   L  +       L  YR+ GL  IS G VAV+++AGGQGTRLG D
Sbjct:   113 NGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISNGHVAVLLMAGGQGTRLGFD 172

Query:   127 YPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFE 185
             +PKGMY++GL S K+LF+IQAE+I KL E+A+E  G  G + W+IMTSE T +PT +YF 
Sbjct:   173 HPKGMYDVGLQSRKTLFRIQAERILKLEELAQEANGKRGHITWYIMTSEHTVQPTYDYFV 232

Query:   186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTM 245
              N +FGL   +V+ F+Q S+PCF   G I+L+ + RVAR+PDG+GG+Y A+   GILD M
Sbjct:   233 ANNFFGLKAENVLLFEQGSLPCFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDM 292

Query:   246 HTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKH 305
               RG+ ++H + VDNIL+KV DP F+GYCV++ A C  KVVEK  P E++GV+  VDGK+
Sbjct:   293 QKRGVLYLHAHSVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKY 352

Query:   306 KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKI 364
             ++VEYSE+ +    E ++  GRL F+ G+ICNH+FS   LQ++    +  LK H+A+KKI
Sbjct:   353 QVVEYSEI-SAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELKLHVAKKKI 411

Query:   365 PCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDE-FSPLKNSPLDSAS-DN 422
             P +D  G    P+KPNGIK+EKF+FD F   +  VA EV RDE FS LKNS  D+A  D 
Sbjct:   412 PFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRDEEFSALKNS--DAAGKDC 469

Query:   423 PVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLL 482
             P T    +H LH ++IE AGG+V  +     VCEI+P V+Y GE L   V+GK   +P+ 
Sbjct:   470 PSTARSDLHRLHKKYIEGAGGIVHGE-----VCEISPFVTYAGENLASHVEGKSFTSPVY 524

Query:   483 L 483
             L
Sbjct:   525 L 525

GO:0003977 "UDP-N-acetylglucosamine diphosphorylase activity" evidence=ISS;IMP

GO:0007417 "central nervous system development" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0006035 "cuticle chitin biosynthetic process" evidence=IMP

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0001838 "embryonic epithelial tube formation" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

ZFIN|ZDB-GENE-030131-1233 uap1 "UDP-N-acteylglucosamine pyrophosphorylase 1" [Danio rerio (taxid:7955)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 208/441 (47%), Positives = 289/441 (65%)

Query:    61 GHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQG 120
             G   QE    ++  V   P + L  V T D   L ++ + GL+ I+   VAV++LAGGQG
Sbjct:    57 GQSSQEKVDTRMEPV---PRDVLGSV-TRDRECLKEWEKEGLRCIAENKVAVLLLAGGQG 112

Query:   121 TRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRP 179
             TRLG  +PKGMY++GLPS K+LFQIQAE+I KL ++A+++    C +PW+IMTS  T   
Sbjct:   113 TRLGVSFPKGMYDVGLPSHKTLFQIQAERIRKLEQLAEKQHSRKCCIPWYIMTSGRTMDM 172

Query:   180 TREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGAT 239
             T+++F ++ YFGL   +V+FF+Q  +P    +G+I+LE + ++A +PDG+GGLY ALG  
Sbjct:   173 TKDFFIQHKYFGLKEENVVFFQQGMLPAMDFNGKIILEGKCKLAMAPDGNGGLYRALGTQ 232

Query:   240 GILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLC 299
              I+  M TRGI +IHVYCVDNILVKV DP F+G+C  +GA CG KVVEK  P E++GV+C
Sbjct:   233 NIVKDMETRGISYIHVYCVDNILVKVADPAFIGFCTLKGADCGAKVVEKTNPTEAVGVVC 292

Query:   300 NVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFH 358
              VDG++++VEYSE+   +  E +   GRL FN G+I NH+F+L  L+ +V+  +  L+ H
Sbjct:   293 KVDGRYQVVEYSEI-TLATAEKRSTDGRLMFNAGNIANHFFTLTFLREIVRTHEPQLQHH 351

Query:   359 MARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLD 417
             +A+KKIP ++ +G   +P+KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   
Sbjct:   352 VAQKKIPYVNTEGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQ 411

Query:   418 SASDNPVTCCQAVHALHARWIETAGGVVVADETGNTV---------------CEIAPRVS 462
                DNP T   A+ +LH RWI+ AGG  V DE G  +               CEI+P VS
Sbjct:   412 DGKDNPTTARHALMSLHHRWIQNAGGHFV-DENGTHIPAIPSLKDGTDLPIKCEISPLVS 470

Query:   463 YEGEGLEERVKGKVLQTPLLL 483
             Y GEGLE  V  KV Q  L++
Sbjct:   471 YGGEGLEHLVNEKVFQPTLII 491

GO:0008152 "metabolic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94617	UAP1_SCHPO	2, ., 7, ., 7, ., 2, 3	0.4048	0.8099	0.8252	yes	N/A
Q5HE34	URTF_STAAC	2, ., 7, ., 7, ., -	0.3746	0.6095	0.7468	yes	N/A
Q5HM59	URTF_STAEQ	2, ., 7, ., 7, ., -	0.3793	0.6053	0.7417	yes	N/A
Q6G7E3	URTF_STAAS	2, ., 7, ., 7, ., -	0.3777	0.6095	0.7468	yes	N/A
Q2YYH4	URTF_STAAB	2, ., 7, ., 7, ., -	0.3746	0.6095	0.7468	yes	N/A
Q7A4A4	URTF_STAAN	2, ., 7, ., 7, ., -	0.3777	0.6095	0.7468	yes	N/A
Q6GEQ8	URTF_STAAR	2, ., 7, ., 7, ., -	0.3757	0.6115	0.7493	yes	N/A
Q4L846	URTF_STAHJ	2, ., 7, ., 7, ., -	0.3738	0.6095	0.7468	yes	N/A
Q54GN5	UAP1_DICDI	2, ., 7, ., 7, ., 2, 3	0.4373	0.8119	0.8069	yes	N/A
Q16222	UAP1_HUMAN	2, ., 7, ., 7, ., 2, 3	0.4613	0.8326	0.7720	yes	N/A
O64765	UAP1_ARATH	2, ., 7, ., 7, ., 2, 3	0.3952	0.8285	0.7988	yes	N/A
Q18493	UAP1_CAEEL	2, ., 7, ., 7, ., 2, 3	0.4031	0.7479	0.7479	yes	N/A
Q8CNG6	URTF_STAES	2, ., 7, ., 7, ., -	0.3793	0.6053	0.7417	yes	N/A
Q99S95	URTF_STAAM	2, ., 7, ., 7, ., -	0.3777	0.6095	0.7468	yes	N/A
Q8SQS1	UAP1_ENCCU	2, ., 7, ., 7, ., 2, 3	0.3827	0.6198	0.8955	yes	N/A
Q91YN5	UAP1_MOUSE	2, ., 7, ., 7, ., 2, 3	0.4568	0.8326	0.7720	yes	N/A
Q2FW81	URTF_STAA8	2, ., 7, ., 7, ., -	0.3746	0.6095	0.7468	yes	N/A
P43123	UAP1_YEAST	2, ., 7, ., 7, ., 2, 3	0.4160	0.8119	0.8238	yes	N/A
Q7A0A0	URTF_STAAW	2, ., 7, ., 7, ., -	0.3777	0.6095	0.7468	yes	N/A
Q49ZB5	URTF_STAS1	2, ., 7, ., 7, ., -	0.3780	0.6198	0.7594	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7.23	0.914
3rd Layer	2.7.7	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	484
cd04193	323	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl	1e-170
PLN02435	493	PLN02435, PLN02435, probable UDP-N-acetylglucosami	1e-115
PTZ00339	482	PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph	1e-109
COG4284	472	COG4284, COG4284, UDP-glucose pyrophosphorylase [C	7e-86
cd04180	266	cd04180, UGPase_euk_like, Eukaryotic UGPase-like i	6e-67
pfam01704	417	pfam01704, UDPGP, UTP--glucose-1-phosphate uridyly	5e-54
cd06424	315	cd06424, UGGPase, UGGPase catalyzes the synthesis	3e-18
PLN02830	615	PLN02830, PLN02830, UDP-sugar pyrophosphorylase	6e-17
cd04193	323	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl	2e-10
cd00897	300	cd00897, UGPase_euk, Eukaryotic UGPase catalyses t	3e-08
PLN02474	469	PLN02474, PLN02474, UTP--glucose-1-phosphate uridy	4e-08
PLN02435	493	PLN02435, PLN02435, probable UDP-N-acetylglucosami	5e-06
PTZ00339	482	PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph	2e-05
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	9e-05
COG4284	472	COG4284, COG4284, UDP-glucose pyrophosphorylase [C	1e-04
PLN02728	252	PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phos	0.001
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	0.003
cd02503	181	cd02503, MobA, MobA catalyzes the formation of mol	0.004

>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

 Score =  482 bits (1244), Expect = e-170
 Identities = 172/323 (53%), Positives = 230/323 (71%), Gaps = 4/323 (1%)

Query: 96  KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
           ++ E GLK I+ G VAV++LAGGQGTRLG D PKGM+ +GLPS KSLFQ+QAE+I KL E
Sbjct: 2   EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQE 61

Query: 156 IAKEKFG-SGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEI 214
           +A E  G    +PW+IMTSE T   TR++F+ N YFGLDP  V FF+Q  +PC    G+I
Sbjct: 62  LAGEASGKKVPIPWYIMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKI 121

Query: 215 LLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYC 274
           LLE + ++A +P+G+GGLY AL   GIL+ M  RGIK+IHVY VDNILVKV DP F+G+C
Sbjct: 122 LLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFC 181

Query: 275 VEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGS 334
           + +GA  G KVV K  P E +GV+  VDGK ++VEYSE+ +    +  D  G L++N G+
Sbjct: 182 ISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGELQYNAGN 240

Query: 335 ICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFP 393
           I NH+FSL+ L++  + +   L +H+A+KKIP +D +G   +P++PNGIKLE F+FD FP
Sbjct: 241 IANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFP 300

Query: 394 LCENLVAWEVTR-DEFSPLKNSP 415
             +N V  EV R +EFSPLKN+ 
Sbjct: 301 FAKNFVCLEVDREEEFSPLKNAD 323

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323

>gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine pyrophosphorylase

 Score =  349 bits (896), Expect = e-115
 Identities = 173/427 (40%), Positives = 255/427 (59%), Gaps = 29/427 (6%)

Query: 69  GVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 128
           G+ +  ++  P N +S V         ++ ++GLK IS G +AV++L+GGQGTRLG+  P
Sbjct: 76  GLPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDP 135

Query: 129 KGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-----LPWFIMTSELTDRPTREY 183
           KG +NIGLPSGKSLFQ+QAE+I  +  +A +    G      + W+IMTS  TD  TR++
Sbjct: 136 KGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195

Query: 184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILD 243
           FE + YFGL+   V FF+Q ++PC S  G+ ++ET  +VA++PDG+GG+Y AL ++ +L+
Sbjct: 196 FESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLE 255

Query: 244 TMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN--V 301
            M +RGIK++  Y VDN LV+V DPTFLGY +++G     KVV K  P E +GV      
Sbjct: 256 DMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGK 315

Query: 302 DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM---VKEDAALKFH 358
            G   +VEYSEL          QTGRL++   ++C H F+L+ L ++   +++D+   +H
Sbjct: 316 GGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSI--YH 373

Query: 359 MARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLD 417
           +A KKIP +   G +       G+KLE+F+FDAFP   +   +EV R +EF+P+KN+   
Sbjct: 374 LAEKKIPSIH--GYTM------GLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNAN-G 424

Query: 418 SASDNPVTCCQAVHALHARWIETAGGVVVAD----ETGNTVCEIAPRVSYEGEGLEERVK 473
           S  D P +    V  LH RW+  AGG +        TG    E++P  SY GE LE   +
Sbjct: 425 SNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATG---VEVSPLCSYAGENLEAICR 481

Query: 474 GKVLQTP 480
           G+    P
Sbjct: 482 GRTFHAP 488

Length = 493

>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional

 Score =  330 bits (849), Expect = e-109
 Identities = 154/414 (37%), Positives = 233/414 (56%), Gaps = 15/414 (3%)

Query: 79  PPNCLSGVNTV-DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLP 137
           PPN  + ++         + +E GL++I +G+VAV++LAGG GTRLG+D PKG+      
Sbjct: 75  PPNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPV 134

Query: 138 SGKSLFQIQAEKIDKLIEIAKEKFGSG---CLPWFIMTSELTDRPTREYFERNGYFGLDP 194
             K+LFQ   EK+ +L E+A    G G    +   ++TS      TR++ E N +FGLD 
Sbjct: 135 KKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDK 194

Query: 195 AHVIFFKQRSMPCFSL-SGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
             VIFFKQ S+PC+   +G  ++ ++  +  +P G+G ++ AL     L  +  +GIK++
Sbjct: 195 EQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYV 254

Query: 254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
            V  +DNIL KV DP F+G      AH  +    K    ES+GV C  D + ++VEY+E+
Sbjct: 255 QVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEI 314

Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE--DAALKFHMARKKIPCLDEQG 371
               +   +  TG L FN G+IC+H FSL+ L+++       +  +H ARKKIP      
Sbjct: 315 NERILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPY----- 369

Query: 372 ISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAV 430
           I+   +K  GIKLE F+FD F   +N++  EV R DEF+P+KN+   +A+D  +   + +
Sbjct: 370 INGPTDKTMGIKLEAFIFDIFRYAKNVLILEVDREDEFAPIKNAD-GAAADTILNAQKLL 428

Query: 431 HALHARWIETAGGVVVA-DETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLL 483
            +LH RW+E A   V      G  +CEI+P VSY GEGL +    K+L  P +L
Sbjct: 429 LSLHTRWLEAALETVAGNPREGLNLCEISPLVSYGGEGLFQYPGKKILGLPEIL 482

Length = 482

>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score =  271 bits (695), Expect = 7e-86
 Identities = 139/413 (33%), Positives = 192/413 (46%), Gaps = 29/413 (7%)

Query: 83  LSGVNTVDASTLGKYRELGLKL--ISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGK 140
           +   N  D     K    G  L  I  G +AV+ LAGGQGTRLG D PKG++ +    GK
Sbjct: 77  IRPPNPDDVVDYEKKILEGWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGK 134

Query: 141 SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFF 200
           SLF +QAE+I  L            +P +IMTS L    T  YF+ N YFGLD   + FF
Sbjct: 135 SLFDLQAEQIKYLNRQYNVD-----VPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFF 188

Query: 201 KQRSMP-CFSLSGEILLETRDR-VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
            Q   P   S SG   LE+ D  +A  P G+G L+ AL ++GIL+ +  +GI+++ V  +
Sbjct: 189 VQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNI 248

Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DN L    D  FLG+  E      ++  +K    E +G+L   DGK +++EYSE+ N   
Sbjct: 249 DN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHR 307

Query: 319 FETQDQTGRLKFNLG-SICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPN 377
            E     G+LK+    +I  H FS++ L+     +  L  H A KKIP LD         
Sbjct: 308 EEF-TSDGKLKYFNTNNIWLHLFSVKFLKEAAYLN--LPIHKAIKKIPQLDNIIQLTTAI 364

Query: 378 KPNGIKLEK-FL-FDAFPL--CENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHA 432
             N  K E  F+ FD F     EN     V R  EFSPLKN    S  DN  T    +  
Sbjct: 365 GKNISKFENEFIPFDLFLYKSDENGGLLLVPRFGEFSPLKNLE-GSHFDNVETFTCGIPR 423

Query: 433 LHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGK-VLQTPLLLE 484
                +E  G  +    +GN +      + Y  E     +  K  L+  ++  
Sbjct: 424 -IPLILELEGLTI----SGNVLFGRNVTLKYASENTSLCIPNKSFLENVIITG 471

Length = 472

>gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

 Score =  215 bits (549), Expect = 6e-67
 Identities = 87/312 (27%), Positives = 131/312 (41%), Gaps = 54/312 (17%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPW 168
           VAV++LAGG GTRLG D PK   ++GLPSG+   Q+  EKI  L    +E     C +P 
Sbjct: 1   VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTL----QEIDLYSCKIPE 56

Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDG 228
            +M S+ T   T+ YFE+        ++VI F Q  +P  +         + +    P G
Sbjct: 57  QLMNSKYTHEKTQCYFEKIN---QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCG 113

Query: 229 HGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEK 288
           HG +  AL  +G L+ +  +G ++IH   VDN+LVKV DP F+G  ++       KVV K
Sbjct: 114 HGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPK 173

Query: 289 ITPGESLGVLCNVD-GKHKIVEYSELGNC---SVFETQDQT--GRLKFNLGSICNHYFSL 342
               ES G       G+ +++EY ++       +   Q         F L +  N    L
Sbjct: 174 TRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFL 233

Query: 343 ECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWE 402
              +  V                                        D     +++V   
Sbjct: 234 VEFKDRVD---------------------------------------DIIEFTDDIVGVM 254

Query: 403 VTR-DEFSPLKN 413
           V R +EF+P+KN
Sbjct: 255 VHRAEEFAPVKN 266

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Length = 266

>gnl|CDD|201928 pfam01704, UDPGP, UTP--glucose-1-phosphate uridylyltransferase

 Score =  186 bits (474), Expect = 5e-54
 Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 35/335 (10%)

Query: 89  VDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAE 148
           VD   L    +          +AV+ L GG GT +G   PK M  +   +G +   +  +
Sbjct: 34  VDYDQLKAPEDEDNAGSLLNKLAVLKLNGGLGTSMGCKGPKSMIEVR--NGNTFLDLIVQ 91

Query: 149 KIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
           +I++L     +++    +P  +M S  TD  T+++ E+  Y G     +  F+Q   P  
Sbjct: 92  QIEQL----NKRYNCD-VPLLLMNSFNTDEETKKFLEK--YSGSK-VEIKTFQQSRYPRI 143

Query: 209 SLSGEILLETRDRVARSPD-----GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263
                + +    + + +PD     GHG L+ +L  +G+LDT+  +G ++I V  VDN L 
Sbjct: 144 YKDSLLPVPK-KKDSMAPDEWYPPGHGDLFRSLYNSGLLDTLLAQGKEYIFVSNVDN-LG 201

Query: 264 KVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQD 323
              D   L + + +G   G++V EK       G L + DGK +++EY+++    V E + 
Sbjct: 202 ATVDLNILNHIINKGIEYGMEVTEKTNADVKGGTLISYDGKLRLLEYAQVPKEHVDEFKS 261

Query: 324 QTGRLKFNLGSICNHYFSLECLQRMVKEDA-ALKFHMARKKIPCLDEQGISQRPNKPNGI 382
            +    FN  +I   + +L+ ++R+V+ +   L   + +KKI             K NGI
Sbjct: 262 ASKFKIFNTNNI---WINLKAVKRLVESNELNLDIIVNQKKI-----------TYKNNGI 307

Query: 383 KLEKF---LFDAFPLCENLVAWEVTRDEFSPLKNS 414
           K+ +       A    +N     V RD F P+K +
Sbjct: 308 KVLQLETAAGAAIRQFKNSFGINVPRDRFLPVKTT 342

This family consists of UTP--glucose-1-phosphate uridylyltransferases, EC:2.7.7.9. Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyzes the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type. In Dictyostelium (slime mold) mutants in this enzyme abort the development cycle. Also within the family is UDP-N-acetylglucosamine or AGX1 and two hypothetical proteins from Borrelia burgdorferi the lyme disease spirochaete. Length = 417

>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

 Score = 84.8 bits (210), Expect = 3e-18
 Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 18/217 (8%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLP----SGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
              +++AGG G RLG    K    IGLP    +  +  Q     I    E +K+      
Sbjct: 1   AVFVLVAGGLGERLGYSGIK----IGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKME- 55

Query: 166 LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLS-GEILLETRDR--V 222
           +P+ IMTS+ T   T +  E N YFGL+   V   KQ  + C   +   + L+  +   +
Sbjct: 56  IPFVIMTSDDTHSKTLKLLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSI 115

Query: 223 ARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCG 282
              P GHG ++  L  +G+L      G K +  +   N L     P  LG    +     
Sbjct: 116 LTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKAIPAVLGVSATKSLDMN 175

Query: 283 VKVVEKITPGESLGVLC---NVDGKHKI--VEYSELG 314
              V +  P E++G LC     +GK     VEY++L 
Sbjct: 176 SLTVPRK-PKEAIGALCKLTKNNGKSMTINVEYNQLD 211

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be further metabolized to Glc-1-P. This can be carried out either by the UGPase in the reverse direction or by the dual substrate PPase itself operating in the reverse direction. According to the latter possibility, the three-step pathway of Gal-1-P to Glc-1-P could be carried out by a single PPase, functioning sequentially in reverse directions separated by the epimerase reaction. Length = 315

>gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase

 Score = 83.2 bits (206), Expect = 6e-17
 Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 21/197 (10%)

Query: 96  KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYN---IGLPS----GKSLFQIQAE 148
           +  E GL+    G+ A +++AGG G RLG       Y+   + LP+    G    Q+  E
Sbjct: 117 ELEEAGLREA--GNAAFVLVAGGLGERLG-------YSGIKVALPTETATGTCYLQLYIE 167

Query: 149 KIDKLIEIAKEKFGSGC--LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMP 206
            I  L E AK++       +P  IMTS+ T   T +  ERN YFG+DP  V   KQ  + 
Sbjct: 168 SILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVA 227

Query: 207 CFS-LSGEILLETRDR--VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263
           C       + L+  D   +   P GHG ++  L ++G+LD   + G K +  +   N LV
Sbjct: 228 CLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLV 287

Query: 264 KVGDPTFLGYCVEQGAH 280
               P  LG    +G  
Sbjct: 288 FKAIPAALGVSATKGFD 304

Length = 615

>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 16 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
          ++ E GLK I+ G VAV++LAGGQGTRLG D P
Sbjct: 2  EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGP 34

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323

>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 51/319 (15%)

Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFI 170
            V+ L GG GT +G   PK +  I +  GK+   +  ++I+ L     + +G   +P  +
Sbjct: 5   VVLKLNGGLGTSMGCTGPKSL--IEVRDGKTFLDLTVQQIEHL----NKTYGVD-VPLVL 57

Query: 171 MTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPD--- 227
           M S  TD  T++  ++     +D   +  F Q   P       I  ET   V    D   
Sbjct: 58  MNSFNTDEDTKKILKKYAGVNVD---IHTFNQSRYP------RISKETLLPVPSWADSPD 108

Query: 228 ------GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
                 GHG ++ +L  +G+LDT+  +G +++ V  +DN L    D   L + V+  A  
Sbjct: 109 EEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGATVDLRILNHMVDNKAEY 167

Query: 282 GVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFS 341
            ++V +K       G L   +GK +++E +++    V E +      KF + +  N + +
Sbjct: 168 IMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIK---KFKIFNTNNLWVN 224

Query: 342 LECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNK------PNGIKLEKFLFDAFPLC 395
           L+ ++R+V+E+A             LD + I    N        N I+LE  +  A    
Sbjct: 225 LKAVKRVVEENA-------------LDLEII---VNPKTVDGGLNVIQLETAVGAAIKNF 268

Query: 396 ENLVAWEVTRDEFSPLKNS 414
           +N +   V R  F P+K +
Sbjct: 269 DNALGVNVPRSRFLPVKTT 287

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. Length = 300

>gnl|CDD|178092 PLN02474, PLN02474, UTP--glucose-1-phosphate uridylyltransferase

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 72/309 (23%), Positives = 138/309 (44%), Gaps = 34/309 (11%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
           + V+ L GG GT +G   PK +  I + +G +   +    I   IE   +K+G   +P  
Sbjct: 80  LVVLKLNGGLGTTMGCTGPKSV--IEVRNGLTFLDL----IVIQIENLNKKYGCN-VPLL 132

Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARS---P 226
           +M S  T   T++  E+     ++   +  F Q   P       +   ++ +  +    P
Sbjct: 133 LMNSFNTHDDTQKIVEKYTNSNIE---IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYP 189

Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
            GHG ++ +L  +G LD + ++G +++ +   DN L  + D   L + ++      ++V 
Sbjct: 190 PGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEVT 248

Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346
            K       G L + +GK +++E +++ +  V E +      KF + +  N + +L+ ++
Sbjct: 249 PKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE---KFKIFNTNNLWVNLKAIK 305

Query: 347 RMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIK---LEKFLFDAFPLCENLVAWEV 403
           R+V+ D ALK  +    IP          P + +G+K   LE     A    +N +   V
Sbjct: 306 RLVEAD-ALKMEI----IP---------NPKEVDGVKVLQLETAAGAAIRFFDNAIGINV 351

Query: 404 TRDEFSPLK 412
            R  F P+K
Sbjct: 352 PRSRFLPVK 360

Length = 469

>gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine pyrophosphorylase

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 3/48 (6%)

Query: 4   SGVNTVDASTLG---KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
           + V+TV+  T     ++ ++GLK IS G +AV++L+GGQGTRLG+  P
Sbjct: 88  NSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDP 135

Length = 493

>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 10  DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
                 + +E GL++I +G+VAV++LAGG GTRLG+D P
Sbjct: 87  KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKP 125

Length = 482

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
           VA I+LA G G+R+GAD PK    +G   GK + +      +    ID+++
Sbjct: 1   VAAIILAAGSGSRMGADIPKQFLELG---GKPVLEHTLEAFLAHPAIDEIV 48

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 3   LSGVNTVDASTLGKYRELGLKL--ISRGDVAVIVLAGGQGTRLGADYP 48
           +   N  D     K    G  L  I  G +AV+ LAGGQGTRLG D P
Sbjct: 77  IRPPNPDDVVDYEKKILEGWGLLKIKLGKLAVLKLAGGQGTRLGCDGP 124

Length = 472

>gnl|CDD|215387 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 107 RGDVAVIVLAGGQGTRLGADYPK 129
              V+VI+LAGG G R+GA+ PK
Sbjct: 22  EKSVSVILLAGGVGKRMGANMPK 44

Length = 252

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKI 150
            ++LAGG+ +R+G D  K +  +G   GK L +   +++
Sbjct: 1   GVILAGGRSSRMGGD--KALLPLG---GKPLLERVLDRL 34

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
           +  ++LAGG+  R+G D  K +  +G   GK L +   E++  L++
Sbjct: 1   ITGVILAGGKSRRMGGD--KALLELG---GKPLLEHVLERLKPLVD 41

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	484
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	100.0
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	100.0
KOG2388|consensus	477		100.0
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	100.0
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	100.0
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	100.0
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	100.0
PLN02830	615	UDP-sugar pyrophosphorylase	100.0
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	100.0
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	100.0
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	100.0
KOG2638|consensus	498		100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.76
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.38
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.36
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.33
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.31
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.3
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	99.28
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.27
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.27
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.23
PRK10122	297	GalU regulator GalF; Provisional	99.23
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.23
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.22
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.22
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.21
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.2
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.2
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.17
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.15
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.14
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.14
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.13
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.13
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.12
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.11
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.09
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.07
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.07
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.07
KOG1322|consensus	371		99.04
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	99.04
KOG1460|consensus	407		99.03
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.03
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.02
KOG2388|consensus	477		99.02
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.02
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.0
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.0
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	98.97
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	98.97
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	98.93
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	98.92
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	98.92
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	98.9
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	98.88
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	98.84
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.79
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	98.78
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	98.77
PLN02830	615	UDP-sugar pyrophosphorylase	98.76
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.76
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.7
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	98.65
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.64
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	98.63
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	98.63
PLN02917	293	CMP-KDO synthetase	98.59
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	98.47
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.42
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	98.42
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	98.39
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	98.37
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	98.33
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	98.32
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	98.32
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	98.26
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	98.25
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	98.23
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	98.22
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	98.18
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	98.09
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	98.07
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	98.03
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	98.01
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	97.99
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	97.89
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	97.89
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	97.86
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	97.83
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	97.82
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	97.77
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.77
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	97.76
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.73
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	97.71
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	97.66
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	97.6
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	97.6
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	97.57
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	97.54
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	97.53
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	97.51
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	97.47
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.25
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	97.23
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	97.22
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	96.76
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	96.58
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	96.15
COG2068	199	Uncharacterized MobA-related protein [General func	95.64
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	93.65
PF14134	513	DUF4301: Domain of unknown function (DUF4301)	92.49
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	92.01
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	90.28
KOG1462|consensus	433		88.15
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	86.11
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	84.85
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	84.16
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	84.05
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	83.92
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	83.66
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	82.56
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	82.04
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	81.98
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	81.4
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	81.16
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	80.02

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=100.00  E-value=5.6e-108  Score=862.19  Aligned_cols=404  Identities=41%  Similarity=0.750  Sum_probs=377.2

Q ss_pred             ccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHH
Q psy10030         70 VQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK  149 (484)
Q Consensus        70 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~  149 (484)
                      ..++.++|+|.....++.+.+.++..+|+++|+++|++||||||+||||||||||+++||||++|++|+++||||++++|
T Consensus        77 ~~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~  156 (493)
T PLN02435         77 LPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAER  156 (493)
T ss_pred             CchhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHH
Confidence            46678999888777777666667788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhC----C-ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCccee
Q psy10030        150 IDKLIEIAKEKFG----S-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVAR  224 (484)
Q Consensus       150 i~~l~~l~~~~~g----~-~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~  224 (484)
                      |+++|+++.+++|    . +.|||+||||+.||++|++||++|+|||++++||+||+|+++||++.+|+++++++++++|
T Consensus       157 I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~  236 (493)
T PLN02435        157 ILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAK  236 (493)
T ss_pred             HHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCccccc
Confidence            9999999876553    1 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEE--EC
Q psy10030        225 SPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN--VD  302 (484)
Q Consensus       225 ~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~--~~  302 (484)
                      +|+||||+|.+|.++|+|++|+++|++|+||+|+||+|++++||.||||++.+++++++|||+|++|+|++|++|+  .+
T Consensus       237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~  316 (493)
T PLN02435        237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG  316 (493)
T ss_pred             CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998  58


Q ss_pred             CeEEEEEeccCCcccccccccCC-CcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCc
Q psy10030        303 GKHKIVEYSELGNCSVFETQDQT-GRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPN  380 (484)
Q Consensus       303 g~~~vvEyse~~~e~~~~~~~~~-g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn  380 (484)
                      |+++||||+|++++ +++.++++ |++.|++||||||||+++||+++++. ...||||+|.|||||+|.        +||
T Consensus       317 g~~~vvEYsEl~~~-~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~--------~~n  387 (493)
T PLN02435        317 GPLTVVEYSELDQA-MASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHG--------YTM  387 (493)
T ss_pred             CCEEEEEeccCCHH-HHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCC--------Ccc
Confidence            99999999999999 88887765 99999999999999999999999764 456999999999999982        579


Q ss_pred             cchhhhhhhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC--CCeeEEE
Q psy10030        381 GIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADET--GNTVCEI  457 (484)
Q Consensus       381 ~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~--~~~~iei  457 (484)
                      |||||+||||+|++++++.+++|+|+ |||||||++|. +.|||+|||++|+++|++||+++|+.++ ++.  ....|||
T Consensus       388 giK~E~FiFDvf~~a~~~~~~eV~R~~EFaPlKN~~g~-~~Dsp~tar~~l~~~~~~wl~~aG~~~~-~~~~~~~~~vEi  465 (493)
T PLN02435        388 GLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGS-NFDTPESARLLVLRLHTRWVVAAGGFLT-HSVPLYATGVEV  465 (493)
T ss_pred             eEEeeeeeecchhhcCceEEEEEchhhccCcccCCCCC-CCCCHHHHHHHHHHHHHHHHHHcCCEec-CCccccCCcEEe
Confidence            99999999999999999999999999 99999999986 6799999999999999999999999773 221  1247999


Q ss_pred             ccceeeecCCccccccCcccCCCcccC
Q psy10030        458 APRVSYEGEGLEERVKGKVLQTPLLLE  484 (484)
Q Consensus       458 sp~vsy~gE~l~~~~~~~~~~~p~~~~  484 (484)
                      ||++||+||||+++++|++|+.|.+|+
T Consensus       466 sP~~sY~gE~L~~~~~~~~~~~~~~~~  492 (493)
T PLN02435        466 SPLCSYAGENLEAICRGRTFHAPCEIS  492 (493)
T ss_pred             CCceeeCCCCchhhcCCCeecCceeec
Confidence            999999999999888999999999885

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=100.00  E-value=4.6e-100  Score=804.39  Aligned_cols=399  Identities=38%  Similarity=0.667  Sum_probs=365.4

Q ss_pred             cccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030         73 SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus        73 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ..++|+|.....+..+ ..+++.+|+++|+++|++||||+|+||||+|||||++.||+|+||++++++||||+++++|++
T Consensus        71 ~~~~p~~~~~~~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~  149 (482)
T PTZ00339         71 CNIEPPNNNTFIDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRR  149 (482)
T ss_pred             cccCCCCccccccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHH
Confidence            4588998877666655 467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC---ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCcccccc-CCcccccCCCcceeccCC
Q psy10030        153 LIEIAKEKFGS---GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSL-SGEILLETRDRVARSPDG  228 (484)
Q Consensus       153 l~~l~~~~~g~---~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~-~g~~~l~~~~~i~~~P~G  228 (484)
                      +++++.+++|.   +.|||+||||++||+.|++||++|+|||+++++|+||+|+++||++. +|+++++++++++|+|+|
T Consensus       150 l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~G  229 (482)
T PTZ00339        150 LEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGG  229 (482)
T ss_pred             HhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCC
Confidence            99888655541   67999999999999999999999999999999999999999999985 599999999999999999


Q ss_pred             CchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCC-ceEEEEEEccCCCcccceEEEECCeEEE
Q psy10030        229 HGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGA-HCGVKVVEKITPGESLGVLCNVDGKHKI  307 (484)
Q Consensus       229 ~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~-~~~~~vv~k~~~~e~~G~l~~~~g~~~v  307 (484)
                      |||+|.+|.++|+|++|.++|++|+||+|+||+|++++||.||||++++++ +++.+|+ |+.|+|++|++|+.+|++++
T Consensus       230 nGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~~g~~~v  308 (482)
T PTZ00339        230 NGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLKDYEWQV  308 (482)
T ss_pred             CcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEeCCcccE
Confidence            999999999999999999999999999999999999999999999999999 9999999 66799999999999999999


Q ss_pred             EEeccCCcccccccccC-CCcccccccceeeeeecHHHHHHHhhc--cccchhhhhccCCCccCCCCCeecCCCCccchh
Q psy10030        308 VEYSELGNCSVFETQDQ-TGRLKFNLGSICNHYFSLECLQRMVKE--DAALKFHMARKKIPCLDEQGISQRPNKPNGIKL  384 (484)
Q Consensus       308 vEyse~~~e~~~~~~~~-~g~~~f~~~Ni~~~~~~l~~l~~~~~~--~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~kl  384 (484)
                      |||+|++++ +++.++. +|.+.|++||||||||+++||+++++.  ...||+|+|.|||||+|...     ++|||+||
T Consensus       309 vEYsEi~~~-~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-----~~png~K~  382 (482)
T PTZ00339        309 VEYTEINER-ILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-----DKTMGIKL  382 (482)
T ss_pred             EEEeccChh-hhhcccccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-----CCcceeee
Confidence            999999999 8887776 499999999999999999999998753  45699999999999999322     57999999


Q ss_pred             hhhhhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC--CCeeEEEccce
Q psy10030        385 EKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADET--GNTVCEIAPRV  461 (484)
Q Consensus       385 E~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~--~~~~ieisp~v  461 (484)
                      |+||||+|++++++.+++|+|+ |||||||++|. +.|||+|||++|+++|++||+++|+++ .++.  ....|||||++
T Consensus       383 E~FiFDvf~~~~~~~~~ev~R~~eFsPlKNa~g~-~~d~p~tar~~l~~~~~~wl~~ag~~~-~~~~~~~~~~~Eisp~~  460 (482)
T PTZ00339        383 EAFIFDIFRYAKNVLILEVDREDEFAPIKNADGA-AADTILNAQKLLLSLHTRWLEAALETV-AGNPREGLNLCEISPLV  460 (482)
T ss_pred             hhhhhhHHHhccccceeeechhhccccccCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCee-eccccCCCceEEecCcc
Confidence            9999999999999999999999 99999999997 789999999999999999999999988 3321  23479999999


Q ss_pred             eeecCCccccccCcccCC-Ccc
Q psy10030        462 SYEGEGLEERVKGKVLQT-PLL  482 (484)
Q Consensus       462 sy~gE~l~~~~~~~~~~~-p~~  482 (484)
                      ||+||||+ .++|+++.. |++
T Consensus       461 sy~ge~l~-~~~~~~~~~~~~~  481 (482)
T PTZ00339        461 SYGGEGLF-QYPGKKILGLPEI  481 (482)
T ss_pred             eeCCCCcc-cccCceecCCCCc
Confidence            99999998 668987774 554

>KOG2388|consensus

Probab=100.00  E-value=6.6e-96  Score=751.67  Aligned_cols=448  Identities=44%  Similarity=0.758  Sum_probs=407.0

Q ss_pred             HHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccccccCCCCcccCCCCCChh
Q psy10030         13 TLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDAS   92 (484)
Q Consensus        13 ~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~~p~~~~~~~~~~~~~~~   92 (484)
                      .+.+|.+.+.+.=..      ++  =|-.+|+.+++.|.+.+.....      .+   .-.+++|.|+...........+
T Consensus        18 l~~~w~eL~~~~~~~------l~--~~ie~l~l~~~~~~~~~~a~~~------~~---~~~~~~p~p~~~~~~~~~~~~~   80 (477)
T KOG2388|consen   18 LFTQWPELSEADKES------LL--DQIEVLNLSRIHGLQRISANED------SK---PVGEIRPVPESKSWPLKERGLD   80 (477)
T ss_pred             HhhhchhcCHHHHHH------HH--HHHHhhcccccchhhhcChhhc------cC---cccccCCCCccccceecccCch
Confidence            345676655443321      11  3556778899999997433211      11   2246788877666666555666


Q ss_pred             hHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCC-ccccEEEE
Q psy10030         93 TLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIM  171 (484)
Q Consensus        93 ~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~-~~ipl~iM  171 (484)
                      +...|+..|+.+|++|++|+++||||||||||++.|||++++|+++++|+||+++++|+++|++++...+. +.||||||
T Consensus        81 d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~Im  160 (477)
T KOG2388|consen   81 DVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIM  160 (477)
T ss_pred             hhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEe
Confidence            67779999999999999999999999999999999999999999999999999999999999988765544 89999999


Q ss_pred             eCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCe
Q psy10030        172 TSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK  251 (484)
Q Consensus       172 tS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~  251 (484)
                      ||..|++.|.+||+.|+|||++++||+||+|+++||++.+|+++++.+.+++++|+||||+|.++.++  |++|.++|+.
T Consensus       161 tS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~  238 (477)
T KOG2388|consen  161 TSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIF  238 (477)
T ss_pred             cCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998  9999999999


Q ss_pred             EEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEEC-CeEEEEEeccCCcccccccccCC-Cccc
Q psy10030        252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD-GKHKIVEYSELGNCSVFETQDQT-GRLK  329 (484)
Q Consensus       252 ~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~-g~~~vvEyse~~~e~~~~~~~~~-g~~~  329 (484)
                      |++|+||||+|++++||.|+||++.+++++++++|+|.+|.|.+|++|..+ |++++|||||++.+ +++.+..+ |++.
T Consensus       239 ~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~G~~~vvEYsEi~~~-~a~~~~~d~g~l~  317 (477)
T KOG2388|consen  239 YDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQGTPLVVEYSELDAE-LAKAKAPDGGRLL  317 (477)
T ss_pred             EEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCCCceeEEEecccCHH-HHhhcccccCccc
Confidence            999999999999999999999999999999999999999999999999998 99999999999999 99999888 8999


Q ss_pred             ccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-c
Q psy10030        330 FNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-E  407 (484)
Q Consensus       330 f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~  407 (484)
                      |++||||||+|+++||+++... ...||+|++.||+||+|++|++++|++|||+|+|+||||+|+++++|++++|+|+ +
T Consensus       318 ~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~e  397 (477)
T KOG2388|consen  318 FNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEE  397 (477)
T ss_pred             cCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhh
Confidence            9999999999999999999887 6779999999999999999999999999999999999999999999999999999 9


Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccceeeecCCccccccCcccCCCcccC
Q psy10030        408 FSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE  484 (484)
Q Consensus       408 FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~vsy~gE~l~~~~~~~~~~~p~~~~  484 (484)
                      |||+||..++ +.|||+||+.+++++|++|+.++|++| .+.  +.+|||||+|||+||+||++..|++|++|+|++
T Consensus       398 fSPlKng~~~-~~D~p~T~~~~~l~~h~~wi~~~g~~f-~~~--~~~~evs~~vsy~GE~lEs~~~g~~F~s~~~~~  470 (477)
T KOG2388|consen  398 FSPLKNGGKS-STDNPSTARIALLRLHIRWIEKAGGIF-SDA--EAVVEVSPLVSYAGENLESVPSGFEFNSPLYLD  470 (477)
T ss_pred             cCccccCCCC-CCCChhHHHHHHHHhhhhehhccCcEE-ecC--cceEEecceeeecccchhhccccceecCceeEe
Confidence            9999999988 799999999999999999999999999 453  368999999999999999988899999999985

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=100.00  E-value=2e-87  Score=681.90  Aligned_cols=319  Identities=54%  Similarity=0.963  Sum_probs=307.8

Q ss_pred             HHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCC-ccccEEEEeCC
Q psy10030         96 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSE  174 (484)
Q Consensus        96 ~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~-~~ipl~iMtS~  174 (484)
                      +|+++|+++|++|++|+|+||||+|||||++.||+|+||++++++||||+++++|++++.++++++|+ +.|||+||||+
T Consensus         2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~   81 (323)
T cd04193           2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE   81 (323)
T ss_pred             hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence            68999999999999999999999999999999999999999999999999999999999888776666 88999999999


Q ss_pred             CCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEE
Q psy10030        175 LTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIH  254 (484)
Q Consensus       175 ~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~  254 (484)
                      +||+.|++||++++|||+++++|++|.|+++||++.+|+++++++++++|+|+||||+|.+|.++|+|++|+++|++|++
T Consensus        82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~  161 (323)
T cd04193          82 ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIH  161 (323)
T ss_pred             hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccc
Q psy10030        255 VYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGS  334 (484)
Q Consensus       255 v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~N  334 (484)
                      |+|+||+|++++||.||||+++++++++++||+|+.|+|++|++|+.||++++|||+|++++ .++..+.+|++.|+++|
T Consensus       162 v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~-~~~~~~~~g~l~f~~~n  240 (323)
T cd04193         162 VYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDE-LAEKRDADGELQYNAGN  240 (323)
T ss_pred             EEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHH-HHhccCcCCcEecccch
Confidence            99999999999999999999999999999999999999999999999999999999999999 77777888999999999


Q ss_pred             eeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-cccccc
Q psy10030        335 ICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLK  412 (484)
Q Consensus       335 i~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvK  412 (484)
                      ||+|+|+++||+++++. ...||+|+|+|++||+|.++..++|++|||+|||+||||+|++++++++++|+|+ ||+|||
T Consensus       241 i~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~~~F~PvK  320 (323)
T cd04193         241 IANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDREEEFSPLK  320 (323)
T ss_pred             HhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChhhccccCc
Confidence            99999999999999876 3469999999999999988889999999999999999999999999999999999 999999


Q ss_pred             CCC
Q psy10030        413 NSP  415 (484)
Q Consensus       413 n~~  415 (484)
                      |++
T Consensus       321 n~~  323 (323)
T cd04193         321 NAD  323 (323)
T ss_pred             CCC
Confidence            984

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=100.00  E-value=2.9e-81  Score=656.16  Aligned_cols=366  Identities=21%  Similarity=0.326  Sum_probs=318.4

Q ss_pred             cccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHH
Q psy10030         67 LSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQ  146 (484)
Q Consensus        67 L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~  146 (484)
                      ...++|+.|+|++.+.+.++.++.......  ....+++  +|+|||+||||||||||+++||||+++  ++++||||++
T Consensus        41 ~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~L--~k~avlkLnGGlGTrmG~~~PKs~i~v--~~~~sfldl~  114 (469)
T PLN02474         41 AQHIEWSKIQTPTDEVVVPYDKLAPVPEDP--EETKKLL--DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLI  114 (469)
T ss_pred             CCeecHHHccCCchhhCcChhhccccccch--hHHHHHH--hcEEEEEecCCcccccCCCCCceeEEc--CCCCcHHHHH
Confidence            455899999999888877776664321111  1122345  699999999999999999999999987  8999999999


Q ss_pred             HHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCC---cce
Q psy10030        147 AEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRD---RVA  223 (484)
Q Consensus       147 ~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~---~i~  223 (484)
                      ++||++++    ++|| ++|||+||||+.||++|++||++|++|+   .+|++|+|+++||++.+|+++++.+.   ..+
T Consensus       115 ~~qi~~l~----~~~g-~~vPl~iMtS~~T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~  186 (469)
T PLN02474        115 VIQIENLN----KKYG-CNVPLLLMNSFNTHDDTQKIVEKYTNSN---IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDG  186 (469)
T ss_pred             HHHHHHHH----HHcC-CCceEEEECCCchhHHHHHHHHHcCCCc---cceEEEecCceeeEecCCCCcccccCCCCcce
Confidence            99999998    5788 9999999999999999999999999875   67999999999999999999998665   566


Q ss_pred             eccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECC
Q psy10030        224 RSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDG  303 (484)
Q Consensus       224 ~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g  303 (484)
                      |+|+||||+|.+|++||+|++|+++|++|+||+|+|| |++++||.|+||++.++++++|+|++|+.+++|+|++|+++|
T Consensus       187 ~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dg  265 (469)
T PLN02474        187 WYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEG  265 (469)
T ss_pred             eeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEECC
Confidence            9999999999999999999999999999999999999 589999999999999999999999999999999999999999


Q ss_pred             eEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhccccchhhh--hccCCCccCCCCCeecCCCCcc
Q psy10030        304 KHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHM--ARKKIPCLDEQGISQRPNKPNG  381 (484)
Q Consensus       304 ~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~~~~Lp~~~--~~K~ip~~d~~g~~~~p~~pn~  381 (484)
                      +++++||+|+|+++..++.   |.++|+++|||||||+++||+++++. ..||+|+  ++|++     +|..       -
T Consensus       266 k~~lvEysqvp~e~~~~f~---~~~kf~~fNtnn~w~~L~~l~~~~~~-~~l~~~~I~n~k~~-----~g~k-------v  329 (469)
T PLN02474        266 KVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAIKRLVEA-DALKMEIIPNPKEV-----DGVK-------V  329 (469)
T ss_pred             EEEEEEEecCCHHHHHhhc---ccccceeeeeeeEEEEHHHHHHHhhc-CCCCceeecCCCCC-----CCee-------E
Confidence            9999999999999544443   66899999999999999999999864 4466654  44433     2322       3


Q ss_pred             chhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccce
Q psy10030        382 IKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRV  461 (484)
Q Consensus       382 ~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~v  461 (484)
                      +|||++|||+|++++++.+++|+|+||+||||++      ++.++|+|+|.++++|+..+|++. .+.  ...||++|.+
T Consensus       330 ~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~------dll~~rsdly~l~~~~l~~~~~~~-~~~--~p~IeL~~~f  400 (469)
T PLN02474        330 LQLETAAGAAIRFFDNAIGINVPRSRFLPVKATS------DLLLVQSDLYTLVDGFVIRNKART-NPS--NPSIELGPEF  400 (469)
T ss_pred             EEeHHHHHHHHHhCCCceEEEEchhhccCCCCCC------CHHHHHHHHHHhccCeEEecCccc-CCC--CCcEEECccc
Confidence            6889999999999999999999999999999995      899999999999999999999875 221  2469999999


Q ss_pred             eeecCCcccccc
Q psy10030        462 SYEGEGLEERVK  473 (484)
Q Consensus       462 sy~gE~l~~~~~  473 (484)
                      ++-+|.++ .++
T Consensus       401 ~~v~~f~~-rf~  411 (469)
T PLN02474        401 KKVANFLS-RFK  411 (469)
T ss_pred             ccHHhHHH-hcC
Confidence            99999887 444

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=100.00  E-value=3.8e-81  Score=626.49  Aligned_cols=294  Identities=24%  Similarity=0.364  Sum_probs=274.0

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      +|+|||+||||||||||+++||||+||  ++++||||++++||++++    ++|| +.|||+||||+.||++|++||++|
T Consensus         2 ~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~----~~~~-~~iPl~iMtS~~T~~~T~~~l~~~   74 (300)
T cd00897           2 NKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLN----KTYG-VDVPLVLMNSFNTDEDTKKILKKY   74 (300)
T ss_pred             CcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHH----HHcC-CCceEEEECCCcchHHHHHHHHHc
Confidence            699999999999999999999999999  799999999999999999    5678 999999999999999999999997


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCccccc---CCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLE---TRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~---~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      ++   ++++|++|+|+++||++.+|+++++   ++++++|+|+||||+|.+|.+||+|++|+++|++|++|+|+|| |++
T Consensus        75 ~~---~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN-L~a  150 (300)
T cd00897          75 AG---VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGA  150 (300)
T ss_pred             CC---CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc-ccc
Confidence            75   6789999999999999999999987   7789999999999999999999999999999999999999999 589


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC  344 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~  344 (484)
                      ++||.|||||+.+++++++|||+|+.|+|++|++|+++|++++|||+|+|+++..++.   |...|+++|||||||+++|
T Consensus       151 ~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~n~~~~l~~  227 (300)
T cd00897         151 TVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTNNLWVNLKA  227 (300)
T ss_pred             cCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhc---CcccceEEEEeEEEEEHHH
Confidence            9999999999999999999999999999999999999999999999999999444444   4468999999999999999


Q ss_pred             HHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCH
Q psy10030        345 LQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNP  423 (484)
Q Consensus       345 l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~  423 (484)
                      |+++++. ...||+|+|.|+||          |. ||++|||+||||+|++++++.+++|+|+||+||||++      ++
T Consensus       228 L~~~~~~~~~~lp~h~~~K~v~----------p~-~~~~qlE~~i~da~~~~~~~~~~eV~R~rF~PvKn~~------dl  290 (300)
T cd00897         228 VKRVVEENALDLEIIVNPKTVD----------GG-LNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTS------DL  290 (300)
T ss_pred             HHHHHHhccCCCCeeecccccC----------CC-CCEEEeHhHhhhHHHhCCCcEEEEEChhhcCCCCChH------HH
Confidence            9999865 45799999999885          32 8999999999999999999999999999999999995      77


Q ss_pred             HHHHHHHHH
Q psy10030        424 VTCCQAVHA  432 (484)
Q Consensus       424 ~ta~~~l~~  432 (484)
                      ...|+|+|.
T Consensus       291 l~~~sd~y~  299 (300)
T cd00897         291 LLVRSDLYS  299 (300)
T ss_pred             Hhhhhcccc
Confidence            888888774

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=100.00  E-value=1.4e-79  Score=617.12  Aligned_cols=295  Identities=26%  Similarity=0.356  Sum_probs=266.9

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      +|+|+||||||||||+++||||+||++++++||||++++||+++|+++.+.++ +.|||+||||+.||++|++||++|+|
T Consensus         1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~-~~IPl~IMTS~~Th~~T~~~fe~n~y   79 (315)
T cd06424           1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEK-MEIPFVIMTSDDTHSKTLKLLEENNY   79 (315)
T ss_pred             CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCC-CceeEEEECCCchhHHHHHHHHHCCc
Confidence            48999999999999999999999999999999999999999999998866666 99999999999999999999999999


Q ss_pred             CCCCCCcEEEEEcCCccccc-cCCcc--cccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        190 FGLDPAHVIFFKQRSMPCFS-LSGEI--LLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~-~~g~~--~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      ||++++||+||+|+++||++ .+|++  .++++++++|+|+||||+|.+|+++|+|++|+++|++|++|+|+||+|++++
T Consensus        80 FGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~a  159 (315)
T cd06424          80 FGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKA  159 (315)
T ss_pred             cCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhcc
Confidence            99999999999999999997 88998  5788999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCceEEEEEEccCCCcccceEEE---ECCeEEE--EEeccCCcccccccccCCC----c--ccccccce
Q psy10030        267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN---VDGKHKI--VEYSELGNCSVFETQDQTG----R--LKFNLGSI  335 (484)
Q Consensus       267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~---~~g~~~v--vEyse~~~e~~~~~~~~~g----~--~~f~~~Ni  335 (484)
                      ||.|+|+++.++++++++||+| .|.|++|++|+   .||++++  |||||++++ +++..+.+|    .  ..+.+|||
T Consensus       160 dP~fiG~~~~~~~d~~~k~v~~-~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~-~~~~~~~~g~~~~~~~~s~f~gNi  237 (315)
T cd06424         160 IPAVLGVSATKSLDMNSLTVPR-KPKEAIGALCKLTKNNGKSMTINVEYNQLDPL-LRASGKDDGDVDDKTGFSPFPGNI  237 (315)
T ss_pred             ChhhEEEEecCCCceEeEEEeC-CCCCceeeEEEEecCCCceEEEEEEeecCCHH-HHhcCCCCCCcccccccccCCCee
Confidence            9999999999999999999986 48999999998   5789987  999999998 877665543    1  34459999


Q ss_pred             eeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcc---cccCCceEEEEEecc-cccc
Q psy10030        336 CNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDA---FPLCENLVAWEVTRD-EFSP  410 (484)
Q Consensus       336 ~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~---~~~~~~~~~~~V~R~-~FsP  410 (484)
                      |+|+|+++++.+.++. .+.+|+|+++|   |.|++...++  +|  .||||||||+   |+...++++++|+|+ +|||
T Consensus       238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~k---y~d~~~~~~~--~p--~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP  310 (315)
T cd06424         238 NQLVFSLGPYMDELEKTKGAIPEFINPK---YKDATKTAFK--SP--TRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSP  310 (315)
T ss_pred             eeEEEeHHHHHHHHhhccccCeeeecCC---cccCCCCeec--Cc--hHHHHHHHHHHHhhcccceeEEEEEchhhcccc
Confidence            9999999999998865 46677777555   9997644333  34  4999999999   555789999999999 9999


Q ss_pred             ccCC
Q psy10030        411 LKNS  414 (484)
Q Consensus       411 vKn~  414 (484)
                      |||+
T Consensus       311 ~KN~  314 (315)
T cd06424         311 VKNN  314 (315)
T ss_pred             cCCC
Confidence            9997

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PLN02830 UDP-sugar pyrophosphorylase

Probab=100.00  E-value=2.2e-78  Score=653.87  Aligned_cols=389  Identities=25%  Similarity=0.359  Sum_probs=333.0

Q ss_pred             CcccccCCCCCCccccccHHHHhhhhhhccc-----ccccccccc-CCCCcccCCCCCChhhHHHHHHhchhcccCCCEE
Q psy10030         38 GQGTRLGADYPNRIESIKIQVYIGHGYQELS-----GVQLSEVQV-FPPNCLSGVNTVDASTLGKYRELGLKLISRGDVA  111 (484)
Q Consensus        38 gqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~-----ai~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkva  111 (484)
                      -|-.+++..||+|+.     .|+.++...+.     .++|+.++| +|.....++   ++.+..+|++.|+++|  ||+|
T Consensus        61 ~qL~~ld~~y~g~l~-----~~~~~~~~~l~~s~~~~~~~~~i~P~vp~~~~~~~---~~~~~~~~~~~Gl~~l--~kva  130 (615)
T PLN02830         61 EQVARLDESYPGGLA-----AYVSNAKELLADSKEGVNPFEGWTPSVPEGEVLEY---GSEEFVELEEAGLREA--GNAA  130 (615)
T ss_pred             HHHHhccccccchHH-----HHHHHHHHHHhhcccCCCchhhcccCCCccccccc---cchhhhHHHHHHHHHh--CcEE
Confidence            366788899998876     33443332222     356778888 465445444   3466788999999998  6999


Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCC--ccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS--GCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~--~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      ||+||||||||||+++||+++|+++++++||||++++||+++|+++.++++.  +.|||+||||++||++|++||++|+|
T Consensus       131 vllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~  210 (615)
T PLN02830        131 FVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDY  210 (615)
T ss_pred             EEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCc
Confidence            9999999999999999999999999999999999999999999998654432  89999999999999999999999999


Q ss_pred             CCCCCCcEEEEEcCCcccccc-CCcccccC--CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSL-SGEILLET--RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~-~g~~~l~~--~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      ||++++||+||+|+++||++. +|++++++  +++++|+|+||||+|.+|+++|+|++|+++|++|+||+|+||+|++.+
T Consensus       211 FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~A  290 (615)
T PLN02830        211 FGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKA  290 (615)
T ss_pred             cCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcc
Confidence            999999999999999999985 48999987  789999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCceEEEEEEccCCCcccceEEE---ECCe--EEEEEeccCCcccccccccCCCccc----cc--ccce
Q psy10030        267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN---VDGK--HKIVEYSELGNCSVFETQDQTGRLK----FN--LGSI  335 (484)
Q Consensus       267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~---~~g~--~~vvEyse~~~e~~~~~~~~~g~~~----f~--~~Ni  335 (484)
                      ||.||||++.++++|+++||+|+ |.|++|++|+   .||+  +++|||+|++++ ++..++++|++.    |+  +|||
T Consensus       291 dp~flG~~~~~~~d~~~kvv~K~-~~E~vGvi~~~~~~dG~~l~~vVEYse~~~l-l~~a~~p~g~l~~~~~~s~FPgNt  368 (615)
T PLN02830        291 IPAALGVSATKGFDMNSLAVPRK-AKEAIGAIAKLTHKDGREMVINVEYNQLDPL-LRATGHPDGDVNDETGYSPFPGNI  368 (615)
T ss_pred             cHHHhHHHHhcCCceEEEEEECC-CCcccceEEEEecCCCCeeeEEEeecccCHH-HHhccCCCcccccccccccCCCCc
Confidence            99999999999999999999994 8999999998   4777  689999999998 877777665533    33  4699


Q ss_pred             eeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccC---CceEEEEEecc-cccc
Q psy10030        336 CNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLC---ENLVAWEVTRD-EFSP  410 (484)
Q Consensus       336 ~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~---~~~~~~~V~R~-~FsP  410 (484)
                      ||+|++|+.++++++. ...||.++|+|   |.|.+++.+|  .+  .++||+|+|+-..+   .++++..++|+ ||+|
T Consensus       369 N~L~v~L~a~~~~l~~~~~~lp~ivNpK---~~d~~~~v~q--~~--trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~P  441 (615)
T PLN02830        369 NQLILKLGPYVKELAKTGGVIEEFVNPK---YKDATKTAFK--SP--TRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSP  441 (615)
T ss_pred             eeeEeeHHHHHHHHHhCCCccceeccCc---ccCCCCceee--cc--hHHHHHHHHHhhhcCcccccCceecCchheecc
Confidence            9999999999998876 67899999999   6687788887  34  59999999975433   23444444555 9999


Q ss_pred             ccCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHcCcEE
Q psy10030        411 LKNSPLD--------SASDNPVTCCQAVHALHARWIETAGGVV  445 (484)
Q Consensus       411 vKn~~~~--------~~~ds~~ta~~~l~~~~~~~l~~~g~~~  445 (484)
                      |||+..+        .+.+|+.+++.|+|+.++.+|+++|+.+
T Consensus       442 VKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~  484 (615)
T PLN02830        442 VKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADV  484 (615)
T ss_pred             ccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCcc
Confidence            9999331        1579999999999999999999999987

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=100.00  E-value=1.3e-78  Score=634.48  Aligned_cols=339  Identities=39%  Similarity=0.623  Sum_probs=284.4

Q ss_pred             hhhhhc--cccccccccccCCCCcccCCCCCChhhHHHH-HHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCC
Q psy10030         61 GHGYQE--LSGVQLSEVQVFPPNCLSGVNTVDASTLGKY-RELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLP  137 (484)
Q Consensus        61 ~~~~~~--L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~  137 (484)
                      .+|+.+  -..++|+.+.|++++.+.+     .+++..+ +..|+.++++||+|||+||||||||||+++|||++||  +
T Consensus        10 ~~yl~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v--~   82 (420)
T PF01704_consen   10 RRYLSESKSHQIDWDKIMPPPPEEVVD-----YESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPV--R   82 (420)
T ss_dssp             HHHHHCCCCCS--GGGEEE-GTGCEEE-----HHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEE--E
T ss_pred             HHHHHhcccCCcccccCCCCChhhcCC-----hhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCcceec--C
Confidence            566654  4568999988876665553     3445442 1789999999999999999999999999999999999  8


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCccccc
Q psy10030        138 SGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLE  217 (484)
Q Consensus       138 ~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~  217 (484)
                      +++||||++++|+++++    ++|| ++|||+||||+.||++|++||++  |||++.+ |++|+|+++||++.+|+++++
T Consensus        83 ~~~t~ldl~~~qi~~l~----~~~~-~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~d~~~~l~  154 (420)
T PF01704_consen   83 EGKTFLDLIVEQIEALN----KKYG-VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAIDADGKLPLE  154 (420)
T ss_dssp             TTEEHHHHHHHHHHHHH----HHHT-TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEETTTTCBEE
T ss_pred             CcccHHHHHHHHHHHHh----cccc-ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEeCCCccccc
Confidence            99999999999999988    5678 99999999999999999999999  7999877 999999999999999999998


Q ss_pred             CCC-----cceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCC
Q psy10030        218 TRD-----RVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPG  292 (484)
Q Consensus       218 ~~~-----~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~  292 (484)
                      .+.     ..+|+|+||||+|.+|.+||+|++|+++|++|+||+|+|| |++++||.||||+++++++++++||+|+.|+
T Consensus       155 ~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~d  233 (420)
T PF01704_consen  155 SKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEVVPKTSPD  233 (420)
T ss_dssp             ETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEEEE-CSTT
T ss_pred             cccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhheeeeecCCCC
Confidence            754     2469999999999999999999999999999999999999 7999999999999999999999999999999


Q ss_pred             cccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCC
Q psy10030        293 ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQG  371 (484)
Q Consensus       293 e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g  371 (484)
                      |++|++|+.+|++++|||+|+++++.+++++.++   |..+|+||+||+++||+++++. ...||+|+|+|+|||.|   
T Consensus       234 ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~---~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d---  307 (420)
T PF01704_consen  234 EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKG---FLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVD---  307 (420)
T ss_dssp             TSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTT---SBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEEC---
T ss_pred             CceeEEEEeCCccEEEEeccCCHHHHHhhhcccc---ceEEEeceeeEEHHHHHHHHHhccccCccEEcchhccccc---
Confidence            9999999999999999999999998888888766   4566888889999999999876 67899999999999998   


Q ss_pred             CeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHH
Q psy10030        372 ISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHA  432 (484)
Q Consensus       372 ~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~  432 (484)
                           ..++++|||++|++.+.++++..+++|+|+||+||||++      ++...++++|.
T Consensus       308 -----~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~------dLl~~~Sd~y~  357 (420)
T PF01704_consen  308 -----NGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTS------DLLLVRSDLYD  357 (420)
T ss_dssp             -----TEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHH------HHHHHHSTTEE
T ss_pred             -----CCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccC------cceeeccceec
Confidence                 246778999999999999999999999999999999996      44444544443

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-72  Score=580.64  Aligned_cols=388  Identities=35%  Similarity=0.478  Sum_probs=340.9

Q ss_pred             ccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHH
Q psy10030         70 VQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK  149 (484)
Q Consensus        70 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~  149 (484)
                      .+|+.+.|+.++.+..+.+...    +++  |+..+..||+|||+||||||||||+++|||+++|+  +|+||||++++|
T Consensus        72 ~~~~ki~~~~~d~~~~~~~~~~----~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~q  143 (472)
T COG4284          72 QEWDKIRPPNPDDVVDYEKKIL----EGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQ  143 (472)
T ss_pred             eeecccCCCChhhhccchhhcc----chh--hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHH
Confidence            5777888876666766543221    122  78888899999999999999999999999999994  799999999999


Q ss_pred             HHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCcc-ccccCCcccccCCCc-ceeccC
Q psy10030        150 IDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMP-CFSLSGEILLETRDR-VARSPD  227 (484)
Q Consensus       150 i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P-~~~~~g~~~l~~~~~-i~~~P~  227 (484)
                      |+.++    .+|+ ++|||+|||| .|++.|..||+.++|||+++.+|+||+|+.+| +++.+|+++....++ ++|+|+
T Consensus       144 Ik~ln----~~~~-~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~  217 (472)
T COG4284         144 IKYLN----RQYN-VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPP  217 (472)
T ss_pred             HHHHH----HHhC-CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCC
Confidence            99998    5677 9999999999 99999999999999999999999999999999 577889988877777 999999


Q ss_pred             CCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEE
Q psy10030        228 GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKI  307 (484)
Q Consensus       228 G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~v  307 (484)
                      ||||+|.+|.+||++++|.++|++|++|+|||| |++++||.++|+++.++++++||++.|+.|+|+||+++..+|++++
T Consensus       218 GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~~rl  296 (472)
T COG4284         218 GNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTYDGKLRL  296 (472)
T ss_pred             CCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEeCCceEE
Confidence            999999999999999999999999999999999 7999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCcccccccccCCCcccccccc-eeeeeecHHHHHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhh
Q psy10030        308 VEYSELGNCSVFETQDQTGRLKFNLGS-ICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEK  386 (484)
Q Consensus       308 vEyse~~~e~~~~~~~~~g~~~f~~~N-i~~~~~~l~~l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~  386 (484)
                      +||+|++.+ .++....+|.+.+..+| |++|++++++|.+..  ...||+|.|.|++|+.|...+.-+|..||+++||.
T Consensus       297 lEysev~~~-~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~--~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~  373 (472)
T COG4284         297 LEYSEVPNE-HREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAA--YLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFEN  373 (472)
T ss_pred             EEEecCChh-HhhhhccccceeeeccccceeehhHHHHHHhhh--ccCCcchhhhcccCccccceeeccccccchhhccc
Confidence            999999998 55544566767766666 888888888887776  47899999999999998556677778899999996


Q ss_pred             -hh-hcccccC--CceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccce
Q psy10030        387 -FL-FDAFPLC--ENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRV  461 (484)
Q Consensus       387 -~i-~D~~~~~--~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~v  461 (484)
                       || ||+|.+-  ++++++.|||. ||+|+||-.+. ..++++++..++-. +..|++..|.++ .+   ....|.++..
T Consensus       374 ~FI~fDlF~~~s~~~~~~~~vpR~~~f~Plkn~~~~-~~~~~~~~~~~~~~-~~~~~e~~~~~i-s~---nv~~~~~~~l  447 (472)
T COG4284         374 EFIPFDLFLYKSDENGGLLLVPRFGEFSPLKNLEGS-HFDNVETFTCGIPR-IPLILELEGLTI-SG---NVLFGRNVTL  447 (472)
T ss_pred             cccceeeeEEEecCCCceEeccccCCCCchhhccCC-CCCcHHhhhccccc-ccchhhhcccee-cC---ceEeeeccee
Confidence             99 9999988  89999999999 89999999977 66899999888644 445999999988 33   4689999999


Q ss_pred             eeecCCccccccCcccCCCc
Q psy10030        462 SYEGEGLEERVKGKVLQTPL  481 (484)
Q Consensus       462 sy~gE~l~~~~~~~~~~~p~  481 (484)
                      +|+||++.-.++++.|-.-.
T Consensus       448 k~~~e~~~l~~~~~s~~e~~  467 (472)
T COG4284         448 KYASENTSLCIPNKSFLENV  467 (472)
T ss_pred             eecCCCceEeccCCeeeeee
Confidence            99999998547888665533

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=100.00  E-value=4.9e-65  Score=505.86  Aligned_cols=258  Identities=33%  Similarity=0.462  Sum_probs=242.0

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      +|+|+||||+|||||++.||+|+||++++|+||||+++++|++++.++.  ++ +.||++||||++||+.|++||++|+ 
T Consensus         1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~--~~-~~Ip~~imts~~t~~~t~~~l~~~~-   76 (266)
T cd04180           1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL--YS-CKIPEQLMNSKYTHEKTQCYFEKIN-   76 (266)
T ss_pred             CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh--cC-CCCCEEEEcCchhHHHHHHHHHHcC-
Confidence            5899999999999999999999999999999999999999999986553  24 7799999999999999999999987 


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT  269 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~  269 (484)
                        ++++++++|+|+++||++.+|...++++++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|++++||.
T Consensus        77 --~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~  154 (266)
T cd04180          77 --QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL  154 (266)
T ss_pred             --CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH
Confidence              567899999999999999999988888899999999999999999999999999999999999999999999888999


Q ss_pred             HHHHHHHcCCceEEEEEEccCCCcccceEEEEC-CeEEEEEeccCCcccccccc------cCCCcccccccceeeeeecH
Q psy10030        270 FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD-GKHKIVEYSELGNCSVFETQ------DQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       270 ~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~-g~~~vvEyse~~~e~~~~~~------~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      ++|+++.++++++++|++|+.++|++|++|..+ |++++|||+|++++ .++.+      +.+|.+.|+++|||||||+|
T Consensus       155 ~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~~g~~~~vEyse~~~~-~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l  233 (266)
T cd04180         155 FIGIAIQNRKAINQKVVPKTRNEESGGYRIANINGRVQLLEYDQIKKL-LKQKMVNNQIPKDIDDAPFFLFNTNNLINFL  233 (266)
T ss_pred             HHHHHHHcCCCEEEEEEECCCCCCeEEEEEEecCCCEEEEEeccCCHH-HHhccccccCcCCCCceeeccceEEEEEEEH
Confidence            999999999999999999999999999999988 99999999999998 65543      34678999999999999999


Q ss_pred             HHHHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccccC
Q psy10030        343 ECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKN  413 (484)
Q Consensus       343 ~~l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn  413 (484)
                      +||+++++                                       |+|++++++.+++|+|+ ||+||||
T Consensus       234 ~~l~~~~~---------------------------------------d~~~~~~~~~~~~v~r~~~F~PvKn  266 (266)
T cd04180         234 VEFKDRVD---------------------------------------DIIEFTDDIVGVMVHRAEEFAPVKN  266 (266)
T ss_pred             HHHHHHHH---------------------------------------HHHhccCceEEEEeCchhccccCCC
Confidence            99999872                                       88999999999999999 9999998

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>KOG2638|consensus

Probab=100.00  E-value=1.1e-65  Score=515.57  Aligned_cols=339  Identities=22%  Similarity=0.344  Sum_probs=306.5

Q ss_pred             hhhhhcc-ccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCC
Q psy10030         61 GHGYQEL-SGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG  139 (484)
Q Consensus        61 ~~~~~~L-~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~  139 (484)
                      .||+.+- +.++|+.|+|+|++.+.++.++...      +.+-..+.  |+||++|+||+||.|||.+||++++|  ++|
T Consensus        62 ~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~------~~~~~~L~--KLavlKLNGGlGttmGc~gPKS~ieV--R~g  131 (498)
T KOG2638|consen   62 SRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV------ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKSVIEV--RDG  131 (498)
T ss_pred             HHHHhccCCccchhhccCCChhhccccccccch------hhHHHhhh--heEEEEecCCcCCccccCCCceeEEE--cCC
Confidence            6777654 7799999999999999988776654      33335554  99999999999999999999999888  999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccC-
Q psy10030        140 KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET-  218 (484)
Q Consensus       140 ~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~-  218 (484)
                      .|||++.++||+.|+    ++|+ +++|+++|+|++|+++|.+++++|..+.   .+|++|.|+++|+++.|..++++. 
T Consensus       132 ~tFLDL~V~QIe~LN----~~Y~-~dVPlvLMNSfnTdedT~kil~ky~~~k---v~i~TF~QS~~PRi~~etlLPv~~~  203 (498)
T KOG2638|consen  132 LTFLDLTVRQIENLN----KTYN-VDVPLVLMNSFNTDEDTQKILKKYAGSK---VDIKTFNQSKYPRIDKETLLPVPKL  203 (498)
T ss_pred             CchhHHHHHHHHHHH----hhcC-CCCCEEEecccccchHHHHHHHHhcCCc---eeEEEeccccCCccccccccCCCcc
Confidence            999999999999988    7898 9999999999999999999999987653   669999999999999999988864 


Q ss_pred             ---CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCccc
Q psy10030        219 ---RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESL  295 (484)
Q Consensus       219 ---~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~  295 (484)
                         ...-+|+|+|||++|.+|+.||+||+|+++|+||+||+|+||+ ++++|..+|.+++.++.++.|+|++|+.++-|+
T Consensus       204 ~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNL-GAtvDL~ILn~~i~~~~ey~MEvTdKT~aDvKg  282 (498)
T KOG2638|consen  204 EADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNL-GATVDLNILNHVINNNIEYLMEVTDKTRADVKG  282 (498)
T ss_pred             cCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccc-cceeeHHHHHHHhcCCCceEEEecccchhhccc
Confidence               2457999999999999999999999999999999999999998 689999999999999999999999999999999


Q ss_pred             ceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCee
Q psy10030        296 GVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQ  374 (484)
Q Consensus       296 G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~  374 (484)
                      |+++.++|+.+++||+|+|++|..++++.   .+|+++||||+|++|++++++++. ...|++++|+|++.+    +   
T Consensus       283 GtLi~y~G~lrlLEiaQVP~ehv~eFkS~---kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~kti~~----~---  352 (498)
T KOG2638|consen  283 GTLIQYEGKLRLLEIAQVPKEHVDEFKSI---KKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPKTIDR----G---  352 (498)
T ss_pred             ceEEeecCEEEEEEeccCChhHhhhhccc---eeEEEeccCCeEEehHHHHHHhhcCcccceeecChhhccC----C---
Confidence            99999999999999999999999999887   589999999999999999999987 778999999998854    2   


Q ss_pred             cCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10030        375 RPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWI  438 (484)
Q Consensus       375 ~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l  438 (484)
                          -+.+|||+.+++++++|++..++.|+|+||.|||+++      ++...+++||.+...-|
T Consensus       353 ----~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~s------DLlLv~S~Ly~ld~Gsl  406 (498)
T KOG2638|consen  353 ----IEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCS------DLLLVMSNLYDLDNGSL  406 (498)
T ss_pred             ----ceEEEEhhhhhHHHHhCCCceeeeccccccccccccc------cceeeecceeeccCCeE
Confidence                2457999999999999999999999999999999996      77888888888654433

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=3.5e-17  Score=167.72  Aligned_cols=252  Identities=19%  Similarity=0.199  Sum_probs=198.8

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      .+.+|+||.|+||||.++.||.+.+|   +|||++++.++....|.           ..-++..-+|..+.+++.+.+..
T Consensus         2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~-----------~~~i~vVvGh~ae~V~~~~~~~~   67 (460)
T COG1207           2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALG-----------PDDIVVVVGHGAEQVREALAERD   67 (460)
T ss_pred             CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcC-----------cceEEEEEcCCHHHHHHHhcccc
Confidence            47899999999999999999999999   99999999999887654           33334444999999999997642


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCe-EEEEEeCCCCccccCC
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK-HIHVYCVDNILVKVGD  267 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~-~i~v~~vDN~l~~~~D  267 (484)
                             ++.|+.|..                     |.|+|.+..+...      .+..+.+ .++|.++|.+|....-
T Consensus        68 -------~v~~v~Q~e---------------------qlGTgHAV~~a~~------~l~~~~~g~vLVl~GD~PLit~~T  113 (460)
T COG1207          68 -------DVEFVLQEE---------------------QLGTGHAVLQALP------ALADDYDGDVLVLYGDVPLITAET  113 (460)
T ss_pred             -------CceEEEecc---------------------cCChHHHHHhhhh------hhhcCCCCcEEEEeCCcccCCHHH
Confidence                   477888876                     7999999887643      3445555 8999999999964322


Q ss_pred             HH-HHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCe-EEEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030        268 PT-FLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGK-HKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC  344 (484)
Q Consensus       268 p~-~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~-~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~  344 (484)
                      .. ++.++...++.++..++.-.+|.. +|.|++. +|+ .++||..+.+++ .+         ..+.-|+..++|+-++
T Consensus       114 L~~L~~~~~~~~~~~tvLt~~~~dP~G-YGRIvr~~~g~V~~IVE~KDA~~e-ek---------~I~eiNtGiy~f~~~~  182 (460)
T COG1207         114 LEELLAAHPAHGAAATVLTAELDDPTG-YGRIVRDGNGEVTAIVEEKDASEE-EK---------QIKEINTGIYAFDGAA  182 (460)
T ss_pred             HHHHHHhhhhcCCceEEEEEEcCCCCC-cceEEEcCCCcEEEEEEcCCCCHH-Hh---------cCcEEeeeEEEEcHHH
Confidence            22 677777788999999999998874 6888877 555 679999999988 43         3346789999999999


Q ss_pred             HHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCC----ceEEEEEecc-ccccccCCCCCCC
Q psy10030        345 LQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCE----NLVAWEVTRD-EFSPLKNSPLDSA  419 (484)
Q Consensus       345 l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~----~~~~~~V~R~-~FsPvKn~~~~~~  419 (484)
                      |.+.+..   |.                      .|-.|=|.++.|++.++.    ++..+.++.. |+..|+|..    
T Consensus       183 L~~~L~~---l~----------------------nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~----  233 (460)
T COG1207         183 LLRALPK---LS----------------------NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV----  233 (460)
T ss_pred             HHHHHHH---hc----------------------cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH----
Confidence            9887622   21                      112488999999998883    6888888877 999998884    


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC
Q psy10030        420 SDNPVTCCQAVHALHARWIETAGGVVVADET  450 (484)
Q Consensus       420 ~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~  450 (484)
                        .++.++..|.++.++.++.+|+.+..|++
T Consensus       234 --qLa~~e~~~q~r~~~~~m~~GVtl~dP~t  262 (460)
T COG1207         234 --QLAEAERIMQRRIAEKLMLAGVTLIDPAT  262 (460)
T ss_pred             --HHHHHHHHHHHHHHHHHHHcCcEEeCCCe
Confidence              78888999999888889999999955554

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.38  E-value=1.6e-11  Score=124.09  Aligned_cols=180  Identities=19%  Similarity=0.223  Sum_probs=125.6

Q ss_pred             CEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEE-EeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFI-MTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~i-MtS~~t~e~t~~~l  184 (484)
                      .+.+|+||||.||||..   +.||+|+||   .+||++++.++.+..        .|   +.-++ ++..+..+.++++|
T Consensus         3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~--------aG---i~~I~ii~~~~~~~~~~~~l   68 (292)
T PRK15480          3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML--------AG---IRDILIISTPQDTPRFQQLL   68 (292)
T ss_pred             ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEecCCchHHHHHHH
Confidence            47799999999999976   889999999   899999999888853        34   55554 56666677889999


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .+...||++   +.+..|.                     .|.|+|+.+....+      +.  +-+.+++.++||++..
T Consensus        69 ~~g~~~g~~---i~y~~q~---------------------~~~Gta~Al~~a~~------~i--~~~~~~lv~gD~i~~~  116 (292)
T PRK15480         69 GDGSQWGLN---LQYKVQP---------------------SPDGLAQAFIIGEE------FI--GGDDCALVLGDNIFYG  116 (292)
T ss_pred             cCccccCce---eEEEECC---------------------CCCCHHHHHHHHHH------Hh--CCCCEEEEECCeeeec
Confidence            887778864   4444443                     38899999876432      23  2233677789998743


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ..-..++..|..++.++++-+++..+| ++.|++... +|+  ++++.|-|.. -          .-+..|++.++|+-+
T Consensus       117 ~~l~~ll~~~~~~~~~~tv~~~~v~~p-~~yGvv~~d~~g~--v~~i~EKP~~-p----------~s~~a~~GiY~~~~~  182 (292)
T PRK15480        117 HDLPKLMEAAVNKESGATVFAYHVNDP-ERYGVVEFDQNGT--AISLEEKPLQ-P----------KSNYAVTGLYFYDND  182 (292)
T ss_pred             cCHHHHHHHHHhCCCCeEEEEEEcCCc-ccCcEEEECCCCc--EEEEEECCCC-C----------CCCEEEEEEEEEChH
Confidence            333457888877788887777766655 588998765 454  3444443322 0          113578999999987


Q ss_pred             HHHHH
Q psy10030        344 CLQRM  348 (484)
Q Consensus       344 ~l~~~  348 (484)
                      .++.+
T Consensus       183 v~~~~  187 (292)
T PRK15480        183 VVEMA  187 (292)
T ss_pred             HHHHH
Confidence            65543

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.36  E-value=2.7e-11  Score=122.81  Aligned_cols=185  Identities=17%  Similarity=0.194  Sum_probs=122.9

Q ss_pred             CEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      .+.+|+||||.||||..   ..||+|+||   .|+|+++++++.+..        .|   +.-+++...+..+.+.+||.
T Consensus         3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~--------~G---i~~ivivv~~~~~~i~~~~~   68 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA--------AG---IKEIVLVTHASKNAVENHFD   68 (297)
T ss_pred             ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEecCChHHHHHHHh
Confidence            47899999999999984   789999999   899999999998863        35   77778888889999999996


Q ss_pred             HcCC----------------------CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHH
Q psy10030        186 RNGY----------------------FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILD  243 (484)
Q Consensus       186 ~~~~----------------------fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~  243 (484)
                      .+..                      +++   ++.+                     ..+..|.|+||.......     
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~---------------------~~q~~~lGtg~Av~~a~~-----  119 (297)
T TIGR01105        69 TSYELESLLEQRVKRQLLAEVQSICPPGV---TIMN---------------------VRQAQPLGLGHSILCARP-----  119 (297)
T ss_pred             chHHHHHHHHHhcchhhhhhhhhcCCCCc---eEEE---------------------eeCCCcCchHHHHHHHHH-----
Confidence            5210                      111   1222                     234458999998776543     


Q ss_pred             HHHHcCCeEEEEEeCCCCcccc------CC-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-----CCe-EEEEEe
Q psy10030        244 TMHTRGIKHIHVYCVDNILVKV------GD-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-----DGK-HKIVEY  310 (484)
Q Consensus       244 ~l~~~G~~~i~v~~vDN~l~~~------~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-----~g~-~~vvEy  310 (484)
                       +.  +-+.++|.++|++.-..      .| -.++.+|.+++..+ +-+++......++|++...     +|+ .+|+|+
T Consensus       120 -~l--~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~  195 (297)
T TIGR01105       120 -VV--GDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEF  195 (297)
T ss_pred             -Hh--CCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcCCCCccceEEEecccccCCCCeeeEeEE
Confidence             22  33557888899874110      11 14666666666655 3333432224688999862     355 367888


Q ss_pred             ccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030        311 SELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM  348 (484)
Q Consensus       311 se~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~  348 (484)
                      .|-|.. -.+.       .-+..|++.++|+-+.+..+
T Consensus       196 ~EKP~~-~~~~-------~s~~~~~GiYi~~~~i~~~l  225 (297)
T TIGR01105       196 IEKPDQ-PQTL-------DSDLMAVGRYVLSADIWAEL  225 (297)
T ss_pred             EECCCC-cccC-------CcCEEEEEEEEECHHHHHHH
Confidence            776532 1111       12467899999998866654

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3.2e-11  Score=125.35  Aligned_cols=179  Identities=25%  Similarity=0.350  Sum_probs=133.2

Q ss_pred             EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +-+|+||||.||||..   +.||+|+||   .|+|+++++++.+.+        +|   +--++++..+..+.+.++|++
T Consensus         2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~--------~G---v~eivi~~~y~~~~i~~~~~d   67 (358)
T COG1208           2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA--------AG---VEEIVLVVGYLGEQIEEYFGD   67 (358)
T ss_pred             ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH--------CC---CcEEEEEeccchHHHHHHHhc
Confidence            5689999999999875   899999999   799999999998853        56   888999999999999999998


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      ...+|++   |.                     +..+..|.|+||.++...+.        .+.+-+++.|+|++.  ..
T Consensus        68 ~~~~~~~---I~---------------------y~~e~~~lGTag~l~~a~~~--------l~~~~f~v~~GDv~~--~~  113 (358)
T COG1208          68 GEGLGVR---IT---------------------YVVEKEPLGTAGALKNALDL--------LGGDDFLVLNGDVLT--DL  113 (358)
T ss_pred             ccccCCc---eE---------------------EEecCCcCccHHHHHHHHHh--------cCCCcEEEEECCeee--cc
Confidence            7666654   43                     33444589999999876532        233889999999985  34


Q ss_pred             C-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        267 D-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       267 D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      | -.++.+|..+++..++..++...+ ...|++...++.-.++++.+-|.. .  ..      .=...|+..++|+-+.+
T Consensus       114 dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~-~--~~------~~~~in~Giyi~~~~v~  183 (358)
T COG1208         114 DLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGP-E--EP------PSNLINAGIYIFDPEVF  183 (358)
T ss_pred             CHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecCCCceEEEEEecCCC-C--CC------CCceEEeEEEEECHHHh
Confidence            4 347888888877777777766666 578887766333556666666531 0  00      01356788888887766


Q ss_pred             H
Q psy10030        346 Q  346 (484)
Q Consensus       346 ~  346 (484)
                      +
T Consensus       184 ~  184 (358)
T COG1208         184 D  184 (358)
T ss_pred             h
Confidence            5

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.31  E-value=5.5e-11  Score=119.97  Aligned_cols=176  Identities=19%  Similarity=0.218  Sum_probs=122.0

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEE-EEeCCCCchHHHHHHHHc
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF-IMTSELTDRPTREYFERN  187 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~-iMtS~~t~e~t~~~l~~~  187 (484)
                      +|+||||.||||..   ..||+|+||   .++|++++.++.+..        .|   |.-+ |++..+..+.++++|.+.
T Consensus         2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~--------aG---i~~I~iv~~~~~~~~~~~~lg~g   67 (286)
T TIGR01207         2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML--------AG---IRDILIISTPQDTPRFQQLLGDG   67 (286)
T ss_pred             EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH--------CC---CCEEEEEecCCcHHHHHHHhccc
Confidence            58999999999975   899999999   899999999888853        34   5555 466667778889999877


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                      ..||++   +.+..|.                     .|.|+|+.+.....      +.  +.+.++++++||++....-
T Consensus        68 ~~~g~~---i~~~~q~---------------------~~~Gta~al~~a~~------~l--~~~~~~li~gD~i~~~~~l  115 (286)
T TIGR01207        68 SQWGVN---LSYAVQP---------------------SPDGLAQAFIIGED------FI--GGDPSALVLGDNIFYGHDL  115 (286)
T ss_pred             cccCce---EEEEEcc---------------------CCCCHHHHHHHHHH------Hh--CCCCEEEEECCEeccccCH
Confidence            677764   4444442                     47899998876442      22  2345667789998643222


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      ..++-.|.+.+.++++-+.+..+| +++|++... +|+  |+++.|-|.. -          .-+..|++.++|+-+.++
T Consensus       116 ~~ll~~~~~~~~~~ti~~~~v~~p-~~yGvv~~d~~g~--V~~i~EKp~~-~----------~s~~~~~GiYi~~~~i~~  181 (286)
T TIGR01207       116 SDLLKRAAARESGATVFAYQVSDP-ERYGVVEFDSNGR--AISIEEKPAQ-P----------KSNYAVTGLYFYDNRVVE  181 (286)
T ss_pred             HHHHHHHHhcCCCcEEEEEEccCH-HHCceEEECCCCe--EEEEEECCCC-C----------CCCEEEEEEEEEchHHHH
Confidence            456777777788888777776655 578998764 443  4444443322 0          113578899999977644


Q ss_pred             H
Q psy10030        347 R  347 (484)
Q Consensus       347 ~  347 (484)
                      .
T Consensus       182 ~  182 (286)
T TIGR01207       182 I  182 (286)
T ss_pred             H
Confidence            3

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.30  E-value=6.9e-10  Score=117.46  Aligned_cols=242  Identities=20%  Similarity=0.228  Sum_probs=151.4

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.||||+...||.|+|+   .|+|++++.++.++..        .   -..+|++ .+..+.+.+++.+. 
T Consensus         2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~--------~---~~i~Ivv-~~~~~~i~~~~~~~-   65 (430)
T PRK14359          2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI--------S---DDVHVVL-HHQKERIKEAVLEY-   65 (430)
T ss_pred             CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc--------C---CcEEEEE-CCCHHHHHHHHHhc-
Confidence            35689999999999999999999999   8999999999988641        1   2344444 56688888888763 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       ++    .+.+..|+.                   ..+.|+|+.+..+.          ...+++++.+.|+++   .++
T Consensus        66 -~~----~v~~~~~~~-------------------~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~---~~~  108 (430)
T PRK14359         66 -FP----GVIFHTQDL-------------------ENYPGTGGALMGIE----------PKHERVLILNGDMPL---VEK  108 (430)
T ss_pred             -CC----ceEEEEecC-------------------ccCCCcHHHHhhcc----------cCCCeEEEEECCccC---CCH
Confidence             21    244444431                   23568888776521          125789999999986   366


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR  347 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~  347 (484)
                      ..+..+.+.++++++.+++..+|. ..|++...+|+. .++|......+ .         ......|++.++|+-+++++
T Consensus       109 ~~l~~l~~~~~~~~v~~~~~~~~~-~~g~v~~d~g~v~~i~e~~~~~~~-~---------~~~~~~~~Giyif~~~~l~~  177 (430)
T PRK14359        109 DELEKLLENDADIVMSVFHLADPK-GYGRVVIENGQVKKIVEQKDANEE-E---------LKIKSVNAGVYLFDRKLLEE  177 (430)
T ss_pred             HHHHHHHhCCCCEEEEEEEcCCCc-cCcEEEEcCCeEEEEEECCCCCcc-c---------ccceEEEeEEEEEEHHHHHH
Confidence            777777777888877777766554 478776556643 34444322221 0         11235688899999999887


Q ss_pred             HhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccC----CceEEEEEeccccccccCCCCCCCCCCH
Q psy10030        348 MVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLC----ENLVAWEVTRDEFSPLKNSPLDSASDNP  423 (484)
Q Consensus       348 ~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~----~~~~~~~V~R~~FsPvKn~~~~~~~ds~  423 (484)
                      +.+.   +....                      .+-|.++.|+++..    .++.+++++...+.-+.+.      ++.
T Consensus       178 ~~~~---~~~~~----------------------~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~------~dl  226 (430)
T PRK14359        178 YLPL---LKNQN----------------------AQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSK------FEL  226 (430)
T ss_pred             HHHh---cCccc----------------------ccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCH------HHH
Confidence            6532   10000                      01122333443322    2466666654345444222      466


Q ss_pred             HHHHHHHHHHHHHHHHHcCcEE
Q psy10030        424 VTCCQAVHALHARWIETAGGVV  445 (484)
Q Consensus       424 ~ta~~~l~~~~~~~l~~~g~~~  445 (484)
                      ..|+..|....++-+...|+.+
T Consensus       227 ~~a~~~l~~~~~~~~~~~g~~~  248 (430)
T PRK14359        227 AKAEEIMQERIKKNAMKQGVIM  248 (430)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEE
Confidence            7777666655555555677665

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.28  E-value=2e-12  Score=137.76  Aligned_cols=92  Identities=27%  Similarity=0.383  Sum_probs=69.1

Q ss_pred             CCCCCChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccc----------
Q psy10030          5 GVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSE----------   74 (484)
Q Consensus         5 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~----------   74 (484)
                      +....+++...+|++.|+++|++|+|||++||||||||||.++||||++|+++  .+++++++.+.+..+          
T Consensus        92 ~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglp--s~kslfql~~e~I~~lq~la~~~~~  169 (493)
T PLN02435         92 TVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLP--SGKSLFQLQAERILCVQRLAAQASS  169 (493)
T ss_pred             chhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCC--CCCcHHHHHHHHHHHHHHHHHhhcc
Confidence            33334557778999999999999999999999999999999999999999997  567666665533322          


Q ss_pred             -----cccCCCCcccCCCCCChhhHHHHHH
Q psy10030         75 -----VQVFPPNCLSGVNTVDASTLGKYRE   99 (484)
Q Consensus        75 -----~~p~~~~~~~~~~~~~~~~~~~~~~   99 (484)
                           -.++|+..|.|..+ ..+...-+++
T Consensus       170 ~~~~~~~~IPl~IMTS~~T-~~~T~~ff~~  198 (493)
T PLN02435        170 EGPGRPVTIHWYIMTSPFT-DEATRKFFES  198 (493)
T ss_pred             cccCCCCceeEEEeCCcch-hHHHHHHHHh
Confidence                 23578888888764 2333344443

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.27  E-value=5.4e-10  Score=119.32  Aligned_cols=181  Identities=18%  Similarity=0.265  Sum_probs=114.7

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      .+.+|+||||.||||+.+.||.|+|+   .|+|++++.++.+..        .+   +.-+++...+..+.+.+++.+. 
T Consensus         5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~--------~~---~~~iivv~~~~~~~i~~~~~~~-   69 (456)
T PRK14356          5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP--------LF---GDNVWTVVGHRADMVRAAFPDE-   69 (456)
T ss_pred             ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh--------cC---CCcEEEEECCCHHHHHHhcccc-
Confidence            58899999999999998899999999   899999999887753        23   4445444456667776665431 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                             ++.+..|+                     .|.|+|+.+...     ++.+.+.+.++++|+++|+++.   ++
T Consensus        70 -------~~~~v~~~---------------------~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~i---~~  113 (456)
T PRK14356         70 -------DARFVLQE---------------------QQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPLV---TT  113 (456)
T ss_pred             -------CceEEEcC---------------------CCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCcccC---CH
Confidence                   12222221                     257887755543     2344444678999999999863   33


Q ss_pred             HHHHHHHH--cCCceEEEEEEccCCCcccceEEEECCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        269 TFLGYCVE--QGAHCGVKVVEKITPGESLGVLCNVDGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       269 ~~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      ..+-.+.+  .+.+.++.+.+..+|. .+|++...+|+. .++|-...++. ...   +    ..+..|++.++|+-+++
T Consensus       114 ~~i~~li~~~~~~~~~l~~~~~~~~~-~~g~v~~~~g~V~~~~ek~~~~~~-~~~---~----~~~~~~~GiY~f~~~~l  184 (456)
T PRK14356        114 DTIDDFLKEAAGADLAFMTLTLPDPG-AYGRVVRRNGHVAAIVEAKDYDEA-LHG---P----ETGEVNAGIYYLRLDAV  184 (456)
T ss_pred             HHHHHHHHHHhcCCEEEEEEEcCCCC-CceEEEEcCCeEEEEEECCCCChH-Hhh---h----hcCeEEEEEEEEEHHHH
Confidence            33333222  2666766666666554 678887656653 23443333221 000   0    11346888999999988


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      +++.
T Consensus       185 ~~ll  188 (456)
T PRK14356        185 ESLL  188 (456)
T ss_pred             HHHH
Confidence            7765

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.27  E-value=1.6e-10  Score=120.61  Aligned_cols=195  Identities=19%  Similarity=0.244  Sum_probs=127.1

Q ss_pred             CCEEEEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY  183 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~  183 (484)
                      +++.+||||||.||||+.   +.||+|+||   .|+ ++++++++.+..        .|   +--+++...+..+.++++
T Consensus         2 ~~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~--------~G---i~~i~iv~~~~~~~i~~~   67 (380)
T PRK05293          2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCAN--------SG---IDTVGVLTQYQPLELNNH   67 (380)
T ss_pred             CcEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHh--------CC---CCEEEEEecCCHHHHHHH
Confidence            478899999999999987   899999999   889 899999998853        35   656666668899999999


Q ss_pred             HHHcCCCCCCCC--cEEEEEcCCccccccCCcccccCCCcce-eccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCC
Q psy10030        184 FERNGYFGLDPA--HVIFFKQRSMPCFSLSGEILLETRDRVA-RSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDN  260 (484)
Q Consensus       184 l~~~~~fgl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~i~-~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN  260 (484)
                      |++...|+++..  .+.+ .|..              ..... ..|.|+|+.+.....     .+....-++++|+++|+
T Consensus        68 ~~~~~~~~~~~~~~~~~i-~~~~--------------~~~~~~~~~~Gta~al~~a~~-----~l~~~~~~~~lV~~gD~  127 (380)
T PRK05293         68 IGIGSPWDLDRINGGVTI-LPPY--------------SESEGGKWYKGTAHAIYQNID-----YIDQYDPEYVLILSGDH  127 (380)
T ss_pred             HhCCCcccccCCCCCEEE-eCCc--------------ccCCCCcccCCcHHHHHHHHH-----HHHhCCCCEEEEecCCE
Confidence            987766776532  1211 1100              00001 125799887765432     23222347899999999


Q ss_pred             CccccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeee
Q psy10030        261 ILVKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY  339 (484)
Q Consensus       261 ~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~  339 (484)
                      +. ...--.++..|..+++++++-+.... ....++|++...++ -+|.++.+-|.. .          .-+..|++.++
T Consensus       128 l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~-g~V~~~~eKp~~-~----------~~~~~~~Giyi  194 (380)
T PRK05293        128 IY-KMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEKPKN-P----------KSNLASMGIYI  194 (380)
T ss_pred             EE-cCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCC-CcEEEEEeCCCC-C----------CcceeeeEEEE
Confidence            74 33333467777777888765543321 12357788765422 234555554432 1          11356889999


Q ss_pred             ecHHHHHHHh
Q psy10030        340 FSLECLQRMV  349 (484)
Q Consensus       340 ~~l~~l~~~~  349 (484)
                      |+.+.|.+++
T Consensus       195 ~~~~~l~~~l  204 (380)
T PRK05293        195 FNWKRLKEYL  204 (380)
T ss_pred             EcHHHHHHHH
Confidence            9988876654

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.23  E-value=1.4e-10  Score=120.63  Aligned_cols=190  Identities=14%  Similarity=0.103  Sum_probs=121.1

Q ss_pred             CEEEEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCch-HHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDR-PTREY  183 (484)
Q Consensus       109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e-~t~~~  183 (484)
                      ++.+|+||||.||||+.   +.||+|+||   .|+ |+++++++.+.+        .|   +--+++...+.++ .+++|
T Consensus         2 ~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~--------~G---i~~I~iv~~~~~~~~I~~~   67 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVN--------AG---IRNVFIFFKNKERQSLFDH   67 (369)
T ss_pred             cEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhc--------cC---CCEEEEEeCCCcHHHHHHH
Confidence            68899999999999975   899999999   899 899999998864        45   7778888888776 99999


Q ss_pred             HHHcCCCCCCCCc---EEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCC
Q psy10030        184 FERNGYFGLDPAH---VIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDN  260 (484)
Q Consensus       184 l~~~~~fgl~~~~---v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN  260 (484)
                      |.+...||++..+   +.++.|+                    ..|.|+|+++......   +.+...+-++++|+|+|+
T Consensus        68 l~~~~~~~~~~~~~~~~~~~~~e--------------------~~~l~tg~~~a~~~a~---~~l~~~~~~~~lvlnGD~  124 (369)
T TIGR02092        68 LGSGREWDLHRKRDGLFVFPYND--------------------RDDLSEGGKRYFSQNL---EFLKRSTSEYTVVLNSHM  124 (369)
T ss_pred             HhCCCCCCcccccCcEEEEeccC--------------------CCCcccChHHHHHHHH---HHHHhCCCCEEEEECCCE
Confidence            9886667765221   1111221                    2356777765332211   222222347899999999


Q ss_pred             CccccCCHHHHHHHHHcCCceEEEEEEcc--CCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceee
Q psy10030        261 ILVKVGDPTFLGYCVEQGAHCGVKVVEKI--TPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICN  337 (484)
Q Consensus       261 ~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~--~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~  337 (484)
                      +. ...--.++.+|.++++++++-+.+..  ++....|++... +|  .+.++.+-++.      ..    . ...|+.+
T Consensus       125 l~-~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g--~v~~~~~~~~~------~~----~-~~~~~Gi  190 (369)
T TIGR02092       125 VC-NIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESG--KVKSIGQNLNP------EE----E-ENISLDI  190 (369)
T ss_pred             EE-ecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCC--CEEeccccCCC------CC----c-ceeeeeE
Confidence            64 33333578888888999877665543  344333444433 34  33332211111      00    0 1246789


Q ss_pred             eeecHHHHHHHh
Q psy10030        338 HYFSLECLQRMV  349 (484)
Q Consensus       338 ~~~~l~~l~~~~  349 (484)
                      ++|+-+.+.++.
T Consensus       191 yi~~~~~l~~~l  202 (369)
T TIGR02092       191 YIVSTDLLIELL  202 (369)
T ss_pred             EEEEHHHHHHHH
Confidence            999987665544

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK10122 GalU regulator GalF; Provisional

Probab=99.23  E-value=5.1e-10  Score=113.55  Aligned_cols=186  Identities=16%  Similarity=0.208  Sum_probs=121.7

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      ++.+||||||.||||+   ...||+|+||   .||++++++++.+..        .|   |--+++...+..+.+.+||.
T Consensus         3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~--------~G---i~~i~iv~~~~~~~i~~~~~   68 (297)
T PRK10122          3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA--------AG---IKEIVLVTHASKNAVENHFD   68 (297)
T ss_pred             ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEcCCChHHHHHHHh
Confidence            6889999999999998   4789999999   899999999998864        35   66777777889999999996


Q ss_pred             HcCCCCCC---------------------CCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHH
Q psy10030        186 RNGYFGLD---------------------PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDT  244 (484)
Q Consensus       186 ~~~~fgl~---------------------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~  244 (484)
                      . + ++++                     ..++.+..                     +..|.|+|+.+......     
T Consensus        69 ~-~-~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~---------------------q~~~lGtg~al~~a~~~-----  120 (297)
T PRK10122         69 T-S-YELESLLEQRVKRQLLAEVQSICPPGVTIMNVR---------------------QGQPLGLGHSILCARPA-----  120 (297)
T ss_pred             c-c-hhHHHHHhhcchhhhHHhhhhccCCCceEEEee---------------------cCCcCchHHHHHHHHHH-----
Confidence            3 2 2211                     01122222                     33489999988765432     


Q ss_pred             HHHcCCeEEEEEeCCCCcccc-------CC-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-----CCeE-EEEEe
Q psy10030        245 MHTRGIKHIHVYCVDNILVKV-------GD-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-----DGKH-KIVEY  310 (484)
Q Consensus       245 l~~~G~~~i~v~~vDN~l~~~-------~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-----~g~~-~vvEy  310 (484)
                       .  +-+.++|+++|++. ..       .| -.++.+|.+.++++.+- ........++|++...     +|.. +|+++
T Consensus       121 -l--~~~~fvvi~gD~l~-~~~~~~~~~~dl~~li~~h~~~~~~~~~~-~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~  195 (297)
T PRK10122        121 -I--GDNPFVVVLPDVVI-DDASADPLRYNLAAMIARFNETGRSQVLA-KRMPGDLSEYSVIQTKEPLDREGKVSRIVEF  195 (297)
T ss_pred             -c--CCCCEEEEECCeec-cCccccccchhHHHHHHHHHHhCCcEEEE-EECCCCCCCceEEEecCcccCCCCeeeEEEE
Confidence             2  23446677899974 21       12 23677777777775433 3332234578988763     4543 67777


Q ss_pred             ccCCcccccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030        311 SELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       311 se~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                      .|-|.. -.+.       .-+..|+..++|+-+.++.+.
T Consensus       196 ~EKp~~-~~~~-------~s~~~~~GiYi~~~~i~~~l~  226 (297)
T PRK10122        196 IEKPDQ-PQTL-------DSDLMAVGRYVLSADIWPELE  226 (297)
T ss_pred             EECCCC-cccC-------CccEEEEEEEEECHHHHHHHH
Confidence            665532 1111       113578899999987666553

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.23  E-value=2.7e-10  Score=111.26  Aligned_cols=177  Identities=19%  Similarity=0.211  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEE-EEeCCCCchHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF-IMTSELTDRPTREYFER  186 (484)
Q Consensus       111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~-iMtS~~t~e~t~~~l~~  186 (484)
                      .+|+||||.||||+.   ..||+++|+   .+++++++.++.+..        .|   +.-+ +++..+..+.+.+++.+
T Consensus         2 ~~iIlAaG~gtRl~plt~~~pK~llpv---~~~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~~~~~~l~~   67 (240)
T cd02538           2 KGIILAGGSGTRLYPLTKVVSKQLLPV---YDKPMIYYPLSTLML--------AG---IREILIISTPEDLPLFKELLGD   67 (240)
T ss_pred             eEEEEcCcCcccCCccccCCCceeeEE---CCEEhHHHHHHHHHH--------CC---CCEEEEEeCcchHHHHHHHHhc
Confidence            479999999999976   789999999   699999999888753        34   5444 44555556788899987


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      ...+++.   |.+-.                     ...|.|+|+.+.....      +.  +-+.++|.++|+++....
T Consensus        68 ~~~~~~~---i~~~~---------------------~~~~~G~~~al~~a~~------~~--~~~~~lv~~gD~~~~~~~  115 (240)
T cd02538          68 GSDLGIR---ITYAV---------------------QPKPGGLAQAFIIGEE------FI--GDDPVCLILGDNIFYGQG  115 (240)
T ss_pred             ccccCce---EEEee---------------------CCCCCCHHHHHHHHHH------hc--CCCCEEEEECCEEEccHH
Confidence            5556543   32211                     1236788887764332      11  235678889999753221


Q ss_pred             CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      --.++-+|.+++.++++-+.+..++ ++.|++... +|  .|+++.|-|.. .          .-...|++.++|+-+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~g--~v~~~~ekp~~-~----------~~~~~~~Giyi~~~~~l  181 (240)
T cd02538         116 LSPILQRAAAQKEGATVFGYEVNDP-ERYGVVEFDENG--RVLSIEEKPKK-P----------KSNYAVTGLYFYDNDVF  181 (240)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECCch-hcCceEEecCCC--cEEEEEECCCC-C----------CCCeEEEEEEEECHHHH
Confidence            2235666777788888777665544 567887654 44  44555443322 0          11246788999998776


Q ss_pred             HH
Q psy10030        346 QR  347 (484)
Q Consensus       346 ~~  347 (484)
                      +.
T Consensus       182 ~~  183 (240)
T cd02538         182 EI  183 (240)
T ss_pred             HH
Confidence            43

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.22  E-value=5.9e-10  Score=110.38  Aligned_cols=192  Identities=17%  Similarity=0.179  Sum_probs=123.2

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||.||||+.   +.||+|+||   .|+|++++.++.+..        .|   |.-+++...+..+.+.++|.+..
T Consensus         2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~~~   67 (254)
T TIGR02623         2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSH--------HG---INDFIICCGYKGYVIKEYFANYF   67 (254)
T ss_pred             EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEcCCCHHHHHHHHHhhh
Confidence            58899999999975   589999999   899999988877753        34   88888888899999999998643


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                      .++.+ .++. ++++.+.....+.+. +.-....+..|.|+||.+......        .+-++++|.|+|++. ...--
T Consensus        68 ~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~gt~~al~~~~~~--------i~~e~flv~~gD~i~-~~dl~  135 (254)
T TIGR02623        68 LHMSD-VTFH-MADNTMEVHHKRVEP-WRVTLVDTGESTQTGGRLKRVREY--------LDDEAFCFTYGDGVA-DIDIK  135 (254)
T ss_pred             hcccC-eeEE-ecccccccccccCCc-cceeeeecCCcCCcHHHHHHHHHh--------cCCCeEEEEeCCeEe-cCCHH
Confidence            32211 1222 233332222211110 000011223578999988765432        224678899999974 33333


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      .++.+|.+.++++++.+++   +.++.|++...+|  .|.++.|-|.. .           -+..|++.++|+-+.++
T Consensus       136 ~~~~~h~~~~~d~tl~~~~---~~~~yG~v~~d~~--~V~~~~Ekp~~-~-----------~~~i~~Giyi~~~~il~  196 (254)
T TIGR02623       136 ALIAFHRKHGKKATVTAVQ---PPGRFGALDLEGE--QVTSFQEKPLG-D-----------GGWINGGFFVLNPSVLD  196 (254)
T ss_pred             HHHHHHHHcCCCEEEEEec---CCCcccEEEECCC--eEEEEEeCCCC-C-----------CCeEEEEEEEEcHHHHh
Confidence            4777888888998765552   3357899876555  45555543321 0           13578899999987763

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.22  E-value=5.8e-10  Score=110.22  Aligned_cols=182  Identities=18%  Similarity=0.284  Sum_probs=121.6

Q ss_pred             EEEEcCC--CCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        112 VIVLAGG--QGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       112 vviLaGG--~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +||||||  .||||+.   +.||+|+||   .|+|++++.++.+..+       .|   +.-+++...+..+.+.+++.+
T Consensus         1 ~iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~-------~g---i~~i~iv~~~~~~~i~~~l~~   67 (257)
T cd06428           1 AVILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV-------PD---LKEVLLIGFYPESVFSDFISD   67 (257)
T ss_pred             CEEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc-------CC---CcEEEEEecCCHHHHHHHHHh
Confidence            4789999  8999986   889999999   8999999998888531       24   666777777888999999986


Q ss_pred             cC-CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        187 NG-YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       187 ~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      .. .+|+.   |.+..|                     ..|.|+|+.+.....     .+....-++++|.++|++. ..
T Consensus        68 ~~~~~~~~---i~~~~~---------------------~~~~Gt~~al~~a~~-----~l~~~~~~~~lv~~gD~~~-~~  117 (257)
T cd06428          68 AQQEFNVP---IRYLQE---------------------YKPLGTAGGLYHFRD-----QILAGNPSAFFVLNADVCC-DF  117 (257)
T ss_pred             cccccCce---EEEecC---------------------CccCCcHHHHHHHHH-----HhhccCCCCEEEEcCCeec-CC
Confidence            42 23432   322222                     236899998765432     2222235789999999984 33


Q ss_pred             CCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE--CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        266 GDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV--DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~--~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      .--.++.+|.++++++++-+.+.. ....+.|++...  +|+  |.++.|-|.. .          .-+..|++.++|+-
T Consensus       118 dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~--v~~~~Ekp~~-~----------~~~~~~~Giyi~~~  184 (257)
T cd06428         118 PLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGE--VLHYVEKPET-F----------VSDLINCGVYLFSP  184 (257)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCe--EEEEEeCCCC-c----------ccceEEEEEEEECH
Confidence            334478888888998887665532 123567887654  343  4444443322 1          01257889999999


Q ss_pred             HHHHHHh
Q psy10030        343 ECLQRMV  349 (484)
Q Consensus       343 ~~l~~~~  349 (484)
                      +.++.+.
T Consensus       185 ~~~~~i~  191 (257)
T cd06428         185 EIFDTIK  191 (257)
T ss_pred             HHHHHHh
Confidence            8776553

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.21  E-value=5.6e-10  Score=108.57  Aligned_cols=182  Identities=19%  Similarity=0.272  Sum_probs=123.5

Q ss_pred             EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      -+|+||||.||||+.   +.||+++|+   .|++++++.++.+..        .|   +.-++....+.++.+.+++.+.
T Consensus         2 ~~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~--------~g---~~~v~iv~~~~~~~~~~~l~~~   67 (233)
T cd06425           2 KALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAK--------AG---VKEIILAVNYRPEDMVPFLKEY   67 (233)
T ss_pred             cEEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHH--------CC---CcEEEEEeeeCHHHHHHHHhcc
Confidence            379999999999975   789999999   799999999988864        23   5556666677788899999753


Q ss_pred             C-CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        188 G-YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       188 ~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      . .+|+.   +.+                     ..+..|.|+|+.+.....     . ....-+-++|++.|++. ...
T Consensus        68 ~~~~~~~---i~~---------------------~~~~~~~G~~~al~~a~~-----~-~~~~~~~~lv~~~D~~~-~~~  116 (233)
T cd06425          68 EKKLGIK---ITF---------------------SIETEPLGTAGPLALARD-----L-LGDDDEPFFVLNSDVIC-DFP  116 (233)
T ss_pred             cccCCeE---EEe---------------------ccCCCCCccHHHHHHHHH-----H-hccCCCCEEEEeCCEee-CCC
Confidence            1 23321   211                     112336898887765432     2 22212447888999875 333


Q ss_pred             CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      -..++.+|.++++++++.+.+..++ .+.|++...++.-+|+++.+-|.+ .          .-+..|++.++|+-+.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~ekp~~-~----------~~~~~~~Giyi~~~~~l~  184 (233)
T cd06425         117 LAELLDFHKKHGAEGTILVTKVEDP-SKYGVVVHDENTGRIERFVEKPKV-F----------VGNKINAGIYILNPSVLD  184 (233)
T ss_pred             HHHHHHHHHHcCCCEEEEEEEcCCc-cccCeEEEcCCCCEEEEEEECCCC-C----------CCCEEEEEEEEECHHHHH
Confidence            3468888988999999888876544 578988655422356677655443 1          113568899999998886


Q ss_pred             HHh
Q psy10030        347 RMV  349 (484)
Q Consensus       347 ~~~  349 (484)
                      .+.
T Consensus       185 ~l~  187 (233)
T cd06425         185 RIP  187 (233)
T ss_pred             hcc
Confidence            654

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.20  E-value=9.1e-10  Score=106.87  Aligned_cols=178  Identities=24%  Similarity=0.341  Sum_probs=116.6

Q ss_pred             EEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+|+||||.||||+   .+.||+++||   .|++++++.++.+..        .|   +.-+++...+..+.+.+++++
T Consensus         1 m~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~--------~~---~~~i~vv~~~~~~~~~~~~~~   66 (236)
T cd04189           1 MKGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLRE--------AG---IEDIGIVVGPTGEEIKEALGD   66 (236)
T ss_pred             CeEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHH--------CC---CCEEEEEcCCCHHHHHHHhcc
Confidence            458999999999997   4899999999   799999998888753        23   444444444578889999987


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      ...++++   +.+..|.                     .|.|+++.+.....     .+   +.+.+++.++|++. ...
T Consensus        67 ~~~~~~~---i~~~~~~---------------------~~~g~~~sl~~a~~-----~i---~~~~~li~~~D~~~-~~~  113 (236)
T cd04189          67 GSRFGVR---ITYILQE---------------------EPLGLAHAVLAARD-----FL---GDEPFVVYLGDNLI-QEG  113 (236)
T ss_pred             hhhcCCe---EEEEECC---------------------CCCChHHHHHHHHH-----hc---CCCCEEEEECCeec-CcC
Confidence            5555543   4333332                     25788776664332     11   12346778899885 332


Q ss_pred             CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      --.++-.|..+++++++.+.+..++ .+.|++...+|  .|+++.+-+.. .          .....|+++++|+-++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~d~~--~v~~~~ek~~~-~----------~~~~~~~Giy~~~~~~~~  179 (236)
T cd04189         114 ISPLVRDFLEEDADASILLAEVEDP-RRFGVAVVDDG--RIVRLVEKPKE-P----------PSNLALVGVYAFTPAIFD  179 (236)
T ss_pred             HHHHHHHHHhcCCceEEEEEECCCc-ccceEEEEcCC--eEEEEEECCCC-C----------CCCEEEEEEEEeCHHHHH
Confidence            2335566777888888877766544 45787765555  55565554332 1          113578999999977665


Q ss_pred             HH
Q psy10030        347 RM  348 (484)
Q Consensus       347 ~~  348 (484)
                      .+
T Consensus       180 ~l  181 (236)
T cd04189         180 AI  181 (236)
T ss_pred             HH
Confidence            44

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.20  E-value=2e-10  Score=112.16  Aligned_cols=181  Identities=22%  Similarity=0.266  Sum_probs=126.6

Q ss_pred             EEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHHHH
Q psy10030        112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYFER  186 (484)
Q Consensus       112 vviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l~~  186 (484)
                      .||||||.||||+   .+.||+|+|+   .|+ |++++.++.+..        .|   +-- ++.+..+..+.+.+++++
T Consensus         2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~--------~g---~~~ii~V~~~~~~~~i~~~~~~   67 (248)
T PF00483_consen    2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN--------AG---IKEIIVVVNGYKEEQIEEHLGS   67 (248)
T ss_dssp             EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH--------TT---CSEEEEEEETTTHHHHHHHHTT
T ss_pred             EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc--------cC---CceEEEEEeecccccccccccc
Confidence            5888999999997   4889999999   788 999999998864        34   555 677777888899999998


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcC-CeEEEEEeCCCCcccc
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRG-IKHIHVYCVDNILVKV  265 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G-~~~i~v~~vDN~l~~~  265 (484)
                      ...+++   +|.+..|+.                     |.|+|+.+..+..     .+.... -++++|+++|++.. .
T Consensus        68 ~~~~~~---~i~~i~~~~---------------------~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~i~~-~  117 (248)
T PF00483_consen   68 GYKFGV---KIEYIVQPE---------------------PLGTAGALLQALD-----FIEEEDDDEDFLVLNGDIIFD-D  117 (248)
T ss_dssp             SGGGTE---EEEEEEESS---------------------SSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEEEES-T
T ss_pred             cccccc---cceeeeccc---------------------ccchhHHHHHHHH-----HhhhccccceEEEEecccccc-c
Confidence            655553   355555544                     5699998886543     222111 24699999999853 3


Q ss_pred             CCHHHHHHHHHcCCc--eEEEEEEccCCCcccceEEEEC-CeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        266 GDPTFLGYCVEQGAH--CGVKVVEKITPGESLGVLCNVD-GKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~--~~~~vv~k~~~~e~~G~l~~~~-g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      .-..++-.|..++.+  +++..++.. ...+.|++...+ |  +|+++-|-|.. ..         ..+..|++.++|+-
T Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d~~~--~V~~~~EKP~~-~~---------~~~~~~~G~Y~~~~  184 (248)
T PF00483_consen  118 DLQDMLEFHRESNADGTVTLLVVPVE-DPSRYGVVEVDEDG--RVIRIVEKPDN-PN---------ASNLINTGIYIFKP  184 (248)
T ss_dssp             THHHHHHHHHHHSSCESEEEEEEESS-GGGGSEEEEEETTS--EEEEEEESCSS-HS---------HSSEEEEEEEEEET
T ss_pred             hhhhHHHhhhcccccccccccccccc-ccccceeeeeccce--eEEEEeccCcc-cc---------cceeccCceEEEcc
Confidence            334588889888884  455555544 456778877664 5  45555444443 10         02467888999998


Q ss_pred             HHHHHHh
Q psy10030        343 ECLQRMV  349 (484)
Q Consensus       343 ~~l~~~~  349 (484)
                      +.+..++
T Consensus       185 ~~~~~~~  191 (248)
T PF00483_consen  185 EIFDFLL  191 (248)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHh
Confidence            8887775

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.17  E-value=1.2e-09  Score=115.47  Aligned_cols=201  Identities=19%  Similarity=0.235  Sum_probs=128.1

Q ss_pred             CCEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY  183 (484)
Q Consensus       108 gkvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~  183 (484)
                      .++.+|+||||.||||+   .+.||+|+||   .|+ +++++.++.+..        .|   +.-+++...+..+.+.++
T Consensus         4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~--------~G---i~~i~iv~~~~~~~i~~~   69 (407)
T PRK00844          4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVN--------SG---YLRIYVLTQYKSHSLDRH   69 (407)
T ss_pred             CceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHH--------CC---CCEEEEEeccCHHHHHHH
Confidence            57999999999999998   6899999999   898 999999888864        34   777788888999999999


Q ss_pred             HHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcc
Q psy10030        184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV  263 (484)
Q Consensus       184 l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~  263 (484)
                      |.+.  +.+....+.++..  .|.-          ...-...|.|+||.+.....     .+.....++++|.++|++. 
T Consensus        70 ~~~~--~~~~~~~~~~~~~--~~~~----------~~~~~~~~lGta~al~~a~~-----~i~~~~~~~~lv~~gD~v~-  129 (407)
T PRK00844         70 ISQT--WRLSGLLGNYITP--VPAQ----------QRLGKRWYLGSADAIYQSLN-----LIEDEDPDYVVVFGADHVY-  129 (407)
T ss_pred             HHhC--cCccccCCCeEEE--CCcc----------cCCCCCcccCCHHHHHHHHH-----HHHhcCCCEEEEecCCEEE-
Confidence            9743  3322111211110  0000          00011236899998775432     3333334789999999974 


Q ss_pred             ccCCHHHHHHHHHcCCceEEEEEE--ccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeee
Q psy10030        264 KVGDPTFLGYCVEQGAHCGVKVVE--KITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF  340 (484)
Q Consensus       264 ~~~Dp~~lg~~~~~~~~~~~~vv~--k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~  340 (484)
                      ...--.++.+|..+++++++.+..  ..++ .+.|++... +|+  +.++.+-|.. .......   ......|++.+.|
T Consensus       130 ~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~-~~~Gvv~~d~~g~--v~~~~eKp~~-~~~~~~~---~~~~~~~~Giyi~  202 (407)
T PRK00844        130 RMDPRQMVDFHIESGAGVTVAAIRVPREEA-SAFGVIEVDPDGR--IRGFLEKPAD-PPGLPDD---PDEALASMGNYVF  202 (407)
T ss_pred             cCCHHHHHHHHHhcCCcEEEEEEecchHHc-ccCCEEEECCCCC--EEEEEECCCC-cccccCC---CCCcEEEeEEEEE
Confidence            333335788888888887766543  2333 467888754 444  4444444432 1110100   0123578889999


Q ss_pred             cHHHHHHHh
Q psy10030        341 SLECLQRMV  349 (484)
Q Consensus       341 ~l~~l~~~~  349 (484)
                      +-++|.+++
T Consensus       203 ~~~~l~~~l  211 (407)
T PRK00844        203 TTDALVDAL  211 (407)
T ss_pred             eHHHHHHHH
Confidence            998875544

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.15  E-value=1.7e-09  Score=104.20  Aligned_cols=175  Identities=14%  Similarity=0.138  Sum_probs=116.1

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||.||||+.   +.||+|+|+   .|++++++.++.+.+        .|   +.-+++...+..+.+.+++.+ .
T Consensus         2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~-~   66 (221)
T cd06422           2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAA--------AG---IRRIVVNTHHLADQIEAHLGD-S   66 (221)
T ss_pred             EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHH--------CC---CCEEEEEccCCHHHHHHHHhc-c
Confidence            58999999999975   799999999   799999999988864        34   777888888999999999987 4


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                      ++|+.   |.+..|.                    ..+.|+++.+.....     .+   +.++++|++.|++. ...--
T Consensus        67 ~~~~~---i~~~~~~--------------------~~~~g~~~~l~~~~~-----~~---~~~~~lv~~~D~i~-~~~~~  114 (221)
T cd06422          67 RFGLR---ITISDEP--------------------DELLETGGGIKKALP-----LL---GDEPFLVVNGDILW-DGDLA  114 (221)
T ss_pred             cCCce---EEEecCC--------------------CcccccHHHHHHHHH-----hc---CCCCEEEEeCCeee-CCCHH
Confidence            45542   3222111                    135688776654332     11   23789999999985 33223


Q ss_pred             HHHHHHH--HcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        269 TFLGYCV--EQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       269 ~~lg~~~--~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      .++-.|.  ..++.+++.+++... .+..|++...++ -.+.++.+-++.              +..|++.++|+-+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d~~-~~v~~~~~~~~~--------------~~~~~Giyi~~~~~l~  178 (221)
T cd06422         115 PLLLLHAWRMDALLLLLPLVRNPG-HNGVGDFSLDAD-GRLRRGGGGAVA--------------PFTFTGIQILSPELFA  178 (221)
T ss_pred             HHHHHHHhccCCCceEEEEEEcCC-CCCcceEEECCC-CcEeecccCCCC--------------ceEEEEEEEEcHHHHh
Confidence            3555565  456677766666543 345687765432 234444322211              3468888999987776


Q ss_pred             HHh
Q psy10030        347 RMV  349 (484)
Q Consensus       347 ~~~  349 (484)
                      .+.
T Consensus       179 ~l~  181 (221)
T cd06422         179 GIP  181 (221)
T ss_pred             hCC
Confidence            654

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.14  E-value=1.3e-09  Score=105.05  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      -+|+||||.||||+.   ..||+|+||   .|++++++.++.+.+        .|   +.-+++...+..+.++++|++.
T Consensus         2 ~aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~--------~G---i~~I~iv~~~~~~~i~~~l~~~   67 (217)
T cd04197           2 QAVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLAL--------NG---VEEVFVFCCSHSDQIKEYIEKS   67 (217)
T ss_pred             eEEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHH--------CC---CCeEEEEeCCCHHHHHHHHhhc
Confidence            379999999999984   899999999   899999999988864        35   6555555557889999999986


Q ss_pred             CCCCCCC--CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        188 GYFGLDP--AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       188 ~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      .++++..  ..+.+..|                     ..+.|.|++++.+...+.+       .+++++.++|++.  .
T Consensus        68 ~~~~~~~~~~~i~~~~~---------------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~--~  117 (217)
T cd04197          68 KWSKPKSSLMIVIIIMS---------------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS--N  117 (217)
T ss_pred             cccccccCcceEEEEeC---------------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeee--c
Confidence            5555431  12222211                     1256788888765443221       3567899999985  3


Q ss_pred             CCH-HHHHHHHHc-----CCceEEEEEEccCCCc-----ccceEEEECCeEEEEEeccCC
Q psy10030        266 GDP-TFLGYCVEQ-----GAHCGVKVVEKITPGE-----SLGVLCNVDGKHKIVEYSELG  314 (484)
Q Consensus       266 ~Dp-~~lg~~~~~-----~~~~~~~vv~k~~~~e-----~~G~l~~~~g~~~vvEyse~~  314 (484)
                      .|. .++.+|.++     ++++++-+.+...+..     ..|++...+..-+++.+.+-+
T Consensus       118 ~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp  177 (217)
T cd04197         118 IDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELP  177 (217)
T ss_pred             cCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEeccc
Confidence            444 478888773     7888776655543331     135655443323455555544

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.14  E-value=3.4e-09  Score=114.40  Aligned_cols=176  Identities=19%  Similarity=0.248  Sum_probs=113.0

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.||||+...||.|+|+   .|+|++++.++.+.+        .|   +.-+++...+..+.+.++++.  
T Consensus         7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~--------~g---i~~ivvv~~~~~~~i~~~~~~--   70 (481)
T PRK14358          7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARD--------LG---ARKIVVVTGHGAEQVEAALQG--   70 (481)
T ss_pred             CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHh--------CC---CCeEEEEeCCCHHHHHHHhcc--
Confidence            58899999999999998889999999   899999999888854        23   555566666777788887752  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       .+     +.+..|+                     .|.|+|+.+.....     .+ ...-+.++|+++|+++....+.
T Consensus        71 -~~-----i~~v~~~---------------------~~~Gt~~al~~~~~-----~l-~~~~~~~lV~~gD~P~i~~~~l  117 (481)
T PRK14358         71 -SG-----VAFARQE---------------------QQLGTGDAFLSGAS-----AL-TEGDADILVLYGDTPLLRPDTL  117 (481)
T ss_pred             -CC-----cEEecCC---------------------CcCCcHHHHHHHHH-----Hh-hCCCCcEEEEeCCeeccCHHHH
Confidence             12     3332221                     26788887664322     22 2223447899999976432222


Q ss_pred             -HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        269 -TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       269 -~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                       .++.++.++++++++-+.+..++ .++|++... +|+  +.++.|-++....+.       .-+..|++.++|+-+
T Consensus       118 ~~ll~~~~~~~~~~ti~~~~~~~~-~~yG~v~~d~~g~--v~~~~Ek~~~~~~~~-------~~~~~n~Giyi~~~~  184 (481)
T PRK14358        118 RALVADHRAQGSAMTILTGELPDA-TGYGRIVRGADGA--VERIVEQKDATDAEK-------AIGEFNSGVYVFDAR  184 (481)
T ss_pred             HHHHHHHHhcCCeEEEEEEEcCCC-CCceEEEECCCCC--EEEEEECCCCChhHh-------hCCeEEEEEEEEchH
Confidence             24666677788887766665544 468998765 454  344444332201110       112468889999944

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.13  E-value=2.4e-09  Score=113.77  Aligned_cols=200  Identities=18%  Similarity=0.215  Sum_probs=128.8

Q ss_pred             CCEEEEEEcCCCCccccc---cCCCccccccCCCCCc-HHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKS-LFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY  183 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s-~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~  183 (484)
                      .++.+||||||.||||..   +.||+|+||   .|++ ++++.++.+..        .|   +.-+++...+..+.+.++
T Consensus        14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~--------~G---i~~i~vv~~~~~~~i~~~   79 (425)
T PRK00725         14 RDTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN--------SG---IRRIGVLTQYKAHSLIRH   79 (425)
T ss_pred             cceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH--------CC---CCeEEEEecCCHHHHHHH
Confidence            378999999999999986   799999999   8896 99999988864        34   666666667889999999


Q ss_pred             HHHcCCCCCCC----CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCC
Q psy10030        184 FERNGYFGLDP----AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVD  259 (484)
Q Consensus       184 l~~~~~fgl~~----~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vD  259 (484)
                      |.+.  +++.+    ..+.++.+..              ....+..|.|+|+++.....     .+....-++++|.++|
T Consensus        80 ~~~~--~~~~~~~~~~~i~i~~~~~--------------~~~~e~~~lGTa~al~~a~~-----~l~~~~~d~~lVl~gD  138 (425)
T PRK00725         80 IQRG--WSFFREELGEFVDLLPAQQ--------------RVDEENWYRGTADAVYQNLD-----IIRRYDPKYVVILAGD  138 (425)
T ss_pred             HHhh--hcccccCCCCeEEEeCCcc--------------cCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecCC
Confidence            9763  33211    1121111111              11123457899998776542     3333335789999999


Q ss_pred             CCccccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceee
Q psy10030        260 NILVKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICN  337 (484)
Q Consensus       260 N~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~  337 (484)
                      ++. ...--.++-+|.++++++++.+.+.. .....+|++... +|+  +.++.|-|.. .......   ...+..|++.
T Consensus       139 ~l~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~--V~~~~EKp~~-~~~~~~~---~~~~l~n~GI  211 (425)
T PRK00725        139 HIY-KMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR--ITAFVEKPAN-PPAMPGD---PDKSLASMGI  211 (425)
T ss_pred             eEe-ccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCC--EEEEEECCCC-ccccccC---ccceEEEeeE
Confidence            974 33333478888888998887664431 123467888764 343  4444443322 1100000   1123678999


Q ss_pred             eeecHHHHHHHh
Q psy10030        338 HYFSLECLQRMV  349 (484)
Q Consensus       338 ~~~~l~~l~~~~  349 (484)
                      ++|+-++|.+++
T Consensus       212 Yi~~~~~L~~~L  223 (425)
T PRK00725        212 YVFNADYLYELL  223 (425)
T ss_pred             EEEeHHHHHHHH
Confidence            999999876654

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.13  E-value=3.2e-09  Score=101.42  Aligned_cols=178  Identities=19%  Similarity=0.279  Sum_probs=115.1

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||+||||+.   +.||+++|+   .|+|++++.++.+..        .|   +.-++++..+..+.+.+++....
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~--------~g---~~~v~vv~~~~~~~i~~~~~~~~   66 (223)
T cd06915           1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLAR--------QG---ISRIVLSVGYLAEQIEEYFGDGY   66 (223)
T ss_pred             CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHH--------CC---CCEEEEEcccCHHHHHHHHcCcc
Confidence            48999999999975   689999999   899999999988863        23   66667777777888888887543


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                      .++..   +.+..|                     ..+.|+++.+.....     .+   .-++++|.+.|+++ ...--
T Consensus        67 ~~~~~---~~~~~~---------------------~~~~G~~~~l~~a~~-----~~---~~~~~lv~~~D~~~-~~~~~  113 (223)
T cd06915          67 RGGIR---IYYVIE---------------------PEPLGTGGAIKNALP-----KL---PEDQFLVLNGDTYF-DVDLL  113 (223)
T ss_pred             ccCce---EEEEEC---------------------CCCCcchHHHHHHHh-----hc---CCCCEEEEECCccc-CCCHH
Confidence            23321   221111                     235788765543322     12   34789999999975 22222


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM  348 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~  348 (484)
                      .++-.+.+.+.++++.+.+..++ .+.|.+...++ -+++++.+-+.. .          .....|++.++|+-++++.+
T Consensus       114 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~d~~-~~v~~~~ek~~~-~----------~~~~~~~Giy~~~~~~l~~~  180 (223)
T cd06915         114 ALLAALRASGADATMALRRVPDA-SRYGNVTVDGD-GRVIAFVEKGPG-A----------APGLINGGVYLLRKEILAEI  180 (223)
T ss_pred             HHHHHHHhCCCcEEEEEEECCCC-CcceeEEECCC-CeEEEEEeCCCC-C----------CCCcEEEEEEEECHHHHhhC
Confidence            35555666788888877765543 46676543322 244555543322 1          11256788999999988765


Q ss_pred             h
Q psy10030        349 V  349 (484)
Q Consensus       349 ~  349 (484)
                      .
T Consensus       181 ~  181 (223)
T cd06915         181 P  181 (223)
T ss_pred             C
Confidence            3

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.12  E-value=4.8e-09  Score=111.78  Aligned_cols=176  Identities=19%  Similarity=0.202  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCC
Q psy10030        111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYF  190 (484)
Q Consensus       111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~f  190 (484)
                      .+|+||||.||||+.+.||.|+|+   .|+|++++.++.+..        .+   -..+|.+ .+..+.+.+++.+    
T Consensus         2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~--------~~---~~i~vv~-~~~~~~i~~~~~~----   62 (448)
T PRK14357          2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKK--------VA---QKVGVVL-GHEAELVKKLLPE----   62 (448)
T ss_pred             eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHh--------cC---CcEEEEe-CCCHHHHHHhccc----
Confidence            579999999999998899999999   899999999887753        12   1334444 4545666655542    


Q ss_pred             CCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-HH
Q psy10030        191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-PT  269 (484)
Q Consensus       191 gl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-p~  269 (484)
                           .+.++.|+                     .|.|+++.+.....     .+ . .-+++++++.|+++....| -.
T Consensus        63 -----~~~~~~~~---------------------~~~g~~~ai~~a~~-----~l-~-~~~~vlv~~gD~p~i~~~~i~~  109 (448)
T PRK14357         63 -----WVKIFLQE---------------------EQLGTAHAVMCARD-----FI-E-PGDDLLILYGDVPLISENTLKR  109 (448)
T ss_pred             -----ccEEEecC---------------------CCCChHHHHHHHHH-----hc-C-cCCeEEEEeCCcccCCHHHHHH
Confidence                 12233332                     25688777664432     12 1 2478999999997643333 23


Q ss_pred             HHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030        270 FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       270 ~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                      ++.++.++++++++.+++..+| .+.|.+...+|+...+|....+.. .         ...+..|++.++|+-+.|.+++
T Consensus       110 l~~~~~~~~~d~ti~~~~~~~~-~~~g~v~~d~g~v~~~e~~~~~~~-~---------~~~~~~~~GiYv~~~~~l~~~~  178 (448)
T PRK14357        110 LIEEHNRKGADVTILVADLEDP-TGYGRIIRDGGKYRIVEDKDAPEE-E---------KKIKEINTGIYVFSGDFLLEVL  178 (448)
T ss_pred             HHHHHHhcCCeEEEEEEEcCCC-CCcEEEEEcCCeEEEEECCCCChH-H---------hcCcEEEeEEEEEEHHHHHHHH
Confidence            5666777789988877776645 457887666777666765432221 1         0113568899999988877655

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.11  E-value=9e-09  Score=109.72  Aligned_cols=247  Identities=17%  Similarity=0.189  Sum_probs=139.7

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      +++|+||||.||||+.+.||.|+|+   .|+|++++.++.+..        .| . ...+|.+ .+..+.+.++++++. 
T Consensus         2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~--------~g-~-~~iivvv-~~~~~~i~~~~~~~~-   66 (450)
T PRK14360          2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEE--------LK-P-DRRLVIV-GHQAEEVEQSLAHLP-   66 (450)
T ss_pred             ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHh--------CC-C-CeEEEEE-CCCHHHHHHHhcccC-
Confidence            6789999999999998899999999   899999999988864        23 1 2344444 455566777775421 


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-H
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-P  268 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-p  268 (484)
                            .+.+..|.                     .+.|+++.+.....     .+. ...++++|++.|.++....+ -
T Consensus        67 ------~i~~v~~~---------------------~~~G~~~sv~~~~~-----~l~-~~~~~vlV~~~D~P~i~~~~l~  113 (450)
T PRK14360         67 ------GLEFVEQQ---------------------PQLGTGHAVQQLLP-----VLK-GFEGDLLVLNGDVPLLRPETLE  113 (450)
T ss_pred             ------CeEEEEeC---------------------CcCCcHHHHHHHHH-----Hhh-ccCCcEEEEeCCccccCHHHHH
Confidence                  23333221                     24677766554332     222 22357899999998632221 2


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR  347 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~  347 (484)
                      .++..+.+.++++++.+.+..+|. ..|.+... +|+  +++..|-+.. ......      -+..|++.++|+.+.+.+
T Consensus       114 ~ll~~~~~~~~~~~~~~~~~~~~~-~~g~~~~d~~g~--v~~~~ek~~~-~~~~~~------~~~~~~Giy~f~~~~l~~  183 (450)
T PRK14360        114 ALLNTHRSSNADVTLLTARLPNPK-GYGRVFCDGNNL--VEQIVEDRDC-TPAQRQ------NNRINAGIYCFNWPALAE  183 (450)
T ss_pred             HHHHHHHhcCCcEEEEEEecCCCC-CccEEEECCCCC--EEEEEECCCC-ChhHhc------CcEEEEEEEEEEHHHHHH
Confidence            245555566777776555555554 46776542 444  3343332221 100000      124678889999988777


Q ss_pred             HhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHH
Q psy10030        348 MVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTC  426 (484)
Q Consensus       348 ~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta  426 (484)
                      +.+.   +...                      +.+-|..+.|.++.+.+...+.|.-. +..-+.      ..++...+
T Consensus       184 ~~~~---~~~~----------------------~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~------~~~dl~~~  232 (450)
T PRK14360        184 VLPK---LSSN----------------------NDQKEYYLTDTVSLLDPVMAVEVEDYQEINGIN------DRKQLAQC  232 (450)
T ss_pred             HHhh---cccc----------------------ccCCceeHHHHHHHHhhceEEecCCHHHhhcCC------CHHHHHHH
Confidence            6521   1000                      01233445555554444444444322 221111      12466777


Q ss_pred             HHHHHHHHHHHHHHcCcEE
Q psy10030        427 CQAVHALHARWIETAGGVV  445 (484)
Q Consensus       427 ~~~l~~~~~~~l~~~g~~~  445 (484)
                      +..+.....+++...|..+
T Consensus       233 ~~~l~~~~~~~~~d~~~~~  251 (450)
T PRK14360        233 EEILQNRIKEKWMLAGVTF  251 (450)
T ss_pred             HHHHHHHHHHHHHhcCcEE
Confidence            7777666666666667764

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.09  E-value=4.9e-09  Score=100.58  Aligned_cols=173  Identities=23%  Similarity=0.339  Sum_probs=114.5

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||.||||+.   ..||+|+|+   .|++++++.++.+..        .|   +.-+++...+..+.+.+++.+..
T Consensus         1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~--------~~---~~~iivv~~~~~~~i~~~~~~~~   66 (220)
T cd06426           1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIA--------QG---FRNFYISVNYLAEMIEDYFGDGS   66 (220)
T ss_pred             CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHH--------CC---CcEEEEECccCHHHHHHHHCCcc
Confidence            58999999999974   789999999   899999999988863        23   66666777777888888887643


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                      .++++   +.+..|                     ..|.|+|+.+..+..         ...+.++|.+.|++. ...--
T Consensus        67 ~~~~~---i~~~~~---------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~-~~~~~  112 (220)
T cd06426          67 KFGVN---ISYVRE---------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDILT-NLNYE  112 (220)
T ss_pred             ccCcc---EEEEEC---------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCEee-ccCHH
Confidence            34432   332222                     135688888765432         225788999999864 33333


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM  348 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~  348 (484)
                      .++..+...+.++++.+.+.. +....|++...+|  .|+++.+-+..             -...|++.++|+-++++.+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~d~~--~v~~~~ek~~~-------------~~~~~~Giy~~~~~~~~~i  176 (220)
T cd06426         113 HLLDFHKENNADATVCVREYE-VQVPYGVVETEGG--RITSIEEKPTH-------------SFLVNAGIYVLEPEVLDLI  176 (220)
T ss_pred             HHHHHHHhcCCCEEEEEEEcC-CCCcceEEEECCC--EEEEEEECCCC-------------CCeEEEEEEEEcHHHHhhc
Confidence            466667777888877666544 4455676544443  45555432211             1245788899998876543

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.07  E-value=5.1e-09  Score=108.28  Aligned_cols=177  Identities=23%  Similarity=0.325  Sum_probs=117.9

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~  187 (484)
                      +|+||||.||||+.   +.||+++|+   .+++++++.++.+..        .|   +. .++++.....+.+.+++.+.
T Consensus         2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~~i~~~~~~~   67 (353)
T TIGR01208         2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAE--------AG---ITDIGIVVGPVTGEEIKEIVGEG   67 (353)
T ss_pred             EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHH--------CC---CCEEEEEeCCCCHHHHHHHHhcc
Confidence            68999999999974   889999999   899999999888753        23   54 45555554889999999875


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                      ..|+++   +.+..|.                     .|.|+++.+.+....     +   +.+.++|.+.|+++ ...-
T Consensus        68 ~~~~~~---~~~~~~~---------------------~~~G~~~al~~a~~~-----l---~~~~~li~~gD~~~-~~~l  114 (353)
T TIGR01208        68 ERFGAK---ITYIVQG---------------------EPLGLAHAVYTARDF-----L---GDDDFVVYLGDNLI-QDGI  114 (353)
T ss_pred             cccCce---EEEEECC---------------------CCCCHHHHHHHHHHh-----c---CCCCEEEEECCeec-CccH
Confidence            556643   3333332                     267898877754332     2   22457788999986 3322


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR  347 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~  347 (484)
                      -.++-.|.++++++++-+.+..++ +..|++...++. ++.++.+-+.. .          .-...|++.++|+-.+++.
T Consensus       115 ~~l~~~~~~~~~d~ti~~~~~~~~-~~~g~~~~~~~~-~v~~~~ekp~~-~----------~~~~~~~Giy~~~~~l~~~  181 (353)
T TIGR01208       115 SRFVKSFEEKDYDALILLTKVRDP-TAFGVAVLEDGK-RILKLVEKPKE-P----------PSNLAVVGLYMFRPLIFEA  181 (353)
T ss_pred             HHHHHHHHhcCCCcEEEEEECCCh-hhCeEEEEcCCC-cEEEEEECCCC-C----------CccceEEEEEEECHHHHHH
Confidence            347777888899988877765555 467877664332 34444333322 1          0124688899999865554


Q ss_pred             H
Q psy10030        348 M  348 (484)
Q Consensus       348 ~  348 (484)
                      +
T Consensus       182 l  182 (353)
T TIGR01208       182 I  182 (353)
T ss_pred             H
Confidence            4

Alternate name: dTDP-D-glucose synthase

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.07  E-value=6.2e-09  Score=99.14  Aligned_cols=177  Identities=24%  Similarity=0.349  Sum_probs=117.8

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||.||||+.   ..||+++|+   .|++++++.++.+..        .|   +.-+++...+..+.+.+++.+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~--------~g---~~~i~vv~~~~~~~i~~~~~~~~   66 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLAR--------AG---IDEIILVVGYLGEQIEEYFGDGS   66 (217)
T ss_pred             CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHH--------CC---CCEEEEEeccCHHHHHHHHcChh
Confidence            48999999999974   689999999   899999999988864        23   55555555566778888887654


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                      .+|+.   +.+..|.                     .|.|+++.+.....     .+   .-++++|.+.|++. ....-
T Consensus        67 ~~~~~---i~~~~~~---------------------~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~-~~~~~  113 (217)
T cd04181          67 KFGVN---IEYVVQE---------------------EPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLT-DLDLS  113 (217)
T ss_pred             hcCce---EEEEeCC---------------------CCCccHHHHHHhhh-----hc---CCCCEEEEECCeec-CcCHH
Confidence            34432   3332221                     25788877765432     12   46789999999975 33344


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM  348 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~  348 (484)
                      .++.++..+++++++-+.+.. ...+.|.+...+ .-+|+++.+-+.. ..          -...|++.++|+-++++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d~-~~~v~~~~ek~~~-~~----------~~~~~~Giy~~~~~~~~~l  180 (217)
T cd04181         114 ELLRFHREKGADATIAVKEVE-DPSRYGVVELDD-DGRVTRFVEKPTL-PE----------SNLANAGIYIFEPEILDYI  180 (217)
T ss_pred             HHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEcC-CCcEEEEEECCCC-CC----------CCEEEEEEEEECHHHHHhh
Confidence            467778888999888777665 445678765443 2245555554332 10          1256888899998776433

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.07  E-value=3.6e-09  Score=112.85  Aligned_cols=214  Identities=18%  Similarity=0.250  Sum_probs=131.5

Q ss_pred             CCEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY  183 (484)
Q Consensus       108 gkvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~  183 (484)
                      .++.+|+||||.||||.   .+.||+|+|+   .|+ ++++++++.+..        .|   +.-+++...+..+.+.++
T Consensus         2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~--------~G---i~~i~iv~~~~~~~i~~~   67 (436)
T PLN02241          2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN--------SG---INKIYVLTQFNSASLNRH   67 (436)
T ss_pred             CceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh--------CC---CCEEEEEeccCHHHHHHH
Confidence            37889999999999997   4899999999   776 999999888853        35   777777888899999999


Q ss_pred             HHHcCCCCCCCCcEEEEEcCCccccccCCcccccC-CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030        184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET-RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL  262 (484)
Q Consensus       184 l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~-~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l  262 (484)
                      |++...|+....    +.++.+..+       ... ...-...|.|+||.++....  .+++...++.++++|.+.|++.
T Consensus        68 l~~~~~~~~~~~----~~~~~~~i~-------~~~q~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~  134 (436)
T PLN02241         68 LSRAYNFGNGGN----FGDGFVEVL-------AATQTPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLY  134 (436)
T ss_pred             HhccCCCCCCcc----cCCCCEEEc-------CCcccCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEE
Confidence            985433432210    011110000       000 00001248999998865432  1222111125889999999974


Q ss_pred             cccCCHHHHHHHHHcCCceEEEEEEccC-CCcccceEEEECCeEEEEEeccCCcccccccc--c-------C-CCccccc
Q psy10030        263 VKVGDPTFLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNVDGKHKIVEYSELGNCSVFETQ--D-------Q-TGRLKFN  331 (484)
Q Consensus       263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~--~-------~-~g~~~f~  331 (484)
                       ...--.++.+|.++++++++-+.+... ..+..|++.. ++.-+++++.|-|........  +       + +=+...+
T Consensus       135 -~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~-d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (436)
T PLN02241        135 -RMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI-DDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPY  212 (436)
T ss_pred             -ccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE-CCCCCEEEEEECCCCcccccccccccccccccccccccce
Confidence             333335788888889988766554321 1257898876 333356677665533100000  0       0 0001123


Q ss_pred             ccceeeeeecHHHHHHHhh
Q psy10030        332 LGSICNHYFSLECLQRMVK  350 (484)
Q Consensus       332 ~~Ni~~~~~~l~~l~~~~~  350 (484)
                      ..|+.++.|+-+.|..+.+
T Consensus       213 ~~~~GIyi~~~~~l~~ll~  231 (436)
T PLN02241        213 IASMGIYVFKKDVLLKLLR  231 (436)
T ss_pred             EEEeEEEEEEHHHHHHHHH
Confidence            5788999999988866643

>KOG1322|consensus

Probab=99.04  E-value=1.1e-08  Score=102.65  Aligned_cols=185  Identities=19%  Similarity=0.248  Sum_probs=136.5

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCch-HHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDR-PTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e-~t~~~l  184 (484)
                      .|+.++|.||.||||.   ...||++.|+   .++++++++++.+..        .|   |.-+++...++.+ ..+.+.
T Consensus         9 ~vkaiILvGG~GTRLrPLT~t~pKPlVpf---gn~pmI~hqieal~n--------sG---i~~I~la~~y~s~sl~~~~~   74 (371)
T KOG1322|consen    9 SVKAIILVGGYGTRLRPLTLTRPKPLVPF---GNKPMILHQIEALIN--------SG---ITKIVLATQYNSESLNRHLS   74 (371)
T ss_pred             ceeEEEEecCCCceeeceeccCCCccccc---CcchhhHHHHHHHHh--------CC---CcEEEEEEecCcHHHHHHHH
Confidence            6899999999999985   4899999999   599999988887753        34   5555555555555 555555


Q ss_pred             HHcC-CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCe-EEEEEeCCCCc
Q psy10030        185 ERNG-YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK-HIHVYCVDNIL  262 (484)
Q Consensus       185 ~~~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~-~i~v~~vDN~l  262 (484)
                      +.+. .||.   .| +|.|.+                    .|.|+.|-..+.++.      +...-+ .+||.|.|-+ 
T Consensus        75 k~y~~~lgV---ei-~~s~et--------------------eplgtaGpl~laR~~------L~~~~~~~ffVLnsDvi-  123 (371)
T KOG1322|consen   75 KAYGKELGV---EI-LASTET--------------------EPLGTAGPLALARDF------LWVFEDAPFFVLNSDVI-  123 (371)
T ss_pred             HHhhhccce---EE-EEEecc--------------------CCCcccchHHHHHHH------hhhcCCCcEEEecCCee-
Confidence            5542 3552   34 333333                    389999998877643      212121 6899999987 


Q ss_pred             cccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        263 VKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      ++..--.|+.+|.+++++.++.|++...| .++|++.-+.+.-+|..++|-|++ .          .-+--|...++|+-
T Consensus       124 ~~~p~~~~vqfH~~~gae~TI~~t~vdep-SkyGvv~~d~~~grV~~F~EKPkd-~----------vsnkinaGiYi~~~  191 (371)
T KOG1322|consen  124 CRMPYKEMVQFHRAHGAEITIVVTKVDEP-SKYGVVVIDEDTGRVIRFVEKPKD-L----------VSNKINAGIYILNP  191 (371)
T ss_pred             ecCCHHHHHHHHHhcCCceEEEEEeccCc-cccceEEEecCCCceeEehhCchh-h----------hhccccceEEEECH
Confidence            57666779999999999999999998864 689999877666778888888886 3          22345788999999


Q ss_pred             HHHHHHhh
Q psy10030        343 ECLQRMVK  350 (484)
Q Consensus       343 ~~l~~~~~  350 (484)
                      +.|.++..
T Consensus       192 ~vL~ri~~  199 (371)
T KOG1322|consen  192 EVLDRILL  199 (371)
T ss_pred             HHHhHhhh
Confidence            99988763

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=99.04  E-value=1.6e-10  Score=123.51  Aligned_cols=108  Identities=21%  Similarity=0.324  Sum_probs=71.5

Q ss_pred             CCCCCCChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc--------
Q psy10030          4 SGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV--------   75 (484)
Q Consensus         4 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~--------   75 (484)
                      .++.+ +++.+.+|++.|+++|++|+|||++||||||||||.+.||||++|+++  .++++.++...+...+        
T Consensus        82 ~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~  158 (482)
T PTZ00339         82 IDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPV--KKKTLFQFHCEKVRRLEEMAVAVS  158 (482)
T ss_pred             ccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCC--CCccHHHHHHHHHHHHhhhhhccc
Confidence            34443 477889999999999999999999999999999999999999999863  3444444333222222        


Q ss_pred             -----ccCCCCcccCCCCCChhhHHHHHHh----chh-----cccCCCEEEEEEc
Q psy10030         76 -----QVFPPNCLSGVNTVDASTLGKYREL----GLK-----LISRGDVAVIVLA  116 (484)
Q Consensus        76 -----~p~~~~~~~~~~~~~~~~~~~~~~~----G~~-----~i~~gkvavviLa  116 (484)
                           .++|+..|.+..+  .+...++-+.    |++     .+.++++-++...
T Consensus       159 ~~~~~~~Ip~~IMTS~~t--~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~  211 (482)
T PTZ00339        159 GGGDDPTIYILVLTSSFN--HDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDEN  211 (482)
T ss_pred             ccccCCCCCEEEEeCcch--HHHHHHHHHhccccCCCcccEEEEecCCcceEecC
Confidence                 2467777766432  3333343332    332     3455666665544

>KOG1460|consensus

Probab=99.03  E-value=8.5e-09  Score=101.88  Aligned_cols=242  Identities=19%  Similarity=0.277  Sum_probs=158.9

Q ss_pred             CEEEEEEcCC--CCccc---cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030        109 DVAVIVLAGG--QGTRL---GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY  183 (484)
Q Consensus       109 kvavviLaGG--~GTRL---G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~  183 (484)
                      ++.+|+|.||  .|||.   .++.||+++||   .|.++.++++....++.       |   +.-+++.-++..+....|
T Consensus         2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~-------~---l~eI~LvGFy~e~~f~~f   68 (407)
T KOG1460|consen    2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQIS-------G---LAEILLVGFYEERVFTDF   68 (407)
T ss_pred             ceEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhccc-------c---hhheeEEecccchHHHHH
Confidence            4667788888  79995   57999999999   99999999888776544       2   555677778888888888


Q ss_pred             HHHc-CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030        184 FERN-GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL  262 (484)
Q Consensus       184 l~~~-~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l  262 (484)
                      +.+- +.|.++   |                     ++--+..|+|+||.+..+++     ...+---..+||.|.|-. 
T Consensus        69 is~~~~e~~~p---v---------------------rYL~E~~plGtaGgLyhFrd-----qIl~g~ps~vFvlnaDVC-  118 (407)
T KOG1460|consen   69 ISAIQQEFKVP---V---------------------RYLREDNPLGTAGGLYHFRD-----QILAGSPSAVFVLNADVC-  118 (407)
T ss_pred             HHHHHhhcccc---h---------------------hhhccCCCCCcccceeehhh-----HHhcCCCceEEEEeccee-
Confidence            8763 234332   2                     35557789999998877664     455455789999999987 


Q ss_pred             cccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeec
Q psy10030        263 VKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFS  341 (484)
Q Consensus       263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~  341 (484)
                      +...-+.++..|...+..+++.++... ......|.++..-..-.++-|.|-|.-           +.-..-|...+.|+
T Consensus       119 csfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsT-----------fvSd~InCGvYlF~  187 (407)
T KOG1460|consen  119 CSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPST-----------FVSDIINCGVYLFT  187 (407)
T ss_pred             cCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcch-----------hhhcccceeEEEec
Confidence            445567799999999998887766543 133577888876555567788887654           11234577788999


Q ss_pred             HHHHHHHhhc---cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccccCCC
Q psy10030        342 LECLQRMVKE---DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSP  415 (484)
Q Consensus       342 l~~l~~~~~~---~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~  415 (484)
                      -+.++.+.+-   ..++  .-..|..|-.++ |    |  ..-++||+-++.-+.-.++.-+++  .. -++.+|.+-
T Consensus       188 ~eif~~i~~v~~q~~~~--~~~~~~~~~l~~-g----~--~d~irLeqDvlspLag~k~lY~y~--t~~fW~QiKtag  254 (407)
T KOG1460|consen  188 PEIFNAIAEVYRQRQDL--LEVEKDLPLLQP-G----P--ADFIRLEQDVLSPLAGSKQLYAYE--TTDFWSQIKTAG  254 (407)
T ss_pred             HHHHHHHHHHHHHHHhh--hhhhhcccccCC-C----c--cceEEeechhhhhhcCCCceEEEe--cccHHHHhcccc
Confidence            8866655432   1111  112233333321 1    1  112688874443322223344444  44 567888874

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.03  E-value=1.3e-08  Score=108.48  Aligned_cols=205  Identities=18%  Similarity=0.196  Sum_probs=124.4

Q ss_pred             CEEEEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      ++.+|+||||.||||..   +.||+|+||   .|+ +++++.++.+..        .|   +.-+++...+..+.++++|
T Consensus         3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~--------~G---i~~vivv~~~~~~~i~~~l   68 (429)
T PRK02862          3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN--------SG---INKIYVLTQFNSASLNRHI   68 (429)
T ss_pred             cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH--------CC---CCEEEEEecCCHHHHHHHH
Confidence            68899999999999974   899999999   898 999999988853        34   6667777778899999999


Q ss_pred             HHcCCCCCCCCc-EEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcc
Q psy10030        185 ERNGYFGLDPAH-VIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV  263 (484)
Q Consensus       185 ~~~~~fgl~~~~-v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~  263 (484)
                      .+...++..... +..+...              ....-...+.|+||.+.....     .+....-++++|.++|++. 
T Consensus        69 ~~~~~~~~~~~g~~~i~~~~--------------~~~~~~~~~lGTa~al~~a~~-----~l~~~~~~~~lVl~gD~l~-  128 (429)
T PRK02862         69 SQTYNFDGFSGGFVEVLAAQ--------------QTPENPSWFQGTADAVRKYLW-----HFQEWDVDEYLILSGDQLY-  128 (429)
T ss_pred             hcCcCccccCCCEEEEeCCc--------------ccCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecCCEEE-
Confidence            864222210000 1100000              000001123799998876542     3333334789999999964 


Q ss_pred             ccCCHHHHHHHHHcCCceEEEEEEccC-CCcccceEEEE-CCeEEEEEeccCCccccc-cc---c-----cC-CCccccc
Q psy10030        264 KVGDPTFLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNV-DGKHKIVEYSELGNCSVF-ET---Q-----DQ-TGRLKFN  331 (484)
Q Consensus       264 ~~~Dp~~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~-~g~~~vvEyse~~~e~~~-~~---~-----~~-~g~~~f~  331 (484)
                      ...--.++.+|.+.++++++-+.+... .....|++... +|+  +.++.|-|..... ..   +     +. +-...-.
T Consensus       129 ~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~--V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~  206 (429)
T PRK02862        129 RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGR--ITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPY  206 (429)
T ss_pred             eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCc--EEEEEECCCccccchhcccccccccccccCCCCce
Confidence            322234778888888888776654321 12357887654 343  3334333321000 00   0     00 0000112


Q ss_pred             ccceeeeeecHHHHHHHh
Q psy10030        332 LGSICNHYFSLECLQRMV  349 (484)
Q Consensus       332 ~~Ni~~~~~~l~~l~~~~  349 (484)
                      ..|+..++|+-+.|.++.
T Consensus       207 ~~n~Giyi~~~~vl~~~l  224 (429)
T PRK02862        207 LASMGIYVFSRDVLFDLL  224 (429)
T ss_pred             EEEEEEEEEcHHHHHHHH
Confidence            568889999999887665

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.02  E-value=7.4e-09  Score=102.26  Aligned_cols=202  Identities=17%  Similarity=0.160  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      .+||||||.||||+.   ..||+++|+   .|++++++.++.+..        .|   +.-+++...+..+.+.++|.+.
T Consensus         2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~--------~g---i~~v~iv~~~~~~~i~~~~~~~   67 (260)
T TIGR01099         2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE--------AG---IEDILIVTGRGKRAIEDHFDTS   67 (260)
T ss_pred             eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh--------CC---CCEEEEEeCCcHHHHHHHhccc
Confidence            479999999999975   789999999   799999999887753        34   6556666667788899998742


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCccc--ccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEIL--LETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~--l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      ..++..   +  -.++.+..++.-..+.  ..-.+.....|.|+|+.+.....     .+   +-+.++|+++|+++...
T Consensus        68 ~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~-----~~---~~~~~lv~~gD~~~~~~  134 (260)
T TIGR01099        68 YELEHQ---L--EKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEP-----FV---GDEPFAVILGDDIVVSE  134 (260)
T ss_pred             HHHHHH---H--HhhhhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHH-----hh---CCCCEEEEeccceecCC
Confidence            111000   0  0000000000000000  00001112347899997765432     12   44678999999996432


Q ss_pred             --CCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE---CCeEEEEEeccCCcccccccccCCCcccccccceeeee
Q psy10030        266 --GDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV---DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY  339 (484)
Q Consensus       266 --~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~---~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~  339 (484)
                        .--.++-+|.++++++ +-+.... ....+.|++...   ++.-.|+++.|-|..+.  .       .-...|++.++
T Consensus       135 ~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~--~-------~~~~~~~Giyi  204 (260)
T TIGR01099       135 EPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEE--A-------PSNLAIVGRYV  204 (260)
T ss_pred             cHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCC--C-------CCceEEEEEEE
Confidence              1234677777778875 2222221 123467887653   12234555554442101  0       01246788999


Q ss_pred             ecHHHHHHHh
Q psy10030        340 FSLECLQRMV  349 (484)
Q Consensus       340 ~~l~~l~~~~  349 (484)
                      |+-+.+..+.
T Consensus       205 ~~~~~~~~l~  214 (260)
T TIGR01099       205 LTPDIFDLLE  214 (260)
T ss_pred             CCHHHHHHHH
Confidence            9987766653

Built to distinquish between the highly similar genes galU and galF

>KOG2388|consensus

Probab=99.02  E-value=1e-10  Score=122.25  Aligned_cols=107  Identities=28%  Similarity=0.485  Sum_probs=78.6

Q ss_pred             CChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----------cc
Q psy10030          9 VDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----------QV   77 (484)
Q Consensus         9 ~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----------~p   77 (484)
                      .+++.+.+|+.+|++.|++|+|||+++|||||||||+++|||+|++|++.  +.+++++++.+.-.+           .-
T Consensus        77 ~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~--~~slf~~qae~il~lq~~a~~~~~~~~~  154 (477)
T KOG2388|consen   77 RGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPS--GKSLFQIQAERILKLQELASMAVSDGVD  154 (477)
T ss_pred             cCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCcc--ccchhhhhHHHHHHHHHHHhhhhccCCc
Confidence            36677777999999999999999999999999999999999999999984  565655544222221           34


Q ss_pred             CCCCcccCCCCCChhhHHHHHHh---ch-----hcccCCCEEEEEEcCC
Q psy10030         78 FPPNCLSGVNTVDASTLGKYREL---GL-----KLISRGDVAVIVLAGG  118 (484)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~---G~-----~~i~~gkvavviLaGG  118 (484)
                      +||.+|.+..+ .+..++.++..   |+     ....+|+++++-+.|.
T Consensus       155 I~w~ImtS~~T-~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk  202 (477)
T KOG2388|consen  155 IPWYIMTSAFT-HEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGK  202 (477)
T ss_pred             eEEEEecCCCc-cHHhHhHHhhcCCCCCChhHeeeeecccccccccCCc
Confidence            68888887654 33344444421   33     3567788888877766

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.02  E-value=4.2e-08  Score=105.17  Aligned_cols=183  Identities=20%  Similarity=0.246  Sum_probs=117.3

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.||||+...||.|+|+   .++|++++.++.+.+        .|   +.-+++...+..+.+.++|.+..
T Consensus         3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~--------~g---i~~iiiv~~~~~~~i~~~~~~~~   68 (459)
T PRK14355          3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAARE--------AG---AGRIVLVVGHQAEKVREHFAGDG   68 (459)
T ss_pred             cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHh--------cC---CCeEEEEECCCHHHHHHHhccCC
Confidence            57889999999999998899999999   899999998888754        23   54455555566777888876421


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-  267 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-  267 (484)
                             .+.+..|.                     .|.|+|+.+.....     .+ +...++++|++.|+++....| 
T Consensus        69 -------~i~~~~~~---------------------~~~Gt~~al~~a~~-----~l-~~~~~~vlv~~gD~p~~~~~~i  114 (459)
T PRK14355         69 -------DVSFALQE---------------------EQLGTGHAVACAAP-----AL-DGFSGTVLILCGDVPLLRAETL  114 (459)
T ss_pred             -------ceEEEecC---------------------CCCCHHHHHHHHHH-----Hh-hccCCcEEEEECCccCcCHHHH
Confidence                   23332332                     25688886665432     22 222578999999997533333 


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      -.++..+...++++++.+.+..+| ...|++... +|+  ++++.|-++..-++.       .....|++.++|+-+++.
T Consensus       115 ~~l~~~~~~~~~~~~v~~~~~~~~-~~~g~v~~d~~g~--v~~~~ek~~~~~~~~-------~~~~~~~Giy~~~~~~l~  184 (459)
T PRK14355        115 QGMLAAHRATGAAVTVLTARLENP-FGYGRIVRDADGR--VLRIVEEKDATPEER-------SIREVNSGIYCVEAAFLF  184 (459)
T ss_pred             HHHHHHHHhcCCcEEEEEEEcCCC-CcCCEEEEcCCCC--EEEEEEcCCCChhHh-------hccEEEEEEEEEeHHHHH
Confidence            335666666778877766666556 467886543 343  444443222100110       123568889999988765


Q ss_pred             HHh
Q psy10030        347 RMV  349 (484)
Q Consensus       347 ~~~  349 (484)
                      +.+
T Consensus       185 ~~l  187 (459)
T PRK14355        185 DAI  187 (459)
T ss_pred             HHH
Confidence            544

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.00  E-value=1.1e-08  Score=100.51  Aligned_cols=169  Identities=24%  Similarity=0.329  Sum_probs=122.6

Q ss_pred             EEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030        112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       112 vviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~  187 (484)
                      .||||||.||||.   ...||.++||   -+||++++-++.+..        -|   |. +.|.++..+....++++.+.
T Consensus         3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~--------aG---I~dI~II~~~~~~~~~~~llGdg   68 (286)
T COG1209           3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML--------AG---IRDILIVVGPEDKPTFKELLGDG   68 (286)
T ss_pred             cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH--------cC---CceEEEEecCCchhhhhhhhcCc
Confidence            5899999999986   4899999999   999999999998864        24   44 45556666788889999998


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                      +.||++   +++-.|+.                     |.|=+.++..-.      ++  .|-+-+.++-+||++-. .-
T Consensus        69 s~~gv~---itY~~Q~~---------------------p~GlA~Av~~a~------~f--v~~~~f~l~LGDNi~~~-~l  115 (286)
T COG1209          69 SDFGVD---ITYAVQPE---------------------PDGLAHAVLIAE------DF--VGDDDFVLYLGDNIFQD-GL  115 (286)
T ss_pred             cccCcc---eEEEecCC---------------------CCcHHHHHHHHH------hh--cCCCceEEEecCceecc-Ch
Confidence            999966   77667766                     889888887443      33  46688899999999865 44


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCe-EEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGK-HKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~-~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      ..++-.+.+.+.+..+-+.+..+| +++||+... +|+ ..++|=-+.|+.              +++=+..++|+-
T Consensus       116 ~~~~~~~~~~~~ga~i~~~~V~dP-~rfGV~e~d~~~~v~~l~EKP~~P~S--------------NlAvtGlY~~d~  177 (286)
T COG1209         116 SELLEHFAEEGSGATILLYEVDDP-SRYGVVEFDEDGKVIGLEEKPKEPKS--------------NLAVTGLYFYDP  177 (286)
T ss_pred             HHHHHHHhccCCCcEEEEEEcCCc-ccceEEEEcCCCcEEEeEECCCCCCC--------------ceeEEEEEEeCh
Confidence            556666666566666666666666 588998766 564 345564444443              344456667764

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.00  E-value=1.7e-08  Score=99.55  Aligned_cols=190  Identities=21%  Similarity=0.189  Sum_probs=117.0

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||.||||+.   +.||+|+||   .+++++++.++.+..        .|   +.-++....+..+.+++|+++..
T Consensus         1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~--------~g---i~~i~iv~~~~~~~i~~~~~~~~   66 (253)
T cd02524           1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH--------YG---HNDFILCLGYKGHVIKEYFLNYF   66 (253)
T ss_pred             CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh--------CC---CceEEEECCCCHHHHHHHHHhhh
Confidence            48999999999974   789999999   899999987777753        34   77777788889999999998864


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcc----eeccCCCchHhHHHhhcChHHHHHHcCC-eEEEEEeCCCCcc
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRV----ARSPDGHGGLYHALGATGILDTMHTRGI-KHIHVYCVDNILV  263 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i----~~~P~G~Ggi~~~L~~~G~l~~l~~~G~-~~i~v~~vDN~l~  263 (484)
                      .+|.+   +.+-.|..--.+...    ..+++.+    ...|.|+||.+....+.        .+. ++++|++.|++..
T Consensus        67 ~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~~al~~a~~~--------~~~~~~~lv~~gD~i~~  131 (253)
T cd02524          67 LHNSD---VTIDLGTNRIELHNS----DIEDWKVTLVDTGLNTMTGGRLKRVRRY--------LGDDETFMLTYGDGVSD  131 (253)
T ss_pred             hhcCc---eeEeecccceeeecc----cccccceeecccCcccccHHHHHHHHHh--------cCCCCeEEEEcCCEEEC
Confidence            44422   222111100000000    0001111    12367888876644321        233 7899999999863


Q ss_pred             ccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        264 KVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       264 ~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                       ..--.++-+|...++++++.++.   +....|++... +|  +|.++.+-+..  .          -...|++.++|+-
T Consensus       132 -~dl~~ll~~h~~~~~~~tl~~~~---~~~~~g~v~~d~~g--~V~~~~ekp~~--~----------~~~i~~Giyi~~~  193 (253)
T cd02524         132 -VNINALIEFHRSHGKLATVTAVH---PPGRFGELDLDDDG--QVTSFTEKPQG--D----------GGWINGGFFVLEP  193 (253)
T ss_pred             -CCHHHHHHHHHHcCCCEEEEEec---CCCcccEEEECCCC--CEEEEEECCCC--C----------CceEEEEEEEECH
Confidence             33344677777888888876653   33467886543 34  34444433221  0          0135677889987


Q ss_pred             HHHHHH
Q psy10030        343 ECLQRM  348 (484)
Q Consensus       343 ~~l~~~  348 (484)
                      +.++.+
T Consensus       194 ~l~~~l  199 (253)
T cd02524         194 EVFDYI  199 (253)
T ss_pred             HHHHhh
Confidence            766444

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=98.97  E-value=2.3e-08  Score=101.73  Aligned_cols=195  Identities=16%  Similarity=0.155  Sum_probs=118.4

Q ss_pred             EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+|+||||.||||+.   ..||.++|+   .|++++++.++.+..        .|   +--++....+..+.+.++|..
T Consensus         9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~--------~g---i~~i~vv~~~~~~~i~~~~~~   74 (302)
T PRK13389          9 KKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA--------AG---ITEIVLVTHSSKNSIENHFDT   74 (302)
T ss_pred             eEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEeCCCHHHHHHHHcc
Confidence            5689999999999975   799999999   899999999988864        34   666777778888999999975


Q ss_pred             cCCCC--CCCC-cEEEEEcCCccccccCCcccccC----CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCC
Q psy10030        187 NGYFG--LDPA-HVIFFKQRSMPCFSLSGEILLET----RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVD  259 (484)
Q Consensus       187 ~~~fg--l~~~-~v~~f~Q~~~P~~~~~g~~~l~~----~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vD  259 (484)
                      ...++  +.+. +..+ .++        -..+.+.    .......|.|+|+++.....      +  .+-+.++|+++|
T Consensus        75 ~~~~~~~l~~~~~~~~-~~e--------~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~------~--~~~~~~lVl~gD  137 (302)
T PRK13389         75 SFELEAMLEKRVKRQL-LDE--------VQSICPPHVTIMQVRQGLAKGLGHAVLCAHP------V--VGDEPVAVILPD  137 (302)
T ss_pred             chhhhhhhhhhhhhHH-HHh--------hhhccccCceEEEeecCCCCChHHHHHHHHH------H--cCCCCEEEEeCc
Confidence            32221  1100 0000 000        0000000    01112457899998775432      2  233568999999


Q ss_pred             CCcc------ccCC-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEEC-----Ce-EEEEEeccCCcccccccccCCC
Q psy10030        260 NILV------KVGD-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD-----GK-HKIVEYSELGNCSVFETQDQTG  326 (484)
Q Consensus       260 N~l~------~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~-----g~-~~vvEyse~~~e~~~~~~~~~g  326 (484)
                      |++.      ...| -.++.+|.+.+++ ++-+.+.. ...++|++...+     |+ -.++++-|-|..+...      
T Consensus       138 ~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~-~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~------  209 (302)
T PRK13389        138 VILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVA-DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAP------  209 (302)
T ss_pred             ceecccccccccccHHHHHHHHHhcCCC-EEEEEEcc-cCCcceEEEecCcccccCCcceEEEEEECCCCCCCC------
Confidence            9862      1123 3477778777776 44455544 345789987542     21 2344554444320000      


Q ss_pred             cccccccceeeeeecHHHHH
Q psy10030        327 RLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       327 ~~~f~~~Ni~~~~~~l~~l~  346 (484)
                         -+..|+..++|+-+.++
T Consensus       210 ---s~~~~~GiYi~~~~il~  226 (302)
T PRK13389        210 ---SNLAIVGRYVLSADIWP  226 (302)
T ss_pred             ---ccEEEEEEEEECHHHHH
Confidence               02468889999987663

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.97  E-value=1.8e-08  Score=108.75  Aligned_cols=183  Identities=18%  Similarity=0.158  Sum_probs=114.8

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHHc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~~  187 (484)
                      .+++|+||||.||||+.+.||.|+|+   .++|++++.++.+.+        .|   + .+++.++ +..+.+.+++++.
T Consensus         4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~--------~g---~~~iivvv~-~~~~~i~~~~~~~   68 (482)
T PRK14352          4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAG--------LA---PQHLVVVVG-HDRERVAPAVAEL   68 (482)
T ss_pred             CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHh--------cC---CCcEEEEEC-CCHHHHHHHhhcc
Confidence            57889999999999998899999999   899999999998864        23   4 4445444 5567787777642


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                         +.   .+.+..|                     ..|.|+|+.+.+...     .+.+..-++++|+++|+++....+
T Consensus        69 ---~~---~~~~~~~---------------------~~~~Gt~~si~~al~-----~l~~~~~~~vlV~~gD~P~~~~~~  116 (482)
T PRK14352         69 ---AP---EVDIAVQ---------------------DEQPGTGHAVQCALE-----ALPADFDGTVVVTAGDVPLLDGET  116 (482)
T ss_pred             ---CC---ccEEEeC---------------------CCCCCcHHHHHHHHH-----HhccCCCCeEEEEeCCeeccCHHH
Confidence               11   1222222                     236788775543322     222223578999999998532222


Q ss_pred             H-HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030        268 P-TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC  344 (484)
Q Consensus       268 p-~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~  344 (484)
                      . .++-.+...+.++++.+.+..+| ..+|.+... +|+. .++|..+.+..   +       +..+..|++.++|+-+.
T Consensus       117 l~~li~~~~~~~~~~~v~~~~~~~p-~~yg~~~~~~~g~V~~~~EKp~~~~~---~-------~~~~~~~~Giy~f~~~~  185 (482)
T PRK14352        117 LADLVATHTAEGNAVTVLTTTLDDP-TGYGRILRDQDGEVTAIVEQKDATPS---Q-------RAIREVNSGVYAFDAAV  185 (482)
T ss_pred             HHHHHHHHHhcCCeEEEEEeecCCC-CCCCEEEECCCCCEEEEEECCCCCHH---H-------hhcceEEEEEEEEEHHH
Confidence            2 24555555677766655555544 467877653 4543 34444333222   0       11234688899999988


Q ss_pred             HHHHh
Q psy10030        345 LQRMV  349 (484)
Q Consensus       345 l~~~~  349 (484)
                      |.++.
T Consensus       186 l~~~~  190 (482)
T PRK14352        186 LRSAL  190 (482)
T ss_pred             HHHHH
Confidence            87765

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=98.93  E-value=3.5e-08  Score=95.07  Aligned_cols=178  Identities=20%  Similarity=0.218  Sum_probs=109.0

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHcCCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERNGYF  190 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~~~f  190 (484)
                      +|+||||.||||+...||.++|+   .|+|++++.++.+..        .|   +. .+|.++ +.++.+.+++.+   +
T Consensus         1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~--------~~---i~~i~iv~~-~~~~~i~~~~~~---~   62 (229)
T cd02540           1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARA--------LG---PDRIVVVVG-HGAEQVKKALAN---P   62 (229)
T ss_pred             CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHh--------CC---CCeEEEEEC-CCHHHHHHHhCC---C
Confidence            48999999999998889999999   899999998888754        23   33 445554 447778777764   2


Q ss_pred             CCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH-H
Q psy10030        191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP-T  269 (484)
Q Consensus       191 gl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp-~  269 (484)
                      +     +.++.|.                     .+.|+++.......     .+ +.+.+++++++.|+++....+- .
T Consensus        63 ~-----~~~~~~~---------------------~~~g~~~ai~~a~~-----~~-~~~~~~vli~~~D~p~~~~~~i~~  110 (229)
T cd02540          63 N-----VEFVLQE---------------------EQLGTGHAVKQALP-----AL-KDFEGDVLVLYGDVPLITPETLQR  110 (229)
T ss_pred             C-----cEEEECC---------------------CCCCCHHHHHHHHH-----hh-ccCCCeEEEEeCCccccCHHHHHH
Confidence            3     3333332                     13577776554322     22 2236889999999975321111 1


Q ss_pred             HHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030        270 FLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM  348 (484)
Q Consensus       270 ~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~  348 (484)
                      ++..+.+.++++++-+.+..+| ...|.+... +|+  ++++.+-+....++       ......|++.++|+.+.+.+.
T Consensus       111 l~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~--v~~~~ek~~~~~~~-------~~~~~~~~giy~~~~~~~~~~  180 (229)
T cd02540         111 LLEAHREAGADVTVLTAELEDP-TGYGRIIRDGNGK--VLRIVEEKDATEEE-------KAIREVNAGIYAFDAEFLFEA  180 (229)
T ss_pred             HHHHHHhcCCcEEEEEEEcCCC-CCccEEEEcCCCC--EEEEEECCCCChHH-------HhhceEEeEEEEEEHHHHHHH
Confidence            3344455567787777776666 456776544 354  33433322110001       011356888999998766554


Q ss_pred             h
Q psy10030        349 V  349 (484)
Q Consensus       349 ~  349 (484)
                      .
T Consensus       181 l  181 (229)
T cd02540         181 L  181 (229)
T ss_pred             H
Confidence            4

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=98.92  E-value=2.9e-08  Score=94.41  Aligned_cols=139  Identities=17%  Similarity=0.246  Sum_probs=93.1

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      +|+||||.||||..   +.||+|+||   .|+ |++++.++.+..        .|   +--+++...+..+.+.++|.+.
T Consensus         1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~--------~g---i~~iivv~~~~~~~i~~~~~~~   66 (200)
T cd02508           1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN--------SG---IRNVGVLTQYKSRSLNDHLGSG   66 (200)
T ss_pred             CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH--------CC---CCEEEEEeCCChHHHHHHHhCC
Confidence            48999999999973   799999999   888 999999888864        34   5555555567789999999876


Q ss_pred             CCCCCCC--CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        188 GYFGLDP--AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       188 ~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      ..++++.  ..+.....               .....+..|.|+|+.+.....     .+....-+.++|.++|++. ..
T Consensus        67 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD~v~-~~  125 (200)
T cd02508          67 KEWDLDRKNGGLFILPP---------------QQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGDHIY-NM  125 (200)
T ss_pred             CcccCCCCCCCEEEeCc---------------ccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCCEEE-ec
Confidence            6666541  11211110               000023457899998876543     2333345789999999963 33


Q ss_pred             CCHHHHHHHHHcCCceEEEE
Q psy10030        266 GDPTFLGYCVEQGAHCGVKV  285 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~~~~~v  285 (484)
                      .--.++.+|.+++.++++-+
T Consensus       126 ~~~~~l~~~~~~~~~~t~~~  145 (200)
T cd02508         126 DYREMLDFHIESGADITVVY  145 (200)
T ss_pred             CHHHHHHHHHHcCCCEEEEE
Confidence            33346777777777665533

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=98.92  E-value=3.6e-08  Score=97.87  Aligned_cols=196  Identities=17%  Similarity=0.196  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      .+||||||.||||+.   ..||+++||   .|++++++.++.+.+        .|   +.-+++...+..+.+.++|...
T Consensus         2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~~   67 (267)
T cd02541           2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA--------AG---IEDIIIVTGRGKRAIEDHFDRS   67 (267)
T ss_pred             eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEeCCchHHHHHHhCCc
Confidence            479999999999974   789999999   799999999988863        34   6566666777888899888642


Q ss_pred             CCCCCCCCcEEEEEcC----Cccccc--cCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030        188 GYFGLDPAHVIFFKQR----SMPCFS--LSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNI  261 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~----~~P~~~--~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~  261 (484)
                      .  .++. ++   .+.    .+|-+.  ..+   +.-....+..|.|+|+.+.....      ..  +.+.++|+++|++
T Consensus        68 ~--~~~~-~~---~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~Gt~~al~~~~~------~i--~~~~~lv~~gD~~  130 (267)
T cd02541          68 Y--ELEE-TL---EKKGKTDLLEEVRIISDL---ANIHYVRQKEPLGLGHAVLCAKP------FI--GDEPFAVLLGDDL  130 (267)
T ss_pred             H--HHHH-HH---HhcccHHHhhhhhcccCC---ceEEEEEcCCCCChHHHHHHHHH------Hh--CCCceEEEECCeE
Confidence            1  1100 00   000    000000  000   00001123447899888765543      12  2267899999998


Q ss_pred             ccccCC---HHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEEC--C-eEEEEEeccCCcccccccccCCCcccccccc
Q psy10030        262 LVKVGD---PTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVD--G-KHKIVEYSELGNCSVFETQDQTGRLKFNLGS  334 (484)
Q Consensus       262 l~~~~D---p~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~--g-~~~vvEyse~~~e~~~~~~~~~g~~~f~~~N  334 (484)
                      +. ..|   -.++..|...++++ +-+.... ....+.|++...+  | ...|.++.|-|..+.     .    .-...|
T Consensus       131 ~~-~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~-----~----~~~~~~  199 (267)
T cd02541         131 ID-SKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEE-----A----PSNLAI  199 (267)
T ss_pred             Ee-CCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCC-----C----CCceEE
Confidence            63 222   24677776666664 2222221 1234678876542  2 234555554433200     0    012457


Q ss_pred             eeeeeecHHHHHHH
Q psy10030        335 ICNHYFSLECLQRM  348 (484)
Q Consensus       335 i~~~~~~l~~l~~~  348 (484)
                      ++.++|+-+.+..+
T Consensus       200 ~Giyi~~~~~~~~l  213 (267)
T cd02541         200 VGRYVLTPDIFDIL  213 (267)
T ss_pred             EEEEEcCHHHHHHH
Confidence            88899998876655

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=98.90  E-value=2.5e-08  Score=99.96  Aligned_cols=192  Identities=18%  Similarity=0.175  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCcccc----ccCCCccccccCCCC-CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLG----ADYPKGMYNIGLPSG-KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       111 avviLaGG~GTRLG----~~~PKg~~~i~l~~~-~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      .+||||||.||||.    ...||.++|+   .| +|++|+.++++..+.       +  .-.++|+|+....+.+.++++
T Consensus         2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~~-------~--~~~i~vvt~~~~~~~v~~~l~   69 (274)
T cd02509           2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGLV-------P--PDRILVVTNEEYRFLVREQLP   69 (274)
T ss_pred             EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcCC-------C--CCcEEEEechHHHHHHHHHHh
Confidence            47999999999995    4789999999   56 999999999886421       1  126777787666667777776


Q ss_pred             HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc-CCeEEEEEeCCCCccc
Q psy10030        186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR-GIKHIHVYCVDNILVK  264 (484)
Q Consensus       186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~-G~~~i~v~~vDN~l~~  264 (484)
                      +   .+ .  .+.++.                     +..+.|+++.......     .+.++ +-++++|++.|.++..
T Consensus        70 ~---~~-~--~~~ii~---------------------ep~~~gTa~ai~~a~~-----~~~~~~~~~~vlVl~~D~~i~~  117 (274)
T cd02509          70 E---GL-P--EENIIL---------------------EPEGRNTAPAIALAAL-----YLAKRDPDAVLLVLPSDHLIED  117 (274)
T ss_pred             h---cC-C--CceEEE---------------------CCCCCCcHHHHHHHHH-----HHHhcCCCCeEEEecchhcccC
Confidence            5   11 1  122222                     2336789887765432     22222 3578999999998531


Q ss_pred             cCCH-HHHHHHH---HcCCceEEEEEEccCCCcccceEEEECC----eEEEEEeccCCcccccccccCCCccccccccee
Q psy10030        265 VGDP-TFLGYCV---EQGAHCGVKVVEKITPGESLGVLCNVDG----KHKIVEYSELGNCSVFETQDQTGRLKFNLGSIC  336 (484)
Q Consensus       265 ~~Dp-~~lg~~~---~~~~~~~~~vv~k~~~~e~~G~l~~~~g----~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~  336 (484)
                      ..+- ..+-.+.   +.+..+++-+.+. .|...+|.+...+.    -..|..+.|-|+...++..-.+|.   ...|..
T Consensus       118 ~~~f~~~l~~~~~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~---~~wNsG  193 (274)
T cd02509         118 VEAFLKAVKKAVEAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGN---YLWNSG  193 (274)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCC---eEEECc
Confidence            1111 1232222   2567777777765 47778899876422    235666666665422221111121   256899


Q ss_pred             eeeecHHHHHHHhh
Q psy10030        337 NHYFSLECLQRMVK  350 (484)
Q Consensus       337 ~~~~~l~~l~~~~~  350 (484)
                      +++|+.+.+.+.++
T Consensus       194 iyi~~~~~l~~~l~  207 (274)
T cd02509         194 IFLFRAKTFLEELK  207 (274)
T ss_pred             eeeeeHHHHHHHHH
Confidence            99999987766654

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.88  E-value=6.7e-08  Score=102.98  Aligned_cols=181  Identities=17%  Similarity=0.183  Sum_probs=112.7

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.||||+.+.||.++|+   .|+|++++.++.+..        .|   +.-+++...+.++.+.+++.+  
T Consensus         5 ~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~--------~g---i~~ivvv~~~~~~~i~~~~~~--   68 (446)
T PRK14353          5 TCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAAS--------LG---PSRVAVVVGPGAEAVAAAAAK--   68 (446)
T ss_pred             cceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHh--------CC---CCcEEEEECCCHHHHHHHhhc--
Confidence            67899999999999998889999999   899999999988864        23   444454555667778887754  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       ++.   ++.++.|+                     .|.|+++.+.+..     +.+ ..+.++++|++.|.++.   ++
T Consensus        69 -~~~---~~~~~~~~---------------------~~~G~~~sl~~a~-----~~l-~~~~~~~lv~~~D~P~i---~~  114 (446)
T PRK14353         69 -IAP---DAEIFVQK---------------------ERLGTAHAVLAAR-----EAL-AGGYGDVLVLYGDTPLI---TA  114 (446)
T ss_pred             -cCC---CceEEEcC---------------------CCCCcHHHHHHHH-----HHH-hccCCCEEEEeCCcccC---CH
Confidence             221   12222221                     2567766555432     222 23457899999999753   44


Q ss_pred             HHHHHH---HHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        269 TFLGYC---VEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       269 ~~lg~~---~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      ..+-.+   .+.+.+.++.+.+..++ .++|.+...+|+  ++++.|-++. ....      ..-...|++.++|+.+.+
T Consensus       115 ~~l~~l~~~~~~~~~~~i~~~~~~~~-~~~g~~~~~~g~--v~~~~ek~~~-~~~~------~~~~~~~~Giy~~~~~~l  184 (446)
T PRK14353        115 ETLARLRERLADGADVVVLGFRAADP-TGYGRLIVKGGR--LVAIVEEKDA-SDEE------RAITLCNSGVMAADGADA  184 (446)
T ss_pred             HHHHHHHHhHhcCCcEEEEEEEeCCC-CcceEEEECCCe--EEEEEECCCC-ChHH------hhceEEEEEEEEEEHHHH
Confidence            444333   24567777777765544 467877665554  4454443322 1000      001245778889988766


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      .++.
T Consensus       185 ~~~l  188 (446)
T PRK14353        185 LALL  188 (446)
T ss_pred             HHHH
Confidence            4443

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=98.84  E-value=9.1e-08  Score=93.56  Aligned_cols=183  Identities=18%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      |+++|+||||.++||+   +|.++|+   .|+|++++.++.+...        |   +..+++.+.  ++.+.+++.+  
T Consensus         2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~--------~---i~~ivvv~~--~~~i~~~~~~--   60 (245)
T PRK05450          2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA--------G---ADRVVVATD--DERIADAVEA--   60 (245)
T ss_pred             ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc--------C---CCeEEEECC--cHHHHHHHHH--
Confidence            5789999999999995   7999999   8999999999988642        3   555566553  4778888864  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       +|.+   +.+..|                     ..+.|++++..++..      +...+.++++++++|+++.   ++
T Consensus        61 -~~~~---v~~~~~---------------------~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pli---~~  106 (245)
T PRK05450         61 -FGGE---VVMTSP---------------------DHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPLI---PP  106 (245)
T ss_pred             -cCCE---EEECCC---------------------cCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCCC---CH
Confidence             3422   221111                     225677776654332      2112357899999999863   44


Q ss_pred             HHH----HHHHHcCCceEEEEEEccC-----CCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeee
Q psy10030        269 TFL----GYCVEQGAHCGVKVVEKIT-----PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY  339 (484)
Q Consensus       269 ~~l----g~~~~~~~~~~~~vv~k~~-----~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~  339 (484)
                      ..+    ..+..++.++.+-++++.+     ..+.+|++...+|+.  +++.+-+.-...+..+ +....-...|++.+.
T Consensus       107 ~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v--~~~~e~~~~~~~~~~~-~~~~~~~~~~~Giy~  183 (245)
T PRK05450        107 EIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRA--LYFSRAPIPYGRDAFA-DSAPTPVYRHIGIYA  183 (245)
T ss_pred             HHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcE--EEecCCCCCCCCCccc-cccCccccEEEEEEe
Confidence            444    3333346777776766622     223456553334443  4555443210110000 000122468999999


Q ss_pred             ecHHHHHHHh
Q psy10030        340 FSLECLQRMV  349 (484)
Q Consensus       340 ~~l~~l~~~~  349 (484)
                      |+-+.++.+.
T Consensus       184 ~~~~~l~~~~  193 (245)
T PRK05450        184 YRRGFLRRFV  193 (245)
T ss_pred             cCHHHHHHHH
Confidence            9998888876

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.79  E-value=1.5e-07  Score=97.65  Aligned_cols=197  Identities=19%  Similarity=0.281  Sum_probs=118.6

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      +|+||||.||||+.   +.||+|+|+   .|+ +++++.++.+..        .|   +.-+++...+..+.+.++|.+.
T Consensus         1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~~   66 (361)
T TIGR02091         1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCIN--------SG---IRRIGVLTQYKSHSLNRHIQRG   66 (361)
T ss_pred             CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhh--------cC---CceEEEEeccChHHHHHHHHhc
Confidence            48999999999975   789999999   888 799999888864        34   6666777778888899999853


Q ss_pred             CCCCCCC---CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        188 GYFGLDP---AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       188 ~~fgl~~---~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                        +++..   ..+.++....              .......|.|+|+.+....     +.+....-++++|+++|++. .
T Consensus        67 --~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~gD~l~-~  124 (361)
T TIGR02091        67 --WDFDGFIDGFVTLLPAQQ--------------RESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSGDHIY-K  124 (361)
T ss_pred             --cCccCccCCCEEEeCCcc--------------cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEE-c
Confidence              33321   1121111000              0011234689988776432     22222334789999999964 3


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ..-..++-.|..++.++++-+.+.. ...+.+|++...+ .-.+.++.+-+.. ..   +..+.......|++.+.|+-+
T Consensus       125 ~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-~~~v~~~~ekp~~-~~---~~~~~~~~~~~~~Giyi~~~~  199 (361)
T TIGR02091       125 MDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE-DGRIVDFEEKPAN-PP---SIPGMPDFALASMGIYIFDKD  199 (361)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECC-CCCEEEEEECCCC-cc---cccccccccEEeeeEEEEcHH
Confidence            2223466777777777665554432 1234678877543 2234555543321 10   001111123578999999988


Q ss_pred             HHHHHh
Q psy10030        344 CLQRMV  349 (484)
Q Consensus       344 ~l~~~~  349 (484)
                      .|.++.
T Consensus       200 ~l~~~l  205 (361)
T TIGR02091       200 VLKELL  205 (361)
T ss_pred             HHHHHH
Confidence            875543

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=98.78  E-value=5.1e-07  Score=87.95  Aligned_cols=182  Identities=17%  Similarity=0.170  Sum_probs=108.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.++||+   ||.++++   .|+|++++.++++++.       -|   +.-+++.+.  ++.+.+++.+  
T Consensus         1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~-------~~---i~~ivvv~~--~~~i~~~~~~--   60 (239)
T cd02517           1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA-------KG---LDEVVVATD--DERIADAVES--   60 (239)
T ss_pred             CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC-------CC---CCEEEEECC--cHHHHHHHHH--
Confidence            4678999999999996   7999999   8999999999988641       03   666666654  4788888865  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       ++++   +  ..+.                   ...+.|+|++..++..      + ....++++++++|+++....+.
T Consensus        61 -~~~~---~--~~~~-------------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli~~~~l  108 (239)
T cd02517          61 -FGGK---V--VMTS-------------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLIPPEMI  108 (239)
T ss_pred             -cCCE---E--EEcC-------------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCCCHHHH
Confidence             3322   2  1111                   1225678776665421      2 1124789999999986422221


Q ss_pred             -HHHHHHHHc-CCceEEEEEEccCCC-----cccceEEEECCeEEEEEeccCC-cccccccccCCCcccccccceeeeee
Q psy10030        269 -TFLGYCVEQ-GAHCGVKVVEKITPG-----ESLGVLCNVDGKHKIVEYSELG-NCSVFETQDQTGRLKFNLGSICNHYF  340 (484)
Q Consensus       269 -~~lg~~~~~-~~~~~~~vv~k~~~~-----e~~G~l~~~~g~~~vvEyse~~-~e~~~~~~~~~g~~~f~~~Ni~~~~~  340 (484)
                       .++-.+... +.++++-+++..++.     +.+|++...+|  .+.++.+-+ ++ .+...+.    .-...|++++.|
T Consensus       109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~v~~~~~~~~~~-~~~~~~~----~~~~~~~Giy~~  181 (239)
T cd02517         109 DQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDG--YALYFSRSPIPY-PRDSSED----FPYYKHIGIYAY  181 (239)
T ss_pred             HHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCC--CEEEecCCCCCC-CCCCCCC----CceeEEEEEEEE
Confidence             133333334 567776677654433     12233333345  344554321 11 1110010    113679999999


Q ss_pred             cHHHHHHHh
Q psy10030        341 SLECLQRMV  349 (484)
Q Consensus       341 ~l~~l~~~~  349 (484)
                      +-+.++.+.
T Consensus       182 ~~~~~~~~~  190 (239)
T cd02517         182 RRDFLLRFA  190 (239)
T ss_pred             CHHHHHHHH
Confidence            999888775

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=98.77  E-value=2.1e-07  Score=90.02  Aligned_cols=173  Identities=18%  Similarity=0.197  Sum_probs=108.6

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +||||||.||||+.   ..||+++|+   .|+|++++.++.+..        .|   +.-+++...+..+.+.+++.+. 
T Consensus         1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~--------~g---i~~i~vv~~~~~~~~~~~~~~~-   65 (229)
T cd02523           1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKE--------AG---IDDIVIVTGYKKEQIEELLKKY-   65 (229)
T ss_pred             CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHH--------CC---CceEEEEeccCHHHHHHHHhcc-
Confidence            48999999999975   579999999   899999998888753        24   6666666677788888888753 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       +|     +.+..+..                   +.+.|+++.+.+...     .+    -++++|+++|++.    ++
T Consensus        66 -~~-----~~~~~~~~-------------------~~~~g~~~s~~~~~~-----~~----~~~~lv~~~D~~~----~~  107 (229)
T cd02523          66 -PN-----IKFVYNPD-------------------YAETNNIYSLYLARD-----FL----DEDFLLLEGDVVF----DP  107 (229)
T ss_pred             -CC-----eEEEeCcc-------------------hhhhCcHHHHHHHHH-----Hc----CCCEEEEeCCEec----CH
Confidence             22     32222221                   225677766554332     22    3789999999973    56


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCC-cccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPG-ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR  347 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~-e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~  347 (484)
                      .++-.+.+.+.+.++-+.+...+. ..+++.. .++ -.+++..+.+.. ..         .....|++.+.|+-+.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~k~~~-~~---------~~~~~~~Giy~~~~~~~~~  175 (229)
T cd02523         108 SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGIISKAKN-LE---------EIQGEYVGISKFSPEDADR  175 (229)
T ss_pred             HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEeecccCCC-cc---------hhceEEEeEEEECHHHHHH
Confidence            778888888888877666522121 2223221 221 122222222211 00         1124678888999888776


Q ss_pred             Hh
Q psy10030        348 MV  349 (484)
Q Consensus       348 ~~  349 (484)
                      +.
T Consensus       176 l~  177 (229)
T cd02523         176 LA  177 (229)
T ss_pred             HH
Confidence            65

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PLN02830 UDP-sugar pyrophosphorylase

Probab=98.76  E-value=5e-09  Score=114.93  Aligned_cols=103  Identities=22%  Similarity=0.306  Sum_probs=71.6

Q ss_pred             hhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc------------ccC
Q psy10030         11 ASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV------------QVF   78 (484)
Q Consensus        11 ~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~------------~p~   78 (484)
                      .....+|++.|+++|  |+|||++||||||||||.++|||++++++.  .++++.++...+...+            ..+
T Consensus       112 ~~~~~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~I  187 (615)
T PLN02830        112 SEEFVELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKI  187 (615)
T ss_pred             chhhhHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence            345578999999999  899999999999999999999999999874  4555555444333222            347


Q ss_pred             CCCcccCCCCCChhhHHHHHHhc--------hhcccCCCEEEEEEcCC
Q psy10030         79 PPNCLSGVNTVDASTLGKYRELG--------LKLISRGDVAVIVLAGG  118 (484)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~G--------~~~i~~gkvavviLaGG  118 (484)
                      |+..|.|..+ ..+...-+++..        +..+.|+++.++.-..|
T Consensus       188 Pl~IMTS~~T-~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g  234 (615)
T PLN02830        188 PLVIMTSDDT-HARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDA  234 (615)
T ss_pred             eEEEECCcch-hHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCC
Confidence            8888888754 333444444432        33456777777765433

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.76  E-value=2e-07  Score=99.72  Aligned_cols=178  Identities=17%  Similarity=0.202  Sum_probs=107.2

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~  187 (484)
                      ++.+|+||||.||||+...||.++|+   .|+|++++.++.+..        .|   +. .++.+ .+..+.+++++...
T Consensus         5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~--------~g---i~~i~vv~-~~~~~~i~~~~~~~   69 (456)
T PRK09451          5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANE--------LG---AQHVHLVY-GHGGDLLKQTLADE   69 (456)
T ss_pred             CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHh--------cC---CCcEEEEE-CCCHHHHHHhhccC
Confidence            58899999999999998899999999   899999999888753        23   43 44444 45666677666431


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                              ++.+..|                     ..+.|+++.+.....     .+  ...++++|.++|+++....+
T Consensus        70 --------~~~~i~~---------------------~~~~Gt~~al~~a~~-----~l--~~~~~vlV~~gD~P~i~~~~  113 (456)
T PRK09451         70 --------PLNWVLQ---------------------AEQLGTGHAMQQAAP-----FF--ADDEDILMLYGDVPLISVET  113 (456)
T ss_pred             --------CcEEEEC---------------------CCCCCcHHHHHHHHH-----hh--ccCCcEEEEeCCcccCCHHH
Confidence                    2222212                     136788886665332     12  13478999999997632222


Q ss_pred             HH-HHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        268 PT-FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       268 p~-~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      .. ++..+.+  ....+.+++..+| .++|++...+|+  |+++.|-+.....+       ...+..|+..++|+-+.|.
T Consensus       114 i~~l~~~~~~--~~~~i~~~~~~~~-~~yG~v~~~~g~--V~~~~EKp~~~~~~-------~~~~~~~~GiYi~~~~~l~  181 (456)
T PRK09451        114 LQRLRDAKPQ--GGIGLLTVKLDNP-TGYGRITRENGK--VVGIVEQKDATDEQ-------RQIQEINTGILVANGADLK  181 (456)
T ss_pred             HHHHHHHhhc--CCEEEEEEEcCCC-CCceEEEecCCe--EEEEEECCCCChHH-------hhccEEEEEEEEEEHHHHH
Confidence            11 2222322  2234455555555 457887544554  44444433210000       1123578889999988776


Q ss_pred             HHh
Q psy10030        347 RMV  349 (484)
Q Consensus       347 ~~~  349 (484)
                      +.+
T Consensus       182 ~~l  184 (456)
T PRK09451        182 RWL  184 (456)
T ss_pred             HHH
Confidence            654

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.70  E-value=4.7e-09  Score=107.58  Aligned_cols=42  Identities=50%  Similarity=0.812  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccH
Q psy10030         15 GKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKI   56 (484)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~   56 (484)
                      .+|++.|+++|++|++|+++||||||||||.+.||++++|+.
T Consensus         1 ~~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~   42 (323)
T cd04193           1 KEWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGL   42 (323)
T ss_pred             ChHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecC
Confidence            379999999999999999999999999999999999999985

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=98.65  E-value=9.8e-07  Score=93.93  Aligned_cols=175  Identities=18%  Similarity=0.217  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHHHHcCC
Q psy10030        111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      .+|+||||+||||+.+.||.++|+   .|+|++++.++.+..        .|   +.- +|.++ +..+.+.+++.+.  
T Consensus         2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~--------~g---~~~iiiv~~-~~~~~i~~~~~~~--   64 (451)
T TIGR01173         2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARA--------LG---PQKIHVVYG-HGAEQVRKALANR--   64 (451)
T ss_pred             eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHh--------CC---CCeEEEEEC-CCHHHHHHHhcCC--
Confidence            479999999999998899999999   899999999888753        33   444 44444 5567788877652  


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT  269 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~  269 (484)
                       +     +.++.|.                     .|.|+++.+.....     .+ + .-+++++.+.|.++.   ++.
T Consensus        65 -~-----i~~~~~~---------------------~~~G~~~ai~~a~~-----~l-~-~~~~~lv~~~D~p~i---~~~  107 (451)
T TIGR01173        65 -D-----VNWVLQA---------------------EQLGTGHAVLQALP-----FL-P-DDGDVLVLYGDVPLI---SAE  107 (451)
T ss_pred             -C-----cEEEEcC---------------------CCCchHHHHHHHHH-----hc-C-CCCcEEEEECCcCCc---CHH
Confidence             2     3223221                     24577765544322     12 1 236899999999753   343


Q ss_pred             HHHHHHH--cCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        270 FLGYCVE--QGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       270 ~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      .+.-+.+  .....++.+.+..++ .++|.+... +|+  +.++.|-++...++.       .....|++.++|+-++|.
T Consensus       108 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~g~--v~~~~ek~~~~~~~~-------~~~~~~~G~y~~~~~~l~  177 (451)
T TIGR01173       108 TLERLLEAHRQNGITLLTAKLPDP-TGYGRIIRENDGK--VTAIVEDKDANAEQK-------AIKEINTGVYVFDGAALK  177 (451)
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCC-CCCCEEEEcCCCC--EEEEEEcCCCChHHh-------cCcEEEEEEEEEeHHHHH
Confidence            3332221  112344444444433 457877643 344  334433222201010       112457888999998875


Q ss_pred             HHh
Q psy10030        347 RMV  349 (484)
Q Consensus       347 ~~~  349 (484)
                      +.+
T Consensus       178 ~~l  180 (451)
T TIGR01173       178 RWL  180 (451)
T ss_pred             HHH
Confidence            544

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.64  E-value=4.6e-07  Score=97.57  Aligned_cols=190  Identities=15%  Similarity=0.186  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCcccc----ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLG----ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       111 avviLaGG~GTRLG----~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      -+|+||||.||||+    .+.||.++++  ..++|+|++.++++..+        + .. ..+|.|+..-.+.+.+.+++
T Consensus         2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~--------~-~~-~iviv~~~~~~~~~~~~l~~   69 (468)
T TIGR01479         2 IPVILAGGSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL--------P-CS-SPLVICNEEHRFIVAEQLRE   69 (468)
T ss_pred             EEEEecCcccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC--------C-Cc-CcEEecCHHHHHHHHHHHHH
Confidence            36899999999997    3579999998  23499999999887532        2 11 33455544333345556654


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc--CCeEEEEEeCCCCccc
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR--GIKHIHVYCVDNILVK  264 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~--G~~~i~v~~vDN~l~~  264 (484)
                         +|++..++                       .++..+.|+|++.....     ..+.++  +-..++|+++|+++. 
T Consensus        70 ---~~~~~~~~-----------------------i~Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D~~i~-  117 (468)
T TIGR01479        70 ---IGKLASNI-----------------------ILEPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAADHVIT-  117 (468)
T ss_pred             ---cCCCcceE-----------------------EecccccCchHHHHHHH-----HHHHHHHCCCcEEEEecCceeec-
Confidence               34332211                       23345788988765422     112222  345799999999853 


Q ss_pred             cCCH-H---HHHHH---HHcCCceEEEEEEccCCCcccceEEEEC-----CeEEEEEeccCCcccccccccCCCcccccc
Q psy10030        265 VGDP-T---FLGYC---VEQGAHCGVKVVEKITPGESLGVLCNVD-----GKHKIVEYSELGNCSVFETQDQTGRLKFNL  332 (484)
Q Consensus       265 ~~Dp-~---~lg~~---~~~~~~~~~~vv~k~~~~e~~G~l~~~~-----g~~~vvEyse~~~e~~~~~~~~~g~~~f~~  332 (484)
                        |+ .   ++..+   .+++..+++-+.+ +.|...+|.+....     +...|..+-|-|+...++.--.+|.  | +
T Consensus       118 --~~~~f~~~l~~~~~~a~~~~lvtlgi~p-~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~--~-~  191 (468)
T TIGR01479       118 --DEDAFQAAVKLAMPAAAEGKLVTFGIVP-THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGD--Y-Y  191 (468)
T ss_pred             --CHHHHHHHHHHHHHHHhcCCEEEEEecC-CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCC--e-E
Confidence              32 2   23322   2345555555544 44767889997541     2234444444444312221111121  1 5


Q ss_pred             cceeeeeecHHHHHHHhh
Q psy10030        333 GSICNHYFSLECLQRMVK  350 (484)
Q Consensus       333 ~Ni~~~~~~l~~l~~~~~  350 (484)
                      .|..++.|+.+.|.+.++
T Consensus       192 wNsGif~~~~~~ll~~l~  209 (468)
T TIGR01479       192 WNSGMFLFRASRYLAELK  209 (468)
T ss_pred             EEeeEEEEEHHHHHHHHH
Confidence            799999999887766553

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=98.63  E-value=1e-06  Score=84.86  Aligned_cols=133  Identities=17%  Similarity=0.237  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYFER  186 (484)
Q Consensus       111 avviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l~~  186 (484)
                      -+|+||||.||||+   .+.||+++|+   .|+|++++.++.+.+        .|   +.- +|.+.....+.+++++++
T Consensus         2 ~aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~--------~g---~~~iivv~~~~~~~~i~~~l~~   67 (214)
T cd04198           2 QAVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEK--------AG---FEDVIVVVPEEEQAEISTYLRS   67 (214)
T ss_pred             EEEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHH--------CC---CCeEEEEECHHHHHHHHHHHHh
Confidence            36889999999997   3789999999   899999999888864        23   434 444443344668888876


Q ss_pred             cCCCCCCC-CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        187 NGYFGLDP-AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       187 ~~~fgl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      .. ..... ..+.+.                     ....+.|+|+.++.....     +    .+.++|+++|.+. ..
T Consensus        68 ~~-~~~~~~~~~~~~---------------------~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~-~~  115 (214)
T cd04198          68 FP-LNLKQKLDEVTI---------------------VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLIT-DL  115 (214)
T ss_pred             cc-cccCcceeEEEe---------------------cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCcccc-cc
Confidence            42 01110 111111                     123468999999876642     1    4568999999764 33


Q ss_pred             CCHHHHHHHHHcCCceEEEEEEcc
Q psy10030        266 GDPTFLGYCVEQGAHCGVKVVEKI  289 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~~~~~vv~k~  289 (484)
                      .--.++..|..+++.+++-+.+..
T Consensus       116 ~l~~~l~~h~~~~~~~t~~~~~~~  139 (214)
T cd04198         116 PLIELVDLHRSHDASLTVLLYPPP  139 (214)
T ss_pred             CHHHHHHHHhccCCcEEEEEeccC
Confidence            333467778888888888666544

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.63  E-value=9.8e-07  Score=94.33  Aligned_cols=180  Identities=18%  Similarity=0.248  Sum_probs=107.8

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.||||+...||.++|+   .|+|++++.++++..        .|   +.-+++...+..+.+.+++.+. 
T Consensus         2 ~~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~--------~g---i~~iivvv~~~~~~i~~~~~~~-   66 (458)
T PRK14354          2 NRYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK--------AG---IDKIVTVVGHGAEEVKEVLGDR-   66 (458)
T ss_pred             CceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh--------CC---CCeEEEEeCCCHHHHHHHhcCC-
Confidence            35689999999999998899999999   899999999998853        23   4445555456666676665431 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-  267 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-  267 (484)
                              +.+..                     +..+.|+++.+.....     .+ +..-+++++++.|+++....| 
T Consensus        67 --------~~~~~---------------------~~~~~g~~~al~~a~~-----~l-~~~~d~vlv~~~D~p~i~~~~l  111 (458)
T PRK14354         67 --------SEFAL---------------------QEEQLGTGHAVMQAEE-----FL-ADKEGTTLVICGDTPLITAETL  111 (458)
T ss_pred             --------cEEEE---------------------cCCCCCHHHHHHHHHH-----Hh-cccCCeEEEEECCccccCHHHH
Confidence                    11111                     1125677766554332     22 222378999999997543222 


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      ..++-++.+.+++.++.+.+..+| ..+|.+... +|+. .++|.....++   +       ......|++.++|+-++|
T Consensus       112 ~~li~~~~~~~~~~t~~~~~~~~~-~~~g~v~~d~~~~V~~~~ek~~~~~~---~-------~~~~~~~~Giy~f~~~~l  180 (458)
T PRK14354        112 KNLIDFHEEHKAAATILTAIAENP-TGYGRIIRNENGEVEKIVEQKDATEE---E-------KQIKEINTGTYCFDNKAL  180 (458)
T ss_pred             HHHHHHHHhcCCceEEEEEEcCCC-CCceEEEEcCCCCEEEEEECCCCChH---H-------hcCcEEEEEEEEEEHHHH
Confidence            224445555567776555554444 356776543 3432 23443222111   0       112356888999998766


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      .+..
T Consensus       181 ~~~l  184 (458)
T PRK14354        181 FEAL  184 (458)
T ss_pred             HHHH
Confidence            5544

>PLN02917 CMP-KDO synthetase

Probab=98.59  E-value=3.7e-06  Score=85.33  Aligned_cols=174  Identities=16%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|++|+|.++||+   +|.+.++   .|+|++++.+++++...          .+..++..  ...+.+.+++.+  
T Consensus        47 ~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~~----------~~~~VVV~--~~~e~I~~~~~~--  106 (293)
T PLN02917         47 RVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLAT----------TLDHIVVA--TDDERIAECCRG--  106 (293)
T ss_pred             cEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcCC----------CCCEEEEE--CChHHHHHHHHH--
Confidence            6889999999999996   6999999   89999999999886421          23444444  446788888865  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       +|.+     +..|..                   ..+.|++.+..++.      .+ ....+++++.++|.+|.   +|
T Consensus       107 -~~v~-----vi~~~~-------------------~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~PlI---~~  151 (293)
T PLN02917        107 -FGAD-----VIMTSE-------------------SCRNGTERCNEALK------KL-EKKYDIVVNIQGDEPLI---EP  151 (293)
T ss_pred             -cCCE-----EEeCCc-------------------ccCCchHHHHHHHH------hc-cCCCCEEEEecCCcCCC---CH
Confidence             2321     111111                   22568888765432      22 23468999999999984   56


Q ss_pred             HHHHHHHH---cCCceE--EEEE--EccCCCcccceEE--EE-CCe-E----E-EEEeccCCcccccccccCCCcccccc
Q psy10030        269 TFLGYCVE---QGAHCG--VKVV--EKITPGESLGVLC--NV-DGK-H----K-IVEYSELGNCSVFETQDQTGRLKFNL  332 (484)
Q Consensus       269 ~~lg~~~~---~~~~~~--~~vv--~k~~~~e~~G~l~--~~-~g~-~----~-vvEyse~~~e~~~~~~~~~g~~~f~~  332 (484)
                      ..|..+++   .+.++.  ..+.  .-.+| ...|.+.  .. +|+ .    . ++|+.+..++          ......
T Consensus       152 ~tI~~li~~~~~~~~~iv~t~~~~~~~~~~-~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~  220 (293)
T PLN02917        152 EIIDGVVKALQAAPDAVFSTAVTSLKPEDA-SDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYL  220 (293)
T ss_pred             HHHHHHHHHHHhcCCceEEEEeeecCHHHh-cCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceE
Confidence            65544332   333332  2222  22233 3456663  33 454 2    2 2243332221          123356


Q ss_pred             cceeeeeecHHHHHHH
Q psy10030        333 GSICNHYFSLECLQRM  348 (484)
Q Consensus       333 ~Ni~~~~~~l~~l~~~  348 (484)
                      -|++++.|+.++|..+
T Consensus       221 ~n~Giy~f~~~~L~~l  236 (293)
T PLN02917        221 LHLGIQSYDAKFLKIY  236 (293)
T ss_pred             EEEEEEEeCHHHHHHH
Confidence            7999999999999844

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=98.47  E-value=5.8e-06  Score=80.01  Aligned_cols=168  Identities=17%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCC--CCchHHHHHHHH
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSE--LTDRPTREYFER  186 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~--~t~e~t~~~l~~  186 (484)
                      +|+||||.||||+.   +.||+|+|+   .|+|++++.++.+..        .| .... ++.+..  ...+...+.+..
T Consensus         1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~~--------~g-~~~i-vvv~~~~~~~~~~~~~~~~~   67 (231)
T cd04183           1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLAK--------IF-DSRF-IFICRDEHNTKFHLDESLKL   67 (231)
T ss_pred             CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhhc--------cC-CceE-EEEEChHHhhhhhHHHHHHH
Confidence            58999999999964   789999999   899999998887753        34 2222 233321  111223333332


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      .. .+   .++ ++.|                     ..+.|+++.+.+....     +  .+.++++|.+.|++.. ..
T Consensus        68 ~~-~~---~~i-~~~~---------------------~~~~g~~~~l~~a~~~-----l--~~~~~~lv~~~D~i~~-~~  113 (231)
T cd04183          68 LA-PN---ATV-VELD---------------------GETLGAACTVLLAADL-----I--DNDDPLLIFNCDQIVE-SD  113 (231)
T ss_pred             hC-CC---CEE-EEeC---------------------CCCCcHHHHHHHHHhh-----c--CCCCCEEEEecceeec-cC
Confidence            11 11   112 1111                     1267887766654321     1  1347889999999752 22


Q ss_pred             CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      -..++-.+...+.+.++-++.+  +..+.|.+... +|+.  .+..+-+..             -...|++.++|+-+
T Consensus       114 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~v~~d~~~~v--~~~~ek~~~-------------~~~~~~Giy~~~~~  174 (231)
T cd04183         114 LLAFLAAFRERDLDGGVLTFFS--SHPRWSYVKLDENGRV--IETAEKEPI-------------SDLATAGLYYFKSG  174 (231)
T ss_pred             HHHHHHHhhccCCceEEEEEeC--CCCCeEEEEECCCCCE--EEeEEcCCC-------------CCccEeEEEEECcH
Confidence            2234444455566666555554  33456766543 4432  222211111             02467888999976

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=3.4e-06  Score=87.35  Aligned_cols=200  Identities=21%  Similarity=0.293  Sum_probs=129.6

Q ss_pred             CCEEEEEEcCCCCccccc---cCCCccccccCCCCCc-HHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKS-LFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY  183 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s-~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~  183 (484)
                      .++-+++||||.|+||+.   ..+|+..|+   .||- +.++.+-...        ..|   |--+-+..-+......++
T Consensus         4 ~~~laiILaGg~G~rL~~LT~~RakpAVpF---gGkYRiIDF~LSN~v--------NSG---i~~I~VltQy~~~SL~~H   69 (393)
T COG0448           4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPF---GGKYRIIDFALSNCV--------NSG---IRRIGVLTQYKSHSLNDH   69 (393)
T ss_pred             cceEEEEEcCCCCCccchhhhCcccccccc---CceeEEEeEEccccc--------ccC---CCeEEEEeccchhHHHHH
Confidence            367789999999999875   789988887   4443 3443322221        123   444444444444488899


Q ss_pred             HHHcCCCCCCC--CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030        184 FERNGYFGLDP--AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNI  261 (484)
Q Consensus       184 l~~~~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~  261 (484)
                      +.....|++++  +.|+++....-             ...-.|+ -|+.+++..   +  +.-+.+-+.+|+.|+++|-+
T Consensus        70 i~~G~~w~l~~~~~~v~ilp~~~~-------------~~~~~wy-~Gtadai~Q---n--l~~i~~~~~eyvlIlsgDhI  130 (393)
T COG0448          70 IGRGWPWDLDRKNGGVFILPAQQR-------------EGGERWY-EGTADAIYQ---N--LLIIRRSDPEYVLILSGDHI  130 (393)
T ss_pred             hhCCCccccccccCcEEEeCchhc-------------cCCCcce-eccHHHHHH---h--HHHHHhcCCCEEEEecCCEE
Confidence            99887787763  33433332110             1122355 467765553   1  23445678999999999998


Q ss_pred             ccccCCHHHHHHHHHcCCceEEEEEEccCC-CcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeee
Q psy10030        262 LVKVGDPTFLGYCVEQGAHCGVKVVEKITP-GESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF  340 (484)
Q Consensus       262 l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~-~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~  340 (484)
                       .+..--.+|-+|.+.++++++.|.+.... ..+.| +...|..-+++|+.|-|.++.         .....+.+.+++|
T Consensus       131 -YkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fG-im~~D~~~~i~~F~eKp~~~~---------~~~~laSMgiYIf  199 (393)
T COG0448         131 -YKMDYSDMLDFHIESGADVTVAVKEVPREEASRFG-VMNVDENGRIIEFVEKPADGP---------PSNSLASMGIYIF  199 (393)
T ss_pred             -EecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcC-ceEECCCCCEEeeeeccCcCC---------cccceeeeeeEEE
Confidence             46555559999999999999887755421 13568 455666667888888776511         1112567889999


Q ss_pred             cHHHHHHHhhc
Q psy10030        341 SLECLQRMVKE  351 (484)
Q Consensus       341 ~l~~l~~~~~~  351 (484)
                      +.++|.++++.
T Consensus       200 ~~~~L~~~L~~  210 (393)
T COG0448         200 NTDLLKELLEE  210 (393)
T ss_pred             cHHHHHHHHHH
Confidence            99999988864

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=98.42  E-value=7.6e-08  Score=97.90  Aligned_cols=82  Identities=21%  Similarity=0.293  Sum_probs=55.3

Q ss_pred             eeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccccc---------cCCCCcccCCCCCChhhHHHHHHh
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQ---------VFPPNCLSGVNTVDASTLGKYREL  100 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~~---------p~~~~~~~~~~~~~~~~~~~~~~~  100 (484)
                      +||++||||||||||.++|||+++|+++  .++++.++.+.+...++         .+|+..|.|..+ ..+...-+++.
T Consensus         1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~n   77 (315)
T cd06424           1 AVFVLVAGGLGERLGYSGIKIGLPVELT--TNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEEN   77 (315)
T ss_pred             CEEEEecCCCccccCCCCCceeeeccCC--CCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHHC
Confidence            4899999999999999999999999875  45666666554444433         478888988754 23333444433


Q ss_pred             ---ch-----hcccCCCEEEEE
Q psy10030        101 ---GL-----KLISRGDVAVIV  114 (484)
Q Consensus       101 ---G~-----~~i~~gkvavvi  114 (484)
                         |+     ..+.|+++.++.
T Consensus        78 ~yFGl~~~~V~fF~Q~~~P~l~   99 (315)
T cd06424          78 NYFGLEKDQVHILKQEKVFCLI   99 (315)
T ss_pred             CccCCCcccEEEEecCceEEEe
Confidence               22     234566666654

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=98.39  E-value=2.2e-05  Score=76.44  Aligned_cols=178  Identities=17%  Similarity=0.167  Sum_probs=102.7

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++++|+||+|.++||+   +|.+.++   .|+|++++.++++.+.       .   .+.-+++++.  ++.+.+++++  
T Consensus         2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~-------~---~~~~ivv~t~--~~~i~~~~~~--   61 (238)
T PRK13368          2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA-------A---GVEEVYVATD--DQRIEDAVEA--   61 (238)
T ss_pred             cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc-------C---CCCeEEEECC--hHHHHHHHHH--
Confidence            4789999999999995   5999999   8999999999988641       1   2555666654  4788888875  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       +|.+   + ++ +.                   ...+.|++++..++.         ..+.+++++.++|+++....+-
T Consensus        62 -~~~~---v-~~-~~-------------------~~~~~g~~~~~~a~~---------~~~~d~~lv~~~D~P~i~~~~i  107 (238)
T PRK13368         62 -FGGK---V-VM-TS-------------------DDHLSGTDRLAEVML---------KIEADIYINVQGDEPMIRPRDI  107 (238)
T ss_pred             -cCCe---E-Ee-cC-------------------ccCCCccHHHHHHHH---------hCCCCEEEEEcCCcCcCCHHHH
Confidence             3432   2 11 11                   122467776554432         1256889999999987432221


Q ss_pred             H-HHHHHHHcCC-ceEEEEEEccC------CCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeee
Q psy10030        269 T-FLGYCVEQGA-HCGVKVVEKIT------PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF  340 (484)
Q Consensus       269 ~-~lg~~~~~~~-~~~~~vv~k~~------~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~  340 (484)
                      . ++..+...+. ++.+-+.++..      |. ..|++...+|+.  ..+.+-+.. ..  ++.  .......|++.+.|
T Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~g~v--~~~~~~~~~-~~--~~~--~~~~~~~n~giy~~  179 (238)
T PRK13368        108 DTLIQPMLDDPSINVATLCAPISTEEEFESPN-VVKVVVDKNGDA--LYFSRSPIP-SR--RDG--ESARYLKHVGIYAF  179 (238)
T ss_pred             HHHHHHHHHCCCccceeEEEEcCCHHHhcCcC-CCEEEECCCCCE--EEeeCCCCC-CC--CCC--CCCceeEEEEEEEe
Confidence            1 2333333333 44444444332      32 234433345653  223321111 00  000  01112678999999


Q ss_pred             cHHHHHHH
Q psy10030        341 SLECLQRM  348 (484)
Q Consensus       341 ~l~~l~~~  348 (484)
                      +.++++..
T Consensus       180 ~~~~l~~~  187 (238)
T PRK13368        180 RRDVLQQF  187 (238)
T ss_pred             CHHHHHHH
Confidence            99988875

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=98.37  E-value=4.5e-06  Score=76.05  Aligned_cols=107  Identities=24%  Similarity=0.424  Sum_probs=67.7

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG  191 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg  191 (484)
                      +||||||.|+|||.  ||.++++   .|+|+++++++.+...        +   +.-++++..+  +.+.+++..   ++
T Consensus         1 ~vILa~G~s~Rmg~--~K~l~~i---~g~~li~~~l~~l~~~--------~---~~~Ivvv~~~--~~~~~~~~~---~~   59 (160)
T PF12804_consen    1 AVILAAGKSSRMGG--PKALLPI---GGKPLIERVLEALREA--------G---VDDIVVVTGE--EEIYEYLER---YG   59 (160)
T ss_dssp             EEEEESSSCGGGTS--CGGGSEE---TTEEHHHHHHHHHHHH--------T---ESEEEEEEST--HHHHHHHTT---TT
T ss_pred             CEEECCcCcccCCC--CccceeE---CCccHHHHHHHHhhcc--------C---CceEEEecCh--HHHHHHHhc---cC
Confidence            58999999999984  9999999   9999999999998753        2   4444444444  455555533   22


Q ss_pred             CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc-CCeEEEEEeCCCCccccCCHHH
Q psy10030        192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR-GIKHIHVYCVDNILVKVGDPTF  270 (484)
Q Consensus       192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~-G~~~i~v~~vDN~l~~~~Dp~~  270 (484)
                           +.++.                       .|.-+.|...+|..     .+... +.++++|..+|.++   .++..
T Consensus        60 -----~~~v~-----------------------~~~~~~G~~~sl~~-----a~~~~~~~~~vlv~~~D~p~---~~~~~  103 (160)
T PF12804_consen   60 -----IKVVV-----------------------DPEPGQGPLASLLA-----ALSQLPSSEPVLVLPCDQPF---LSPEL  103 (160)
T ss_dssp             -----SEEEE------------------------STSSCSHHHHHHH-----HHHTSTTSSEEEEEETTETT---S-HHH
T ss_pred             -----ceEEE-----------------------eccccCChHHHHHH-----HHHhcccCCCcEEEeCCccc---cCHHH
Confidence                 11111                       12112444444332     23333 78999999999986   45665


Q ss_pred             HHHHH
Q psy10030        271 LGYCV  275 (484)
Q Consensus       271 lg~~~  275 (484)
                      +-...
T Consensus       104 l~~l~  108 (160)
T PF12804_consen  104 LRRLL  108 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

...

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=98.33  E-value=1e-05  Score=78.04  Aligned_cols=162  Identities=16%  Similarity=0.179  Sum_probs=95.6

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +|+||||.|+||+.   +.||+++|+   .|+|++++.++.+..        .|   +.-+++...+..+.+.+++.+..
T Consensus         3 avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~~~~~~~~~~   68 (216)
T cd02507           3 AVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK--------AG---VEEVFVVCCEHSQAIIEHLLKSK   68 (216)
T ss_pred             EEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH--------CC---CCeEEEEeCCcHHHHHHHHHhcc
Confidence            68899999999974   789999999   899999998887753        33   55444444566677777887643


Q ss_pred             CCCCCC-CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        189 YFGLDP-AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       189 ~fgl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                      +..... ..+.+               .    ......+.|+++........     +    .+.++|.++|++. ...-
T Consensus        69 ~~~~~~~~~v~~---------------~----~~~~~~~~Gta~~l~~~~~~-----i----~~dflv~~gD~i~-~~~l  119 (216)
T cd02507          69 WSSLSSKMIVDV---------------I----TSDLCESAGDALRLRDIRGL-----I----RSDFLLLSCDLVS-NIPL  119 (216)
T ss_pred             cccccCCceEEE---------------E----EccCCCCCccHHHHHHHhhc-----C----CCCEEEEeCCEee-cCCH
Confidence            210000 01110               0    00112367888776644321     1    3568999999874 2322


Q ss_pred             HHHHHH--HHHcCCceEEEEEEccCC--------CcccceEEEEC--CeEEEEEeccCCcc
Q psy10030        268 PTFLGY--CVEQGAHCGVKVVEKITP--------GESLGVLCNVD--GKHKIVEYSELGNC  316 (484)
Q Consensus       268 p~~lg~--~~~~~~~~~~~vv~k~~~--------~e~~G~l~~~~--g~~~vvEyse~~~e  316 (484)
                      ..++-.  ....+.++++.+.....+        .+..++++...  ++..++.|.+-+++
T Consensus       120 ~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~  180 (216)
T cd02507         120 SELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE  180 (216)
T ss_pred             HHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence            234432  333455555444443211        22346666543  44778888776554

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=1.4e-07  Score=99.13  Aligned_cols=63  Identities=38%  Similarity=0.581  Sum_probs=49.1

Q ss_pred             HHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----ccCCCCcccCCC
Q psy10030         21 GLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----QVFPPNCLSGVN   87 (484)
Q Consensus        21 g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----~p~~~~~~~~~~   87 (484)
                      |+..|..|++||+.||||||||||..+|||+++|. +   ++++.++.+.+...+     .++|+..|.|..
T Consensus        97 ~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~-~---gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~n  164 (472)
T COG4284          97 GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK-D---GKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLN  164 (472)
T ss_pred             hhhhhhcCceEEEEecCCcccccccCCCceeEEec-C---CCcHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            79999999999999999999999999999999997 1   444445544222211     578899999843

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=98.32  E-value=5.6e-06  Score=78.25  Aligned_cols=62  Identities=26%  Similarity=0.464  Sum_probs=48.0

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+|+||||+|||||. .||.++++   .|+|++++.++.+...        +   +.-+++...+.++.++.++++
T Consensus         1 m~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~~~~~~~~~l~~   62 (183)
T TIGR00454         1 MDALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKS--------K---VNNIIIATSPHTPKTEEYINS   62 (183)
T ss_pred             CeEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhC--------C---CCEEEEEeCCCHHHHHHHHhh
Confidence            3578999999999975 79999999   8999999999988641        1   444444444567778888865

At this time this gene appears to be present only in Archea

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.26  E-value=8.2e-06  Score=79.11  Aligned_cols=118  Identities=22%  Similarity=0.387  Sum_probs=82.3

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      +.+||||+|.|||||.+.||++..|   .|++++++++++|..        -|  .--.++.|+++..+.+.+|+.++++
T Consensus         4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~--------~g--i~e~vvV~~g~~~~lve~~l~~~~~   70 (239)
T COG1213           4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAK--------AG--ITEFVVVTNGYRADLVEEFLKKYPF   70 (239)
T ss_pred             eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHH--------cC--CceEEEEeccchHHHHHHHHhcCCc
Confidence            5689999999999999999999999   799999988888754        12  2356888999999999999998763


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT  269 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~  269 (484)
                            +..++.-+.               ++.     || -.|+.+...   +.|..+    +.+.+.|-+    -.|.
T Consensus        71 ------~~~iv~N~~---------------y~k-----tN-~~~Sl~~ak---d~~~~~----fii~~sD~v----ye~~  112 (239)
T COG1213          71 ------NAKIVINSD---------------YEK-----TN-TGYSLLLAK---DYMDGR----FILVMSDHV----YEPS  112 (239)
T ss_pred             ------ceEEEeCCC---------------ccc-----CC-ceeEEeeeh---hhhcCc----EEEEeCCEe----ecHH
Confidence                  233333322               111     11 123322221   333222    788899976    4799


Q ss_pred             HHHHHHHcC
Q psy10030        270 FLGYCVEQG  278 (484)
Q Consensus       270 ~lg~~~~~~  278 (484)
                      ++-...+..
T Consensus       113 ~~e~l~~a~  121 (239)
T COG1213         113 ILERLLEAP  121 (239)
T ss_pred             HHHHHHhCc
Confidence            998887754

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=98.25  E-value=5.1e-07  Score=95.63  Aligned_cols=77  Identities=27%  Similarity=0.428  Sum_probs=51.2

Q ss_pred             hhHHHH--HHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHH-HhhhhhhccccccccccccCCCCcccCCC
Q psy10030         11 ASTLGK--YRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQV-YIGHGYQELSGVQLSEVQVFPPNCLSGVN   87 (484)
Q Consensus        11 ~~~~~~--~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~-f~~~~~~~L~ai~~~~~~p~~~~~~~~~~   87 (484)
                      -+.++.  | +.|+..++.|||||++||||||||||.++|||+++|-=.. |+.-..+++..++...=.++|+..|.|..
T Consensus        37 ~~~l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~  115 (420)
T PF01704_consen   37 YESLKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFN  115 (420)
T ss_dssp             HHHHHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred             hhHhccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcc
Confidence            344555  6 7899999999999999999999999999999999882100 21211222222211111457788888875


Q ss_pred             C
Q psy10030         88 T   88 (484)
Q Consensus        88 ~   88 (484)
                      +
T Consensus       116 T  116 (420)
T PF01704_consen  116 T  116 (420)
T ss_dssp             T
T ss_pred             c
Confidence            4

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=98.23  E-value=3.7e-07  Score=92.52  Aligned_cols=69  Identities=23%  Similarity=0.404  Sum_probs=49.0

Q ss_pred             CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----ccCCCCcccCCCCCChhhHHHHHHhc
Q psy10030         28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----QVFPPNCLSGVNTVDASTLGKYRELG  101 (484)
Q Consensus        28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~G  101 (484)
                      ++|||++||||||||||.++|||++++.    .++++.++...+...+     .++|+..|.|..+ ..+...-+++.+
T Consensus         2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~----~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~   75 (300)
T cd00897           2 NKLVVLKLNGGLGTSMGCTGPKSLIEVR----DGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYA   75 (300)
T ss_pred             CcEEEEEecCCcccccCCCCCceeeecC----CCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcC
Confidence            6899999999999999999999999982    3555555544333222     4578888988765 334445555554

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=98.22  E-value=5.7e-05  Score=72.41  Aligned_cols=183  Identities=15%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      |+++|+||||.|+||+   .|.+.++   .|+|++++.++.+++..          .+..+++++  .++.+.+++.+  
T Consensus         1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~~----------~~~~IvV~~--~~~~i~~~~~~--   60 (223)
T cd02513           1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALESK----------LFDRVVVST--DDEEIAEVARK--   60 (223)
T ss_pred             CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhCC----------CCCEEEEEC--CcHHHHHHHHH--
Confidence            5789999999999995   5999998   89999999999887421          144455554  35667777665  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc--CCeEEEEEeCCCCccccC
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR--GIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~--G~~~i~v~~vDN~l~~~~  266 (484)
                       +|..   + .+..                +.....-..|.++.+...     ++.+...  +.++++++++|+++.   
T Consensus        61 -~~~~---~-~~~~----------------~~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~P~i---  111 (223)
T cd02513          61 -YGAE---V-PFLR----------------PAELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTSPLR---  111 (223)
T ss_pred             -hCCC---c-eeeC----------------ChHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCCCcC---
Confidence             3321   1 1110                001111112333333322     2333332  368999999999974   


Q ss_pred             CHHHH----HHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        267 DPTFL----GYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       267 Dp~~l----g~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      ++..+    ..+...+.+..+-+++... .-..+.....+| ...+-|.+-......+.      .....-|.+.++++.
T Consensus       112 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~q~~------~~~~~~n~~~y~~~~  183 (223)
T cd02513         112 SAEDIDEAIELLLSEGADSVFSVTEFHR-FPWRALGLDDNG-LEPVNYPEDKRTRRQDL------PPAYHENGAIYIAKR  183 (223)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEEEecCc-CcHHheeeccCC-ceeccCcccccCCcCCC------hhHeeECCEEEEEEH
Confidence            45444    3334456787777776542 223333332333 33333322111101111      122356778889999


Q ss_pred             HHHHHH
Q psy10030        343 ECLQRM  348 (484)
Q Consensus       343 ~~l~~~  348 (484)
                      +++.+.
T Consensus       184 ~~~~~~  189 (223)
T cd02513         184 EALLES  189 (223)
T ss_pred             HHHHhc
Confidence            877653

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=98.18  E-value=1.2e-05  Score=74.41  Aligned_cols=38  Identities=29%  Similarity=0.514  Sum_probs=34.1

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      +++|+||||.|+|||.  ||.+.++   .|+|++++.++++..
T Consensus         1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~   38 (186)
T cd04182           1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA   38 (186)
T ss_pred             CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence            4689999999999985  9999999   899999999998864

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=98.09  E-value=2e-05  Score=76.67  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=74.3

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHHcC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      +++|+||||.|+|||.+.||.++++   .|+|++++.++.++..          ..+ ..++.++......+.+++.++ 
T Consensus         3 ~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~----------~~~~~ivVv~~~~~~~~~~~~~~~~-   68 (230)
T PRK13385          3 YELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD----------NRCSKIIIVTQAQERKHVQDLMKQL-   68 (230)
T ss_pred             eEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC----------CCCCEEEEEeChhhHHHHHHHHHhc-
Confidence            7899999999999998899999999   8999999999887531          113 445555554445555566553 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                        |.....+                         ...+.|++.. .++.. | ++.+.  ..+.++++.+|.++   .+|
T Consensus        69 --~~~~~~~-------------------------~~v~~g~~r~-~sv~~-g-l~~~~--~~d~vli~~~d~P~---i~~  113 (230)
T PRK13385         69 --NVADQRV-------------------------EVVKGGTERQ-ESVAA-G-LDRIG--NEDVILVHDGARPF---LTQ  113 (230)
T ss_pred             --CcCCCce-------------------------EEcCCCchHH-HHHHH-H-HHhcc--CCCeEEEccCCCCC---CCH
Confidence              3211111                         2334566542 22221 1 12221  23678888999997   467


Q ss_pred             HHHHHHHH
Q psy10030        269 TFLGYCVE  276 (484)
Q Consensus       269 ~~lg~~~~  276 (484)
                      ..+.-+++
T Consensus       114 ~~i~~li~  121 (230)
T PRK13385        114 DIIDRLLE  121 (230)
T ss_pred             HHHHHHHH
Confidence            77765543

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=98.07  E-value=3.3e-05  Score=73.70  Aligned_cols=106  Identities=20%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      .+..|+||||+++||   .+|+++++   .|++++++.+++++.        +  .. .++| ++..+.+.       +.
T Consensus         4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~~--------~--~~-~vvi-~~~~~~~~-------~~   58 (192)
T COG0746           4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLRP--------Q--VD-VVVI-SANRNQGR-------YA   58 (192)
T ss_pred             CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhcc--------c--CC-EEEE-eCCCchhh-------hh
Confidence            678999999999999   89999999   999999999999863        1  22 3444 44443331       22


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCC---chHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGH---GGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~---Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      .||++   |.                        .-...|.   +|++.+|         ...+-+|++|..+|+++   
T Consensus        59 ~~g~~---vv------------------------~D~~~~~GPL~Gi~~al---------~~~~~~~~~v~~~D~P~---   99 (192)
T COG0746          59 EFGLP---VV------------------------PDELPGFGPLAGILAAL---------RHFGTEWVLVLPCDMPF---   99 (192)
T ss_pred             ccCCc---ee------------------------ecCCCCCCCHHHHHHHH---------HhCCCCeEEEEecCCCC---
Confidence            35533   10                        1111222   4555554         44568999999999997   


Q ss_pred             CCHHHHHHHHHcC
Q psy10030        266 GDPTFLGYCVEQG  278 (484)
Q Consensus       266 ~Dp~~lg~~~~~~  278 (484)
                      ..+.++-+..+..
T Consensus       100 i~~~lv~~l~~~~  112 (192)
T COG0746         100 IPPELVERLLSAF  112 (192)
T ss_pred             CCHHHHHHHHHhh
Confidence            4677887776643

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=98.03  E-value=0.00035  Score=68.66  Aligned_cols=180  Identities=16%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG  191 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg  191 (484)
                      +||+|+|.||||+   +|.+.++   .|+|++++.++++++           ..+.-+++.++  ++.+.+.+++   ||
T Consensus         2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~-----------~~~d~VvVvt~--~~~i~~~~~~---~g   59 (238)
T TIGR00466         2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANE-----------SGADRCIVATD--DESVAQTCQK---FG   59 (238)
T ss_pred             EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHh-----------CCCCeEEEEeC--HHHHHHHHHH---cC
Confidence            6899999999994   8999999   899999999998753           11444444433  3557776665   44


Q ss_pred             CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHH
Q psy10030        192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFL  271 (484)
Q Consensus       192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~l  271 (484)
                      ..   +.                 +..    ...+.|+..+...+.      .+.....++++++++|.++   .+|..|
T Consensus        60 ~~---~v-----------------~~~----~~~~~Gt~r~~~~~~------~l~~~~~d~Vli~~gD~Pl---i~~~~I  106 (238)
T TIGR00466        60 IE---VC-----------------MTS----KHHNSGTERLAEVVE------KLALKDDERIVNLQGDEPF---IPKEII  106 (238)
T ss_pred             CE---EE-----------------EeC----CCCCChhHHHHHHHH------HhCCCCCCEEEEEcCCcCc---CCHHHH
Confidence            32   11                 000    112345444554432      1111235789999999997   467766


Q ss_pred             HHHHH----cCCceEEEEEEccCCCcc----cceEE-EECCeEEEEEecc--CC--cccccccccCCCcccccccceeee
Q psy10030        272 GYCVE----QGAHCGVKVVEKITPGES----LGVLC-NVDGKHKIVEYSE--LG--NCSVFETQDQTGRLKFNLGSICNH  338 (484)
Q Consensus       272 g~~~~----~~~~~~~~vv~k~~~~e~----~G~l~-~~~g~~~vvEyse--~~--~e~~~~~~~~~g~~~f~~~Ni~~~  338 (484)
                      .-+++    .+++++.-+++..++.+.    ...++ ..+|+..  -++.  +|  .........+.+  ...+.|++.+
T Consensus       107 ~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~al--yfsr~~ip~~R~~~~~~~tpq~--~~~~~h~Giy  182 (238)
T TIGR00466       107 RQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYAL--YFSRSLIPFDRDFFAKRQTPVG--DNLLRHIGIY  182 (238)
T ss_pred             HHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEE--EecCCCCCCCCCcccccccccc--cceeEEEEEE
Confidence            55443    346788888887653331    22222 3355421  1122  11  110111011111  1135699999


Q ss_pred             eecHHHHHHHhh
Q psy10030        339 YFSLECLQRMVK  350 (484)
Q Consensus       339 ~~~l~~l~~~~~  350 (484)
                      -|+.++|++...
T Consensus       183 ~~~~~~L~~~~~  194 (238)
T TIGR00466       183 GYRAGFIEEYVA  194 (238)
T ss_pred             eCCHHHHHHHHh
Confidence            999999999874

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=98.01  E-value=3.7e-05  Score=73.82  Aligned_cols=39  Identities=26%  Similarity=0.558  Sum_probs=35.2

Q ss_pred             EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++|+||||.|||||.+.||.++++   .|+|++++.++++..
T Consensus         1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~~   39 (217)
T TIGR00453         1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFLA   39 (217)
T ss_pred             CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHhc
Confidence            368999999999998889999999   899999999998863

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=97.99  E-value=8.3e-05  Score=71.18  Aligned_cols=40  Identities=40%  Similarity=0.691  Sum_probs=36.0

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      +++|+||||.|+|||...||.++++   .|+|++++.++++..
T Consensus         1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~~   40 (218)
T cd02516           1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFLA   40 (218)
T ss_pred             CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHhc
Confidence            4689999999999997789999999   899999999998864

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=97.89  E-value=6.7e-05  Score=69.95  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      +||||||.|+|||  .||.++++   .|+|++++.++++++
T Consensus         2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~   37 (188)
T TIGR03310         2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALR   37 (188)
T ss_pred             eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHH
Confidence            6899999999998  59999999   899999999988864

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=97.89  E-value=0.00016  Score=67.22  Aligned_cols=37  Identities=30%  Similarity=0.643  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++|+||||.|+|||.  ||.++++   .|+|++++.++++..
T Consensus         2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~   38 (181)
T cd02503           2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP   38 (181)
T ss_pred             cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence            579999999999985  9999999   899999999888764

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=97.86  E-value=0.0003  Score=73.89  Aligned_cols=147  Identities=14%  Similarity=0.157  Sum_probs=86.0

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++++|+||||.|||||...||.++++   .|+|++++.++.+...        +  .+.-++++....++...+.+.+. 
T Consensus         5 ~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~~~--------~--~i~~IvVVv~~~~~~~~~~~~~~-   70 (378)
T PRK09382          5 DISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLSSA--------P--AFKEIVVVIHPDDIAYMKKALPE-   70 (378)
T ss_pred             cceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHhcC--------C--CCCeEEEEeChHHHHHHHHhccc-
Confidence            58899999999999998899999999   8999999988888631        1  23444555444333322221110 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCc---hHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHG---GLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~G---gi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                       +.    .+.                         ....|.+   .++.+|.         ....++++|+.+|-++   
T Consensus        71 -~~----~v~-------------------------~v~gG~~r~~SV~~gL~---------~l~~d~VLVhdadrPf---  108 (378)
T PRK09382         71 -IK----FVT-------------------------LVTGGATRQESVRNALE---------ALDSEYVLIHDAARPF---  108 (378)
T ss_pred             -CC----eEE-------------------------EeCCCchHHHHHHHHHH---------hcCCCeEEEeeccccC---
Confidence             10    010                         1112221   1333332         2223899999999886   


Q ss_pred             CCHHHHHHHHH--cCCceEEEEEEccCCCcccceEEEECCeEEEEEecc
Q psy10030        266 GDPTFLGYCVE--QGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSE  312 (484)
Q Consensus       266 ~Dp~~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse  312 (484)
                      +++..+..+++  .+.+.++-+++..++- +.|.......+...++--|
T Consensus       109 v~~e~I~~li~~~~~~~a~i~~~pv~Dti-k~~~~tldR~~l~~~QTPQ  156 (378)
T PRK09382        109 VPKELIDRLIEALDKADCVLPALPVADTL-KRANETVDREGLKLIQTPQ  156 (378)
T ss_pred             CCHHHHHHHHHHhhcCCeEEEEEEeccCc-EEeeeEcCcccEEEEECCC
Confidence            46776665544  3456667777776553 4444333333444455433

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=97.83  E-value=0.00018  Score=67.63  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++|+||||.|+|||.  +|.++++   .|+|++++.++.+++
T Consensus         2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~~   38 (190)
T TIGR03202         2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTALS   38 (190)
T ss_pred             eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHHh
Confidence            479999999999985  7999999   899999998877653

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=97.82  E-value=1.5e-05  Score=79.74  Aligned_cols=28  Identities=50%  Similarity=0.812  Sum_probs=26.0

Q ss_pred             eeeeeecCCcccccCCCCCCccccccHH
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIKIQ   57 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~   57 (484)
                      |||++||||||||||.+.||++++|+++
T Consensus         1 va~viLaGG~GtRLg~~~PK~~~~i~~~   28 (266)
T cd04180           1 VAVVLLAGGLGTRLGKDGPKSSTDVGLP   28 (266)
T ss_pred             CEEEEECCCCccccCCCCCceeeeecCC
Confidence            6899999999999999999999999854

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=97.77  E-value=0.0002  Score=66.84  Aligned_cols=38  Identities=29%  Similarity=0.644  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      +++|+||||.|||||. .||.+.++   .|+|++++.++.++
T Consensus         1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~   38 (186)
T TIGR02665         1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR   38 (186)
T ss_pred             CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence            4689999999999983 49999999   89999999998875

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.77  E-value=1.7e-05  Score=84.70  Aligned_cols=85  Identities=19%  Similarity=0.306  Sum_probs=54.7

Q ss_pred             CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccc-----cccCCCCcccCCCCCChhhHHHHHHhc-
Q psy10030         28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSE-----VQVFPPNCLSGVNTVDASTLGKYRELG-  101 (484)
Q Consensus        28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~G-  101 (484)
                      +|+||++||||||||||.+.|||++++-    .++++.++.+.+...     =..+|+..|.|..+ ..+...-+++.+ 
T Consensus        78 ~k~avlkLnGGlGTrmG~~~PKs~i~v~----~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~  152 (469)
T PLN02474         78 DKLVVLKLNGGLGTTMGCTGPKSVIEVR----NGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTN  152 (469)
T ss_pred             hcEEEEEecCCcccccCCCCCceeEEcC----CCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCC
Confidence            8999999999999999999999999861    233333333322222     24578888888764 333444555544 


Q ss_pred             ----hhcccCCCEEEEEEcC
Q psy10030        102 ----LKLISRGDVAVIVLAG  117 (484)
Q Consensus       102 ----~~~i~~gkvavviLaG  117 (484)
                          ...+.|+++..+...|
T Consensus       153 ~~~~i~~F~Q~~~P~l~~~~  172 (469)
T PLN02474        153 SNIEIHTFNQSQYPRVVADD  172 (469)
T ss_pred             CccceEEEecCceeeEecCC
Confidence                2334566666666554

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=97.76  E-value=6.1e-05  Score=71.79  Aligned_cols=41  Identities=27%  Similarity=0.528  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCCccccccCCCccccccCCCC-CcHHHHHHHHHHH
Q psy10030        107 RGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG-KSLFQIQAEKIDK  152 (484)
Q Consensus       107 ~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~-~s~l~l~~~~i~~  152 (484)
                      ..++++|+||||+++|||  .+|.++++   .| +|++++.++++..
T Consensus         6 ~~~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~~   47 (196)
T PRK00560          6 IDNIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLLK   47 (196)
T ss_pred             ccCceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHHH
Confidence            357899999999999997  58999998   78 9999999988853

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.73  E-value=0.00027  Score=73.97  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=35.3

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++++|+||||+||||| ..||.++++   .|+|++++.++.+.
T Consensus         5 ~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~   43 (366)
T PRK14489          5 QIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR   43 (366)
T ss_pred             CceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence            6889999999999996 379999999   89999999998875

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=97.71  E-value=0.00026  Score=68.53  Aligned_cols=41  Identities=34%  Similarity=0.542  Sum_probs=37.5

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++.+|+||||.|||||...||.+.++   .|+|++++.++++..
T Consensus         3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~~   43 (227)
T PRK00155          3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFLA   43 (227)
T ss_pred             ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHHc
Confidence            57899999999999998899999999   899999999998863

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=97.66  E-value=0.001  Score=66.08  Aligned_cols=159  Identities=22%  Similarity=0.275  Sum_probs=101.0

Q ss_pred             EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      -+|+.|.|+|||+=.   ..||-|+||   -+|+..|++++...+        .|   |--+++.++.+...+.+||...
T Consensus         6 KAViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~--------aG---Ie~i~iVTgr~K~~IeDhFD~s   71 (291)
T COG1210           6 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA--------AG---IEEILIVTGRGKRAIEDHFDTS   71 (291)
T ss_pred             EEEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH--------cC---CCEEEEEecCCcchHHHhCcCc
Confidence            378899999999843   789999999   789999999987754        35   6666666666666787777431


Q ss_pred             -------------------CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc
Q psy10030        188 -------------------GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR  248 (484)
Q Consensus       188 -------------------~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~  248 (484)
                                         ... -+..+++|..|..                     |.|-|.+......      |  -
T Consensus        72 ~ELE~~L~~~~K~~~L~~v~~i-~~~~~i~~vRQ~e---------------------~~GLGhAVl~A~~------~--v  121 (291)
T COG1210          72 YELENTLEKRGKRELLEEVRSI-PPLVTISFVRQKE---------------------PLGLGHAVLCAKP------F--V  121 (291)
T ss_pred             HHHHHHHHHhCHHHHHHHHHhc-ccCceEEEEecCC---------------------CCcchhHHHhhhh------h--c
Confidence                               011 1123444444444                     8899988775433      3  5


Q ss_pred             CCeEEEEEeCCCCccccCCHH---HHHHHHH-cCCceEEEEEEccCCCcccceEE----EECCeEEEEEeccCCc
Q psy10030        249 GIKHIHVYCVDNILVKVGDPT---FLGYCVE-QGAHCGVKVVEKITPGESLGVLC----NVDGKHKIVEYSELGN  315 (484)
Q Consensus       249 G~~~i~v~~vDN~l~~~~Dp~---~lg~~~~-~~~~~~~~vv~k~~~~e~~G~l~----~~~g~~~vvEyse~~~  315 (484)
                      |-|.+.|.-.|-++. ..-|.   ++-...+ .+.-++.+-|+.. .-.++|++.    ..+|-+++...-|-|.
T Consensus       122 g~EpFaVlL~Ddl~~-~~~~~l~qmi~~ye~~g~svi~v~ev~~e-~v~kYGvi~~g~~~~~~~~~v~~~VEKP~  194 (291)
T COG1210         122 GDEPFAVLLPDDLVD-SEKPCLKQMIELYEETGGSVIGVEEVPPE-DVSKYGVIDPGEPVEKGVYKVKGMVEKPK  194 (291)
T ss_pred             CCCceEEEeCCeeec-CCchHHHHHHHHHHHhCCcEEEEEECCHH-HCcccceEecCccccCCeEEEEEEEECCC
Confidence            888888888887742 22232   2222222 3445566666655 345899997    2345566655555553

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=97.60  E-value=8.2e-05  Score=72.50  Aligned_cols=64  Identities=23%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEe-CCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMT-SELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMt-S~~t~e~t~~~l~~  186 (484)
                      |++|+||||.|+|||.+.||-.+++   .|+|+|.+.++.+.+.          ..+..+++. +....+.+++++.+
T Consensus         1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~----------~~i~~Ivvv~~~~~~~~~~~~~~~   65 (221)
T PF01128_consen    1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS----------PEIDEIVVVVPPEDIDYVEELLSK   65 (221)
T ss_dssp             EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT----------TTESEEEEEESGGGHHHHHHHHHH
T ss_pred             CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC----------CCCCeEEEEecchhHHHHHHhhcC
Confidence            6799999999999999999999999   8999999998888631          224444444 44455667776665

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=97.60  E-value=0.0017  Score=65.91  Aligned_cols=190  Identities=22%  Similarity=0.290  Sum_probs=116.5

Q ss_pred             EEEEEEcCCCCccc----cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       110 vavviLaGG~GTRL----G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      +.-||||||.||||    +...||..+.+  .+++|+||..++|+..+.         ..-..++.|+..-...+++=+.
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L--~~~~Sllq~T~~R~~~l~---------~~~~~~vVtne~~~f~v~eql~   70 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL--FGDLSLLQQTVKRLAFLG---------DIEEPLVVTNEKYRFIVKEQLP   70 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceee--CCCCcHHHHHHHHHhhcC---------CccCeEEEeCHHHHHHHHHHHh
Confidence            45799999999998    55899999766  668999999999887643         1234555566554445554444


Q ss_pred             HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCC----chHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030        186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGH----GGLYHALGATGILDTMHTRGIKHIHVYCVDNI  261 (484)
Q Consensus       186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~----Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~  261 (484)
                      +-+.-.                  ..+         +...|.|-    .=++.++      ....+.|-.-+.|+..|-+
T Consensus        71 e~~~~~------------------~~~---------illEP~gRnTApAIA~aa~------~~~~~~~d~~~lVlpsDH~  117 (333)
T COG0836          71 EIDIEN------------------AAG---------IILEPEGRNTAPAIALAAL------SATAEGGDALVLVLPSDHV  117 (333)
T ss_pred             hhhhcc------------------ccc---------eEeccCCCCcHHHHHHHHH------HHHHhCCCcEEEEecCcce
Confidence            411000                  011         23334442    1122222      2233345456889999987


Q ss_pred             ccccCCH-HHHHH------HHHcCCceEEEEEEccCCCcccceEEEE----C-CeEEEEEeccCCcccccccccCCCccc
Q psy10030        262 LVKVGDP-TFLGY------CVEQGAHCGVKVVEKITPGESLGVLCNV----D-GKHKIVEYSELGNCSVFETQDQTGRLK  329 (484)
Q Consensus       262 l~~~~Dp-~~lg~------~~~~~~~~~~~vv~k~~~~e~~G~l~~~----~-g~~~vvEyse~~~e~~~~~~~~~g~~~  329 (484)
                      .   .|. .|...      .++++.-+++-++|.+ |.-.+|=|-.-    + +-+.|-++-|-|+.+.++.--..|+. 
T Consensus       118 I---~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~-PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y-  192 (333)
T COG0836         118 I---ADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR-PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY-  192 (333)
T ss_pred             e---ccHHHHHHHHHHHHHHHHcCCEEEEecCCCC-CccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce-
Confidence            4   344 34322      2345666777777766 77677777541    1 56777788888887666554444543 


Q ss_pred             ccccceeeeeecHH-HHHHHhh
Q psy10030        330 FNLGSICNHYFSLE-CLQRMVK  350 (484)
Q Consensus       330 f~~~Ni~~~~~~l~-~l~~~~~  350 (484)
                        +.|..+++|+.+ ||+++.+
T Consensus       193 --~WNSGmF~Fra~~~l~e~~~  212 (333)
T COG0836         193 --LWNSGMFLFRASVFLEELKK  212 (333)
T ss_pred             --EeeccceEEEHHHHHHHHHh
Confidence              568888899988 5666653

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=97.57  E-value=0.0001  Score=73.18  Aligned_cols=42  Identities=33%  Similarity=0.574  Sum_probs=38.1

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      .++++|+||||.|||||.+.||.++++   .|+|++++.++.+..
T Consensus        23 ~~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~   64 (252)
T PLN02728         23 KSVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFAR   64 (252)
T ss_pred             CceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHh
Confidence            368999999999999998899999999   899999998888764

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=97.54  E-value=0.00018  Score=66.95  Aligned_cols=109  Identities=28%  Similarity=0.446  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCC
Q psy10030        111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYF  190 (484)
Q Consensus       111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~f  190 (484)
                      .+|+||||+|||||. .-|+++++   +||+++.+.++.+++.       .    =-.++.+|.+| ..|++|+.+-   
T Consensus         2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~~-------~----d~i~v~isp~t-p~t~~~~~~~---   62 (177)
T COG2266           2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRKI-------V----DEIIVAISPHT-PKTKEYLESV---   62 (177)
T ss_pred             ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHhh-------c----CcEEEEeCCCC-HhHHHHHHhc---
Confidence            579999999999997 77999999   9999999988887651       1    24566666665 5688999873   


Q ss_pred             CCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHH
Q psy10030        191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTF  270 (484)
Q Consensus       191 gl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~  270 (484)
                      |++   |                         ...| |-|-+-.. .     ..+...|. -+++.+.|=++   ..|.+
T Consensus        63 gv~---v-------------------------i~tp-G~GYv~Dl-~-----~al~~l~~-P~lvvsaDLp~---l~~~~  103 (177)
T COG2266          63 GVK---V-------------------------IETP-GEGYVEDL-R-----FALESLGT-PILVVSADLPF---LNPSI  103 (177)
T ss_pred             Cce---E-------------------------EEcC-CCChHHHH-H-----HHHHhcCC-ceEEEeccccc---CCHHH
Confidence            211   2                         2333 44433331 1     23444565 78999999775   46888


Q ss_pred             HHHHHHc
Q psy10030        271 LGYCVEQ  277 (484)
Q Consensus       271 lg~~~~~  277 (484)
                      |...++.
T Consensus       104 i~~vi~~  110 (177)
T COG2266         104 IDSVIDA  110 (177)
T ss_pred             HHHHHHH
Confidence            8776553

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=97.53  E-value=0.00046  Score=65.89  Aligned_cols=38  Identities=29%  Similarity=0.527  Sum_probs=34.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++.+|+||||+|+|||.  +|.++++   .|+|++++.++.+.
T Consensus         7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~   44 (200)
T PRK02726          7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAA   44 (200)
T ss_pred             CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence            68899999999999984  7999999   79999999998885

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=97.51  E-value=0.001  Score=62.78  Aligned_cols=39  Identities=33%  Similarity=0.661  Sum_probs=35.0

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++.+|+||||.|+||| ..||.+.++   .|+|++++.++.+.
T Consensus         3 ~~~~vILA~G~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~   41 (193)
T PRK00317          3 PITGVILAGGRSRRMG-GVDKGLQEL---NGKPLIQHVIERLA   41 (193)
T ss_pred             CceEEEEcCCCcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence            6889999999999996 269999999   89999999988875

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=97.47  E-value=0.002  Score=69.63  Aligned_cols=189  Identities=16%  Similarity=0.210  Sum_probs=109.3

Q ss_pred             CEEEEEEcCCCCccccc----cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA----DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG~----~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      ++-+||||||.||||-.    ..||.++|+  -.++|+||..++++..+        + ..=++ |.|+..-.+.+++-+
T Consensus         5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~--------~-~~~~i-ivt~~~~~~~v~~ql   72 (478)
T PRK15460          5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV--------E-CESPV-VICNEQHRFIVAEQL   72 (478)
T ss_pred             ceEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC--------C-CCCcE-EEeCHHHHHHHHHHH
Confidence            46789999999999853    469999988  34589999999987642        2 23344 557776666666666


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchH--hHHHhhcChHHHHHHc--C-CeEEEEEeCC
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGL--YHALGATGILDTMHTR--G-IKHIHVYCVD  259 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi--~~~L~~~G~l~~l~~~--G-~~~i~v~~vD  259 (484)
                      .+.+.   .+.+|                 ++      +..+-+|+-+  +.++       .+.++  + -.-+.|+..|
T Consensus        73 ~~~~~---~~~~i-----------------i~------EP~~rnTApaialaa~-------~~~~~~~~~~~~v~vlPaD  119 (478)
T PRK15460         73 RQLNK---LTENI-----------------IL------EPAGRNTAPAIALAAL-------AAKRHSPESDPLMLVLAAD  119 (478)
T ss_pred             HhcCC---ccccE-----------------Ee------cCCCCChHHHHHHHHH-------HHHHhcCCCCCeEEEeccc
Confidence            55221   11122                 22      1122223322  2222       12222  2 3578899999


Q ss_pred             CCccccCCHH-HHH-----HH-HHcCCceEEEEEEccCCCcccceEEEE---C-----CeEEEEEeccCCcccccccccC
Q psy10030        260 NILVKVGDPT-FLG-----YC-VEQGAHCGVKVVEKITPGESLGVLCNV---D-----GKHKIVEYSELGNCSVFETQDQ  324 (484)
Q Consensus       260 N~l~~~~Dp~-~lg-----~~-~~~~~~~~~~vv~k~~~~e~~G~l~~~---~-----g~~~vvEyse~~~e~~~~~~~~  324 (484)
                      .+.   .|.. |..     .. ++.+.-+++=+.|.. |.-.+|=|-.-   +     +-..|..+.|-|+...++.--.
T Consensus       120 H~I---~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~-PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~  195 (478)
T PRK15460        120 HVI---ADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL-PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA  195 (478)
T ss_pred             ccc---CCHHHHHHHHHHHHHHHhcCCEEEEecCCCC-CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH
Confidence            874   3433 322     11 223555555555554 88888887532   1     2245666777776645443222


Q ss_pred             CCcccccccceeeeeecHHHHHHHh
Q psy10030        325 TGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       325 ~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                      +|..   +-|..+++|+.+.+-+.+
T Consensus       196 ~G~y---~WNsGiF~~~a~~~l~~~  217 (478)
T PRK15460        196 SGEY---YWNSGMFLFRAGRYLEEL  217 (478)
T ss_pred             cCCE---EEecceeheeHHHHHHHH
Confidence            3422   568889999998554433

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.25  E-value=0.0028  Score=66.40  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             hcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        103 KLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       103 ~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ..+.+-++++||||||+|+|||  .+|.++++   .|+|++++.++.+..
T Consensus       168 ~~~~~~~i~~iILAGG~SsRmG--~~K~ll~~---~Gk~ll~~~l~~l~~  212 (369)
T PRK14490        168 GRAEEVPLSGLVLAGGRSSRMG--SDKALLSY---HESNQLVHTAALLRP  212 (369)
T ss_pred             cccccCCceEEEEcCCccccCC--CCcEEEEE---CCccHHHHHHHHHHh
Confidence            3343346789999999999998  48999999   899999999888853

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=97.23  E-value=0.0044  Score=60.20  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCc--hHHHHHHHH
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTD--RPTREYFER  186 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~--e~t~~~l~~  186 (484)
                      +|+||||.++||+   +|.+.++   .|+|++++.++.++...          .+.-+++.+....  +.+.+++..
T Consensus         2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~~~~~~~i~~~~~~   62 (233)
T cd02518           2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLKRSK----------LIDEIVIATSTNEEDDPLEALAKK   62 (233)
T ss_pred             EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHHhCC----------CCCeEEEECCCCcccHHHHHHHHH
Confidence            5899999999995   5999998   89999999998886411          1344444444443  667776654

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=97.22  E-value=0.0026  Score=62.20  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=50.6

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~  185 (484)
                      .++.+|++|+|.|||||.+.||-..++   .|+++|++.++.++...          .+ ..+|.++...++...++..
T Consensus         3 ~~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~~~~~~~~~~~~   68 (230)
T COG1211           3 MMVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESP----------AIDEIVVVVSPEDDPYFEKLPK   68 (230)
T ss_pred             ceEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhCc----------CCCeEEEEEChhhhHHHHHhhh
Confidence            368899999999999999999999999   99999999988886422          23 4455555556666666664

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=96.76  E-value=0.0021  Score=60.69  Aligned_cols=61  Identities=23%  Similarity=0.431  Sum_probs=49.7

Q ss_pred             EEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       111 avviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      -+|+||.|+|||+.   .+.||+++.|   .|+++++.++++++.           ..|--++...++.+|+. +||++
T Consensus         2 nAIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e-----------~gI~dI~IVvGYlkE~F-eYLkd   65 (231)
T COG4750           2 NAIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE-----------AGIDDITIVVGYLKEQF-EYLKD   65 (231)
T ss_pred             ceEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH-----------CCCceEEEEeeehHHHH-HHHHH
Confidence            37899999999974   5899999999   999999998888864           23777777779988876 46655

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=96.58  E-value=0.0023  Score=66.50  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=35.7

Q ss_pred             CCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        107 RGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       107 ~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++.+..|+||||+++|||  .+|.++++   .|+|+++++++++..
T Consensus       158 ~~~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~~  198 (346)
T PRK14500        158 QTPLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLAK  198 (346)
T ss_pred             CCCceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHHh
Confidence            346889999999999998  69999999   799999998877753

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=96.15  E-value=0.22  Score=48.37  Aligned_cols=181  Identities=12%  Similarity=0.091  Sum_probs=98.4

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG  191 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg  191 (484)
                      +|++|.|.++||.   .|-+.++   .|+|++++.++.+++.          ..+..++.+++.  +.+.++.++   +|
T Consensus         2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s----------~~~d~IvVstd~--~~i~~~a~~---~g   60 (222)
T TIGR03584         2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNS----------GLFDKVVVSTDD--EEIAEVAKS---YG   60 (222)
T ss_pred             EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhC----------CCCCEEEEeCCC--HHHHHHHHH---cC
Confidence            5889999999995   5888888   8999999999988642          124455555553  567777765   44


Q ss_pred             CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHH-cCCeEEEEEeCCCCccccCCHH-
Q psy10030        192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHT-RGIKHIHVYCVDNILVKVGDPT-  269 (484)
Q Consensus       192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~-~G~~~i~v~~vDN~l~~~~Dp~-  269 (484)
                      ..   +. |.-                +..+..--.|..+++...     ++.+.. ...+.+++++.|.++....+-. 
T Consensus        61 ~~---v~-~~r----------------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~  115 (222)
T TIGR03584        61 AS---VP-FLR----------------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQAKILKE  115 (222)
T ss_pred             CE---eE-EeC----------------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCCHHHHHH
Confidence            22   21 110                111111112333333322     233322 3468899999999985332221 


Q ss_pred             HHHHHHHcCCceEEEEEEccC-CCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030        270 FLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR  347 (484)
Q Consensus       270 ~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~  347 (484)
                      ++....+.+++..+.|++... |..  ......+|++...-......  .+|  +-   .....-|-+.++++.+.+.+
T Consensus       116 ~i~~~~~~~~ds~~sv~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~--~rQ--d~---~~~y~~nga~y~~~~~~~~~  185 (222)
T TIGR03584       116 AFELLKQPNAHFVFSVTSFAFPIQR--AFKLKENGGVEMFFPEHFNT--RSQ--DL---EEAYHDAGQFYWGKSQAWLE  185 (222)
T ss_pred             HHHHHHhCCCCEEEEeeccCCChHH--heEECCCCcEEecCCCcccC--CCC--CC---chheeeCCeEEEEEHHHHHh
Confidence            233344467899998888532 321  11222355554322111111  011  11   11224577788899887644

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=95.64  E-value=0.076  Score=50.77  Aligned_cols=117  Identities=26%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             CCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHH
Q psy10030        107 RGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       107 ~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~  185 (484)
                      ..+++.|+||.|.|||||  .+|-++|+   .|+|++.+.+++.+.        .   .. ..++.|+....+.....+.
T Consensus         3 ~~~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~--------a---~~~~vivV~g~~~~~~~~a~~~   66 (199)
T COG2068           3 PSTVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS--------A---GLDRVIVVTGHRVAEAVEALLA   66 (199)
T ss_pred             CcceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh--------c---CCCeEEEEeCcchhhHHHhhhc
Confidence            357999999999999999  79999999   999999999888763        1   24 4555555553444333332


Q ss_pred             HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      .     +.   +                       .+...|+=.=|.-.+|+.-  +......+ ..++++..|.+.+..
T Consensus        67 ~-----~~---~-----------------------~~v~npd~~~Gls~Sl~ag--~~a~~~~~-~~v~~~lgDmP~V~~  112 (199)
T COG2068          67 Q-----LG---V-----------------------TVVVNPDYAQGLSTSLKAG--LRAADAEG-DGVVLMLGDMPQVTP  112 (199)
T ss_pred             c-----CC---e-----------------------EEEeCcchhhhHhHHHHHH--HHhcccCC-CeEEEEeCCCCCCCH
Confidence            2     11   1                       1222333223333443321  12222223 599999999998776


Q ss_pred             CCHHHHHH
Q psy10030        266 GDPTFLGY  273 (484)
Q Consensus       266 ~Dp~~lg~  273 (484)
                      .+..-+..
T Consensus       113 ~t~~rl~~  120 (199)
T COG2068         113 ATVRRLIA  120 (199)
T ss_pred             HHHHHHHH
Confidence            66654443

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=93.65  E-value=0.041  Score=53.72  Aligned_cols=26  Identities=38%  Similarity=0.762  Sum_probs=21.8

Q ss_pred             eeeeeecCCcccccCCCCCCcccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      |+++++|||.|+|+|.+.||+..+++
T Consensus         1 V~aIilAaG~G~R~g~~~pKQf~~l~   26 (221)
T PF01128_consen    1 VAAIILAAGSGSRMGSGIPKQFLELG   26 (221)
T ss_dssp             EEEEEEESS-STCCTSSS-GGGSEET
T ss_pred             CEEEEeCCccchhcCcCCCCeeeEEC
Confidence            67889999999999999999999874

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>PF14134 DUF4301: Domain of unknown function (DUF4301)

Probab=92.49  E-value=0.73  Score=49.66  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=73.6

Q ss_pred             cCCCccccccC-C--CCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCch-HHHHHHHH----c-CCCCCCCCc
Q psy10030        126 DYPKGMYNIGL-P--SGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDR-PTREYFER----N-GYFGLDPAH  196 (484)
Q Consensus       126 ~~PKg~~~i~l-~--~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e-~t~~~l~~----~-~~fgl~~~~  196 (484)
                      +.|||++|.-- +  ...+|=++++|-.+-    |... |.+.+++-|   ...|. ..++.+++    + ..||.. =+
T Consensus       165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Y----a~~~-g~~~lHFTV---S~eH~~~F~~~~~~~~~~~e~~~~v~-f~  235 (513)
T PF14134_consen  165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALY----AKSN-GKANLHFTV---SPEHLDLFKKEVEEVKPKYEKKYGVK-FE  235 (513)
T ss_pred             CCCceeeecccCCCCCcCcHHHHHHHHHHH----HhcC-CeEEEEEee---CHHHHHHHHHHHHHHHHHHHHhhCce-EE
Confidence            68999988722 1  234555555554432    2222 435665544   33332 22222222    1 124543 34


Q ss_pred             EEEEEcCCc---cccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030        197 VIFFKQRSM---PCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL  262 (484)
Q Consensus       197 v~~f~Q~~~---P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l  262 (484)
                      |.|=.|..-   .++|.|..+.-.++.++..-|.|||..+..|         .+...+-|||=|+||+.
T Consensus       236 IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVv  295 (513)
T PF14134_consen  236 ISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVV  295 (513)
T ss_pred             EEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccC
Confidence            666666542   3577888888888999999999999887665         44678999999999985

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=92.01  E-value=0.1  Score=51.95  Aligned_cols=39  Identities=33%  Similarity=0.455  Sum_probs=29.2

Q ss_pred             ccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhh
Q psy10030         26 SRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGY   64 (484)
Q Consensus        26 ~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~   64 (484)
                      ...++++++||||+|+|+|.+.||.+.+++=.-++.+.+
T Consensus        21 ~~~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl   59 (252)
T PLN02728         21 KEKSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSL   59 (252)
T ss_pred             ccCceEEEEEcccccccCCCCCCcceeEECCeEHHHHHH
Confidence            345688899999999999999999999764322334433

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=90.28  E-value=0.17  Score=49.08  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             eeeeeecCCcccccCCCCCCcccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      +++++||||+|+|+|.+.||.+.+++
T Consensus         3 ~~~iIlAaG~g~R~g~~~~K~l~~l~   28 (230)
T PRK13385          3 YELIFLAAGQGKRMNAPLNKMWLDLV   28 (230)
T ss_pred             eEEEEECCeeccccCCCCCcceeEEC
Confidence            67899999999999988999999874

>KOG1462|consensus

Probab=88.15  E-value=0.75  Score=48.09  Aligned_cols=129  Identities=17%  Similarity=0.222  Sum_probs=77.2

Q ss_pred             CEEEEEEcCCCCccc---cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRL---GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRL---G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l  184 (484)
                      +...|++|||-||||   +...||.++||   .++|++.+-+..+.+        .|   +. .++.+.....+++++.+
T Consensus         9 efqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~--------~g---fteiiVv~~e~e~~~i~~al   74 (433)
T KOG1462|consen    9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQ--------AG---FTEIIVVVNEDEKLDIESAL   74 (433)
T ss_pred             HhhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHh--------cC---CeEEEEEecHHHHHHHHHHH
Confidence            355789999999997   44889999999   889999887777753        33   33 33444455667888999


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .++  +-++..+.+.    .+|+++.+              --|+.+.++..+..     .   ..+-++|+..|=+.  
T Consensus        75 ~~~--~~l~~~~~~v----~ip~~~~~--------------d~gtadsLr~Iy~k-----i---kS~DflvlsCD~Vt--  124 (433)
T KOG1462|consen   75 GSN--IDLKKRPDYV----EIPTDDNS--------------DFGTADSLRYIYSK-----I---KSEDFLVLSCDFVT--  124 (433)
T ss_pred             hcC--CcccccccEE----Eeeccccc--------------ccCCHHHHhhhhhh-----h---ccCCEEEEeccccc--
Confidence            775  4443221110    23333222              24777777665432     1   12567888888653  


Q ss_pred             cCCHH-HHHHHHHcCCce
Q psy10030        265 VGDPT-FLGYCVEQGAHC  281 (484)
Q Consensus       265 ~~Dp~-~lg~~~~~~~~~  281 (484)
                      .++|. ++..+...++-+
T Consensus       125 dv~l~~lvd~FR~~d~sl  142 (433)
T KOG1462|consen  125 DVPLQPLVDKFRATDASL  142 (433)
T ss_pred             CCCcHHHHHHHhccChhH
Confidence            23333 344444444333

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=86.11  E-value=0.43  Score=45.56  Aligned_cols=24  Identities=29%  Similarity=0.637  Sum_probs=20.9

Q ss_pred             eeeecCCcccccCCCCCCcccccc
Q psy10030         32 VIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        32 ~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      +++||||+|+|+|.++||.+.+++
T Consensus         2 aiIlAaG~s~R~~~~~~K~l~~l~   25 (217)
T TIGR00453         2 AVIPAAGRGTRFGSGVPKQYLELG   25 (217)
T ss_pred             EEEEcCcccccCCCCCCccEeEEC
Confidence            577999999999988899999763

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=84.85  E-value=0.59  Score=44.39  Aligned_cols=28  Identities=21%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             hccCCeeeeeecCCcccccCCCCCCccccc
Q psy10030         25 ISRGDVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        25 ~~~~~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      +..-++++++||||+++|+|  .||.+.++
T Consensus         4 ~~~~~i~~vILAgG~s~RmG--~~K~ll~~   31 (196)
T PRK00560          4 PMIDNIPCVILAGGKSSRMG--ENKALLPF   31 (196)
T ss_pred             ccccCceEEEECCcccccCC--CCceEEEe
Confidence            34567888999999999997  58888865

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=84.16  E-value=0.69  Score=44.55  Aligned_cols=26  Identities=38%  Similarity=0.657  Sum_probs=22.8

Q ss_pred             CeeeeeecCCcccccCCCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      ++.+++||||.|+|+|...||.+.++
T Consensus         3 ~~~~iILAaG~s~R~g~~~~K~l~~~   28 (227)
T PRK00155          3 MVYAIIPAAGKGSRMGADRPKQYLPL   28 (227)
T ss_pred             ceEEEEEcCccccccCCCCCceeeEE
Confidence            46778899999999998899999876

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=84.05  E-value=6.3  Score=38.63  Aligned_cols=88  Identities=31%  Similarity=0.304  Sum_probs=62.9

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHH-----------HH--HHHhhCCccccEEEEeCCC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLI-----------EI--AKEKFGSGCLPWFIMTSEL  175 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~-----------~l--~~~~~g~~~ipl~iMtS~~  175 (484)
                      +..+||-|==..|||   .=|++.+|   .|+|+.++.+++..+-.           +.  +-+.+|    --++|||.+
T Consensus         3 ~~~viIPAR~~STRL---pgKPLadI---~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G----~~avmT~~~   72 (247)
T COG1212           3 KFVVIIPARLASTRL---PGKPLADI---GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFG----GEAVMTSKD   72 (247)
T ss_pred             ceEEEEecchhcccC---CCCchhhh---CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC----CEEEecCCC
Confidence            577899988888888   23777888   99999999999886431           11  113455    468999987


Q ss_pred             Cc---hHHHHHHHHcCCCCCCCCcEEEEEcCCccccc
Q psy10030        176 TD---RPTREYFERNGYFGLDPAHVIFFKQRSMPCFS  209 (484)
Q Consensus       176 t~---e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~  209 (484)
                      -.   +.+.+.+++   .+++.+.+.+-.|+-.|++.
T Consensus        73 h~SGTdR~~Ev~~~---l~~~~~~iIVNvQGDeP~i~  106 (247)
T COG1212          73 HQSGTDRLAEVVEK---LGLPDDEIIVNVQGDEPFIE  106 (247)
T ss_pred             CCCccHHHHHHHHh---cCCCcceEEEEccCCCCCCC
Confidence            44   445555555   55667789999999999873

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=83.92  E-value=0.66  Score=43.74  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=23.8

Q ss_pred             eeeecCCcccccCCCCCCccccccHHHHhhhhhhc
Q psy10030         32 VIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQE   66 (484)
Q Consensus        32 ~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~   66 (484)
                      .++||||+|||+|. +||.+.+++=.-++.+.+..
T Consensus         3 aIILAgG~gsRmg~-~~K~Ll~i~GkplI~~vi~~   36 (183)
T TIGR00454         3 ALIMAGGKGTRLGG-VEKPLIEVCGRCLIDHVLSP   36 (183)
T ss_pred             EEEECCccCccCCC-CCceEeEECCEEHHHHHHHH
Confidence            56799999999975 89999987422234443333

At this time this gene appears to be present only in Archea

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=83.66  E-value=0.74  Score=49.24  Aligned_cols=39  Identities=26%  Similarity=0.517  Sum_probs=29.3

Q ss_pred             CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL   67 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L   67 (484)
                      ++.+++||||+|||++...||.+.+++=.-++.+.+..+
T Consensus         5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l   43 (456)
T PRK14356          5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRAL   43 (456)
T ss_pred             ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHH
Confidence            567788999999999999999999974322445555444

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=82.56  E-value=0.81  Score=43.49  Aligned_cols=25  Identities=48%  Similarity=0.885  Sum_probs=21.2

Q ss_pred             eeeeeecCCcccccCCCCCCccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      +++++||||+|+|+|...||.+.++
T Consensus         1 ~~~vILAaG~s~R~~~~~~K~l~~i   25 (218)
T cd02516           1 VAAIILAAGSGSRMGADIPKQFLEL   25 (218)
T ss_pred             CEEEEECCcccccCCCCCCcceeEE
Confidence            3567899999999988789988876

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=82.04  E-value=0.86  Score=48.09  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL   67 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L   67 (484)
                      ++++++||||+|+|+|...||.+.+++=.-++.+.+..+
T Consensus         5 ~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l   43 (378)
T PRK09382          5 DISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENL   43 (378)
T ss_pred             cceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHH
Confidence            467888999999999989999999875222345544333

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=81.98  E-value=0.98  Score=44.38  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             cCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030         27 RGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS   68 (484)
Q Consensus        27 ~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~   68 (484)
                      ..++.++++|+|+|||+|..-||+..+++=.-.+.|+++.+.
T Consensus         2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~   43 (230)
T COG1211           2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFL   43 (230)
T ss_pred             CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHH
Confidence            356778889999999999999999998765444566554443

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=81.40  E-value=0.94  Score=41.49  Aligned_cols=24  Identities=29%  Similarity=0.634  Sum_probs=19.9

Q ss_pred             eeeeeecCCcccccCCCCCCcccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      +++++||||.|+|+|.  ||.+.+++
T Consensus         1 ~~~vIlAgG~s~R~g~--~K~l~~~~   24 (186)
T cd04182           1 IAAIILAAGRSSRMGG--NKLLLPLD   24 (186)
T ss_pred             CeEEEECCCCCCCCCC--CceeCeeC
Confidence            3567899999999986  99998763

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=81.16  E-value=0.86  Score=44.73  Aligned_cols=24  Identities=38%  Similarity=0.775  Sum_probs=20.7

Q ss_pred             eeeecCCcccccCCCCCCcccccc
Q psy10030         32 VIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        32 ~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      +++||.|+|+|||.+-||.+..++
T Consensus         6 avILAAG~GsRlg~~~PK~Lvev~   29 (239)
T COG1213           6 AVILAAGFGSRLGPDIPKALVEVG   29 (239)
T ss_pred             EEEEecccccccCCCCCchhhhcC
Confidence            456889999999999999998763

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=80.02  E-value=1  Score=45.09  Aligned_cols=24  Identities=42%  Similarity=0.750  Sum_probs=20.5

Q ss_pred             eeeecCCcccccC----CCCCCcccccc
Q psy10030         32 VIVLAGGQGTRLG----ADYPNRIESIK   55 (484)
Q Consensus        32 ~~~~aggqg~~l~----~~~pkg~~~i~   55 (484)
                      +++||||.||||.    ..+||.+.+++
T Consensus         3 ~vILAgG~GtRl~PlS~~~~PK~ll~l~   30 (274)
T cd02509           3 PVILAGGSGTRLWPLSRESYPKQFLKLF   30 (274)
T ss_pred             EEEEcccccccCCcCCCCCCCceEeEcC
Confidence            5678999999995    57999999874

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	484
1jv1_A	505	Crystal Structure Of Human Agx1 Complexed With Udpg		1e-112
1jvd_A	522	Crystal Structure Of Human Agx2 Complexed With Udpg		1e-110
1vm8_A	534	Crystal Structure Of Udp-N-Acetylglucosamine Pyroph		1e-107
2yqc_A	486	Crystal Structure Of Uridine-Diphospho-N-Acetylgluc		3e-88
3oc9_A	405	Crystal Structure Of Putative Udp-N-Acetylglucosami		2e-69
3r2w_A	528	Crystal Strucutre Of Udp-Glucose Pyrophosphorylase		2e-11
2icx_A	469	Crystal Structure Of A Putative Udp-Glucose Pyropho		1e-09
1z90_A	469	X-Ray Structure Of Gene Product From Arabidopsis Th		2e-09
2i5k_A	488	Crystal Structure Of Ugp1p Length = 488		3e-09

>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac Length = 505

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/423 (47%), Positives = 282/423 (66%), Gaps = 20/423 (4%)
Query: 80  PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
           P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct: 73  PREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSR 132
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
           K+LFQIQAE+I KL ++A++ +G+ C+ PW+IMTS  T   T+E+F ++ YFGL   +VI
Sbjct: 133 KTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVI 192
Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311
Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
            + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct: 312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPD 371
Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431
Query: 437 WIETAGGVVVADETGNTV---------------CEIAPRVSYEGEGLEERVKGKVLQTPL 481
           W+  AGG  + DE G+ +               CEI+P +SY GEGLE  V  K    PL
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPL 490
Query: 482 LLE 484
           +++
Sbjct: 491 IID 493

>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac Length = 522

Iteration: 1
 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/440 (46%), Positives = 282/440 (64%), Gaps = 37/440 (8%)
Query: 80  PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
           P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS 
Sbjct: 73  PREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSR 132
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
           K+LFQIQAE+I KL ++A++ +G+ C+ PW+IMTS  T   T+E+F ++ YFGL   +VI
Sbjct: 133 KTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVI 192
Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311
Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
            + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct: 312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPD 371
Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431
Query: 437 WIETAGGVVVADETGNTV--------------------------------CEIAPRVSYE 464
           W+  AGG  + DE G+ +                                CEI+P +SY 
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRSATNGKSETITADVNHNLKDANDVPIQCEISPLISYA 490
Query: 465 GEGLEERVKGKVLQTPLLLE 484
           GEGLE  V  K    PL+++
Sbjct: 491 GEGLESYVADKEFHAPLIID 510

>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A Resolution Length = 534

Iteration: 1
 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/440 (45%), Positives = 277/440 (62%), Gaps = 37/440 (8%)
Query: 80  PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
           P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKG Y++GLPS 
Sbjct: 85  PRQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGXYDVGLPSH 144
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
           K+LFQIQAE+I KL ++A++  G+ C +PW+I TS  T   T+E+F ++ +FGL   +V+
Sbjct: 145 KTLFQIQAERILKLQQLAEKHHGNKCTIPWYIXTSGRTXESTKEFFTKHKFFGLKKENVV 204
Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
           FF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++    RGI  IHVYCV
Sbjct: 205 FFQQGXLPAXSFDGKIILEEKNKVSXAPDGNGGLYRALAAQNIVEDXEQRGICSIHVYCV 264
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
           DNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+ + + 
Sbjct: 265 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 323
Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
            + +   GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P+
Sbjct: 324 AQRRSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGYFIKPD 383
Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
           KPNGIK EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH  
Sbjct: 384 KPNGIKXEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALXSLHHC 443
Query: 437 WIETAGGVVVADETGNTV--------------------------------CEIAPRVSYE 464
           W+  AGG  + DE G+ +                                CEI+P +SY 
Sbjct: 444 WVLNAGGHFI-DENGSRLPAIPRSATNGKSEAITADVNHNLKDANDVPIQCEISPLISYA 502
Query: 465 GEGLEERVKGKVLQTPLLLE 484
           GEGLE  V  K    PL+++
Sbjct: 503 GEGLEGYVADKEFHAPLIID 522

>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, In The Apo-Like Form Length = 486

Iteration: 1
 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/424 (44%), Positives = 255/424 (60%), Gaps = 29/424 (6%)
Query: 69  GVQLSEVQVFPPNCLSGVNTVDASTLG-------KYRELGLKLISRGDVAVIVLAGGQGT 121
            +Q S+      N     N   ASTL         + ELGLK I  G+VAV+++AGGQGT
Sbjct: 56  AIQFSQTNSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGT 115
Query: 122 RLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP---WFIMTSELTDR 178
           RLG+  PKG +NI LPS KSLFQIQAEKI K+ ++A++   S   P   W+IMTS  T  
Sbjct: 116 RLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRN 175
Query: 179 PTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSG-EILLETRDRVARSPDGHGGLYHALG 237
            T  +F  N YFGL+   VIFF Q ++PCF+L G +ILLE ++ + +SPDG+GGLY AL 
Sbjct: 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALK 235
Query: 238 ATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLG- 296
             GILD ++++GIKHIH+YCVDN LVKV DP F+G+ + +      KVV K    ES+G 
Sbjct: 236 DNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGL 295
Query: 297 -VLCNVDGKHKIVEYSELGN--CSVFETQDQTGRLKFNLGSICNHYFSLECLQRM----V 349
            VL   + K  ++EYSE+     +  + QD + +L     +I NHY+S+E L +M    +
Sbjct: 296 IVLDQDNQKPCVIEYSEISQELANKKDPQD-SSKLFLRAANIVNHYYSVEFLNKMIPKWI 354
Query: 350 KEDAALKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFPLCE--NLVAWEVTR- 405
                L FH+A+KKIP L+ E G   +P +PNGIKLE+F+FD FP  E       EV R 
Sbjct: 355 SSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRL 414
Query: 406 DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEG 465
           DEFSPLKN+   + +D P TC        ++W+   GGV+  D  G  + E+  + SY G
Sbjct: 415 DEFSPLKNAD-GAKNDTPTTCRNHYLERSSKWVIQNGGVI--DNQG--LVEVDSKTSYGG 469
Query: 466 EGLE 469
           EGLE
Sbjct: 470 EGLE 473

>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine Pyrophosphorylase From Entamoeba Histolytica Length = 405

Iteration: 1
 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 235/402 (58%), Gaps = 13/402 (3%)
Query: 86  VNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQI 145
            NT+  +    YR  GL+LIS+G  A+I  AGGQG+RLG ++PKGM+ +     KS+FQ+
Sbjct: 14  TNTIPVTKEHYYR--GLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQM 71
Query: 146 QAEKIDKLIEIAKEKFGSG--CLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQR 203
            +E++ +L E+A E        + WF+MT+E T      YF+ + YFGL    +  F Q 
Sbjct: 72  TSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQG 131
Query: 204 SMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263
            +P    +G+IL E +D+   +P+GHGGL+ AL   GIL+ M+ +GIK+   + VDNIL 
Sbjct: 132 MLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILC 191
Query: 264 KVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQD 323
           K  DP  +GY     +   +K+V+K    E +GVL     + K+VEY+EL        Q 
Sbjct: 192 KDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTEL--TDELNKQL 249
Query: 324 QTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIK 383
             G   +N G I  + +S   L++    +  L +H+A+KK+P ++EQGI   P++ NGIK
Sbjct: 250 SNGEFIYNCGHISINGYSTSFLEKAA--EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIK 307
Query: 384 LEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAG 442
            E F FD FPL   +  +E+ R  EFS LKNS L+ + DN  T  +  + L+  +++ AG
Sbjct: 308 KEIFFFDVFPLATKVSIFEIQRFIEFSALKNS-LNESFDNVNTVKRDWYRLNIYYLKKAG 366
Query: 443 GVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
            +V  D++ + +CEI+ R S+E EGL+E  KGK +Q P +L+
Sbjct: 367 AIV--DDSKSPICEISFRKSFEEEGLKE-FKGKTIQLPFILQ 405

>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo Sapiens Length = 528

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 38/317 (11%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
           + V+ L GG GT +G   PK +  IG+ +  +   +  ++I+ L      K  +  +P  
Sbjct: 128 LVVVKLNGGLGTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHL-----NKTYNTDVPLV 180
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARS---- 225
           +M S  TD  T++  ++  +  +    +  F Q   P   ++ E LL     V+ S    
Sbjct: 181 LMNSFNTDEDTKKILQKYNHCRV---KIYTFNQSRYP--RINKESLLPVAKDVSYSGENT 235
Query: 226 ----PDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVE--QGA 279
               P GHG +Y +   +G+LDT    G ++I V  +DN+   V D   L + +    G 
Sbjct: 236 EAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATV-DLYILNHLMNPPNGK 294
Query: 280 HCG--VKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICN 337
            C   ++V  K       G L   +GK ++VE +++    V E +  +   KF + +  N
Sbjct: 295 RCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVS---KFKIFNTNN 351
Query: 338 HYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCEN 397
            + SL  ++R+ +++A     +   K   LD  G+       N I+LE  +  A    EN
Sbjct: 352 LWISLAAVKRLQEQNAIDMEIIVNAK--TLD-GGL-------NVIQLETAVGAAIKSFEN 401
Query: 398 LVAWEVTRDEFSPLKNS 414
            +   V R  F P+K +
Sbjct: 402 SLGINVPRSRFLPVKTT 418

>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose Pyrophosphorylase From Arabidopsis Thaliana With Bound Utp Length = 469

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 36/305 (11%)
Query: 117 GGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSEL 175
           GG GT +G   PK +  I +  G +   +   +I+ L      K+G  C +P  +M S  
Sbjct: 87  GGLGTTMGCTGPKSV--IEVRDGLTFLDLIVIQIENL----NNKYG--CKVPLVLMNSFN 138
Query: 176 TDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETR---DRVARSPDGHGGL 232
           T   T +  E+     +D   +  F Q   P       +   ++   D+    P GHG +
Sbjct: 139 THDDTHKIVEKYTNSNVD---IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDV 195
Query: 233 YHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPG 292
           + AL  +G LDT  ++G +++ V   DN L  + D T L + ++      ++V  K    
Sbjct: 196 FPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 254
Query: 293 ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKED 352
              G L + +GK +++E +++ +  V E +      KF + +  N + +L+ ++++V+ D
Sbjct: 255 VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE---KFKIFNTNNLWVNLKAIKKLVEAD 311
Query: 353 AALKFHMARKKIPCLDEQGISQRPNKPNGIK---LEKFLFDAFPLCENLVAWEVTRDEFS 409
            ALK  +    IP          P + +G+K   LE     A    +N +   V R  F 
Sbjct: 312 -ALKMEI----IP---------NPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFL 357
Query: 410 PLKNS 414
           P+K S
Sbjct: 358 PVKAS 362

>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g03250, A Putative Udp-Glucose Pyrophosphorylase Length = 469

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 36/305 (11%)
Query: 117 GGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSEL 175
           GG GT +G   PK +  I +  G +   +   +I+ L      K+G  C +P  +M S  
Sbjct: 87  GGLGTTMGCTGPKSV--IEVRDGLTFLDLIVIQIENL----NNKYG--CKVPLVLMNSFN 138
Query: 176 TDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETR---DRVARSPDGHGGL 232
           T   T +  E+     +D   +  F Q   P       +   ++   D+    P GHG +
Sbjct: 139 THDDTHKIVEKYTNSNVD---IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDV 195
Query: 233 YHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPG 292
           + AL  +G LDT  ++G +++ V   DN L  + D T L + ++      ++V  K    
Sbjct: 196 FPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 254
Query: 293 ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKED 352
              G L + +GK +++E +++ +  V E +      KF + +  N + +L+ ++++V+ D
Sbjct: 255 VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE---KFKIFNTNNLWVNLKAIKKLVEAD 311
Query: 353 AALKFHMARKKIPCLDEQGISQRPNKPNGIK---LEKFLFDAFPLCENLVAWEVTRDEFS 409
            ALK  +    IP          P + +G+K   LE     A    +N +   V R  F 
Sbjct: 312 -ALKMEI----IP---------NPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFL 357
Query: 410 PLKNS 414
           P+K S
Sbjct: 358 PVKAS 362

>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p Length = 488

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 138/306 (45%), Gaps = 24/306 (7%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
           +AV+ L GG GT +G   PK +  I +  G +   +   +I+ L      ++ S  +P  
Sbjct: 93  LAVLKLNGGLGTSMGCVGPKSV--IEVREGNTFLDLSVRQIEYL----NRQYDSD-VPLL 145
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRV---ARSP 226
           +M S  TD+ T    ++   +  +   +  F Q   P       + + T       A  P
Sbjct: 146 LMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYP 202
Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
            GHG L+ +L  +G LD +  +G + + V   DN+   V D   L + +E GA   +++ 
Sbjct: 203 PGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATV-DLKILNHMIETGAEYIMELT 261
Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346
           +K       G L + DG+ +++E +++    + E ++      FN     N + +L+ ++
Sbjct: 262 DKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTN---NLWINLKAVK 318
Query: 347 RMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD 406
           R++ E + L+  +    IP  +++ I++  ++ N ++LE     A    +      V R 
Sbjct: 319 RLI-ESSNLEMEI----IP--NQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRS 371
Query: 407 EFSPLK 412
            F P+K
Sbjct: 372 RFLPVK 377

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	484
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	1e-144
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	6e-06
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	1e-140
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	2e-06
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	1e-132
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	2e-04
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	4e-96
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	3e-06
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	4e-92
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	1e-04
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	1e-91
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	3e-06
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	3e-88
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	6e-05
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	2e-87
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	4e-04
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	6e-80
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	7e-05
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	1e-04
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	1e-04
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	2e-04
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	3e-04
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	4e-04
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	5e-04
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	8e-04

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505

 Score =  422 bits (1085), Expect = e-144
 Identities = 203/454 (44%), Positives = 280/454 (61%), Gaps = 19/454 (4%)

Query: 48  PNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISR 107
              +     Q  I    Q      +       P  + G  T D   L  +   GL  IS+
Sbjct: 42  FEELNFF-FQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQ 100

Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-L 166
             VAV++LAGGQGTRLG  YPKGMY++GLPS K+LFQIQAE+I KL ++A++ +G+ C +
Sbjct: 101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCII 160

Query: 167 PWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSP 226
           PW+IMTS  T   T+E+F ++ YFGL   +VIFF+Q  +P  S  G+I+LE +++V+ +P
Sbjct: 161 PWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAP 220

Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
           DG+GGLY AL A  I++ M  RGI  IHVYCVDNILVKV DP F+G+C+++GA CG KVV
Sbjct: 221 DGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVV 280

Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346
           EK  P E +GV+C VDG +++VEYSE+      + +   GRL FN G+I NH+F++  L+
Sbjct: 281 EKTNPTEPVGVVCRVDGVYQVVEYSEISLA-TAQKRSSDGRLLFNAGNIANHFFTVPFLR 339

Query: 347 RMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR 405
            +V      L+ H+A+KKIP +D QG   +P+KPNGIK+EKF+FD F   +  V +EV R
Sbjct: 340 DVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLR 399

Query: 406 -DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETG------------- 451
            DEFSPLKN+   +  DNP T   A+ +LH  W+  AGG  + +                
Sbjct: 400 EDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDAND 459

Query: 452 -NTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
               CEI+P +SY GEGLE  V  K    PL+++
Sbjct: 460 VPIQCEISPLISYAGEGLESYVADKEFHAPLIID 493

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 8   TVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKI 56
           T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YP  +  + +
Sbjct: 81  TRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGL 129

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405

 Score =  407 bits (1046), Expect = e-140
 Identities = 148/392 (37%), Positives = 232/392 (59%), Gaps = 11/392 (2%)

Query: 96  KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
           ++   GL+LIS+G  A+I  AGGQG+RLG ++PKGM+ +     KS+FQ+ +E++ +L E
Sbjct: 22  EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQE 81

Query: 156 IAKEKFGSGC--LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGE 213
           +A E        + WF+MT+E T      YF+ + YFGL    +  F Q  +P    +G+
Sbjct: 82  LASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGK 141

Query: 214 ILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGY 273
           IL E +D+   +P+GHGGL+ AL   GIL+ M+ +GIK+   + VDNIL K  DP  +GY
Sbjct: 142 ILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGY 201

Query: 274 CVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLG 333
                +   +K+V+K    E +GVL     + K+VEY+EL +    +  +  G   +N G
Sbjct: 202 MDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDELNKQLSN--GEFIYNCG 259

Query: 334 SICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFP 393
            I  + +S   L++  +    L +H+A+KK+P ++EQGI   P++ NGIK E F FD FP
Sbjct: 260 HISINGYSTSFLEKAAEYQ--LPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFP 317

Query: 394 LCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGN 452
           L   +  +E+ R  EFS LKNS  + + DN  T  +  + L+  +++ AG +V  D++ +
Sbjct: 318 LATKVSIFEIQRFIEFSALKNSL-NESFDNVNTVKRDWYRLNIYYLKKAGAIV--DDSKS 374

Query: 453 TVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
            +CEI+ R S+E EGL+E  KGK +Q P +L+
Sbjct: 375 PICEISFRKSFEEEGLKE-FKGKTIQLPFILQ 405

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 16 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
          ++   GL+LIS+G  A+I  AGGQG+RLG ++P
Sbjct: 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHP 54

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486

 Score =  389 bits (1000), Expect = e-132
 Identities = 182/453 (40%), Positives = 263/453 (58%), Gaps = 25/453 (5%)

Query: 46  DYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLI 105
           + P ++ S  ++  I       +    +++   P    +    +    L  + ELGLK I
Sbjct: 44  EEPAKLIST-VEQAIQFSQTNSTSRNFTQL---PNEQTASTLDLSKDILQNWTELGLKAI 99

Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
             G+VAV+++AGGQGTRLG+  PKG +NI LPS KSLFQIQAEKI K+ ++A++   S  
Sbjct: 100 GNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTK 159

Query: 166 ---LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGE-ILLETRDR 221
              + W+IMTS  T   T  +F  N YFGL+   VIFF Q ++PCF+L G  ILLE ++ 
Sbjct: 160 KPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNS 219

Query: 222 VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
           + +SPDG+GGLY AL   GILD ++++GIKHIH+YCVDN LVKV DP F+G+ + +    
Sbjct: 220 ICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDL 279

Query: 282 GVKVVEKITPGESLGVLC--NVDGKHKIVEYSELGNCSVFETQDQ-TGRLKFNLGSICNH 338
             KVV K    ES+G++     + K  ++EYSE+      +   Q + +L     +I NH
Sbjct: 280 ATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNH 339

Query: 339 YFSLECLQRMVKEDAA----LKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFP 393
           Y+S+E L +M+ +  +    L FH+A+KKIP L+ E G   +P +PNGIKLE+F+FD FP
Sbjct: 340 YYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFP 399

Query: 394 LC--ENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADET 450
                     EV R DEFSPLKN+   + +D P TC        ++W+   GGV+     
Sbjct: 400 SVELNKFGCLEVDRLDEFSPLKNAD-GAKNDTPTTCRNHYLERSSKWVIQNGGVIDNQG- 457

Query: 451 GNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLL 483
              + E+  + SY GEGLE  V GK  +   ++
Sbjct: 458 ---LVEVDSKTSYGGEGLEF-VNGKHFKNGDII 486

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 6   VNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKI 56
              +    L  + ELGLK I  G+VAV+++AGGQGTRLG+  P    +I++
Sbjct: 80  TLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIEL 130

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484

 Score =  297 bits (762), Expect = 4e-96
 Identities = 74/407 (18%), Positives = 136/407 (33%), Gaps = 52/407 (12%)

Query: 90  DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK 149
               L      G          V+ L GG GT +G + PK +  +   +G++     A +
Sbjct: 57  SLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQV--KNGQTFLDFTALQ 114

Query: 150 IDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209
           ++   ++         +P+ +M S  T   T+ +  +           I   Q  +P   
Sbjct: 115 LEHFRQVRNCN-----VPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIR 169

Query: 210 LSGE--ILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267
                 +  E        P GHG +Y  L ++G LD +  +G +++ +   DN L    D
Sbjct: 170 QDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLD 228

Query: 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN----------VDGKHKIVEYSELGNCS 317
              L Y  E+     ++V  +    +  G L               +  + E ++     
Sbjct: 229 VRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKED 288

Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLD--EQGISQR 375
               Q+      FN  +I  +   L+ +         +   +   ++P +   +    Q 
Sbjct: 289 EDSFQNIAKHCFFNTNNIWINLMELKKM---------MDEQLGVLRLPVMRNPKTVNPQD 339

Query: 376 PNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHA 435
                  +LE  +  A  L +   A  V R+ F+P+K             C   +     
Sbjct: 340 SQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKT------------CSDLLALRSD 387

Query: 436 RWIETAGGVVVADETGNTVCEIAPRVSYEGE------GLEERVKGKV 476
            +  T    +V  E  N      P +  +GE      G E+ VKG V
Sbjct: 388 AYQVTEDQRLVLCEERN---GKPPAIDLDGEHYKMIDGFEKLVKGGV 431

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 13/39 (33%)

Query: 10 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
              L      G          V+ L GG GT +G + P
Sbjct: 57 SLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGP 95

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528

 Score =  288 bits (739), Expect = 4e-92
 Identities = 74/407 (18%), Positives = 144/407 (35%), Gaps = 54/407 (13%)

Query: 83  LSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
               +      +               + V+ L GG GT +G   PK +  IG+ +  + 
Sbjct: 101 PPEDSIQPYEKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSL--IGVRNENTF 158

Query: 143 FQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQ 202
             +  ++I+ L +       +  +P  +M S  TD  T++  ++  +  +    +  F Q
Sbjct: 159 LDLTVQQIEHLNKTY-----NTDVPLVLMNSFNTDEDTKKILQKYNHCRVK---IYTFNQ 210

Query: 203 RSMPCFSLSG------EILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVY 256
              P  +         ++     +  A  P GHG +Y +   +G+LDT    G ++I V 
Sbjct: 211 SRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVS 270

Query: 257 CVDNILVKVGDPT---FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
            +DN+   V        +     +     ++V  K       G L   +GK ++VE +++
Sbjct: 271 NIDNLGATVDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQV 330

Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDA-ALKFHMARKKIPCLDEQGI 372
               V E +  +    FN     N + SL  ++R+ +++A  ++  +  K +        
Sbjct: 331 PKAHVDEFKSVSKFKIFN---TNNLWISLAAVKRLQEQNAIDMEIIVNAKTL-------- 379

Query: 373 SQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHA 432
                  N I+LE  +  A    EN +   V R  F P+K            T    +  
Sbjct: 380 ---DGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVK------------TTSDLLLV 424

Query: 433 LHARWIETAGGVVVADETGNTVCEIAPRVSYEGE-----GLEERVKG 474
           +   +   AG + ++           P V              R + 
Sbjct: 425 MSNLYSLNAGSLTMS---EKREFPTVPLVKLGSSFTKVQDYLRRFES 468

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 3   LSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
               +      +               + V+ L GG GT +G   P
Sbjct: 101 PPEDSIQPYEKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGP 146

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488

 Score =  286 bits (733), Expect = 1e-91
 Identities = 74/407 (18%), Positives = 147/407 (36%), Gaps = 39/407 (9%)

Query: 73  SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
           S       + +   N  +        +    + +   +AV+ L GG GT +G   PK + 
Sbjct: 56  SSRTTLEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVI 115

Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGL 192
            +    G +   +   +I+ L            +P  +M S  TD+ T    ++   +  
Sbjct: 116 EV--REGNTFLDLSVRQIEYLNRQY-----DSDVPLLLMNSFNTDKDTEHLIKK---YSA 165

Query: 193 DPAHVIFFKQRSMPCFSLSGEILLET---RDRVARSPDGHGGLYHALGATGILDTMHTRG 249
           +   +  F Q   P       + + T       A  P GHG L+ +L  +G LD +  +G
Sbjct: 166 NRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQG 225

Query: 250 IKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVE 309
            + + V   DN L    D   L + +E GA   +++ +K       G L + DG+ +++E
Sbjct: 226 REILFVSNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLE 284

Query: 310 YSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLD 368
            +++    + E ++      FN     N + +L+ ++R+++     ++    +K I    
Sbjct: 285 VAQVPKEHIDEFKNIRKFTNFN---TNNLWINLKAVKRLIESSNLEMEIIPNQKTIT--- 338

Query: 369 EQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQ 428
                +  ++ N ++LE     A    +      V R  F P+K            TC  
Sbjct: 339 -----RDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVK------------TCSD 381

Query: 429 AVHALHARWIETAGGVVVADETGNTVCEI-APRVSYEGEGLEERVKG 474
            +      +    G + +          I       +  G   R+  
Sbjct: 382 LLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVSGFNARIPH 428

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 16  KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
              +    + +   +AV+ L GG GT +G   P
Sbjct: 79  IISQQPENVSNLSKLAVLKLNGGLGTSMGCVGP 111

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505

 Score =  275 bits (705), Expect = 2e-87
 Identities = 67/382 (17%), Positives = 121/382 (31%), Gaps = 43/382 (11%)

Query: 99  ELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAK 158
           E    ++      V+ L GG GT +G    K +  +    GK+     A ++  L +   
Sbjct: 67  ECDNAVLQS--TVVLKLNGGLGTGMGLCDAKTLLEVK--DGKTFLDFTALQVQYLRQHCS 122

Query: 159 EKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVI-FFKQRSMPCFSLSGE--IL 215
           E      L + +M S  T   T+ + +    +            Q  +P           
Sbjct: 123 EH-----LRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAA 177

Query: 216 LETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCV 275
                    +P GHG +Y AL  +G L  +  +G +++ V   DN L    D   L Y  
Sbjct: 178 WAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDN-LGATIDKRVLAYME 236

Query: 276 EQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS-----------ELGNCSVFETQDQ 324
           ++     ++V  +    +  G L       K  +             E   C   + +  
Sbjct: 237 KEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF 296

Query: 325 TGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKL 384
               K++  +  N +  L  L   ++E          +    +D          P   +L
Sbjct: 297 QDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDS----SNSASPKVYQL 352

Query: 385 EKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGV 444
           E  +  A  + E+  A  V R  F+P+K             C   +      ++ T    
Sbjct: 353 ETAMGAAIAMFESASAIVVPRSRFAPVKT------------CADLLALRSDAYVVTDDFR 400

Query: 445 VVADETGNTVCEIAPRVSYEGE 466
           +V D   +      P V  +  
Sbjct: 401 LVLD---DRCHGHPPVVDLDSA 419

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 19 ELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
          E    ++      V+ L GG GT +G    
Sbjct: 67 ECDNAVLQS--TVVLKLNGGLGTGMGLCDA 94

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630

 Score =  259 bits (663), Expect = 6e-80
 Identities = 74/498 (14%), Positives = 144/498 (28%), Gaps = 78/498 (15%)

Query: 42  RLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELG 101
                YP  +    I+       +E   V  + +++ P    +       +        G
Sbjct: 50  MFSNMYPGGVAQ-YIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAG 108

Query: 102 LKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKF 161
             ++       +++AGG G RLG    K    +   +  +          ++        
Sbjct: 109 TAML--CKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRV-------- 158

Query: 162 GSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLS-GEILLETRD 220
           G   +P+ IMTS+ T   T +         L+  ++   KQ  + CF+ S   + L+   
Sbjct: 159 GGKEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETG 215

Query: 221 RVARSPDGHGGLYHALGATG------------------ILDTMHTRGIKHIHVYCVDNIL 262
           ++ R P GHG ++  +                      +++     G + I      N  
Sbjct: 216 KLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAG 275

Query: 263 VKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGK------HKIVEYSELGNC 316
             +  P  L    E         + +  P E +G+LC              VEY+     
Sbjct: 276 ATITIPISLALSAEHSLDMNFTCIPR-VPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEV 334

Query: 317 SVFETQDQTGRLKFNLGSICNHYFSLECL--------QRMVKEDAALKFHMARKKIPCLD 368
           S        G    +         S+  L         R+ +    +   +  K      
Sbjct: 335 SR-ALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSD--- 390

Query: 369 EQGISQRPNKPNGIKLEKFLFDA-FPLCENLVAWEVTRDE---FSPLKNSPLD------- 417
                 R +     ++E  + D      E+      T  E   + P+KNS  +       
Sbjct: 391 ----ETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQ 446

Query: 418 -SASDNPVTCCQAVHALHARWIETAGGVVVADETGNTV-------CEIAPRVSYE---GE 466
            + +    T   A + L  R ++  G  +                  + P +  +     
Sbjct: 447 GNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCAS 506

Query: 467 GLEERVKGKVLQTPLLLE 484
                   +V  TP  + 
Sbjct: 507 SGSLDDLARVFPTPEKVH 524

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAK 158
           ++++I+LA G  TR      K    +G      L+    + +       K
Sbjct: 3   EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSSFYPFKK 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 66/501 (13%), Positives = 116/501 (23%), Gaps = 192/501 (38%)

Query: 17  YRELGLKLISRGD--VAVIVLAGGQGTRLGADYPNRIESIKIQ----VYIGHGYQELSGV 70
            R     L+S+ +  V   V        L  +Y   +  IK +      +   Y E    
Sbjct: 65  LRLFWT-LLSKQEEMVQKFV-----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 71  QLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKG 130
             ++ QVF        N        K R+  L+L    +V +                 G
Sbjct: 119 LYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLI----------------DG 157

Query: 131 MYNIGLPSGKSLFQIQAEKIDKLIEIAKE------KFGSGCLP----------WFIMTSE 174
           +  +G  SGK+   +        ++   +         +   P           + +   
Sbjct: 158 V--LG--SGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 175 LTDRPTREYFERNGYFGLDPAHVIFFKQRSMP-C---------------FSLSGEILLET 218
            T R       +     +        K +    C               F+LS +ILL T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 219 RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQG 278
           R +                   + D +      HI +                       
Sbjct: 273 RFK------------------QVTDFLSAATTTHISL----------------------- 291

Query: 279 AHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL------GN---CSVF--ETQDQTGR 327
                     +TP E   +L             +L       N    S+     +D    
Sbjct: 292 ----DHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 328 LKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKF 387
                       +      + V  D   K     +    L+         +P      + 
Sbjct: 344 WD---------NW------KHVNCD---KLTTIIES--SLNVL-------EPA---EYRK 373

Query: 388 LFDA---FP---------LCENLVAW-----EVTRDEFSPLKNSPLDSASDNPVTC---- 426
           +FD    FP         L    + W            + L    L        T     
Sbjct: 374 MFDRLSVFPPSAHIPTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 427 --------CQAVHALHARWIE 439
                    +  +ALH   ++
Sbjct: 431 IYLELKVKLENEYALHRSIVD 451

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEI 156
           + V VL GG G R+G +  K    +    GK L +   EK      +
Sbjct: 1   MKVAVLVGGVGRRIGME--KTEVMLC---GKKLIEWVLEKYSPFQTV 42

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 106 SRGDVAVIVLAGGQGTRLGADYPK 129
             G+V  IV A G G RL    PK
Sbjct: 4   EAGEVVAIVPAAGSGERLAVGVPK 27

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
           V+VI+LAGGQG R+    PK    +    G+ +         +  ++ +++
Sbjct: 5   VSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSRMPEVKEIV 52

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 9/51 (17%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
              I+LA G+G R+  + PK    I    G+ LF+      +++E ID ++
Sbjct: 14  NVAILLAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLKSEAIDGVV 61

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
           +  DV  +V A G G R+  + PK   +IG    +++ +      +   ++ +++
Sbjct: 4   THLDVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLAHPRVKRVV 55

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 110 VAVIVLAGGQGTRLGADYPK 129
              +V A G G RL A  PK
Sbjct: 3   TVAVVPAAGSGERLRAGRPK 22

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 110 VAVIVLAGGQGTRLGADYPK 129
              ++ A G G R GAD PK
Sbjct: 7   NIALIPAAGIGVRFGADKPK 26

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Length = 201

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 113 IVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
            VLAGG+  R G D  K +Y I    GK + +   E    + +
Sbjct: 18  YVLAGGKSKRFGED--KLLYEIK---GKKVIERVYETAKSVFK 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	484
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	100.0
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	100.0
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	100.0
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	100.0
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	100.0
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	100.0
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	100.0
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	100.0
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.66
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.25
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.19
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.12
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.07
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.06
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.04
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.03
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.02
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	98.99
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	98.94
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	98.93
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	98.93
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	98.89
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.88
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	98.86
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	98.85
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	98.85
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	98.81
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	98.81
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	98.79
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	98.75
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	98.75
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	98.73
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	98.71
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	98.7
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	98.68
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	98.6
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	98.59
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	98.58
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	98.56
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	98.41
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	98.4
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	98.38
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	98.36
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	98.35
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	98.32
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	98.31
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	98.3
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	98.3
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	98.27
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	98.25
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	98.24
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	98.24
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	98.18
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	98.18
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	98.14
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	98.13
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	98.1
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	98.08
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	98.05
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	97.99
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	97.81
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	97.67
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	97.62
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	97.55
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	97.5
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	97.25
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	97.11
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	92.19
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	90.35
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	90.15
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	89.67
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	89.46
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	89.4
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	88.84
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	88.32
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	87.88
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	87.87
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	87.01
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	85.37
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	85.19
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	83.6
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	83.58
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	81.6
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	81.42
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	80.9
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	80.7
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	80.55

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=100.00  E-value=4.4e-107  Score=841.94  Aligned_cols=382  Identities=39%  Similarity=0.638  Sum_probs=366.9

Q ss_pred             HHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHh-hCC-ccccEEEEe
Q psy10030         95 GKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEK-FGS-GCLPWFIMT  172 (484)
Q Consensus        95 ~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~-~g~-~~ipl~iMt  172 (484)
                      .+|+++|+++|++||+|||+||||+|||||++.||+|+||++|+++||||+++++|+++|+++.++ +|. +.|||+|||
T Consensus        21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMt  100 (405)
T 3oc9_A           21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMT  100 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEE
T ss_pred             HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999999999999998765 443 789999999


Q ss_pred             CCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeE
Q psy10030        173 SELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKH  252 (484)
Q Consensus       173 S~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~  252 (484)
                      |++||+.|++||++|+|||++++||++|+|+++||+|.+|+++++++++++|+|+||||+|.+|.++|+|++|.++|++|
T Consensus       101 S~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Giey  180 (405)
T 3oc9_A          101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKY  180 (405)
T ss_dssp             CTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCE
T ss_pred             CCccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccc
Q psy10030        253 IHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNL  332 (484)
Q Consensus       253 i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~  332 (484)
                      ++|+|+||+|++++||.|+|||++++++++++|++|++|+|++|+||++||+++||||+|++++  +++++.+|.+.|++
T Consensus       181 i~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~~~vvEysei~~e--~e~~~~~g~l~fn~  258 (405)
T 3oc9_A          181 SVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDE--LNKQLSNGEFIYNC  258 (405)
T ss_dssp             EEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGCCTT--TTCBCTTSCBSSCE
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCeeEEEEEeeCCHH--HhhcCCCCceeecc
Confidence            9999999988999999999999999999999999999999999999999999999999999998  88899999999999


Q ss_pred             cceeeeeecHHHHHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccc
Q psy10030        333 GSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPL  411 (484)
Q Consensus       333 ~Ni~~~~~~l~~l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPv  411 (484)
                      +|||+|+|+++||++++  ...||+|+|.|||||+|++|+.+||++|||+|||+||||+|++++++.+++|+|+ ||+||
T Consensus       259 ~Ni~~h~fs~~fL~~i~--~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~~~~~~eV~R~~eF~Pl  336 (405)
T 3oc9_A          259 GHISINGYSTSFLEKAA--EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEFSAL  336 (405)
T ss_dssp             EEEEEEEEEHHHHHHHT--TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSCEEEEECCHHHHCCBC
T ss_pred             ceeEeeecCHHHHHHhh--hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhccceEEEEEChHhcccce
Confidence            99999999999999998  4679999999999999999999999999999999999999999999999999999 99999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccceeeecCCccccccCcccCCCcccC
Q psy10030        412 KNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE  484 (484)
Q Consensus       412 Kn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~vsy~gE~l~~~~~~~~~~~p~~~~  484 (484)
                      ||+++. +.|||+|||++|+++|++||+++|++|. ++. +..|||||++||+||||++ ++|++|+.|++|+
T Consensus       337 Kn~~g~-~~dsp~tar~~l~~~~~~wl~~ag~~~~-~~~-~~~~Eispl~sy~ge~l~~-~~~~~~~~p~~~~  405 (405)
T 3oc9_A          337 KNSLNE-SFDNVNTVKRDWYRLNIYYLKKAGAIVD-DSK-SPICEISFRKSFEEEGLKE-FKGKTIQLPFILQ  405 (405)
T ss_dssp             CCCTTS-SSSSHHHHHHHHHHHHHHHHHHTTCEEE-CSS-CCCEEECTTTCSSSGGGGG-GTTCEEESCEEEC
T ss_pred             ecCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCEEc-CCC-CccEEeCcccccCccCccc-cCCcEecCccccC
Confidence            999988 7899999999999999999999999994 331 3579999999999999996 9999999999985

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=100.00  E-value=1e-99  Score=809.37  Aligned_cols=403  Identities=44%  Similarity=0.787  Sum_probs=380.5

Q ss_pred             ccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHH
Q psy10030         74 EVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL  153 (484)
Q Consensus        74 ~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l  153 (484)
                      .++|+|+..+.++.+.+++++.+|++.|+++|++||++||+||||+|||||++.||+|+||++|+++||||+++++|+++
T Consensus        68 ~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~  147 (486)
T 2yqc_A           68 NFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKI  147 (486)
T ss_dssp             CEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHH
T ss_pred             cccCCChhhccccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHH
Confidence            48999988888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC--C-ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCC-cccccCCCcceeccCCC
Q psy10030        154 IEIAKEKFG--S-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSG-EILLETRDRVARSPDGH  229 (484)
Q Consensus       154 ~~l~~~~~g--~-~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g-~~~l~~~~~i~~~P~G~  229 (484)
                      ++++.+++|  + +.|||+||||++||+.|++||++|+|||+++++|+||+|+++||++.+| ++++++++.++|+|+||
T Consensus       148 ~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~  227 (486)
T 2yqc_A          148 EQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGN  227 (486)
T ss_dssp             HHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCG
T ss_pred             HHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCc
Confidence            998877777  3 8899999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             chHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE--CCeEEE
Q psy10030        230 GGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV--DGKHKI  307 (484)
Q Consensus       230 Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~--~g~~~v  307 (484)
                      ||+|.+|.++|+|++|.++|++|++|+|+||+|++++||.|+|||+.++++++++|++|++|+|++|++|++  +|+++|
T Consensus       228 Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~v  307 (486)
T 2yqc_A          228 GGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCV  307 (486)
T ss_dssp             GGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEE
T ss_pred             hHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998  999999


Q ss_pred             EEeccCCcccccccccCC--CcccccccceeeeeecHHHHHHHhhc-ccc---chhhhhccCCCccC-CCCCeecCCCCc
Q psy10030        308 VEYSELGNCSVFETQDQT--GRLKFNLGSICNHYFSLECLQRMVKE-DAA---LKFHMARKKIPCLD-EQGISQRPNKPN  380 (484)
Q Consensus       308 vEyse~~~e~~~~~~~~~--g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~---Lp~~~~~K~ip~~d-~~g~~~~p~~pn  380 (484)
                      |||+|++++ .++..+++  |.+.|+++|||||||++++|++++.. ...   ||+|+|+|+|||+| ++|..++|++||
T Consensus       308 vEy~E~~~~-~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~~p~~pn  386 (486)
T 2yqc_A          308 IEYSEISQE-LANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPN  386 (486)
T ss_dssp             ECGGGSCHH-HHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEECCSSCC
T ss_pred             EEEecCCHH-HhhcccccccccccccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCccccccCeeccCCCCC
Confidence            999999998 66666665  77889999999999999999994443 556   99999999999999 579999999999


Q ss_pred             cchhhhhhhcccccCC--ceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEE
Q psy10030        381 GIKLEKFLFDAFPLCE--NLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEI  457 (484)
Q Consensus       381 ~~klE~~i~D~~~~~~--~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~iei  457 (484)
                      |+|||+||||+|++++  ++++++|+|+ ||+||||+++. +.|||+|||.+||++|++||+++|+++ .++   ..|||
T Consensus       387 ~~klE~~~~d~~~~~~l~~~~~~~V~R~~~FsPvKn~~~~-~~dsp~ta~~~l~~~~~~~l~~aG~~~-~~~---~~~ei  461 (486)
T 2yqc_A          387 GIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSPLKNADGA-KNDTPTTCRNHYLERSSKWVIQNGGVI-DNQ---GLVEV  461 (486)
T ss_dssp             EEEEECCGGGGGGGSCGGGEEEEEECHHHHCCBCCSCTTS-SSSSHHHHHHHHHHHHHHHHHHTTCEE-CTT---CCCBC
T ss_pred             eeeeeehHhhHHhhcccCceEEEEECcccceeeecCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCee-cCC---CcEEE
Confidence            9999999999999999  9999999997 99999999987 789999999999999999999999999 332   36999


Q ss_pred             ccceeeecCCccccccCcccCCCccc
Q psy10030        458 APRVSYEGEGLEERVKGKVLQTPLLL  483 (484)
Q Consensus       458 sp~vsy~gE~l~~~~~~~~~~~p~~~  483 (484)
                      ||+|||+||||+ .++||+|+.|++|
T Consensus       462 sp~~sy~ge~l~-~~~~~~~~~~~~~  486 (486)
T 2yqc_A          462 DSKTSYGGEGLE-FVNGKHFKNGDII  486 (486)
T ss_dssp             CTTTCSSSTTCG-GGTTCEECTTCBC
T ss_pred             cceeeECCCCch-hhcCccccCCccC
Confidence            999999999999 8899999999986

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=100.00  E-value=4e-98  Score=799.84  Aligned_cols=408  Identities=49%  Similarity=0.893  Sum_probs=385.5

Q ss_pred             cccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030         73 SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus        73 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++++|+|+..+.++.+ +.+++.+|+++|+++|++||+++|+||||+|||||++.||+|+||++++++||||+++++|++
T Consensus        67 ~~i~p~p~~~~~~~~~-~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~  145 (505)
T 1jv1_A           67 ARMEPVPREVLGSATR-DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILK  145 (505)
T ss_dssp             -CCBCCCGGGEEETTT-TGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHH
T ss_pred             ccccCCChHhcccccC-ChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHH
Confidence            4689999888887766 678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC-ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCch
Q psy10030        153 LIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGG  231 (484)
Q Consensus       153 l~~l~~~~~g~-~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Gg  231 (484)
                      +|+++.++||. +.+||+||||++||+.|++||++|++||+++++|++|+|+++||++.+|++++++++.++|+|+||||
T Consensus       146 lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG  225 (505)
T 1jv1_A          146 LQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGG  225 (505)
T ss_dssp             HHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGG
T ss_pred             HHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchH
Confidence            99999888886 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEec
Q psy10030        232 LYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS  311 (484)
Q Consensus       232 i~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEys  311 (484)
                      +|++|.++|++++|+++|++|++|+|+||+|++++||.++|||..++++++++|++|+.+++++|+||.++|++++|||+
T Consensus       226 ~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~  305 (505)
T 1jv1_A          226 LYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYS  305 (505)
T ss_dssp             HHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGG
T ss_pred             HHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEECCeEEEEEEe
Confidence            99999999999999999999999999999989999999999999999999999999888999999999999999999999


Q ss_pred             cCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhc
Q psy10030        312 ELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFD  390 (484)
Q Consensus       312 e~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D  390 (484)
                      |++++ .++..+++|.+.|+++|||||||++++|+++.+. ...||+|+|+|++||+|++|+.++|++|||+|||+||||
T Consensus       306 E~p~~-~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~i~d  384 (505)
T 1jv1_A          306 EISLA-TAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFD  384 (505)
T ss_dssp             GSCHH-HHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGG
T ss_pred             eCCHH-HhhhcccccccccceeeEEEEEecHHHHHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHHHHHH
Confidence            99998 7677777888999999999999999999999875 678999999999999998899999999999999999999


Q ss_pred             ccccCCceEEEEEecc-ccccccCCCCCCC-CCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC---------------CCe
Q psy10030        391 AFPLCENLVAWEVTRD-EFSPLKNSPLDSA-SDNPVTCCQAVHALHARWIETAGGVVVADET---------------GNT  453 (484)
Q Consensus       391 ~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~-~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~---------------~~~  453 (484)
                      +|++++++++++|+|+ ||+||||+++. + .|||+|||++||++|++||+++|+++ .+++               .+.
T Consensus       385 ~~~~~~~~~~~~V~R~~~FsPvKn~~~~-~~~dsp~ta~~~l~~~~~~~l~~ag~~~-~~~~~~~~~~~~~~~~~~~~~~  462 (505)
T 1jv1_A          385 IFQFAKKFVVYEVLREDEFSPLKNADSQ-NGKDNPTTARHALMSLHHCWVLNAGGHF-IDENGSRLPAIPRLKDANDVPI  462 (505)
T ss_dssp             GGGGCSSEEEEEECHHHHCCBCCSCTTS-SSSSSHHHHHHHHHHHHHHHHHHTTCEE-BCTTCCBCCSSCCCCSTTCCCC
T ss_pred             HHhhcCceEEEEECcccceeeccCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCee-cccccccccccccccccccCCC
Confidence            9999999999999999 99999999987 5 79999999999999999999999999 3332               125


Q ss_pred             eEEEccceeeecCCccccccCcccCCCcccC
Q psy10030        454 VCEIAPRVSYEGEGLEERVKGKVLQTPLLLE  484 (484)
Q Consensus       454 ~ieisp~vsy~gE~l~~~~~~~~~~~p~~~~  484 (484)
                      .|||||++||+||||+++++||+|+.|++||
T Consensus       463 ~~Eisp~~sy~ge~l~~~~~~~~~~~~~~~~  493 (505)
T 1jv1_A          463 QCEISPLISYAGEGLESYVADKEFHAPLIID  493 (505)
T ss_dssp             CEEECTTTCSSSCSCHHHHTTCEECSSEEEE
T ss_pred             eEEECCccccCCCCchHHhcCCccCCCceec
Confidence            7999999999999999999999999999885

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=100.00  E-value=2.1e-82  Score=681.07  Aligned_cols=380  Identities=19%  Similarity=0.266  Sum_probs=329.0

Q ss_pred             cccccCCCCCCccccccHHHHhhhhhhccc----cccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEE
Q psy10030         39 QGTRLGADYPNRIESIKIQVYIGHGYQELS----GVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIV  114 (484)
Q Consensus        39 qg~~l~~~~pkg~~~i~~~~f~~~~~~~L~----ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvi  114 (484)
                      |-.+++.+||.|+..+     +.+..+.+.    ....+.++|+|..+..+..+.+++++.+|+++|+++|+  |+|||+
T Consensus        47 qL~~~d~~~~~gl~~~-----~~~a~~~l~~~~~~~~~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~--kvavvl  119 (630)
T 3ogz_A           47 DLYMFSNMYPGGVAQY-----IRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLC--KTVFVL  119 (630)
T ss_dssp             HHHHGGGTSTTHHHHH-----HHHHHHHHHHHTSCCCCSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGG--GEEEEE
T ss_pred             HHHhhChhhhhhHHHH-----HHHHHHHhhccccCCcccccccCCCCCccccccCCHHHHHHHHHHhHHHHh--hceEEE
Confidence            4457888899888742     222222111    11235688887766666666678899999999999998  999999


Q ss_pred             EcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCC
Q psy10030        115 LAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDP  194 (484)
Q Consensus       115 LaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~  194 (484)
                      ||||||||||+++||+++||++++++||||+++++|++       ++| +.|||+||||+.||++|++||++   ||+++
T Consensus       120 laGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~-------~~g-~~iPl~IMTS~~T~~~T~~~~~~---fgl~~  188 (630)
T 3ogz_A          120 VAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQR-------VGG-KEVPFVIMTSDDTHDRTLQLLRE---LQLEV  188 (630)
T ss_dssp             ECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHH-------HHC-TTCCEEEEECTTTHHHHHHHHHH---TTCCC
T ss_pred             ecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHH-------HhC-CCCcEEEEecccchHHHHHHHHH---hCCCc
Confidence            99999999999999999999999999999999999982       467 99999999999999999999999   99999


Q ss_pred             CcEEEEEcCCccccc-cCCcccccCCCcceeccCCCchHhHHHhhcC------------------hHHHHHHcCCeEEEE
Q psy10030        195 AHVIFFKQRSMPCFS-LSGEILLETRDRVARSPDGHGGLYHALGATG------------------ILDTMHTRGIKHIHV  255 (484)
Q Consensus       195 ~~v~~f~Q~~~P~~~-~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G------------------~l~~l~~~G~~~i~v  255 (484)
                      +||+||+|+++||++ .+|+++++++++++|+|+||||+|.+|+++|                  +|++|+++|++|+||
T Consensus       189 ~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v  268 (630)
T 3ogz_A          189 PNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVF  268 (630)
T ss_dssp             TTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEE
T ss_pred             ccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEE
Confidence            999999999999996 7799999999999999999999999999999                  999999999999999


Q ss_pred             EeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE---CCeE---EEEEeccCCcccccccccCCCc--
Q psy10030        256 YCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV---DGKH---KIVEYSELGNCSVFETQDQTGR--  327 (484)
Q Consensus       256 ~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~---~g~~---~vvEyse~~~e~~~~~~~~~g~--  327 (484)
                      +|+||+|++++||.||||+++++++|+++||+|+ |.|++|++|+.   +|++   +||||+|++++ +++.++++|+  
T Consensus       269 ~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~-~~~~~~~~g~~~  346 (630)
T 3ogz_A          269 IQDTNAGATITIPISLALSAEHSLDMNFTCIPRV-PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEV-SRALNKDGGDEV  346 (630)
T ss_dssp             ECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC-SSCSSCEEEEEESSTTSCCEEEEECHHHHHHH-HHHC--------
T ss_pred             EccCCccccccCHHHhHHHHhcCCCEEEEEEECC-CCcceeeEEEEecCCCceeeeeEEEeccCCHh-HhhccCCCcccc
Confidence            9999999999999999999999999999999986 99999999985   8999   56999999999 8887777776  


Q ss_pred             -----ccccccceeeeeecHHHHHH-HhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCC----c
Q psy10030        328 -----LKFNLGSICNHYFSLECLQR-MVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCE----N  397 (484)
Q Consensus       328 -----~~f~~~Ni~~~~~~l~~l~~-~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~----~  397 (484)
                           +.|.+||||||||+|+.+.+ +.+....||+++|+|   |.|.++..+    ++++||||||||++.+|+    +
T Consensus       347 ~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK---~~d~~~~~~----~~~~qLEt~m~d~~~~F~~~~~~  419 (630)
T 3ogz_A          347 SDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPK---YSDETRRSF----KKPARIESLMQDIALLFSEDDYR  419 (630)
T ss_dssp             ----CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCC---BSSSSSCCB----SSCBCEECCGGGGGGGCCTTTCC
T ss_pred             ccccccccccccceeeeEEHHHHHHHHHhccCccceecCCc---ccCCccccc----CcchhhhhHHHHHHHhccccCcc
Confidence                 67778899999999996554 444478899999999   667655443    567999999999776664    6


Q ss_pred             eEEEEEeccccccccCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHcCcEEE
Q psy10030        398 LVAWEVTRDEFSPLKNSP---------LDSASDNPVTCCQAVHALHARWIETAGGVVV  446 (484)
Q Consensus       398 ~~~~~V~R~~FsPvKn~~---------~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~  446 (484)
                      +++++|+|+||+||||+.         +. +.|||+||+.|+|+++++||+++|+++.
T Consensus       420 v~~~~V~R~~F~PVKn~~~~a~~k~~~g~-~~~sp~t~~~dly~~~~~~L~~aG~~v~  476 (630)
T 3ogz_A          420 VGGTVFERFSYQPVKNSLEEAAGLVAQGN-GAYCAATGEAAFYELQRRRLKAIGLPLF  476 (630)
T ss_dssp             EEEEECCGGGCCBCCBCHHHHHHHHHTTC-CCCBHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             eeEEEECCCeeecccCChhHhhhhhccCC-CcCChHHHHHHHHHHHHHHHHHcCceec
Confidence            799999999999999998         55 6899999999999999999999999984

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=100.00  E-value=1.8e-82  Score=667.71  Aligned_cols=349  Identities=18%  Similarity=0.227  Sum_probs=309.8

Q ss_pred             cccccHHHHhhhhhhcc-----ccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccc
Q psy10030         51 IESIKIQVYIGHGYQEL-----SGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGA  125 (484)
Q Consensus        51 ~~~i~~~~f~~~~~~~L-----~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~  125 (484)
                      +.+..+..| .++|.++     ..|+|++|+|+.  .+.++.++...      ..|+++|+  |+|||+||||||||||+
T Consensus        24 ~~~~~~~~f-~~~~~~~~~~~~~~i~~~~i~p~~--~~~~~~~l~~~------~~G~~~L~--kvavvlLaGGlGTRLG~   92 (484)
T 3gue_A           24 VEEKCIHIF-LIQHALVRKGETGYIPEKSISPVE--SLPFLQGIETK------GENTALLR--QAVVLKLNGGLGTGMGL   92 (484)
T ss_dssp             CCHHHHHHH-HHHHHHHHTTCCCCCCGGGCEECC--CCCBHHHHCCS------SCCHHHHT--TEEEEEEECCCCGGGTC
T ss_pred             CCHHHHHHH-HHHHHHHhcCCCCccCHhhCCChh--ccCChhhcCCc------hHHHHHHh--hcEEEEEcCCcccccCC
Confidence            788888877 4444332     138999999986  34444332221      16899998  99999999999999999


Q ss_pred             cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCc
Q psy10030        126 DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSM  205 (484)
Q Consensus       126 ~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~  205 (484)
                      ++|||++||+  +++||||++++||++++    ++|| +.|||+||||+.||++|++||++|+|||+++++|++|+|+++
T Consensus        93 ~~pKg~~~v~--sgksflql~~eqI~~l~----~~~~-~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~  165 (484)
T 3gue_A           93 NGPKSLLQVK--NGQTFLDFTALQLEHFR----QVRN-CNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRV  165 (484)
T ss_dssp             SSCGGGSEEE--TTEEHHHHHHHHHHHHH----HHHT-CCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCE
T ss_pred             CCCceeeecC--CCCcHHHHHHHHHHHHH----HHcC-CCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCce
Confidence            9999999996  99999999999999999    4577 999999999999999999999999999999999999999999


Q ss_pred             cccccCCc--ccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEE
Q psy10030        206 PCFSLSGE--ILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGV  283 (484)
Q Consensus       206 P~~~~~g~--~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~  283 (484)
                      ||++.+|+  ++++++++++|+|+||||+|.+|+++|+|++|+++|++|+||+|+|| |++++||.||||++++++++++
T Consensus       166 P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~~lG~~~~~~~d~~~  244 (484)
T 3gue_A          166 PKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLM  244 (484)
T ss_dssp             ECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHHHHHHHHHTTCSEEE
T ss_pred             eeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHHHHHHHHhcCCCEEE
Confidence            99999997  44677889999999999999999999999999999999999999999 6899999999999999999999


Q ss_pred             EEEEccCCCcccceEEEE----------CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc--
Q psy10030        284 KVVEKITPGESLGVLCNV----------DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE--  351 (484)
Q Consensus       284 ~vv~k~~~~e~~G~l~~~----------~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~--  351 (484)
                      |||+|+.++|++|++|++          +|+++++||+|+++++..++++.+|.+   ++|+||+|+++++|+++++.  
T Consensus       245 kvv~Kt~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~---~FNtnNi~~~l~~l~~~l~~~~  321 (484)
T 3gue_A          245 EVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHC---FFNTNNIWINLMELKKMMDEQL  321 (484)
T ss_dssp             EEEECCTTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSC---EEEEEEEEEEHHHHHHHHHHTT
T ss_pred             EEEECCCCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCce---EeEeeeEEEEHHHHHHHHHhcc
Confidence            999999999999999998          999999999999999555578887755   45899999999999888875  


Q ss_pred             -cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHH
Q psy10030        352 -DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAV  430 (484)
Q Consensus       352 -~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l  430 (484)
                       ...||+|+|+|+++.       .+|++||++|||+||||+|++++++.+++|+|+||+||||++      ++..+|+|+
T Consensus       322 g~~~Lp~~vn~K~id~-------~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvKn~s------dLl~~~Sdl  388 (484)
T 3gue_A          322 GVLRLPVMRNPKTVNP-------QDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKTCS------DLLALRSDA  388 (484)
T ss_dssp             TCCCCCCEEEEEESST-------TCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCSSHH------HHHHHHSTT
T ss_pred             CcCCCCcEeccceecC-------CCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccccch------HHHHHhhhc
Confidence             346899999998843       367899999999999999999999999999999999999994      788999998


Q ss_pred             HHHH
Q psy10030        431 HALH  434 (484)
Q Consensus       431 ~~~~  434 (484)
                      |.++
T Consensus       389 y~l~  392 (484)
T 3gue_A          389 YQVT  392 (484)
T ss_dssp             EEEC
T ss_pred             eecc
Confidence            8754

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=100.00  E-value=1.2e-80  Score=658.02  Aligned_cols=339  Identities=22%  Similarity=0.305  Sum_probs=296.7

Q ss_pred             hhhhhc-cccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCC
Q psy10030         61 GHGYQE-LSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG  139 (484)
Q Consensus        61 ~~~~~~-L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~  139 (484)
                      .+++.. -..++|++|+|+|++.+.++.++     ..|+..+...+..+|+|||+||||||||||+++||+++||  +++
T Consensus        83 ~r~l~~~~~~~~~~~i~p~p~~~~~~~~~l-----~~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V--~sg  155 (528)
T 3r3i_A           83 HRFLQEKGPSVDWGKIQRPPEDSIQPYEKI-----KARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGV--RNE  155 (528)
T ss_dssp             HHHHHC-------CCCCCCCTTTSEEHHHH-----TTSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEE--ETT
T ss_pred             HHHHhhccCCCCHHHCcCCCHHHccCHhhc-----CCccccchhhhhcCceEEEEeCCCCccccCCCCCccceec--CCC
Confidence            444432 23578999999999988877543     3344455566788999999999999999999999999998  799


Q ss_pred             CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccC-
Q psy10030        140 KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET-  218 (484)
Q Consensus       140 ~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~-  218 (484)
                      +||||++++||++++    ++|| +.|||+||||++||++|++||++|+|||   .+|++|+|+++||++.+|+++++. 
T Consensus       156 ktflql~~eqI~~l~----~~~g-~~IPl~IMTS~~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~dg~l~l~~~  227 (528)
T 3r3i_A          156 NTFLDLTVQQIEHLN----KTYN-TDVPLVLMNSFNTDEDTKKILQKYNHCR---VKIYTFNQSRYPRINKESLLPVAKD  227 (528)
T ss_dssp             EEHHHHHHHHHHHHH----HHHT-CCCCEEEEECTTTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEETTTCCCC---
T ss_pred             CcHHHHHHHHHHHHH----HHhC-CCCCEEEEeccchhHHHHHHHHhcCccC---CCeEEEEeCCeeeEecCCceecccc
Confidence            999999999999998    5678 9999999999999999999999999998   579999999999999999999986 


Q ss_pred             -----CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHc----CCceEEEEEEcc
Q psy10030        219 -----RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQ----GAHCGVKVVEKI  289 (484)
Q Consensus       219 -----~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~----~~~~~~~vv~k~  289 (484)
                           +++++|+|+||||+|.+|+++|+|++|.++|++|++|+|+||++++ +||.||||++.+    +++++++|++|+
T Consensus       228 ~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~-vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt  306 (528)
T 3r3i_A          228 VSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGAT-VDLYILNHLMNPPNGKRCEFVMEVTNKT  306 (528)
T ss_dssp             ----------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCC-CCHHHHHHHSSCSSSCCCSEEEEECCCC
T ss_pred             cccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccc-cCHHHHHHHHhcccccCCcEEEEEeEcc
Confidence                 7899999999999999999999999999999999999999999875 699999999998    999999999999


Q ss_pred             CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccC
Q psy10030        290 TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLD  368 (484)
Q Consensus       290 ~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d  368 (484)
                      .|+|++|++|+++|++++|||+|+++++..+   .+|.+.|++||||||||+++||+++++. ...||+|+|+|++|   
T Consensus       307 ~~dek~Gvl~~~dGk~~vvEyseip~e~~~~---~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd---  380 (528)
T 3r3i_A          307 RADVKGGTLTQYEGKLRLVEIAQVPKAHVDE---FKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLD---  380 (528)
T ss_dssp             TTCCSSCEEECSSSSCEEECTTSSCGGGTTT---SSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCS---
T ss_pred             ccCCcccEEEEECCeEEEEEecCCChhHhhc---cCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccC---
Confidence            9999999999999999999999999994433   3567899999999999999999999987 67899999999875   


Q ss_pred             CCCCeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHHHHH
Q psy10030        369 EQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHA  435 (484)
Q Consensus       369 ~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~~~~  435 (484)
                              .++|++|+|++|+|+|++++++.+++|+|+||+||||++      +....++|+|.+..
T Consensus       381 --------~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~s------dLll~~Sdly~l~~  433 (528)
T 3r3i_A          381 --------GGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTS------DLLLVMSNLYSLNA  433 (528)
T ss_dssp             --------SSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHH------HHHHHHSTTSEEET
T ss_pred             --------CCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchH------HHHHHhcceeEeeC
Confidence                    268899999999999999999999999999999999995      78888999888653

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=100.00  E-value=3.2e-77  Score=635.75  Aligned_cols=370  Identities=18%  Similarity=0.250  Sum_probs=325.1

Q ss_pred             cccccHHHHhh---hhhhc-cccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCcccccc
Q psy10030         51 IESIKIQVYIG---HGYQE-LSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGAD  126 (484)
Q Consensus        51 ~~~i~~~~f~~---~~~~~-L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~  126 (484)
                      +.+.+++.|..   ++... -..++|++|+|+  +.+.++.++..       ..|+++|+  |++||+||||+|||||++
T Consensus        24 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~i~p~--~~~~~~~~~~~-------~~g~~~l~--k~avViLAGGlGTRLg~~   92 (505)
T 2oeg_A           24 VNEACIRTFIAQHVMVSKGETGSIPDSAIMPV--DSLDALDSLTI-------ECDNAVLQ--STVVLKLNGGLGTGMGLC   92 (505)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCCCGGGCBCC--CCCCBGGGCCC-------CCCHHHHH--TEEEEEEECCCCGGGTCC
T ss_pred             CChHHHHHHHHHHHHHHhcCCCCcChhhcCCh--hhccChhhcch-------hHHHHHHh--cceEEEEcCCcccccCCC
Confidence            66777777632   22211 124788899998  55665554433       37999998  999999999999999999


Q ss_pred             CCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH-HcCCCCCCCCcEEEEEcCCc
Q psy10030        127 YPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE-RNGYFGLDPAHVIFFKQRSM  205 (484)
Q Consensus       127 ~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~-~~~~fgl~~~~v~~f~Q~~~  205 (484)
                      .||+|+||+  +++||||+++++|++++    .+|| +.|||+||||++||+.|++||+ +|++||+++++|++|+|+++
T Consensus        93 ~PK~llpV~--~gk~fLe~~ie~l~~~~----~~~g-~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~  165 (505)
T 2oeg_A           93 DAKTLLEVK--DGKTFLDFTALQVQYLR----QHCS-EHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQV  165 (505)
T ss_dssp             SCGGGSEEE--TTEEHHHHHHHHHHHHH----HHTC-TTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECCCE
T ss_pred             CCCcccccC--CCCcHHHHHHHHHHHHH----HhcC-CCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEcCE
Confidence            999999996  79999999999999988    5567 8999999999999999999999 99999999999999999999


Q ss_pred             cccccCC-ccc-ccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEE
Q psy10030        206 PCFSLSG-EIL-LETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGV  283 (484)
Q Consensus       206 P~~~~~g-~~~-l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~  283 (484)
                      ||++.+| +++ ++.+..++|+|+||||+|.+|+++|++++|.++|++|++|+|+||+ ++.+||.++|||.++++++++
T Consensus       166 P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL-~~~~D~~llg~~~~~~ad~~~  244 (505)
T 2oeg_A          166 PKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNL-GATIDKRVLAYMEKEKIDFLM  244 (505)
T ss_dssp             ECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCT-TCCCCHHHHHHHHHHTCSEEE
T ss_pred             EeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCcc-ccccCHHHHHHHHhcCCcEEE
Confidence            9999998 655 6777789999999999999999999999999999999999999996 788999999999999999999


Q ss_pred             EEEEccCCCcccceEEE-------ECCe-------EEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030        284 KVVEKITPGESLGVLCN-------VDGK-------HKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       284 ~vv~k~~~~e~~G~l~~-------~~g~-------~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                      +|++|+.+++++|++|.       .+|+       ++++||+|+++++..++   +|.+.|++||||||||+++||++++
T Consensus       245 ~v~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~---~g~~~f~~~Ninn~~~~l~~l~~~~  321 (505)
T 2oeg_A          245 EVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF---QDINKYSFFNTNNLWIRLPVLLETM  321 (505)
T ss_dssp             EEEECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH---HCTTTTCEEEEEEEEEEHHHHHHHH
T ss_pred             EEEEecCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc---cCccccCeeEEEEEEEEHHHHHHHH
Confidence            99999999999999999       7999       99999999999944333   4678999999999999999999988


Q ss_pred             hc---cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHH
Q psy10030        350 KE---DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTC  426 (484)
Q Consensus       350 ~~---~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta  426 (484)
                      +.   ...||+|+|+|++||.|       |+.||++|||+||||+|++++++++++|+|+||+||||+      +++.++
T Consensus       322 ~~~~~~~~Lp~~vn~K~i~~~d-------~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~FsPvKn~------~dl~~~  388 (505)
T 2oeg_A          322 QEHGGTLPLPVIRNEKTVDSSN-------SASPKVYQLETAMGAAIAMFESASAIVVPRSRFAPVKTC------ADLLAL  388 (505)
T ss_dssp             HHTTSSCCCCCEEEEEESSSSC-------TTSCEEEEEECCGGGGGGSCTTCEEEECCGGGCCCCSSH------HHHHHH
T ss_pred             hhhcCccCCcceecccccCCCC-------CCCCCeEEEeEHHHHHHHhcCcceEEEeccceeecccCC------CCHHHH
Confidence            65   24689999999999875       678999999999999999999999999999999999997      599999


Q ss_pred             HHHHHHHHH--HHHHHcCcEEEcCCCCCeeEEEccc
Q psy10030        427 CQAVHALHA--RWIETAGGVVVADETGNTVCEIAPR  460 (484)
Q Consensus       427 ~~~l~~~~~--~~l~~~g~~~~~~~~~~~~ieisp~  460 (484)
                      |++||.+++  +|++ +|+++.   . ...||++|.
T Consensus       389 ~sdly~~~~~~~~~~-~~~~~~---~-~p~i~l~p~  419 (505)
T 2oeg_A          389 RSDAYVVTDDFRLVL-DDRCHG---H-PPVVDLDSA  419 (505)
T ss_dssp             HSTTEEECTTCCEEE-CGGGTT---C-CCEEEECHH
T ss_pred             HHHHHhhcCCceEEE-cccccC---c-CCeEEEChh
Confidence            999999998  7876 676541   1 235999998

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-72  Score=599.49  Aligned_cols=366  Identities=20%  Similarity=0.300  Sum_probs=312.2

Q ss_pred             cccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHH
Q psy10030         69 GVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAE  148 (484)
Q Consensus        69 ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~  148 (484)
                      .++|++++|+|+..+.++.+++     .++ .|+  ++++|++||+||||+|||||++.||+|+||  ++|+||||++++
T Consensus        60 ~~~~~~i~p~~~~~~~~~~~~~-----~~~-~~~--~~~~k~avViLAGG~GTRmgs~~PK~l~~V--~~gk~~Le~~i~  129 (488)
T 2i5k_A           60 TLEWDKIKSPNPDEVVKYEIIS-----QQP-ENV--SNLSKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVR  129 (488)
T ss_dssp             SCCGGGEECCCTTTEEEHHHHH-----SSC-CCS--TTGGGEEEEEECCCBSGGGTCCSBSTTSCC--BTTBCHHHHHHH
T ss_pred             CCcccccccCChhcccChhhcc-----cch-hhh--hhcCCceEEEEcCCCcccCCCCCCcccccc--CCCCcHHHHHHH
Confidence            4788999999887777654321     111 244  446799999999999999999999999999  669999999999


Q ss_pred             HHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCC---cceec
Q psy10030        149 KIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRD---RVARS  225 (484)
Q Consensus       149 ~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~---~i~~~  225 (484)
                      ++++++    ..+| +.|||+||||++|++.|++||+++++||+   +|++|.|+++||++.+|+++++.+.   .++|+
T Consensus       130 ~i~~l~----~~~G-~~Ip~vImts~~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~  201 (488)
T 2i5k_A          130 QIEYLN----RQYD-SDVPLLLMNSFNTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWY  201 (488)
T ss_dssp             HHHHHH----HHHT-CCCEEEEECCTTTHHHHHHHHGGGCSSSC---EEEEECCCCEECEETTTCCBSCSSSSSCTTSEE
T ss_pred             HHHHhH----HhcC-CCccEEEEECCCCHHHHHHHHHhccccCc---eEEEEEeCccceEccccceeeccCCCCCceeee
Confidence            999886    5567 88999999999999999999999999996   5999999999999999999998664   68999


Q ss_pred             cCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeE
Q psy10030        226 PDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKH  305 (484)
Q Consensus       226 P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~  305 (484)
                      |+||||+|.+|..+|++++|.++|++|++|+|+|| |++..||.+||+|..++++++++++++++|++++|+||+.+|+.
T Consensus       202 P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~dG~~  280 (488)
T 2i5k_A          202 PPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQV  280 (488)
T ss_dssp             CCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEETTEE
T ss_pred             cCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEECCcE
Confidence            99999999999999999999999999999999999 78899999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchh
Q psy10030        306 KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKL  384 (484)
Q Consensus       306 ~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~kl  384 (484)
                      ++|||+|+++++..++.   +...|+.+|||+|||++++|+++++. ...||+|+|+|++|| |++       .++++||
T Consensus       281 ~iVE~~e~~~e~~~~~~---~~~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~~~-------~~~~~ql  349 (488)
T 2i5k_A          281 RLLEVAQVPKEHIDEFK---NIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-DGH-------EINVLQL  349 (488)
T ss_dssp             EEECGGGSCTTSHHHHT---CTTTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-------------CEECC
T ss_pred             EEEEeccCCHHHHhhcc---cccccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccC-CCC-------CCceEEe
Confidence            99999999998443332   34678899999999999999999876 678999999999998 643       3567999


Q ss_pred             hhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccceeee
Q psy10030        385 EKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYE  464 (484)
Q Consensus       385 E~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~vsy~  464 (484)
                      |+||||+|++++++.+++|+|+||+||||++      ++.++++++|.      ..+|..+. +..   .|||+|+|||+
T Consensus       350 E~~~~d~~~~~~~~~~~~V~R~~F~PvKn~~------~ll~~~~~~~~------~~~g~~~~-~~~---~~e~~P~v~~~  413 (488)
T 2i5k_A          350 ETACGAAIRHFDGAHGVVVPRSRFLPVKTCS------DLLLVKSDLFR------LEHGSLKL-DPS---RFGPNPLIKLG  413 (488)
T ss_dssp             BCCGGGGGGGSSSCEEEEECGGGCCBCCSHH------HHHHHTSTTEE------EETTEEEE-CTT---CCSSCCEEEEC
T ss_pred             eehhhhHHhhccCceEEEecccccccccCCc------cHHHHHHHHHH------HhcCcEee-cCC---cCCCCCeEEEC
Confidence            9999999999999999999999999999983      56666665554      44676652 321   28999999999


Q ss_pred             cCCccccccCcc----cCC-CcccC
Q psy10030        465 GEGLEERVKGKV----LQT-PLLLE  484 (484)
Q Consensus       465 gE~l~~~~~~~~----~~~-p~~~~  484 (484)
                      |+ +.   ++++    |.+ |.+++
T Consensus       414 ~~-~~---~~~~~~~rf~~~p~i~~  434 (488)
T 2i5k_A          414 SH-FK---KVSGFNARIPHIPKIVE  434 (488)
T ss_dssp             GG-GS---SHHHHHHHCSSCCBCTT
T ss_pred             Cc-cc---chhhHHhhcCCCccccc
Confidence            95 33   4554    766 77764

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.66  E-value=8.8e-16  Score=164.17  Aligned_cols=253  Identities=19%  Similarity=0.186  Sum_probs=173.3

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH-
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER-  186 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~-  186 (484)
                      +.++|||||||+||||+...||.|+||   .|||++++.++.+.+        .|   +--+++...+..+.++++|++ 
T Consensus        11 ~~~~vvILAaG~GtRm~~~~pK~l~pv---~gkp~i~~~l~~~~~--------~g---~~~i~vv~~~~~~~i~~~~~~~   76 (501)
T 3st8_A           11 GDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAK--------LA---PQRLIVVLGHDHQRIAPLVGEL   76 (501)
T ss_dssp             -CEEEEEEECSCCGGGCCSSCGGGCEE---TTEEHHHHHHHHHHH--------HC---CSEEEEEECTTHHHHHHHHHHH
T ss_pred             CCceEEEECCcCcccCCCCCCHHHeEE---CChhHHHHHHHHHHh--------CC---CCEEEEEeCCCHHHHHHHHHHH
Confidence            579999999999999999999999999   999999999998864        34   555555567889999999986 


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG  266 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~  266 (484)
                      .+.+|.+   |.+..|..                     |.|+|++.......     +.+.-...++|.++|.+|....
T Consensus        77 ~~~~~~~---i~~~~q~~---------------------~lGTa~Av~~a~~~-----l~~~~~~~~lvl~gd~~l~~~~  127 (501)
T 3st8_A           77 ADTLGRT---IDVALQDR---------------------PLGTGHAVLCGLSA-----LPDDYAGNVVVTSGDTPLLDAD  127 (501)
T ss_dssp             HHHHTSC---CEEEECSS---------------------CCCHHHHHHHHHTT-----SCTTCCSEEEEEETTCTTCCHH
T ss_pred             HHhcCCc---EEEEEcCC---------------------CCCcHHHHHHHHHH-----hccccccceeeecCcceeecHH
Confidence            3345643   66666654                     78999987754322     2222356889999999874322


Q ss_pred             C-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCe-EEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        267 D-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGK-HKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       267 D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~-~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      + -.++.+|...++++++.+++..+|. .+|++... +|+ ..++|..+.+++ .         ..-+..|+..++|+-+
T Consensus       128 ~~~~l~~~h~~~~~~~ti~~~~~~dp~-~yG~i~~~~~g~v~~ivEk~~~~~~-~---------~~i~~in~Giy~f~~~  196 (501)
T 3st8_A          128 TLADLIATHRAVSAAVTVLTTTLDDPF-GYGRILRTQDHEVMAIVEQTDATPS-Q---------REIREVNAGVYAFDIA  196 (501)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEECSCCT-TSCEEEECTTCCEEEEECGGGCCHH-H---------HHCCEEEEEEEEEEHH
T ss_pred             HHHHHHHHHhhccccceEeeeccCCch-hccccccccceeEEeeccccCCChh-h---------ccceeeeceeeeecch
Confidence            1 1356788889999999999888775 67888764 565 468888777665 2         2334678999999999


Q ss_pred             HHHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccC----CceEEEEEecc-ccccccCCCCCC
Q psy10030        344 CLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLC----ENLVAWEVTRD-EFSPLKNSPLDS  418 (484)
Q Consensus       344 ~l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~----~~~~~~~V~R~-~FsPvKn~~~~~  418 (484)
                      .|+++...   +...                      -.+-|.++.|++..+    ..+..+..+.+ +...+.+.    
T Consensus       197 ~l~~~l~~---l~~~----------------------n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~----  247 (501)
T 3st8_A          197 ALRSALSR---LSSN----------------------NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNR----  247 (501)
T ss_dssp             HHHHHHTT---CCCC----------------------STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSH----
T ss_pred             hHHHhhhh---hccc----------------------ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccH----
Confidence            99887632   2111                      124555666665443    23444444444 33333222    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCcEE
Q psy10030        419 ASDNPVTCCQAVHALHARWIETAGGVV  445 (484)
Q Consensus       419 ~~ds~~ta~~~l~~~~~~~l~~~g~~~  445 (484)
                        .....++..+..+..+.++..|+.+
T Consensus       248 --~~l~~~~~~~~~r~~~~~~~~gv~~  272 (501)
T 3st8_A          248 --VQLAELASELNRRVVAAHQLAGVTV  272 (501)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             --HHHHHHHHHhhhhhhhhhcccCcee
Confidence              2445555666666666677789887

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.25  E-value=1e-10  Score=114.86  Aligned_cols=181  Identities=17%  Similarity=0.176  Sum_probs=123.4

Q ss_pred             CCCEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCC-chHHHH
Q psy10030        107 RGDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELT-DRPTRE  182 (484)
Q Consensus       107 ~gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t-~e~t~~  182 (484)
                      ..++.+||||||.||||+.   +.||.++|+   .|+|++++.++.+..        .|   +.-+++...+. .+.+.+
T Consensus        22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i---~g~pli~~~l~~l~~--------~g---~~~iivv~~~~~~~~~~~   87 (269)
T 4ecm_A           22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPV---GRYPMIYHAVYKLKQ--------CD---ITDIMIITGKEHMGDVVS   87 (269)
T ss_dssp             --CEEEEEECCSCCGGGTTTTSSSCGGGSEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHH
T ss_pred             ccCcEEEEECCCCccccccccCCCCceecEE---CCEEHHHHHHHHHHH--------CC---CCEEEEECChhhHHHHHH
Confidence            3468999999999999987   889999999   799999999998864        23   55555555543 477888


Q ss_pred             HHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030        183 YFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL  262 (484)
Q Consensus       183 ~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l  262 (484)
                      ++++...+|++   +.+..|                     ..+.|+|+.+....     +.+   +.++++|+++|+++
T Consensus        88 ~~~~~~~~~~~---i~~~~~---------------------~~~~G~~~al~~a~-----~~~---~~~~~lv~~~D~~~  135 (269)
T 4ecm_A           88 FLGSGQEFGVS---FTYRVQ---------------------DKAGGIAQALGLCE-----DFV---GNDRMVVILGDNIF  135 (269)
T ss_dssp             HHTTSGGGTCE---EEEEEC---------------------SSCCCHHHHHHTTH-----HHH---TTSEEEEEETTEEE
T ss_pred             HHhhccccCce---EEEeeC---------------------CccCcHHHHHHHHH-----Hhc---CCCcEEEEeCCccC
Confidence            88765456643   332222                     22567777665432     222   25899999999986


Q ss_pred             cccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        263 VKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      . ..--.++..+.++++++++-+.+..+| .+.|++...+|+  ++++.+-+..           ......|++.++|+-
T Consensus       136 ~-~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~g~--v~~~~ekp~~-----------~~~~~~~~Giy~~~~  200 (269)
T 4ecm_A          136 S-DDIRPYVEEFTNQKEGAKVLLQSVDDP-ERFGVANIQNRK--IIEIEEKPKE-----------PKSSYAVTGIYLYDS  200 (269)
T ss_dssp             S-SCSHHHHHHHHTSSSSEEEEEEECSCG-GGSEEEEEETTE--EEEEEESCSS-----------CSCSEEEEEEEEECT
T ss_pred             c-cCHHHHHHHHHhcCCCeEEEEEECCCC-CCceEEEEcCCE--EEEEEECCCC-----------CCCcEEEEEEEEECH
Confidence            4 444557788888889988888877654 567888877765  3344333321           012367889999998


Q ss_pred             HHHHHH
Q psy10030        343 ECLQRM  348 (484)
Q Consensus       343 ~~l~~~  348 (484)
                      ++++.+
T Consensus       201 ~~l~~l  206 (269)
T 4ecm_A          201 KVFSYI  206 (269)
T ss_dssp             THHHHH
T ss_pred             HHHHhh
Confidence            776544

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.19  E-value=1.2e-10  Score=113.52  Aligned_cols=188  Identities=16%  Similarity=0.089  Sum_probs=119.4

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      |+.+||||||.||||+   ||.+.||   .|+|++++.++++..        .|   +.-+++..+  ++.+.+++++  
T Consensus         2 ~~~aiIlA~G~stRlp---~K~L~~i---~GkPli~~~l~~l~~--------~~---~~~ivVv~~--~~~i~~~~~~--   60 (252)
T 3oam_A            2 SFTVVIPARYQSTRLP---GKPLADI---GGKPMIQWVYEQAMQ--------AG---ADRVIIATD--DERVEQAVQA--   60 (252)
T ss_dssp             CEEEEEECCCCCSSST---TGGGCEE---TTEEHHHHHHHHHHH--------TT---CSEEEEEES--CHHHHHHHHH--
T ss_pred             ceEEEEecCcCCCCCC---CcceeeE---CCEEHHHHHHHHHHh--------CC---CCeEEEECC--HHHHHHHHHH--
Confidence            5789999999999995   7999999   899999999998864        23   333344433  6889999986  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       ||.+   +.+..|                     ..|.|+|+++.++..      +...+.++++++++|+++....+-
T Consensus        61 -~g~~---v~~~~~---------------------~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli~~~~i  109 (252)
T 3oam_A           61 -FGGV---VCMTSP---------------------NHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLIPPAII  109 (252)
T ss_dssp             -TTCE---EEECCT---------------------TCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTCCHHHH
T ss_pred             -cCCE---EEEcCC---------------------CCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeecCHHHH
Confidence             5532   321111                     236889987765532      211256899999999987422221


Q ss_pred             -HHHHHHHHcCCceEEEEEEccCCCcc----cceEEEE-CCeEEEEEeccCCcccccccccCC-C-cccccccceeeeee
Q psy10030        269 -TFLGYCVEQGAHCGVKVVEKITPGES----LGVLCNV-DGKHKIVEYSELGNCSVFETQDQT-G-RLKFNLGSICNHYF  340 (484)
Q Consensus       269 -~~lg~~~~~~~~~~~~vv~k~~~~e~----~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~-g-~~~f~~~Ni~~~~~  340 (484)
                       .++..+.++++++++-+++..+|.+.    +|.++.. +|+  ++.+++-+-.+.++..... . ...-+..|++.+.|
T Consensus       110 ~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~--v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~  187 (252)
T 3oam_A          110 RQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGY--ALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAY  187 (252)
T ss_dssp             HHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSB--EEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCe--EEEEeCCCCCCCCCccccccccccccceEEEEEEEc
Confidence             24555666788898888887655432    2666553 564  4556653211011100000 0 01124679999999


Q ss_pred             cHHHHHHHhh
Q psy10030        341 SLECLQRMVK  350 (484)
Q Consensus       341 ~l~~l~~~~~  350 (484)
                      +-++|++..+
T Consensus       188 ~~~~l~~~~~  197 (252)
T 3oam_A          188 RAGFINTYLD  197 (252)
T ss_dssp             ETTHHHHHHH
T ss_pred             CHHHHHHHHc
Confidence            9999988764

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.12  E-value=4.7e-10  Score=110.45  Aligned_cols=197  Identities=17%  Similarity=0.143  Sum_probs=115.5

Q ss_pred             EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+||||||.||||+.   ..||.++||   .|+|++++.++.+..        .|   +.-+++...+..+.+.++|.+
T Consensus         3 ~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~--------~g---i~~i~vv~~~~~~~i~~~~~~   68 (281)
T 3juk_A            3 KKCLFPAAGYGTRFLPITKTIPKEMLPI---VDKPLIQYAVEEAME--------AG---CEVMAIVTGRNKRSLEDYFDT   68 (281)
T ss_dssp             CEEEEECCSCCGGGTTGGGTSCGGGCBS---SSSBHHHHHHHHHHH--------HT---CCEEEEEECTTHHHHHHHTSC
T ss_pred             eEEEEECCcCCcccCccccCCCcccceE---CCEEHHHHHHHHHHh--------CC---CCEEEEEecCCHHHHHHHHhc
Confidence            5689999999999987   899999999   799999999998864        24   556666667778899988865


Q ss_pred             cCCCCCCCCcEEEEEcCCc---cccc---cCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCC
Q psy10030        187 NGYFGLDPAHVIFFKQRSM---PCFS---LSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDN  260 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~---P~~~---~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN  260 (484)
                      ...+  +. .+  -..+..   ..+.   ...++.    ......|.|+|+.+....     +.+   +-++++|.++|+
T Consensus        69 ~~~l--~~-~l--~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~Gt~~al~~a~-----~~l---~~~~~lv~~~D~  131 (281)
T 3juk_A           69 SYEI--EH-QI--QGTNKENALKSIRNIIEKCCFS----YVRQKQMKGLGHAILTGE-----ALI---GNEPFAVILADD  131 (281)
T ss_dssp             CC-------------CCHHHHHHHHHHHHHHCEEE----EEECSSCCCHHHHHHHTH-----HHH---CSSCEEEECTTE
T ss_pred             chhh--hh-hh--hcccchhhhhhhhccccCccEE----EEecCCCCCcHHHHHHHH-----HHc---CCCCEEEEeCCe
Confidence            4221  10 00  000000   0000   000000    111223678888766432     222   347899999999


Q ss_pred             CccccC-----CHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE---CCeEEEEEeccCCcccccccccCCCccccc
Q psy10030        261 ILVKVG-----DPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV---DGKHKIVEYSELGNCSVFETQDQTGRLKFN  331 (484)
Q Consensus       261 ~l~~~~-----Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~---~g~~~vvEyse~~~e~~~~~~~~~g~~~f~  331 (484)
                      ++ ...     --.++.++.+.++ .++.+.... .+..+.|++...   +|-.+|.++.|-+....         ..-+
T Consensus       132 ~~-~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~---------~~~~  200 (281)
T 3juk_A          132 LC-ISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQED---------APSN  200 (281)
T ss_dssp             EE-ECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTT---------CSCS
T ss_pred             ec-cCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCC---------CCcc
Confidence            54 332     2336667766666 333333221 234577888765   66445555555443200         0123


Q ss_pred             ccceeeeeecHHHHHHH
Q psy10030        332 LGSICNHYFSLECLQRM  348 (484)
Q Consensus       332 ~~Ni~~~~~~l~~l~~~  348 (484)
                      ..|++.++|+-+.++.+
T Consensus       201 ~~~~GiYi~~~~~l~~l  217 (281)
T 3juk_A          201 LAVIGRYILTPDIFEIL  217 (281)
T ss_dssp             EEEEEEEEECTTHHHHH
T ss_pred             eeEEEEEEECHHHHHHH
Confidence            56889999998776544

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.07  E-value=1.1e-09  Score=109.07  Aligned_cols=181  Identities=20%  Similarity=0.232  Sum_probs=117.5

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l  184 (484)
                      ++.+||||||.||||+   .+.||.++||   .|+|++++.++.+..        .|   +.- +|.|+.+..+.+.+++
T Consensus         2 ~~~aIILAgG~gtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~--------~g---i~~I~vv~~~~~~~~i~~~l   67 (293)
T 1fxo_A            2 KRKGIILAGGSGTRLHPATLAISKQLLPV---YDKPMIYYPLSTLML--------AG---IREILIISTPQDTPRFQQLL   67 (293)
T ss_dssp             CEEEEEECCCCCTTTTTHHHHSCGGGSEE---TTEETTHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHHHH
T ss_pred             CceEEEECCCCCCcCccccCCCCceeCeE---CCEeHHHHHHHHHHH--------CC---CCEEEEEeccccHHHHHHHH
Confidence            4678999999999998   3689999999   899999999888853        23   444 4456677778888888


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .+...+|++   +.+..|+                     .|.|+++.+....+     .+   +-+.++++++||++..
T Consensus        68 ~~g~~~g~~---i~~~~~~---------------------~~~G~~~al~~a~~-----~i---~~~~~~lv~gD~~~~~  115 (293)
T 1fxo_A           68 GDGSNWGLD---LQYAVQP---------------------SPDGLAQAFLIGES-----FI---GNDLSALVLGDNLYYG  115 (293)
T ss_dssp             TTSGGGTCE---EEEEECS---------------------SCCCGGGHHHHTHH-----HH---TTSEEEEEETTEEEEC
T ss_pred             hcccccCce---EEEeeCC---------------------CCCCHHHHHHHHHH-----Hh---CCCCEEEEECChhccC
Confidence            765445643   3322222                     37788887764322     22   2356677779999754


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ..-..++..+.+++.+.++-+++..+| ++.|++... +|+.  +.+.+-|.. -          .-++.|++.++|+-+
T Consensus       116 ~~l~~~l~~~~~~~~~~~v~~~~v~dp-~~~g~v~~d~~g~v--~~~~ekp~~-~----------~s~~~~~Giy~~~~~  181 (293)
T 1fxo_A          116 HDFHELLGSASQRQTGASVFAYHVLDP-ERYGVVEFDQGGKA--ISLEEKPLE-P----------KSNYAVTGLYFYDQQ  181 (293)
T ss_dssp             TTHHHHHHHHHTCCSSEEEEEEECSCG-GGSEEEEECTTSCE--EEEEESCSS-C----------SSSEEEEEEEEECTT
T ss_pred             ccHHHHHHHHHhcCCCcEEEEEECCCc-ccCcEEEECCCCcE--EEEEECCCC-C----------CCCeEEEEEEEEcHH
Confidence            222335666655666777767766655 578887654 4543  333332221 0          113678888999987


Q ss_pred             HHHHHh
Q psy10030        344 CLQRMV  349 (484)
Q Consensus       344 ~l~~~~  349 (484)
                      .++.+.
T Consensus       182 ~l~~~~  187 (293)
T 1fxo_A          182 VVDIAR  187 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.06  E-value=1.7e-09  Score=108.03  Aligned_cols=179  Identities=20%  Similarity=0.208  Sum_probs=116.9

Q ss_pred             EEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFE  185 (484)
Q Consensus       110 vavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~  185 (484)
                      +.+||||||.||||+   .+.||.++||   .|+|++++.++.+..        .|   +. ++|.|+.+..+.+.+++.
T Consensus         4 m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~--------~g---i~~I~vv~~~~~~~~i~~~l~   69 (296)
T 1mc3_A            4 MKGIILAGGSGTRLHPITRGVSKQLLPI---YDKPMIYYPLSVLML--------AG---IREILIITTPEDKGYFQRLLG   69 (296)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEE---TTEETTHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHHHHT
T ss_pred             cEEEEECCCCCCcCCcccCCCCceeeEE---CCeeHHHHHHHHHHh--------CC---CCcEEEEechhHHHHHHHHHh
Confidence            568999999999998   4789999999   899999999888753        23   44 444566677788888887


Q ss_pred             HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      +...+|++   +.+..|.                     .|.|+++.+.....     .+   +-+.++++++||++...
T Consensus        70 ~g~~~g~~---i~~~~~~---------------------~~~G~~~al~~a~~-----~i---~~~~~~lv~gD~~~~~~  117 (296)
T 1mc3_A           70 DGSEFGIQ---LEYAEQP---------------------SPDGLAQAFIIGET-----FL---NGEPSCLVLGDNIFFGQ  117 (296)
T ss_dssp             TSGGGTCE---EEEEECS---------------------SCCCSTHHHHHTHH-----HH---TTSCEEEEETTEEEECS
T ss_pred             cccccCce---EEEeccC---------------------CCCCHHHHHHHHHH-----Hh---CCCCEEEEECCcccccc
Confidence            65445643   3332332                     36788877654321     22   22445556699997543


Q ss_pred             CCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030        266 GDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC  344 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~  344 (484)
                      .-..++..+.+.+.+.++-+++..+| +++|++... +|  .++.+.+-|.. -          .-++.|++.++|+-++
T Consensus       118 ~l~~~l~~~~~~~~~~~v~~~~v~dp-~~yg~v~~d~~g--~v~~~~ekp~~-~----------~s~~~~~Giy~~~~~~  183 (296)
T 1mc3_A          118 GFSPKLRHVAARTEGATVFGYQVMDP-ERFGVVEFDDNF--RAISLEEKPKQ-P----------KSNWAVTGLYFYDSKV  183 (296)
T ss_dssp             SCHHHHHHHTTCCSSEEEEEEECSCC-SSSBBCEEETTE--EEEECCBSCSS-C----------SCSEEEEEEEECCTHH
T ss_pred             CHHHHHHHHHHcCCCCEEEEEECCCc-ccCCEEEECCCC--cEEEEEECCCC-C----------CCCEEEEEEEEEcHHH
Confidence            34456666655566677666776666 478887654 33  34555443321 0          1136788899999887


Q ss_pred             HHHH
Q psy10030        345 LQRM  348 (484)
Q Consensus       345 l~~~  348 (484)
                      ++.+
T Consensus       184 l~~~  187 (296)
T 1mc3_A          184 VEYA  187 (296)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.04  E-value=2.6e-09  Score=106.82  Aligned_cols=208  Identities=14%  Similarity=0.087  Sum_probs=125.3

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCC-chHHHHHHHHc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELT-DRPTREYFERN  187 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t-~e~t~~~l~~~  187 (484)
                      ++.+||||||+||||+.  ||.++|++ +.|+|++++.++.+..        .|   +.-+++...+. .+.+.++|.+.
T Consensus         5 ~~~~vIlAaG~g~R~~~--~K~l~~ig-~~g~pli~~~l~~~~~--------~~---~~~i~vv~~~~~~~~~~~~~~~~   70 (303)
T 3pnn_A            5 KPTLFVLAAGMGSRYGS--LKQLDGIG-PGGDTIMDYSVYDAIR--------AG---FGRLVFVIRHSFEKEFREKILTK   70 (303)
T ss_dssp             CCEEEEECTTCBCTTSS--BCCCCCCS-TTSCCHHHHHHHHHHH--------HT---CCEEEEEECGGGHHHHHHHTHHH
T ss_pred             ceEEEEECCCCcccCCC--CceEeEcC-CCCeeHHHHHHHHHHH--------CC---CCeEEEEcCchHHHHHHHHHHHH
Confidence            46889999999999986  89999983 2589999999988754        23   54454445555 58899999875


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC-
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG-  266 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~-  266 (484)
                      ..++.   ++.+..|+..- +.....+...     ...|.|+|+.+......     +    -+.++|+++|++. ... 
T Consensus        71 ~~~~~---~i~~~~~~~~~-~~~~~~~~~~-----~~~~~Gt~~al~~a~~~-----i----~~~~lV~~gD~l~-~~~~  131 (303)
T 3pnn_A           71 YEGRI---PVELVFQELDR-LPEGFSCPEG-----REKPWGTNHAVLMGRDA-----I----REPFAVINADDFY-GRNG  131 (303)
T ss_dssp             HTTTS---CEEEEECCTTC-CCTTCCCCTT-----CCSCCCHHHHHHTTTTT-----C----CSCEEEEESSCBC-CHHH
T ss_pred             hccCC---cEEEEeccccc-cccccccccc-----ccccCCcHHHHHHHHHh-----c----CCCEEEEECCeec-CHHH
Confidence            43443   47777776321 1111111111     12478999887765432     1    2567899999964 211 


Q ss_pred             CHHHHHHHHH---cCCceEEEEEEccCCCccc-----ceEEEE-CCeE-EEEEeccCCccc-ccccccCCCc----cccc
Q psy10030        267 DPTFLGYCVE---QGAHCGVKVVEKITPGESL-----GVLCNV-DGKH-KIVEYSELGNCS-VFETQDQTGR----LKFN  331 (484)
Q Consensus       267 Dp~~lg~~~~---~~~~~~~~vv~k~~~~e~~-----G~l~~~-~g~~-~vvEyse~~~e~-~~~~~~~~g~----~~f~  331 (484)
                      --.++.++.+   .++++++-+.+..+|-...     |++... +|+. .++|-.+.+.+. .....+.+|.    ..-+
T Consensus       132 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~  211 (303)
T 3pnn_A          132 FEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDA  211 (303)
T ss_dssp             HHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTC
T ss_pred             HHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccccCCCCC
Confidence            1226677664   5688888888777662334     455444 5653 355554432110 0001111221    0124


Q ss_pred             ccceeeeeecHHHHHHHh
Q psy10030        332 LGSICNHYFSLECLQRMV  349 (484)
Q Consensus       332 ~~Ni~~~~~~l~~l~~~~  349 (484)
                      ..|++.++|+-++++.+.
T Consensus       212 ~i~~GiY~f~~~~~~~l~  229 (303)
T 3pnn_A          212 PVSMNMWGFTPDYFDYSE  229 (303)
T ss_dssp             EEEEEEEEECTHHHHHHH
T ss_pred             EEEEEEEEECHHHHHHHH
Confidence            678899999988776654

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.03  E-value=3e-09  Score=106.27  Aligned_cols=180  Identities=18%  Similarity=0.174  Sum_probs=114.2

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l  184 (484)
                      .+.+||||||.||||+   .+.||.++||   .|+|++++.++.+..        .|   +. ++|.|+.+..+.+.+++
T Consensus         3 ~m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~--------~g---i~~Iivv~~~~~~~~i~~~l   68 (295)
T 1lvw_A            3 HMKGIVLAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSVLML--------AG---IRDILIISTPRDLPLYRDLL   68 (295)
T ss_dssp             SCEEEEECCCCCSTTTTTTTSSCGGGSEE---TTEETTHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHHHH
T ss_pred             ceEEEEECCCCCCccccccCCCCceecEE---CCeeHHHHHHHHHHH--------CC---CCeEEEEeccchHHHHHHHh
Confidence            3678999999999998   4789999999   899999999888853        23   44 34456667778888888


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .+...+|++   +.+..|.                     .|.|+++.+.....     .+   +-+.+.++++||++..
T Consensus        69 ~~g~~~g~~---i~~~~~~---------------------~~~G~~~al~~a~~-----~i---~~~~~~lv~gD~~~~~  116 (295)
T 1lvw_A           69 GDGSQFGVR---FSYRVQE---------------------EPRGIADAFIVGKD-----FI---GDSKVALVLGDNVFYG  116 (295)
T ss_dssp             TTSGGGTSE---EEEEECS---------------------SCCCGGGHHHHTHH-----HH---TTSCEEEEETTCCEEC
T ss_pred             hhccccCce---EEEeeCC---------------------CCCChHHHHHHHHH-----Hh---CCCcEEEEECCccccC
Confidence            764445643   3322222                     26788887664322     22   2234555569999754


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ..-..++..+.+.+.+.++-+++..+|. +.|++... +|+.  +.+.+-|.. -          .-++.|++.++|+-+
T Consensus       117 ~~l~~~l~~~~~~~~~~~v~~~~v~dp~-~~g~v~~d~~g~v--~~~~ekp~~-~----------~s~~~~~Giy~f~~~  182 (295)
T 1lvw_A          117 HRFSEILRRAASLEDGAVIFGYYVRDPR-PFGVVEFDSEGRV--ISIEEKPSR-P----------KSNYVVPGLYFYDNQ  182 (295)
T ss_dssp             TTHHHHHHHHHTCCSSEEEEEEECSCCT-TSEEEEECTTSBE--EEEEESCSS-C----------SCSEECCSEEEECTT
T ss_pred             cCHHHHHHHHHHcCCCcEEEEEECCCcc-cCCEEEECCCCcE--EEEEECCCC-C----------CCCEEEEEeEEEcHH
Confidence            2223356666555666766677766664 68877644 4543  333332211 0          113567888899987


Q ss_pred             HHHHH
Q psy10030        344 CLQRM  348 (484)
Q Consensus       344 ~l~~~  348 (484)
                      .++.+
T Consensus       183 ~l~~~  187 (295)
T 1lvw_A          183 VVEIA  187 (295)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.02  E-value=2.3e-08  Score=104.69  Aligned_cols=177  Identities=19%  Similarity=0.213  Sum_probs=113.3

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.||||+.+.||.++|+   .|+|++++.++.++..        |   +.-+++...+.++.+.+++++. 
T Consensus         8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i---~g~pli~~~l~~l~~~--------~---~~~i~vv~~~~~~~i~~~~~~~-   72 (459)
T 4fce_A            8 SMSVVILAAGKGTRMYSDLPKVLHPL---AGKPMVQHVIDAAMKL--------G---AQHVHLVYGHGGELLKKTLADP-   72 (459)
T ss_dssp             CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHHH--------T---CSCEEEEESSCHHHHHHHC----
T ss_pred             cceEEEECCCCCccCCCCCCcccCee---CCeeHHHHHHHHHHhC--------C---CCcEEEEeCCCHHHHHHHhccC-
Confidence            68999999999999999899999999   8999999999988642        2   4444444455577888777642 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                        +     +.+..|                     ..+.|+++.+.+..+.     +  ...+++++++.|.++.   ++
T Consensus        73 --~-----~~~v~~---------------------~~~~g~~~~i~~~~~~-----~--~~~~~~lv~~~D~P~i---~~  114 (459)
T 4fce_A           73 --S-----LNWVLQ---------------------AEQLGTGHAMQQAAPH-----F--ADDEDILMLYGDVPLI---SV  114 (459)
T ss_dssp             ---------CEEEC---------------------SSCCCHHHHHHHHGGG-----S--CTTSEEEEEETTCTTC---CH
T ss_pred             --C-----cEEEeC---------------------CCCCCcHHHHHHHHHh-----c--CCCCcEEEEeCCcccC---CH
Confidence              2     222222                     1245665544433221     1  1358999999999863   45


Q ss_pred             HHHHHHHH--cCCceEEEEEEccCCCcccceEEEECCeEE-EEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        269 TFLGYCVE--QGAHCGVKVVEKITPGESLGVLCNVDGKHK-IVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       269 ~~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~-vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      ..+..+.+  ...+.++-+++..++ .+.|.+...+|+.. ++|-....++ .         ......|++.++|+-+++
T Consensus       115 ~~i~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~~~g~v~~~~ek~~~~~~-~---------~~~~~~~~Giy~~~~~~l  183 (459)
T 4fce_A          115 DTLQRLLAAKPEGGIGLLTVKLDNP-SGYGRIVRENGDVVGIVEHKDASDA-Q---------REINEINTGILVANGRDL  183 (459)
T ss_dssp             HHHHHHHHHCCTTSEEEEEEECSCC-TTSCEEEEETTEEEEEECGGGCCTT-G---------GGCCEEEEEEEEEEHHHH
T ss_pred             HHHHHHHHHHhhCCEEEEEEecCCC-CcccEEEeCCCcEEEEEECCCCChH-H---------hhccEEEEEEEEEEHHHH
Confidence            55554443  246677777777665 46788877777532 3333222221 0         112367889999999988


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      .+++
T Consensus       184 ~~~l  187 (459)
T 4fce_A          184 KRWL  187 (459)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=98.99  E-value=4.2e-09  Score=101.81  Aligned_cols=189  Identities=17%  Similarity=0.207  Sum_probs=109.7

Q ss_pred             EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+||||||.||||+.   +.||.++|+   .|+|++++.++++.+        .|   +.-+++...+.++.+.+++.+
T Consensus         3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i---~gkpli~~~l~~l~~--------~g---~~~i~vv~~~~~~~i~~~~~~   68 (259)
T 1tzf_A            3 SKAVILAGGLGTRLSEETIVKPKPMVEI---GGKPILWHIMKMYSV--------HG---IKDFIICCGYKGYVIKEYFAN   68 (259)
T ss_dssp             CEEEEEECSCC--------CCCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECTTHHHHHHHHHT
T ss_pred             cEEEEECCCCcccCCCccCCCCccccEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEcccCHHHHHHHHhh
Confidence            5689999999999986   679999999   799999999888864        23   544455555667889999976


Q ss_pred             cCCCCCCCCcEEEEEcCC-ccccccCCcccccCCCcc----eeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030        187 NGYFGLDPAHVIFFKQRS-MPCFSLSGEILLETRDRV----ARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNI  261 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~-~P~~~~~g~~~l~~~~~i----~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~  261 (484)
                      +..++   .++.+..|+. +=.+...     ..++.+    ...+.|+|+.+......     + . +.++++|.++|++
T Consensus        69 ~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~gt~~al~~a~~~-----~-~-~~~~~lv~~~D~~  133 (259)
T 1tzf_A           69 YFLHM---SDVTFHMAENRMEVHHKR-----VEPWNVTLVDTGDSSMTGGRLKRVAEY-----V-K-DDEAFLFTYGDGV  133 (259)
T ss_dssp             HHHHH---SCEEEEGGGTEEEETTCC-----CCCCEEEEEECCSSCCHHHHHHHTGGG-----T-T-TSSCEEEEETTEE
T ss_pred             ccccc---ccccccccccceeeeecc-----ccccceeeeecccccCcHHHHHHHHHh-----c-C-CCCcEEEEECCEe
Confidence            42110   1133333321 0000000     011111    12367898877654432     1 1 3478899999996


Q ss_pred             ccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeec
Q psy10030        262 LVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFS  341 (484)
Q Consensus       262 l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~  341 (484)
                      . ...-..++.++...++++++..+  . +...+|.+...+|+  ++++.|-+.. .           ....|++.++|+
T Consensus       134 ~-~~~~~~~~~~~~~~~~~~t~~~~--~-~~~~~g~v~~~~g~--v~~~~ekp~~-~-----------~~~~~~Giy~~~  195 (259)
T 1tzf_A          134 A-DLDIKATIDFHKAHGKKATLTAT--F-PPGRFGALDIQAGQ--VRSFQEKPKG-D-----------GAMINGGFFVLN  195 (259)
T ss_dssp             E-CCCHHHHHHHHHHHCCSEEEEEE--C-CCCCSEEEEEETTE--EEEEEESCSC-C-----------SCCEECCCEEEC
T ss_pred             c-ccCHHHHHHHHHHhCCeEEEEEe--c-CCCCccEEEEcCCE--EEEEEecCCC-C-----------CceEEEEEEEeC
Confidence            4 32223467777777887765433  2 33467877766664  4455443321 0           125677888888


Q ss_pred             HHHH
Q psy10030        342 LECL  345 (484)
Q Consensus       342 l~~l  345 (484)
                      -+++
T Consensus       196 ~~~l  199 (259)
T 1tzf_A          196 PSVI  199 (259)
T ss_dssp             GGGG
T ss_pred             HHHH
Confidence            7654

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=98.94  E-value=6.4e-09  Score=101.86  Aligned_cols=185  Identities=18%  Similarity=0.131  Sum_probs=111.4

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.||||+   ||.+.||   .|||++++.+++++.        .|   +.-++..++  ++.+.+++++  
T Consensus         9 ~~~aIIlA~G~stRl~---~K~L~~i---~GkPli~~~l~~l~~--------~~---i~~VvVvt~--~~~i~~~~~~--   67 (256)
T 3tqd_A            9 EFRVIIPARFDSTRLP---GKALVDI---AGKPMIQHVYESAIK--------SG---AEEVVIATD--DKRIRQVAED--   67 (256)
T ss_dssp             CCEEEEECCCC---CT---TGGGCEE---TTEEHHHHHHHHHHH--------TT---CSEEEEEES--CHHHHHHHHH--
T ss_pred             CceEEEEcCCCCCCCC---CCCeeeE---CCchHHHHHHHHHHh--------CC---CCEEEEECC--HHHHHHHHHH--
Confidence            5789999999999997   8999999   899999999998864        23   433333333  5888888876  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       ||.+   +.+-.                     ...|.|++.+..++..      +...+.++++++++|+++.   +|
T Consensus        68 -~g~~---v~~~~---------------------~~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli---~~  113 (256)
T 3tqd_A           68 -FGAV---VCMTS---------------------SDHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI---PP  113 (256)
T ss_dssp             -TTCE---EEECC---------------------TTCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC---CH
T ss_pred             -cCCe---EEEeC---------------------CCCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC---CH
Confidence             5633   21101                     1235677776655432      2112578999999999974   45


Q ss_pred             HHH----HHHHHc-CCceEEEEEEccCCC-----cccceEEEECCeEEEEEeccCCcccccccccC--C-Ccccccccce
Q psy10030        269 TFL----GYCVEQ-GAHCGVKVVEKITPG-----ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQ--T-GRLKFNLGSI  335 (484)
Q Consensus       269 ~~l----g~~~~~-~~~~~~~vv~k~~~~-----e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~--~-g~~~f~~~Ni  335 (484)
                      ..+    ..+.++ ++++++-+++-.++.     ..+++++..+|+  ++.+++-+-...++....  . ....-.+.|+
T Consensus       114 ~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~--~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~  191 (256)
T 3tqd_A          114 DAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNY--ALYFSHAPIPWGRDTFSDKENLQLNGSHYRHV  191 (256)
T ss_dssp             HHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSB--EEEEESSCSSCCTTTTTCGGGCCCSSCCEEEE
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCE--EeEEecCCCCCCCcccccccccccCCcceEEE
Confidence            443    444443 567777777653221     135666655675  455555332101110000  0 0001236899


Q ss_pred             eeeeecHHHHHHHhh
Q psy10030        336 CNHYFSLECLQRMVK  350 (484)
Q Consensus       336 ~~~~~~l~~l~~~~~  350 (484)
                      +.+.|+-++|++..+
T Consensus       192 GiY~y~~~~l~~~~~  206 (256)
T 3tqd_A          192 GIYAYRVGFLEEYLS  206 (256)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             EEEEcCHHHHHHHHh
Confidence            999999999999874

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=98.93  E-value=4.8e-08  Score=102.08  Aligned_cols=177  Identities=18%  Similarity=0.201  Sum_probs=110.2

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+|+||||.||||+.+.||.++|+   .|+|++++.++++..        .|   +.-+++...+..+.+.+++.++ 
T Consensus         5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i---~gkpli~~~l~~l~~--------~~---~~~iivv~~~~~~~i~~~~~~~-   69 (456)
T 2v0h_A            5 ALSAVILAAGKGTRMYSDLPKVLHTI---AGKPMVKHVIDTAHQ--------LG---SENIHLIYGHGGDLMRTHLANE-   69 (456)
T ss_dssp             CEEEEEECCCCCGGGCSSSCGGGSEE---TTEEHHHHHHHHHHH--------TT---CSCEEEEECTTHHHHHHHTTTC-
T ss_pred             cceEEEECCCCCcccCCCCCccccEE---CCccHHHHHHHHHHh--------CC---CCcEEEEeCCCHHHHHHHhhcC-
Confidence            68899999999999998889999999   899999999988864        23   4444444455567777776542 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                        +     +.+..|                     ..+.|+++.+....+.     +  ...+++++++.|+++.   ++
T Consensus        70 --~-----~~~v~~---------------------~~~~g~~~~~~~~~~~-----~--~~~~~vlv~~~D~P~i---~~  111 (456)
T 2v0h_A           70 --Q-----VNWVLQ---------------------TEQLGTAHAVQQAAPF-----F--KDNENIVVLYGDAPLI---TK  111 (456)
T ss_dssp             --C-----CEEEEC---------------------SCCCCHHHHHHHHGGG-----C--CTTSEEEEEETTCTTC---CH
T ss_pred             --C-----cEEEeC---------------------CCCCCcHHHHHHHHHh-----c--CCCCeEEEEcCCccee---CH
Confidence              2     222221                     1245666544433221     1  1257999999999863   34


Q ss_pred             HHHHHHHHc--CCceEEEEEEccCCCcccceEEEECCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        269 TFLGYCVEQ--GAHCGVKVVEKITPGESLGVLCNVDGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       269 ~~lg~~~~~--~~~~~~~vv~k~~~~e~~G~l~~~~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      ..+..+.+.  ..++++-+++..+| ...|.+...+|+. .++|..+..+. .         ......|++.+.|+.+.|
T Consensus       112 ~~i~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~~~g~v~~~~ek~~~~~~-~---------~~~~~~~~Giy~~~~~~l  180 (456)
T 2v0h_A          112 ETLEKLIEAKPENGIALLTVNLDNP-TGYGRIIRENGNVVAIVEQKDANAE-Q---------LNIKEVNTGVMVSDGASF  180 (456)
T ss_dssp             HHHHHHHHHCCTTSEEEEEEECSSC-TTSCEEEEETTEEEEEECTTTCCHH-H---------HTCCEEEEEEEEEEHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEEeecCCC-CccceEEEcCCcEEEEEECCCCChh-H---------hcCcEEEEEEEEEEHHHH
Confidence            444433321  25666666666655 3467776556653 23343222211 0         012357888899999877


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      .+..
T Consensus       181 ~~~l  184 (456)
T 2v0h_A          181 KKWL  184 (456)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=98.93  E-value=9e-09  Score=101.26  Aligned_cols=183  Identities=16%  Similarity=0.109  Sum_probs=116.7

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~  187 (484)
                      ++.+||||||.||||+   +|.+.|+   .|+|++++.++++..        .|   +. ++|.| +  ++.+.+++++ 
T Consensus        18 ~~~aIIlA~G~stRlp---~K~L~~i---~GkPmi~~~l~~l~~--------~~---i~~IvV~t-~--~~~i~~~~~~-   76 (264)
T 3k8d_A           18 SFVVIIPARYASTRLP---GKPLVDI---NGKPMIVHVLERARE--------SG---AERIIVAT-D--HEDVARAVEA-   76 (264)
T ss_dssp             CCEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHH--------TT---CSEEEEEE-S--CHHHHHHHHH-
T ss_pred             ceEEEEEcCCCCCCCC---CcceeeE---CCeEHHHHHHHHHHh--------CC---CCEEEEEC-C--HHHHHHHHHH-
Confidence            5789999999999994   5999999   999999999998864        23   33 34444 3  6788888876 


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                        ||..   +.+-.|                     ..|.|++++..++.      .+...+.++++++++|+++.   +
T Consensus        77 --~g~~---v~~~~~---------------------~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli---~  121 (264)
T 3k8d_A           77 --AGGE---VCMTRA---------------------DHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMI---P  121 (264)
T ss_dssp             --TTCE---EEECCT---------------------TCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTC---C
T ss_pred             --cCCE---EEEecC---------------------CCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccC---C
Confidence              5532   211011                     23678887665542      22213578999999999974   4


Q ss_pred             HHH----HHHHHHcCCceEEEEEEccCCCc-----ccceEEEECCeEEEEEeccCCc-cccccccc--CCCcccccccce
Q psy10030        268 PTF----LGYCVEQGAHCGVKVVEKITPGE-----SLGVLCNVDGKHKIVEYSELGN-CSVFETQD--QTGRLKFNLGSI  335 (484)
Q Consensus       268 p~~----lg~~~~~~~~~~~~vv~k~~~~e-----~~G~l~~~~g~~~vvEyse~~~-e~~~~~~~--~~g~~~f~~~Ni  335 (484)
                      |..    +..+.+.++++++-+++-.++.+     .++++...+|+  ++.+++-+. . .++...  ..-...-...|+
T Consensus       122 ~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~--~l~fsr~~ip~-~r~~~~~~~~~~~~~~~~~~  198 (264)
T 3k8d_A          122 ATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGY--ALYFSRATIPW-DRDRFAEGLETVGDNFLRHL  198 (264)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSB--EEEEESSCCSC-CHHHHHHCSSCCCSCCEEEC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCe--EEEEecCCCCC-CCccccccccccCCcceEEE
Confidence            544    44445567889988887664432     23555444564  556666432 2 111000  000001236799


Q ss_pred             eeeeecHHHHHHHhh
Q psy10030        336 CNHYFSLECLQRMVK  350 (484)
Q Consensus       336 ~~~~~~l~~l~~~~~  350 (484)
                      +.+.|+-++|++...
T Consensus       199 GiY~y~~~~l~~~~~  213 (264)
T 3k8d_A          199 GIYGYRAGFIRRYVN  213 (264)
T ss_dssp             SEEEEEHHHHHHHHH
T ss_pred             EEEEECHHHHHHHHh
Confidence            999999999998864

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=98.89  E-value=5.4e-10  Score=115.84  Aligned_cols=96  Identities=26%  Similarity=0.376  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccc------------cccCCCCc
Q psy10030         15 GKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSE------------VQVFPPNC   82 (484)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~------------~~p~~~~~   82 (484)
                      .+|++.|+++|++|+|||++||||||||||.++||||++|+++  .++.+.++...+..+            -..+|+..
T Consensus        21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~--~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~I   98 (405)
T 3oc9_A           21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFE--IPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFL   98 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSS--SCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEE
T ss_pred             HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCC--CCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEE
Confidence            4899999999999999999999999999999999999999886  234333333222111            13567777


Q ss_pred             ccCCCCCChhhHHHHHHh----chh-----cccCCCEEEEE
Q psy10030         83 LSGVNTVDASTLGKYREL----GLK-----LISRGDVAVIV  114 (484)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~----G~~-----~i~~gkvavvi  114 (484)
                      |.+..+  .+...++-+.    |++     .+.++++.++-
T Consensus        99 MtS~~t--~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~  137 (405)
T 3oc9_A           99 MTNEET--IEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVD  137 (405)
T ss_dssp             EECTTT--HHHHHHHHHHTGGGGSCTTSEEEEECCEEECBC
T ss_pred             EeCCcc--HHHHHHHHHhCcccCCCccceEEEeeCceeEEe
Confidence            776543  3444444433    442     23455555553

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.88  E-value=4.9e-08  Score=101.59  Aligned_cols=196  Identities=17%  Similarity=0.218  Sum_probs=122.6

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      ++.+||||||.||||+   .+.||.++|+   .|+ |++++.++++..        .|   +.-+++...+.++.+.+++
T Consensus        12 ~~~avILAaG~gtRl~plT~~~pK~llpi---~gk~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~i~~~~   77 (420)
T 3brk_X           12 DAMAYVLAGGRGSRLKELTDRRAKPAVYF---GGKARIIDFALSNALN--------SG---IRRIGVATQYKAHSLIRHL   77 (420)
T ss_dssp             GEEEEEEECCCCGGGGGGGSSSCGGGSEE---TTTEETHHHHHHHHHH--------TT---CCEEEEEECTTCHHHHHHH
T ss_pred             ceEEEEEcCCCCCccchhhcCCccccccc---CCCCcHHHHHHHHHHh--------CC---CCeEEEEeCCChHHHHHHH
Confidence            5789999999999998   6789999999   899 999999998864        23   5555556667788999999


Q ss_pred             HHcCCCCCCC----CcEEEEEcCCccccccCCcccccCCCcceecc---CCCchHhHHHhhcChHHHHHHcCCeEEEEEe
Q psy10030        185 ERNGYFGLDP----AHVIFFKQRSMPCFSLSGEILLETRDRVARSP---DGHGGLYHALGATGILDTMHTRGIKHIHVYC  257 (484)
Q Consensus       185 ~~~~~fgl~~----~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P---~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~  257 (484)
                      ++.  |+++.    ..+.+.                . .......|   .|+++.+...     ++.+...+.++++|++
T Consensus        78 ~~~--~~~~~~~~~~~v~i~----------------~-~~~~~~~~~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~  133 (420)
T 3brk_X           78 QRG--WDFFRPERNESFDIL----------------P-ASQRVSETQWYEGTADAVYQN-----IDIIEPYAPEYMVILA  133 (420)
T ss_dssp             HHH--SCCCCGGGTCEEEEE----------------C-CC-------CCCCHHHHHHTT-----HHHHHHHCCSEEEEEE
T ss_pred             hhh--hccccccccCCEEEe----------------C-ccccccCCccccCCHHHHHHH-----HHHHHhcCCCEEEEec
Confidence            875  45431    112110                0 00000013   6777766532     2334333568999999


Q ss_pred             CCCCccccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccce
Q psy10030        258 VDNILVKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSI  335 (484)
Q Consensus       258 vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni  335 (484)
                      .|++. ...--.++..+.++++++++-+.+.. .+....|++... +|+  ++++.|-+.. ..+..+.   ......|+
T Consensus       134 ~D~~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~--v~~~~ekp~~-~~~~~~~---~~~~~~~~  206 (420)
T 3brk_X          134 GDHIY-KMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDE--IIDFIEKPAD-PPGIPGN---EGFALASM  206 (420)
T ss_dssp             SSCEE-CBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSB--EEEEEESCSS-CCCBTTB---TTEEEEEE
T ss_pred             ccEEE-chHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCc--EEEeEeCCCc-ccccccc---ccceEEee
Confidence            99964 33334577888888888877666542 123467887654 454  3444443322 1111111   11246789


Q ss_pred             eeeeecHHHHHHHh
Q psy10030        336 CNHYFSLECLQRMV  349 (484)
Q Consensus       336 ~~~~~~l~~l~~~~  349 (484)
                      +.++|+-++|.+.+
T Consensus       207 Giy~~~~~~l~~~l  220 (420)
T 3brk_X          207 GIYVFHTKFLMEAV  220 (420)
T ss_dssp             EEEEEEHHHHHHHH
T ss_pred             eeEEEeHHHHHHHH
Confidence            99999998876655

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=98.86  E-value=8.8e-09  Score=103.12  Aligned_cols=188  Identities=15%  Similarity=0.116  Sum_probs=104.6

Q ss_pred             CEEEEEEcCCCCccccc----cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA----DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREY  183 (484)
Q Consensus       109 kvavviLaGG~GTRLG~----~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~  183 (484)
                      ++.+||||||.||||+.    +.||.++|+  ..|+|++++.++++..           . + .++|.|.....+.+.++
T Consensus         4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i--~gg~pli~~~l~~l~~-----------~-~~~i~vv~~~~~~~~i~~~   69 (308)
T 2qh5_A            4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKL--FDHKSLFELSFKRNAS-----------L-VDETLIVCNEKHYFLALEE   69 (308)
T ss_dssp             CEEEEEECC-------------CCGGGCTT--BTTBCHHHHHHHHHHT-----------T-CSEEEEEEEGGGHHHHHHH
T ss_pred             ccEEEEEcCCCCccCCccCCCCCCCEEEEC--CCCCCHHHHHHHHHHc-----------c-CCCEEEEEChhHHHHHHHH
Confidence            57889999999999962    579999998  2389999999888853           2 3 34555554434677788


Q ss_pred             HHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcc
Q psy10030        184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV  263 (484)
Q Consensus       184 l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~  263 (484)
                      ++++  +|++  ++.+..|                     ..|.|+|+.+......     +  ..-++++|+++|+++.
T Consensus        70 ~~~~--~~~~--~~~~i~~---------------------~~~~gt~~al~~a~~~-----l--~~~~~~lv~~~D~~~~  117 (308)
T 2qh5_A           70 IKNE--IKNK--SVGFLLE---------------------SLSKNTANAIALSALM-----S--DKEDLLIVTPSDHLIK  117 (308)
T ss_dssp             TTTT--CSSC--EEEEEEE---------------------SSCCCHHHHHHHHHHT-----S--CTTSEEEEEESSCBCC
T ss_pred             HHHh--hCCC--ccEEEeC---------------------CCCCChHHHHHHHHHH-----h--CCCCeEEEEcCCcccc
Confidence            7653  4542  2332222                     2367888886654321     1  1245799999999852


Q ss_pred             ccC-CHHHHHH---HHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeee
Q psy10030        264 KVG-DPTFLGY---CVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNH  338 (484)
Q Consensus       264 ~~~-Dp~~lg~---~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~  338 (484)
                      ... --.++..   +.+++.++++.+.+. .+....|++... +|+  |+++.|-|....++.....|   -...|++.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~g~i~~d~~~~--V~~~~Ekp~~~~~~~~~~~g---~~~~n~Giy  191 (308)
T 2qh5_A          118 DLQAYENAIKKAIDLAQKGFLVTFGVSID-KPNTEFGYIESPNGLD--VKRFIEKPSLDKAIEFQKSG---GFYFNSGMF  191 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEEEECS-SCCTTSEEEECSSSSB--CSEEEESCCHHHHHHHHHHC---CEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEEecC-CCCCCceEEEECCCCE--EEEEEECCChHHHHHHhhcC---CeEEEeEEE
Confidence            111 1124444   445677777666654 355678888643 343  33343333220111000011   136789999


Q ss_pred             eecHHHHHHH
Q psy10030        339 YFSLECLQRM  348 (484)
Q Consensus       339 ~~~l~~l~~~  348 (484)
                      +|+.+++.+.
T Consensus       192 ~~~~~~ll~~  201 (308)
T 2qh5_A          192 VFQAGVFLDE  201 (308)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHHH
Confidence            9998865333

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=98.85  E-value=2.1e-08  Score=99.66  Aligned_cols=183  Identities=17%  Similarity=0.166  Sum_probs=112.2

Q ss_pred             CEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      .+.+||||||.||||+.   +.||.++||   .|+|++++.++++..        .|   +.-+++...+..+.+.+++.
T Consensus         8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~--------~g---i~~i~vv~~~~~~~i~~~~~   73 (302)
T 2e3d_A            8 VKKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA--------AG---ITEIVLVTHSSKNSIENHFD   73 (302)
T ss_dssp             CCEEEEECCSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECGGGHHHHHHHS
T ss_pred             ccEEEEECCcCcccCCccccCCCceeeEE---CCeEHHHHHHHHHHH--------CC---CCEEEEEeCCCHHHHHHHHh
Confidence            46789999999999985   679999999   899999999988863        23   44444444556788888886


Q ss_pred             HcC----------------------CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHH
Q psy10030        186 RNG----------------------YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILD  243 (484)
Q Consensus       186 ~~~----------------------~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~  243 (484)
                      +..                      .+|.   +|.+..                     ...|.|+|+.+.....     
T Consensus        74 ~~~~l~~~l~~~~~~~~l~~~~~~~~~~~---~i~~~~---------------------~~~~~Gt~~al~~a~~-----  124 (302)
T 2e3d_A           74 TSFELEAMLEKRVKRQLLDEVQSICPPHV---TIMQVR---------------------QGLAKGLGHAVLCAHP-----  124 (302)
T ss_dssp             CCHHHHHHHC----CHHHHHHHHTSCTTC---EEEEEE---------------------CSSCCCHHHHHHHTHH-----
T ss_pred             cchhhhhhhhhccchhhhhhhhhccccCc---ceEEee---------------------CCccCCHHHHHHHHHH-----
Confidence            410                      0111   121111                     1236788886664322     


Q ss_pred             HHHHcCCeEEEEEeCCCCccc---cC---CH-HHHHHHHHcCCceEEEEEEccCCCcccceEEE-----ECC-eEEEEEe
Q psy10030        244 TMHTRGIKHIHVYCVDNILVK---VG---DP-TFLGYCVEQGAHCGVKVVEKITPGESLGVLCN-----VDG-KHKIVEY  310 (484)
Q Consensus       244 ~l~~~G~~~i~v~~vDN~l~~---~~---Dp-~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~-----~~g-~~~vvEy  310 (484)
                      .+   +-++++|+++|+++..   ..   +. .++..+.+.++ +++-+.+. .+...+|++..     .+| -..+..+
T Consensus       125 ~~---~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~-~~~~~yg~v~~~~~~~~~g~~~~v~~~  199 (302)
T 2e3d_A          125 VV---GDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPV-ADVTAYGVVDCKGVELAPGESVPMVGV  199 (302)
T ss_dssp             HH---CSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEEC-SCGGGSEEEECTTCCCCTTCEEEECEE
T ss_pred             Hc---CCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEc-cCCCCccEEEecccccCCCCceeEEEE
Confidence            22   2368999999999621   12   22 35666766666 54444444 35567888764     345 2244444


Q ss_pred             ccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030        311 SELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM  348 (484)
Q Consensus       311 se~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~  348 (484)
                      .|-+....     .    .-...|++.++|+-++++.+
T Consensus       200 ~ekp~~~~-----~----~~~~~~~Giyi~~~~~l~~l  228 (302)
T 2e3d_A          200 VEKPKADV-----A----PSNLAIVGRYVLSADIWPLL  228 (302)
T ss_dssp             EESCCTTT-----C----SCSEEEEEEEEECTTHHHHH
T ss_pred             EECCCCCc-----c----ccceEEEEEEEECHHHHHHH
Confidence            44332100     0    11356888999998766544

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=98.85  E-value=5e-09  Score=102.29  Aligned_cols=171  Identities=15%  Similarity=0.142  Sum_probs=103.0

Q ss_pred             EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc-
Q psy10030        112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN-  187 (484)
Q Consensus       112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~-  187 (484)
                      +||||||+||||+.   +.||.|+||   .|+|++++.++.+..       ..|   +.-+++...+.++ +.++++++ 
T Consensus         2 ~iIlAaG~GtRl~plt~~~PK~llpv---~gkpli~~~l~~l~~-------~~g---i~~iivv~~~~~~-~~~~~~~~~   67 (255)
T 4evw_A            2 IVIPMAGMSSRFFKAGYTQPKYMLEA---HGQTLFEHSVNSFAA-------YFA---STPFLFIVRNVYD-TAVFVREKA   67 (255)
T ss_dssp             EEEECCSCCHHHHHTTCCSCGGGCEE---TTEEHHHHHHGGGGG-------GTT---TSCEEEEEESSTT-HHHHHHHHH
T ss_pred             EEEEcCCCCcccccCCCCCCccccEE---CCeEHHHHHHHHHhc-------cCC---CceEEEEECchhh-hHHHHHHHH
Confidence            68999999999964   789999999   899999999988753       124   4443333345555 66666553 


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHH---cCCeEEEEEeCCCCccc
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHT---RGIKHIHVYCVDNILVK  264 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~---~G~~~i~v~~vDN~l~~  264 (484)
                      ..+|.+... .+..|                     ..|.|+|+.......     .+.+   .+-+.++|+++|++...
T Consensus        68 ~~~~~~~~~-~~~~~---------------------~~~~Gt~~av~~a~~-----~l~~~~~~~~~~~lV~~gD~l~~~  120 (255)
T 4evw_A           68 TQLGIKQFY-IAELH---------------------TETRGQAETVTLGLE-----ELAKQGVDYQGSITVFNIDTFRPN  120 (255)
T ss_dssp             HHHTCSSEE-EEEES---------------------SCCSSHHHHHHHHHH-----HHHHTTCCCCSCEEECCTTEECTT
T ss_pred             HHcCCCCce-EEEeC---------------------CCCCCHHHHHHHHHH-----HHhhcccCCCCcEEEEeCCEEEec
Confidence            123432111 22223                     236899887775432     2321   24566999999996421


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ...+.+     ..+.+.++-+.+..+|  ++|++... +|-.+|+++.|-.+.             -+..|+..++|+-.
T Consensus       121 ~~~~~~-----~~~~~~~i~~~~~~~p--~yG~v~~d~~g~~~V~~i~EK~~~-------------s~~~~~GiY~f~~~  180 (255)
T 4evw_A          121 FVFPDI-----SQHSDGYLEVFQGGGD--NWSFAKPEHAGSTKVIQTAEKNPI-------------SDLCSTGLYHFNRK  180 (255)
T ss_dssp             CCCCGG-----GGSSSEEEEEEECCSS--CSCEEEESSTTCCBEEEEESSSCS-------------SSEEEEEEEEESCH
T ss_pred             chhHHH-----hhcCCcEEEEEecCCC--ceeEEEECCCCCeEEEEEEeccCc-------------cCcEEEeEEEECcH
Confidence            111222     3567777666665544  78988765 452234444332111             03578889999864

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=98.81  E-value=7.6e-10  Score=117.82  Aligned_cols=53  Identities=42%  Similarity=0.698  Sum_probs=48.0

Q ss_pred             CCCCCChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHH
Q psy10030          5 GVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQ   57 (484)
Q Consensus         5 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~   57 (484)
                      +..+++++.+.+|++.|+++|++||+||++||||||||||.+.||+|++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~  131 (486)
T 2yqc_A           79 STLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELP  131 (486)
T ss_dssp             ETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCT
T ss_pred             ccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCC
Confidence            34455678889999999999999999999999999999999999999999864

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=98.81  E-value=4.8e-08  Score=102.43  Aligned_cols=207  Identities=13%  Similarity=0.164  Sum_probs=114.6

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      ++.+|+||||.||||+   .+.||.|+|+   .|+ |++++.++++..        .|   +.-+++...+.++.+.+++
T Consensus        20 ~~~avILAaG~gtRl~plT~~~pK~llpi---~g~~pli~~~l~~l~~--------~g---~~~i~vv~~~~~~~i~~~~   85 (451)
T 1yp2_A           20 SVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN--------SN---ISKIYVLTQFNSASLNRHL   85 (451)
T ss_dssp             HEEEEEC------CCTTTTTTSCGGGCEE---TTTEETTHHHHHHHHH--------TT---CCEEEEEESCCCHHHHHHH
T ss_pred             ceEEEEECCCCCCcccchhcCCcceeeEE---CCcceeHHHHHHHHHH--------CC---CCEEEEEeccCHHHHHHHH
Confidence            3779999999999998   5789999999   798 999999888864        34   5555555567788899998


Q ss_pred             HHcCCCC--CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030        185 ERNGYFG--LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL  262 (484)
Q Consensus       185 ~~~~~fg--l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l  262 (484)
                      .+.  +|  +.+    ++.++.+..+..+      ....-...+.|+|+.+....     +.+...+.++++|+++|++.
T Consensus        86 ~~~--~~~~~~~----~~~~~~v~i~~~~------~~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~~D~~~  148 (451)
T 1yp2_A           86 SRA--YASNMGG----YKNEGFVEVLAAQ------QSPENPDWFQGTADAVRQYL-----WLFEEHTVLEYLILAGDHLY  148 (451)
T ss_dssp             HHH--CC------------CCEEEEEESC------SSTTSCCCCCSHHHHHHHTH-----HHHTTSCCSEEEEECSCEEC
T ss_pred             hhh--hhccccc----ccccCcEEEeccc------ccccccccccCcHHHHHHHH-----HHHHhcCCCeEEEecCcEEE
Confidence            763  22  110    0011111111000      00000122468877666432     23322346899999999963


Q ss_pred             cccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE-CCeEEEEEeccCCcccccc-c------ccCC---Ccccc
Q psy10030        263 VKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV-DGKHKIVEYSELGNCSVFE-T------QDQT---GRLKF  330 (484)
Q Consensus       263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~-~------~~~~---g~~~f  330 (484)
                       ...-..++.++.++++++++-+.+.. .+....|++... +|  +++++.|-+....+. +      ....   .....
T Consensus       149 -~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~  225 (451)
T 1yp2_A          149 -RMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMP  225 (451)
T ss_dssp             -CCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTS--BEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCC
T ss_pred             -cCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCC--CEEEEEECCCchhhccccccccccccccccccCCc
Confidence             33223477888888888877655542 122467877654 34  445555544320000 0      0000   00012


Q ss_pred             cccceeeeeecHHHHHHHh
Q psy10030        331 NLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       331 ~~~Ni~~~~~~l~~l~~~~  349 (484)
                      ...|++.++|+-+.|.+++
T Consensus       226 ~~~~~Giy~~~~~~l~~~l  244 (451)
T 1yp2_A          226 FIASMGIYVISKDVMLNLL  244 (451)
T ss_dssp             EEEEEEEEEEEHHHHHHHH
T ss_pred             ceEEeeEEEEcHHHHHHHH
Confidence            3678999999999886655

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=98.79  E-value=2e-08  Score=99.61  Aligned_cols=186  Identities=15%  Similarity=0.154  Sum_probs=103.0

Q ss_pred             CCEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      ..+.+||||||.||||+.   ..||.++|+   .|+|++++.++++..        .|   +.-+++...+..+.+.+++
T Consensus        13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~--------~g---~~~i~vv~~~~~~~i~~~~   78 (297)
T 2ux8_A           13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPV---VDRPLIQYAVDEAVE--------AG---IEQMIFVTGRGKSALEDHF   78 (297)
T ss_dssp             CCCEEEEEECCCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECTTCHHHHHHT
T ss_pred             CccEEEEECCCCccccCccccCCCceeeeE---CCeEHHHHHHHHHHh--------CC---CCEEEEEeCCCHHHHHHHH
Confidence            357889999999999975   779999999   799999999988863        23   5555555566688888887


Q ss_pred             HHcC-------------------C-CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHH
Q psy10030        185 ERNG-------------------Y-FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDT  244 (484)
Q Consensus       185 ~~~~-------------------~-fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~  244 (484)
                      .+..                   . +|+   ++.+..                     ...|.|+|+.+....     +.
T Consensus        79 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~---~i~~~~---------------------~~~~~Gt~~al~~a~-----~~  129 (297)
T 2ux8_A           79 DIAYELEATMAARGKSLDVLDGTRLKPG---NIAYVR---------------------QQEPMGLGHAVWCAR-----DI  129 (297)
T ss_dssp             SCCHHHHHHHHTTTCCGGGGTTSCCSTT---SEEEEE---------------------CCSCCCHHHHHHTTH-----HH
T ss_pred             hhhhhhhhhhhhccchhhhhhhcccCCC---ceEEEe---------------------CCCCCChHHHHHHHH-----HH
Confidence            5410                   0 111   122111                     123678888766432     22


Q ss_pred             HHHcCCeEEEEEeCCCCccc-cCC-HHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE---CCeEEEEEeccCCcccc
Q psy10030        245 MHTRGIKHIHVYCVDNILVK-VGD-PTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV---DGKHKIVEYSELGNCSV  318 (484)
Q Consensus       245 l~~~G~~~i~v~~vDN~l~~-~~D-p~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~---~g~~~vvEyse~~~e~~  318 (484)
                      +   +-++++|+++|+++.. ..+ -.++..+.+.++ .++.+.+.. .+..++|++...   +|...+.++.|-+....
T Consensus       130 ~---~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~  205 (297)
T 2ux8_A          130 V---GDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGT  205 (297)
T ss_dssp             H---CSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC-----------
T ss_pred             c---CCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCC
Confidence            2   2478999999999521 122 235666666665 333232221 123467776532   33234444444332100


Q ss_pred             cccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030        319 FETQDQTGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       319 ~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                           .    .-...|++.++|+-++++.+.
T Consensus       206 -----~----~~~~~~~Giyi~~~~~l~~l~  227 (297)
T 2ux8_A          206 -----A----PSNLSVIGRYILQPEVMRILE  227 (297)
T ss_dssp             ------------CCCEEEEEEECTHHHHHHH
T ss_pred             -----C----CccEEEEEEEEECHHHHHHHH
Confidence                 0    113578899999988765543

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=98.75  E-value=8.1e-08  Score=100.89  Aligned_cols=180  Identities=16%  Similarity=0.163  Sum_probs=112.2

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      -.+|+||||.||||+.+.||.++|+   .|+|++++.++++..        .|   +.-+++...+..+.+.+++.+   
T Consensus        12 ~~~vIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~--------~g---~~~iivv~~~~~~~i~~~~~~---   74 (468)
T 1hm9_A           12 NFAIILAAGKGTRMKSDLPKVLHKV---AGISMLEHVFRSVGA--------IQ---PEKTVTVVGHKAELVEEVLAG---   74 (468)
T ss_dssp             EEEEEECCCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHT--------TC---CSEEEEEECTTHHHHHHSSSS---
T ss_pred             CcEEEEcCCCCccCCCCCCcEeeEE---CCccHHHHHHHHHHh--------cC---CCCEEEEECCCHHHHHHHhCC---
Confidence            4578999999999998889999999   899999999988853        23   544555555555655554432   


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH-
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP-  268 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp-  268 (484)
                            .+.+..|                     ..+.|+++.+....     +.+ ....++++|++.|.++....+. 
T Consensus        75 ------~i~~v~~---------------------~~~~G~~~sl~~a~-----~~~-~~~~~~vlv~~~D~P~i~~~~i~  121 (468)
T 1hm9_A           75 ------QTEFVTQ---------------------SEQLGTGHAVMMTE-----PIL-EGLSGHTLVIAGDTPLITGESLK  121 (468)
T ss_dssp             ------SSEEEEC---------------------SSCCCHHHHHHTTH-----HHH-TTCCSEEEEEETTCTTCCHHHHH
T ss_pred             ------CcEEEeC---------------------CccCChHHHHHHHH-----HHh-ccCCCeEEEEeCCccccCHHHHH
Confidence                  1222111                     12457776655322     223 2225899999999986432222 


Q ss_pred             HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030        269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR  347 (484)
Q Consensus       269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~  347 (484)
                      .++..+.+.++++++-+.+..+| ...|.+... +|+  ++++.+-+.. ..+.      ......|+..++|+.++|.+
T Consensus       122 ~l~~~~~~~~~~~~i~~~~~~~~-~~~g~v~~d~~g~--v~~~~ek~~~-~~~~------~~~~~~~~Giy~f~~~~l~~  191 (468)
T 1hm9_A          122 NLIDFHINHKNVATILTAETDNP-FGYGRIVRNDNAE--VLRIVEQKDA-TDFE------KQIKEINTGTYVFDNERLFE  191 (468)
T ss_dssp             HHHHHHHHTTCSEEEEEEECSCC-TTSCEEEECTTCC--EEEEECTTTC-CTTG------GGCCEEEEEEEEEEHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEEeccCCC-CceeEEEECCCCC--EEEEEECCCC-ChHH------hcCeEEEEEEEEEEHHHHHH
Confidence            24556666788888877777655 357877654 443  4444443321 0000      11236788899999987765


Q ss_pred             Hh
Q psy10030        348 MV  349 (484)
Q Consensus       348 ~~  349 (484)
                      .+
T Consensus       192 ~l  193 (468)
T 1hm9_A          192 AL  193 (468)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=98.75  E-value=1.3e-07  Score=90.66  Aligned_cols=174  Identities=14%  Similarity=0.122  Sum_probs=104.8

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.||||+   ||.+.|+   .|+|++++.+++++.        .| ..-.+++.|. +  +.+.++++++ 
T Consensus         2 ~~~aiIlA~G~~~R~~---~K~l~~i---~g~pli~~~i~~~~~--------~~-~~~~ivvv~~-~--~~i~~~~~~~-   62 (245)
T 1h7e_A            2 KAVIVIPARYGSSRLP---GKPLLDI---VGKPMIQHVYERALQ--------VA-GVAEVWVATD-D--PRVEQAVQAF-   62 (245)
T ss_dssp             CEEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHT--------CT-TCCEEEEEES-C--HHHHHHHHHT-
T ss_pred             CeEEEEEcCCcCCCCC---CCccccc---CCchHHHHHHHHHHh--------CC-CCCeEEEECC-c--HHHHHHHHHc-
Confidence            5789999999999996   9999999   899999999888853        22 1124455553 3  7788888763 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                        |+.   +  +.               . +   ...+.|+++++.++..         .+.++++|+++|+++.   ++
T Consensus        63 --~~~---~--~~---------------~-~---~~~~~g~~~~~~~~~~---------~~~~~~lv~~~D~P~~---~~  104 (245)
T 1h7e_A           63 --GGK---A--IM---------------T-R---NDHESGTDRLVEVMHK---------VEADIYINLQGDEPMI---RP  104 (245)
T ss_dssp             --TCE---E--EE---------------C-C---SCCSSHHHHHHHHHHH---------SCCSEEEECCTTCTTC---CH
T ss_pred             --CCe---E--Ee---------------C-C---CccCCcHHHHHHHHHh---------CCCCEEEEEcCCcCcC---CH
Confidence              421   2  11               0 0   1124566666665432         2468999999999973   34


Q ss_pred             H----HHHHHHHc-CCceEEEEEEccCCC-----cccceEEEECCeEEEEEecc--CCcccccccccCCCccccccccee
Q psy10030        269 T----FLGYCVEQ-GAHCGVKVVEKITPG-----ESLGVLCNVDGKHKIVEYSE--LGNCSVFETQDQTGRLKFNLGSIC  336 (484)
Q Consensus       269 ~----~lg~~~~~-~~~~~~~vv~k~~~~-----e~~G~l~~~~g~~~vvEyse--~~~e~~~~~~~~~g~~~f~~~Ni~  336 (484)
                      .    ++..+... ++++++-+++. ++.     ..++++...+|+.  +.+++  .+..  ++  + +  ..-...|++
T Consensus       105 ~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~--r~--~-~--~~~~~~~~g  174 (245)
T 1h7e_A          105 RDVETLLQGMRDDPALPVATLCHAI-SAAEAAEPSTVKVVVNTRQDA--LYFSRSPIPYP--RN--A-E--KARYLKHVG  174 (245)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEEEE-CHHHHTCTTSCEEEECTTCBE--EEEESSCSSCC--TT--G-G--GCCEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeecC-CHHHhcCCCCcEEEECCCCcE--EEeecCCCCCC--cc--c-c--cCceeEEEE
Confidence            4    34444455 67777766665 221     1233333345643  33333  1211  11  0 0  000245888


Q ss_pred             eeeecHHHHHHHh
Q psy10030        337 NHYFSLECLQRMV  349 (484)
Q Consensus       337 ~~~~~l~~l~~~~  349 (484)
                      .++|+.++|.+..
T Consensus       175 ~y~~~~~~l~~~~  187 (245)
T 1h7e_A          175 IYAYRRDVLQNYS  187 (245)
T ss_dssp             EEEEEHHHHHHGG
T ss_pred             EEEcCHHHHHHHH
Confidence            9999998887654

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=98.73  E-value=1.8e-09  Score=116.69  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             CChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc--ccCCCCcccCC
Q psy10030          9 VDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV--QVFPPNCLSGV   86 (484)
Q Consensus         9 ~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~--~p~~~~~~~~~   86 (484)
                      .+++++.+|++.|+++|+  ++||++||||||||||.++||++++++++  .++++.++...+..+.  .++|+..|.+.
T Consensus        96 ~~~~~~~~~~~~Gl~~i~--kvavvllaGGlGTRLG~~~pK~~lpv~~~--s~ks~lql~~e~i~~~~g~~iPl~IMTS~  171 (630)
T 3ogz_A           96 RRTAERTALENAGTAMLC--KTVFVLVAGGLGERLGYSSIKVSLPVETA--TNTTYLAYYLRWAQRVGGKEVPFVIMTSD  171 (630)
T ss_dssp             CCCHHHHHHHHHHHHHGG--GEEEEEECCCEEGGGTEEEEGGGSBSCTT--TCCBHHHHHHHHHHHHHCTTCCEEEEECT
T ss_pred             CCHHHHHHHHHHhHHHHh--hceEEEecCCcccccCCCCCcccceecCC--CCCcHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            367889999999999998  99999999999999999999999999875  3454444443222222  46788888887


Q ss_pred             CCCChhhHHHHHHhch
Q psy10030         87 NTVDASTLGKYRELGL  102 (484)
Q Consensus        87 ~~~~~~~~~~~~~~G~  102 (484)
                      .+ ..+..+-+++-|+
T Consensus       172 ~T-~~~T~~~~~~fgl  186 (630)
T 3ogz_A          172 DT-HDRTLQLLRELQL  186 (630)
T ss_dssp             TT-HHHHHHHHHHTTC
T ss_pred             cc-hHHHHHHHHHhCC
Confidence            54 2333344555454

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.71  E-value=4.3e-08  Score=98.74  Aligned_cols=185  Identities=16%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+||||||.||||+.   +.||.++||   .|+|++++.++++..        .|   +.-+++...+..+.+.+++..
T Consensus        13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~--------~g---i~~iivv~~~~~~~i~~~~~~   78 (323)
T 2pa4_A           13 KTVVVPAAGLGTRFLPATKTVPKELLPV---VDTPGIELIAAEAAE--------LG---ATRLAIITAPNKAGVLAHFER   78 (323)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECTTCHHHHHTTSC
T ss_pred             eEEEEECCCCccccCccccCCCceeeeE---CCEEHHHHHHHHHHh--------CC---CCEEEEEecCcHHHHHHHHhc
Confidence            6789999999999975   789999999   799999999988863        23   545555556667777776642


Q ss_pred             cCC---------------------CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHH
Q psy10030        187 NGY---------------------FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTM  245 (484)
Q Consensus       187 ~~~---------------------fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l  245 (484)
                      ...                     +|+   +|.+..|                     ..|.|+|+.+......     +
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~g~---~i~~~~~---------------------~~~~Gt~~al~~a~~~-----l  129 (323)
T 2pa4_A           79 SSELEETLMERGKTDQVEIIRRAADLI---KAVPVTQ---------------------DKPLGLGHAVGLAESV-----L  129 (323)
T ss_dssp             CHHHHHHHHHTTCHHHHHHTTHHHHHC---EEEEEEC---------------------SSCCCHHHHHHTTGGG-----S
T ss_pred             cchhhhhhhccchhhhhhhhhccccCc---ceEEEeC---------------------CccCCcHHHHHHHHHH-----h
Confidence            100                     111   1222111                     1256888877654321     1


Q ss_pred             HHcCCeEEEEEeCCCCccc-cCCH-HHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE----CCe-EEEEEeccCCccc
Q psy10030        246 HTRGIKHIHVYCVDNILVK-VGDP-TFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV----DGK-HKIVEYSELGNCS  317 (484)
Q Consensus       246 ~~~G~~~i~v~~vDN~l~~-~~Dp-~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~----~g~-~~vvEyse~~~e~  317 (484)
                       ..+.++++|+++|+++ . ..+. .++.++.+.++ .++-+.+.. .+....|++...    ++. ..|+.+.+-+...
T Consensus       130 -~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~  206 (323)
T 2pa4_A          130 -DDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIE  206 (323)
T ss_dssp             -CSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTT
T ss_pred             -cCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCc
Confidence             1234569999999997 3 2222 35566655554 333333321 123467877643    332 3455555543210


Q ss_pred             ccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030        318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       318 ~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                      .     .    .-...|++.++|+-++++.+.
T Consensus       207 ~-----~----~~~~~~~GiY~~~~~~~~~l~  229 (323)
T 2pa4_A          207 D-----A----PSRLAATGRYLLDRKIFDALR  229 (323)
T ss_dssp             T-----C----SCSEEEEEEEEEETHHHHHHH
T ss_pred             c-----c----cccEEEEEEEEECHHHHHHHH
Confidence            1     0    113568889999988765553

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=98.70  E-value=2.2e-07  Score=90.69  Aligned_cols=180  Identities=13%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHH-HHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQA-EKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~-~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ..+||||||.||||+   +|.+.++   .|+|++++.+ +++++        .+   +.-+++.++  ++.+.+++++  
T Consensus         2 ~~aiIlA~G~stR~~---~K~L~~i---~GkPli~~~i~~~~~~--------~~---~~~vvVvt~--~~~i~~~~~~--   60 (253)
T 4fcu_A            2 KHIVIPARFSSSRLP---GKPLLLI---HDRPMILRVVDQAKKV--------EG---FDDLCVATD--DERIAEICRA--   60 (253)
T ss_dssp             EEEEEECCSCCTTST---TGGGSEE---TTEEHHHHHHHHHHTC--------TT---CCEEEEEES--CHHHHHHHHT--
T ss_pred             eEEEEEeCCCCCCCC---CCceeeE---CCeEhHHHHHHHHHHh--------cC---CCEEEEECC--HHHHHHHHHH--
Confidence            468999999999997   5999999   9999999999 87742        22   444444443  5888888865  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       ||.+   +.+-.|                     ..+.|++.+..++      +.+...+.++++++++|++|.   +|
T Consensus        61 -~g~~---v~~~~~---------------------~~~~Gt~~i~~a~------~~~~~~~~d~vlv~~gD~Pli---~~  106 (253)
T 4fcu_A           61 -EGVD---VVLTSA---------------------DHPSGTDRLSEVA------RIKGWDADDIIVNVQGDEPLL---PA  106 (253)
T ss_dssp             -TTCC---EEECCT---------------------TCCCHHHHHHHHH------HHHTCCTTCEEEECCTTCTTC---CH
T ss_pred             -cCCe---EEEeCC---------------------CCCChHHHHHHHH------HhcCcCCCCEEEEEeCCcccC---CH
Confidence             5543   210001                     1244554444443      223222568999999999974   45


Q ss_pred             HHH----HHHHHc-CCceEEEEEEc------cCCCcccceEEEECCeEEEEEecc--CCcccccccccCCCc--cccccc
Q psy10030        269 TFL----GYCVEQ-GAHCGVKVVEK------ITPGESLGVLCNVDGKHKIVEYSE--LGNCSVFETQDQTGR--LKFNLG  333 (484)
Q Consensus       269 ~~l----g~~~~~-~~~~~~~vv~k------~~~~e~~G~l~~~~g~~~vvEyse--~~~e~~~~~~~~~g~--~~f~~~  333 (484)
                      ..+    ..+.+. +..+++-+++-      .+|.. +++++..+|+.  +-+++  +|..  ++....+..  ......
T Consensus       107 ~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~d~~g~~--l~fsr~~ip~~--r~~~~~~~~~~~~~~~~  181 (253)
T 4fcu_A          107 QLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVVMSKQNEA--LYFSRATIPYD--RDGAKRDEPTLHTQAFR  181 (253)
T ss_dssp             HHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEEECTTSBE--EEEESSCCSCC--TTTSSSSSCCCCSCCEE
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEEECCCCeE--EEecCCCCCCC--CCcccccccccccceeE
Confidence            544    334444 35666666652      34543 56666556753  33444  3322  111000000  011245


Q ss_pred             ceeeeeecHHHHHHHh
Q psy10030        334 SICNHYFSLECLQRMV  349 (484)
Q Consensus       334 Ni~~~~~~l~~l~~~~  349 (484)
                      |++.+.|+.++|++..
T Consensus       182 ~~GiY~f~~~~l~~~~  197 (253)
T 4fcu_A          182 HLGLYAYRVSLLQEYV  197 (253)
T ss_dssp             EEEEEEEEHHHHHHHT
T ss_pred             EEEEEEeCHHHHHHHH
Confidence            9999999999999876

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=98.68  E-value=5.6e-09  Score=111.62  Aligned_cols=48  Identities=44%  Similarity=0.724  Sum_probs=45.0

Q ss_pred             ChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHH
Q psy10030         10 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQ   57 (484)
Q Consensus        10 ~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~   57 (484)
                      +++.+.+|+++|+++|+.||+||++||||||||||.+.||+|++|+++
T Consensus        83 ~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~  130 (505)
T 1jv1_A           83 DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLP  130 (505)
T ss_dssp             TGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCT
T ss_pred             ChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecC
Confidence            567788999999999999999999999999999999999999999764

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=98.60  E-value=5.3e-07  Score=85.54  Aligned_cols=174  Identities=20%  Similarity=0.142  Sum_probs=100.5

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHHc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~~  187 (484)
                      ++.+||||||.||||+   ||.+.|+   .|+|++++.++++..           . + .++|.| .+  +.+.++++++
T Consensus         2 ~~~aiIlA~G~g~R~~---~K~l~~i---~g~pli~~~l~~~~~-----------~-~~~i~v~~-~~--~~i~~~~~~~   60 (234)
T 2y6p_A            2 RRAVIIPARLGSTRLK---EKPLKNL---LGKPLIRWVVEGLVK-----------T-GERVILAT-DS--ERVKEVVEDL   60 (234)
T ss_dssp             CEEEEEECCSCCTTTT---TGGGCEE---TTEEHHHHHHHHHHT-----------T-TSCEEEEE-SC--HHHHHHHTTT
T ss_pred             ceEEEEEcCCCCCCCC---CCcceeE---CCEEHHHHHHHHHHH-----------h-CCEEEEEC-Ch--HHHHHHHHhc
Confidence            4788999999999998   9999999   899999999888853           2 3 344444 33  6777777541


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                          .   ++  +...                   ...+.|+++++.++..         .+.++++++++|+++....+
T Consensus        61 ----~---~~--~~~~-------------------~~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~~~~~  103 (234)
T 2y6p_A           61 ----C---EV--FLTP-------------------SDLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFVYEED  103 (234)
T ss_dssp             ----S---EE--EECC-------------------TTCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCCCHHH
T ss_pred             ----e---EE--EECC-------------------cccccchHHHHHHHHh---------CCCCEEEEecCCcCcCCHHH
Confidence                1   12  1100                   1125677777655432         24689999999998642111


Q ss_pred             H-HHHHHHHHcCCceEEEEEEcc----CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        268 P-TFLGYCVEQGAHCGVKVVEKI----TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       268 p-~~lg~~~~~~~~~~~~vv~k~----~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      - .++..+.+.+ +..+-+....    +| ..++++...+|+  ++.+.+-+....++..+    ... ..|.+.++|+.
T Consensus       104 i~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--v~~~~e~~~~~~~~~~~----~~~-~~~~giy~~~~  174 (234)
T 2y6p_A          104 IKLIFRELEKGE-RVVTLARKDKEAYERP-EDVKVVLDREGY--ALYFSRSPIPYFRKNDT----FYP-LKHVGIYGFRK  174 (234)
T ss_dssp             HHHHHHHHHHTC-SEEEEEEECSGGGGCT-TSCEEEECTTSB--EEEEESSCCSCCSSCCS----SCC-EEEEEEEEEEH
T ss_pred             HHHHHHHHHhCC-CeEEEecCCHHHhcCC-CceEEEEcCCCC--EeeeecCCCCccccccc----cee-eEEEEEEEcCH
Confidence            1 2344555555 4433333321    23 234543333554  33444322110011000    111 34889999999


Q ss_pred             HHHHHHh
Q psy10030        343 ECLQRMV  349 (484)
Q Consensus       343 ~~l~~~~  349 (484)
                      +.+.++.
T Consensus       175 ~~l~~~~  181 (234)
T 2y6p_A          175 ETLMEFG  181 (234)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887765

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=98.59  E-value=1.2e-07  Score=96.23  Aligned_cols=184  Identities=16%  Similarity=0.172  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCcccc----ccCCCccccccCCCC-CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLG----ADYPKGMYNIGLPSG-KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       110 vavviLaGG~GTRLG----~~~PKg~~~i~l~~~-~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      +.+||||||.||||+    ...||.++|+   .| +|++++.++++..+       .| . -..+|.|.....+.+.+++
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l---~g~~pli~~~l~~l~~~-------~~-~-~~iivvt~~~~~~~i~~~l   69 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKL---FGNKSLMRWTFERVLEE-------MD-P-KDVIVVTHKDYVERTKKEL   69 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCC---BTTBCHHHHHHHHHHTT-------CC-G-GGEEEEEEGGGHHHHHHHC
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEEC---CCCCcHHHHHHHHHhcc-------CC-C-CcEEEEcChHHHHHHHHHh
Confidence            457899999999997    4589999999   67 99999999888531       12 1 1345555443334555555


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .+..     ..++                 +      .+..|.|+|+........      . ..-++++|++.|.++. 
T Consensus        70 ~~~~-----~~~i-----------------i------~e~~~~gta~ai~~a~~~------~-~~~~~~lvl~~D~~~~-  113 (336)
T 2x65_A           70 PELP-----DENI-----------------I------AEPMKKNTAPACFIGTKL------A-DDDEPVLVLPADHRIP-  113 (336)
T ss_dssp             TTSC-----GGGE-----------------E------EESSCCCHHHHHHHHHTT------S-CTTCEEEEEETTCBCC-
T ss_pred             hccc-----cceE-----------------E------eCCCCCCcHHHHHHHHHh------h-CCCCEEEEEcCCceec-
Confidence            4321     0111                 1      122356888766543321      1 2247899999999863 


Q ss_pred             cCCHH--------HHHHHHHcCCceEEEEEEccCCCcccceEEEEC----CeEEEEEeccCCcccccccccCCCcccccc
Q psy10030        265 VGDPT--------FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD----GKHKIVEYSELGNCSVFETQDQTGRLKFNL  332 (484)
Q Consensus       265 ~~Dp~--------~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~----g~~~vvEyse~~~e~~~~~~~~~g~~~f~~  332 (484)
                        ++.        ++.++.+.+..+++-+.+ ..|...+|.+...+    +-..|..+.|-|....++..-..|.   .+
T Consensus       114 --~~~~~~~~l~~~~~~~~~~~~~vt~~i~p-~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~---y~  187 (336)
T 2x65_A          114 --DTKKFWKTVKKALDALEKYDGLFTFGIVP-TRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESGR---FL  187 (336)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHCSEEEEEECC-CSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHTC---EE
T ss_pred             --cHHHHHHHHHHHHHHHHhcCCeEEEEeec-ccCCCCceEEEECCccCCCccEEEEEEECCChHHHHHHHhcCC---eE
Confidence              332        122344446666665444 44666788886432    1145555666554312111001121   26


Q ss_pred             cceeeeeecHHHHHH
Q psy10030        333 GSICNHYFSLECLQR  347 (484)
Q Consensus       333 ~Ni~~~~~~l~~l~~  347 (484)
                      .|++.++|+.+.+.+
T Consensus       188 ~n~Giy~~~~~~ll~  202 (336)
T 2x65_A          188 WNSGMFLWKAREFIE  202 (336)
T ss_dssp             EEEEEEEEEHHHHHH
T ss_pred             EEeeeEEEEHHHHHH
Confidence            789999999987743

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=98.58  E-value=3.5e-07  Score=88.90  Aligned_cols=167  Identities=17%  Similarity=0.144  Sum_probs=94.8

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      ++.+||||||.||||+   .+.||.++|+   .|+|++++.++++..        .|   +.-+++...+..+.+..+.+
T Consensus        25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i---~gkpli~~~l~~l~~--------~g---~~~i~vv~~~~~~~i~~~~~   90 (254)
T 1jyk_A           25 RVKAIILAAGLGTRLRPLTENTPKALVQV---NQKPLIEYQIEFLKE--------KG---INDIIIIVGYLKEQFDYLKE   90 (254)
T ss_dssp             CCEEEEEECSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCCEEEEECTTGGGGTHHHH
T ss_pred             CceEEEECCCCcccCCcccCCCCCEEeeE---CCEEHHHHHHHHHHH--------CC---CCeEEEEeCCcHHHHHHHHH
Confidence            5789999999999998   4789999999   899999999988864        23   33333344455666766554


Q ss_pred             HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      +   +|     +.+..+..                   +.+.|+++.+......     +     +.++|+++|+++.. 
T Consensus        91 ~---~~-----~~iv~~~~-------------------~~~~g~~~al~~a~~~-----~-----~~~lv~~~D~~~~~-  132 (254)
T 1jyk_A           91 K---YG-----VRLVFNDK-------------------YADYNNFYSLYLVKEE-----L-----ANSYVIDADNYLFK-  132 (254)
T ss_dssp             H---HC-----CEEEECTT-------------------TTTSCTHHHHHTTGGG-----C-----TTEEEEETTEEESS-
T ss_pred             h---CC-----cEEEECCC-------------------ccCCCcHHHHHHHHHH-----C-----CCEEEEeCCcccCH-
Confidence            3   23     22222211                   1245665544432221     1     23789999998743 


Q ss_pred             CCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        266 GDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                       +.  +-.+.+.+..++   +...+|...+|++...+|+  ++.+.+- +.             ..+.|++.++|+-+++
T Consensus       133 -~~--~~~~~~~~~~~t---~~~~~~~~~~~v~~d~~g~--v~~~~e~-~~-------------~~~~~~Giy~~~~~~~  190 (254)
T 1jyk_A          133 -NM--FRNDLTRSTYFS---VYREDCTNEWFLVYGDDYK--VQDIIVD-SK-------------AGRILSGVSFWDAPTA  190 (254)
T ss_dssp             -CC--CCSCCCSEEEEE---CEESSCSSCCEEEECTTCB--EEEEECC-CS-------------SEEBCCSEEEECHHHH
T ss_pred             -HH--HHHHHhCCceEE---EEcccCCCCeEEEECCCCe--EEEEEEC-CC-------------CCcEEEEEEEEcHHHH
Confidence             21  211122222222   2233454456655333454  3333331 11             1357888889987765


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      +.+.
T Consensus       191 ~~l~  194 (254)
T 1jyk_A          191 EKIV  194 (254)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=98.56  E-value=1.1e-06  Score=85.50  Aligned_cols=184  Identities=16%  Similarity=0.094  Sum_probs=105.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.||||+   +|.+.|+   .|+|++++.++++..        .| . -.+++.|.   ++.+.+++++  
T Consensus         2 ~~~aiIlA~G~g~R~~---~K~l~~~---~gkpli~~~l~~l~~--------~~-~-~~ivvv~~---~~~i~~~~~~--   60 (262)
T 1vic_A            2 SFTVIIPARFASSRLP---GKPLADI---KGKPMIQHVFEKALQ--------SG-A-SRVIIATD---NENVADVAKS--   60 (262)
T ss_dssp             CCEEEEECCCCCSSST---TGGGCEE---TTEEHHHHHHHHHHH--------TT-C-SEEEEEES---CHHHHHHHHH--
T ss_pred             CcEEEEEcCCCCCCCC---CCccccC---CCeEHHHHHHHHHHh--------CC-C-ceEEEECC---cHHHHHHHHh--
Confidence            4678999999999996   5999999   899999999988864        23 2 23455453   3667888875  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       +|..     ++.+.                   ...+.|+|.+...      +..+...+.++++|+++|+++....+-
T Consensus        61 -~~~~-----~~~~~-------------------~~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i~~~~i  109 (262)
T 1vic_A           61 -FGAE-----VCMTS-------------------VNHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLIPPVIV  109 (262)
T ss_dssp             -TTCE-----EEECC-------------------CSSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTCCHHHH
T ss_pred             -cCCE-----EEECC-------------------ccccCChHHHHHH------HHHhccCCCCEEEEEeCCcCccCHHHH
Confidence             3422     12211                   1124556533222      222222356899999999987432211


Q ss_pred             -HHHHHHHHcCCceEEEEEEccCC----CcccceEE-EECCeEEEEEecc--CCcccccccc-------cCCCccccccc
Q psy10030        269 -TFLGYCVEQGAHCGVKVVEKITP----GESLGVLC-NVDGKHKIVEYSE--LGNCSVFETQ-------DQTGRLKFNLG  333 (484)
Q Consensus       269 -~~lg~~~~~~~~~~~~vv~k~~~----~e~~G~l~-~~~g~~~vvEyse--~~~e~~~~~~-------~~~g~~~f~~~  333 (484)
                       .++..+.+.++++++-+++..++    ...++.++ ..+|+.  +.+++  ++..  ++..       ..+- ......
T Consensus       110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v--~~f~~~~~~~~--r~~~~~~~~~~~~~~-p~~~~~  184 (262)
T 1vic_A          110 RQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYV--LYFSRSVIPYD--RDQFMNLQDVQKVQL-SDAYLR  184 (262)
T ss_dssp             HHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBE--EEEESSCSSCC--HHHHTTCSCGGGCCC-CTTCEE
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCE--eeeecCCCCcC--Ccccccccccccccc-ccceEE
Confidence             24455556678887777776543    11223333 335553  33333  2211  1100       0000 111246


Q ss_pred             ceeeeeecHHHHHHHh
Q psy10030        334 SICNHYFSLECLQRMV  349 (484)
Q Consensus       334 Ni~~~~~~l~~l~~~~  349 (484)
                      |++.++|+.+++..+.
T Consensus       185 ~~giy~~~~~~l~~~~  200 (262)
T 1vic_A          185 HIGIYAYRAGFIKQYV  200 (262)
T ss_dssp             EEEEEEEEHHHHHHHH
T ss_pred             EEEEEEeeHHHHHHHH
Confidence            8999999998887754

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=98.41  E-value=3.7e-06  Score=79.67  Aligned_cols=130  Identities=13%  Similarity=0.122  Sum_probs=79.1

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHHc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~~  187 (484)
                      ++.+||||||.||||+   ||.+.|+   .|+|++++.++++++.        +  .+ .++|.| .  ++.+.+++++ 
T Consensus         4 ~~~aiIlA~G~g~R~~---~K~l~~i---~gkpll~~~l~~~~~~--------~--~~~~ivvv~-~--~~~i~~~~~~-   63 (228)
T 1ezi_A            4 QNIAVILARQNSKGLP---LKNLRKM---NGISLLGHTINAAISS--------K--CFDRIIVST-D--GGLIAEEAKN-   63 (228)
T ss_dssp             EEEEEEECCSSCSSST---TTTTCEE---TTEEHHHHHHHHHHHH--------C--CCSEEEEEE-S--CHHHHHHHHH-
T ss_pred             ceEEEEecCCCCCCCC---Cccccee---CCcCHHHHHHHHHHhC--------C--CCCEEEEEC-C--CHHHHHHHHH-
Confidence            4789999999999998   9999999   8999999999988642        2  13 344545 3  4667778765 


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                        +|..   +  +.+..                .  . +.|..|...++...  ++.+ ....++++++++|+++.   +
T Consensus        64 --~~~~---~--~~~~~----------------~--~-~~~~~g~~~sv~~~--l~~~-~~~~d~vlv~~~D~P~~---~  111 (228)
T 1ezi_A           64 --FGVE---V--VLRPA----------------E--L-ASDTASSISGVIHA--LETI-GSNSGTVTLLQPTSPLR---T  111 (228)
T ss_dssp             --TTCE---E--EECCC-------------------------CHHHHHHHHH--HHHH-TCCSEEEEECCTTCTTC---C
T ss_pred             --cCCE---E--EeCch----------------H--H-cCCCCChHHHHHHH--HHHh-CCCCCEEEEEcCCCCcC---C
Confidence              3432   2  21110                0  0 11222222222211  1222 23468999999999973   5


Q ss_pred             HHHHHHHHH----cCCceEEEEEEccC
Q psy10030        268 PTFLGYCVE----QGAHCGVKVVEKIT  290 (484)
Q Consensus       268 p~~lg~~~~----~~~~~~~~vv~k~~  290 (484)
                      +..+.-.++    .++++++-+++..+
T Consensus       112 ~~~i~~l~~~~~~~~~~~~~~~~~~~~  138 (228)
T 1ezi_A          112 GAHIREAFSLFDEKIKGSVVSACPMEH  138 (228)
T ss_dssp             HHHHHHHHTTCCTTTCCCEEEEEECSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence            555544433    35677777777664

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=98.40  E-value=2.1e-06  Score=81.84  Aligned_cols=132  Identities=16%  Similarity=0.150  Sum_probs=80.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.||||+   +|.+.|+   .|+|++++.++++++.        + .--.+++.|   .++.+.+++++  
T Consensus         3 ~~~aiIlA~G~s~R~~---~K~l~~i---~Gkpli~~~i~~~~~~--------~-~~~~ivv~~---~~~~i~~~~~~--   62 (229)
T 1qwj_A            3 HLAALVLARGGSKGIP---LKNIKRL---AGVPLIGWVLRAALDA--------G-VFQSVWVST---DHDEIENVAKQ--   62 (229)
T ss_dssp             CEEEEEECCSCCSSSS---CTTTSEE---TTEEHHHHHHHHHHHH--------T-CCSEEEEEE---SCHHHHHHHHH--
T ss_pred             cEEEEEEcCCCCCCCC---CcccceE---CCEEHHHHHHHHHHhC--------C-CcCEEEEEC---ChHHHHHHHHH--
Confidence            5789999999999996   5999999   8999999999988642        2 111344444   35778888876  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                       +|..     ++.+..-               .....+.|++.+..++..      +  .+.++++++++|+++.   ++
T Consensus        63 -~g~~-----~~~~~~~---------------~~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli---~~  110 (229)
T 1qwj_A           63 -FGAQ-----VHRRSSE---------------TSKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCL---HP  110 (229)
T ss_dssp             -TTCE-----EEECCGG---------------GSSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTC---CH
T ss_pred             -cCCE-----EEeChhh---------------hcCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcC---CH
Confidence             3532     2322210               000011222333443322      1  2568999999999974   44


Q ss_pred             HH----HHHHHHcCCceEEEEEEccCCC
Q psy10030        269 TF----LGYCVEQGAHCGVKVVEKITPG  292 (484)
Q Consensus       269 ~~----lg~~~~~~~~~~~~vv~k~~~~  292 (484)
                      ..    +..+...+++..+.+++..+|.
T Consensus       111 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~  138 (229)
T 1qwj_A          111 TDLQKVAEMIREEGYDSVFSVVRRHQFR  138 (229)
T ss_dssp             HHHHHHHHHHHSSCCSEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeeccChh
Confidence            43    4444456777666565444453

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=98.38  E-value=8.1e-07  Score=90.22  Aligned_cols=183  Identities=17%  Similarity=0.155  Sum_probs=103.7

Q ss_pred             EEEEEEcCCCCcccc----ccCCCccccccCCCC-CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLG----ADYPKGMYNIGLPSG-KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       110 vavviLaGG~GTRLG----~~~PKg~~~i~l~~~-~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      +.+||||||.||||.    ...||.++|+   .| +|++++.++++..+       .| . -..+|.|.....+.+.++ 
T Consensus         3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l---~G~~pli~~~l~~l~~~-------~~-~-~~iiVvt~~~~~~~i~~~-   69 (337)
T 2cu2_A            3 TYALVMAGGRGERLWPLSREDRPKPFLPL---FEGKTLLEATLERLAPL-------VP-P-ERTLLAVRRDQEAVARPY-   69 (337)
T ss_dssp             EEEEEECCCCCGGGTTTCBTTBCGGGCBC---GGGCBHHHHHHHHHTTT-------SC-G-GGEEEEEEGGGHHHHGGG-
T ss_pred             eEEEEEcCCCcccCCccCCCCCCceEEEc---CCCChHHHHHHHHHhCc-------CC-C-CCEEEEcChHHHHHHHHH-
Confidence            678999999999996    4679999999   67 99999999888532       02 1 134455543222233222 


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                           ++  ...+                       .++..|.|+|........   +..  ..+-++++|++.|.++  
T Consensus        70 -----l~--~~~~-----------------------i~e~~~~gta~ai~~a~~---l~~--~~~~~~~lvl~~D~~~--  112 (337)
T 2cu2_A           70 -----AD--GIRL-----------------------LLEPLGRDTAGAVLLGVA---EAL--KEGAERLLVLPADHYV--  112 (337)
T ss_dssp             -----CS--SSEE-----------------------EEESSCCHHHHHHHHHHH---HHH--HHTCSEEEEEESSCEE--
T ss_pred             -----hc--cCce-----------------------EecCCCCCcHHHHHHHHH---Hhc--cCCCCEEEEEECCccC--
Confidence                 22  0011                       112235677776554332   211  1236789999999986  


Q ss_pred             cCCHHH----HHHHH---HcCCceEEEEEEccCCCcccceEEEEC---CeEEEEEeccCCcccccccccCCCcccccccc
Q psy10030        265 VGDPTF----LGYCV---EQGAHCGVKVVEKITPGESLGVLCNVD---GKHKIVEYSELGNCSVFETQDQTGRLKFNLGS  334 (484)
Q Consensus       265 ~~Dp~~----lg~~~---~~~~~~~~~vv~k~~~~e~~G~l~~~~---g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~N  334 (484)
                       .++..    +..+.   ..+..+++-+.+.. |...+|.+...+   +-..|..+.|-|....++..-..|    ...|
T Consensus       113 -~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~-~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g----~~~n  186 (337)
T 2cu2_A          113 -GDDEAYREALATMLEAAEEGFVVALGLRPTR-PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKG----YVWN  186 (337)
T ss_dssp             -SCHHHHHHHHHHHHHHCCTTCEEEEEECCSS-CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTT----CEEE
T ss_pred             -CCHHHHHHHHHHHHHHHHcCCeEEEeeccCC-CCCCceEEEECCcccccCeEEEEEeCCChHHHHHHhhcC----CEEE
Confidence             34432    22111   23555655555543 666789886432   114566666655431211100112    2678


Q ss_pred             eeeeeecHHHH-HHH
Q psy10030        335 ICNHYFSLECL-QRM  348 (484)
Q Consensus       335 i~~~~~~l~~l-~~~  348 (484)
                      .+.++|+.+.+ +.+
T Consensus       187 ~Giy~f~~~~ll~~l  201 (337)
T 2cu2_A          187 GGVFAFAPATMAELF  201 (337)
T ss_dssp             EEEEEECHHHHHHHH
T ss_pred             EEEEEEeHHHHHHHH
Confidence            99999999876 444

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=98.36  E-value=2.1e-06  Score=79.04  Aligned_cols=113  Identities=21%  Similarity=0.194  Sum_probs=71.2

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.|||||  .||.+.++   .|+|++++.++++..        .+   +.-+++.+.+..+.+.+++++  
T Consensus         5 ~~~~iIlA~G~~~R~g--~~K~l~~~---~g~pli~~~l~~l~~--------~~---~~~i~vv~~~~~~~~~~~~~~--   66 (199)
T 2waw_A            5 RVTGVVLAAGYSRRLG--TPKQLLPL---GDTTLLGATLAMARR--------CP---FDQLIVTLGGAADEVLEKVEL--   66 (199)
T ss_dssp             CEEEEEEESSCCTTTT--SCGGGCEE---TTEEHHHHHHHHHHT--------SS---CSEEEEEECTTHHHHHHHSCC--
T ss_pred             ceEEEEECCCCCCCCC--CCEEeCEe---CccCHHHHHHHHHHh--------CC---CCcEEEEeCCCHHHHHHHhcc--
Confidence            5889999999999998  79999999   899999999888853        22   433444444445566555533  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCc-hHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHG-GLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~G-gi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                       +|+.   +  +.+.                    ..+.|.+ +++.++...       ..+.++++|+++|.++.   +
T Consensus        67 -~~~~---~--~~~~--------------------~~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~---~  110 (199)
T 2waw_A           67 -DGLD---I--VLVD--------------------DAGLGCSSSLKSALTWV-------DPTAEGIVLMLGDQPGI---T  110 (199)
T ss_dssp             -TTSE---E--EECC--------------------CCCTTCCCHHHHHHHTS-------CTTCSEEEEEETTCTTC---C
T ss_pred             -CCCE---E--EECC--------------------CcccCHHHHHHHHHHhh-------hccCCeEEEEeCCcccC---C
Confidence             3321   2  1110                    1124533 445444321       12578999999999963   4


Q ss_pred             HHHHHHHH
Q psy10030        268 PTFLGYCV  275 (484)
Q Consensus       268 p~~lg~~~  275 (484)
                      +..+....
T Consensus       111 ~~~i~~l~  118 (199)
T 2waw_A          111 ASAVASLI  118 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=98.35  E-value=5.4e-06  Score=85.12  Aligned_cols=166  Identities=19%  Similarity=0.208  Sum_probs=102.0

Q ss_pred             EEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      .+|+||||.||||+   ...||.++|+   .|+|++++.++++.+        .|   +.-+++...+.   +.+++++.
T Consensus         2 ~aiIlA~G~g~R~~plt~~~~K~ll~i---~g~pli~~~l~~l~~--------~~---~~~i~vv~~~~---i~~~~~~~   64 (401)
T 2ggo_A            2 KAFILAAGSGERLEPITHTRPKAFVPI---LSKPLIEYQIEYLRK--------CG---IRDITVIVSSK---NKEYFEKK   64 (401)
T ss_dssp             EEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECGG---GHHHHHHH
T ss_pred             eEEEEcCcCccccCcccCCCCcceeeE---CCEeHHHHHHHHHHH--------CC---CCEEEEEeCHH---HHHHhhcc
Confidence            47999999999997   3689999999   899999999998864        23   44344333332   77788764


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                      ..      .+.+..+..                    .|.|.++.+....+           .++++|.+.|.++.   +
T Consensus        65 ~~------~i~~~~~~~--------------------~~~g~~~~l~~~~~-----------~~~~lv~~~D~~~~---~  104 (401)
T 2ggo_A           65 LK------EISIVTQKD--------------------DIKGTGAAILSAKF-----------NDEALIIYGDLFFS---N  104 (401)
T ss_dssp             CT------TCEEEECCT--------------------TCCBSTTTGGGCCC-----------SSEEEEEETTEEES---C
T ss_pred             CC------cEEEEeCCC--------------------CCCChHHHHHHhcc-----------CCCEEEEeCccccc---c
Confidence            21      232222110                    14566655543321           47889999999852   3


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ  346 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~  346 (484)
                      +..+..+.+ ..+.++-+.+..++ .+.|.+... +|+  +.++.+-+.. -          .....|++.++|+-+.++
T Consensus       105 ~~~~~~l~~-~~~~~i~~~~~~~~-~~~~~v~~~~~g~--v~~~~ek~~~-~----------~~~~~~~Giy~~~~~~~~  169 (401)
T 2ggo_A          105 EKEICNIIT-LKENAIIGVKVSNP-KDYGVLVLDNQNN--LSKIIEKPEI-P----------PSNLINAGIYKLNSDIFT  169 (401)
T ss_dssp             SHHHHHHTT-CSSEEEEEEECSCC-SSSCEEEECTTSS--EEEEECSCSS-C----------SCSEEEEEEEEEETHHHH
T ss_pred             HHHHHHHHH-hcCCEEEEEEcCCC-cceeEEEECCCCe--EEEEEECCCC-C----------CCcEEEEEEEEEcHHHHH
Confidence            455555544 56676666665544 356776644 343  3444432221 0          113567778889988775


Q ss_pred             HH
Q psy10030        347 RM  348 (484)
Q Consensus       347 ~~  348 (484)
                      .+
T Consensus       170 ~l  171 (401)
T 2ggo_A          170 YL  171 (401)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=98.32  E-value=2.6e-06  Score=82.16  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=42.9

Q ss_pred             CEEEEEEcCCCCccccc-cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGA-DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFER  186 (484)
Q Consensus       109 kvavviLaGG~GTRLG~-~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~  186 (484)
                      ++.+||||||.|||||. +.||.++++   .|+|++++.++.+..        .+  .+. ++|.++....+.+.+.+++
T Consensus         3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l---~Gkpll~~~l~~~~~--------~~--~~~~ivvv~~~~~~~~~~~~~~~   69 (246)
T 3f1c_A            3 LIYAQILAGGKGTRMGNVSMPKQFLPL---NGKPIIVHTVEKFIL--------NT--RFDKILISSPKEWMNHAEDNIKK   69 (246)
T ss_dssp             CEEEEEECC-----C-CSSCCGGGSEE---TTEEHHHHHHHHHHT--------CT--TCSEEEEEECGGGHHHHHHHHHH
T ss_pred             ccEEEEECCccccccCCCCCCCeEEEE---CCeeHHHHHHHHHHc--------CC--CCCEEEEEeCHHHHHHHHHHHHH
Confidence            57899999999999998 889999999   899999999888753        11  143 4455544433346666666


Q ss_pred             c
Q psy10030        187 N  187 (484)
Q Consensus       187 ~  187 (484)
                      +
T Consensus        70 ~   70 (246)
T 3f1c_A           70 Y   70 (246)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=98.31  E-value=2.9e-06  Score=80.35  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=39.1

Q ss_pred             EEEEEEcCCCCccccc-cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGA-DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       110 vavviLaGG~GTRLG~-~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~  186 (484)
                      +.+||||||.|||||. +.||.++|+   .|+|++++.++++..        .+  .+ .++|.|.....+.+.+++++
T Consensus         3 ~~~iIlA~G~g~R~~~~~~~K~l~~i---~g~pli~~~l~~l~~--------~~--~~~~i~vv~~~~~~~~~~~~~~~   68 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGISNLPKQFLEL---GDRPILIHTIEKFVL--------EP--SIEKIVVGVHGDWVSHAEDLVDK   68 (236)
T ss_dssp             EEEEEEEC-----------CGGGSEE---TTEEHHHHHHHHHHT--------CT--TCCCEEEEECGGGHHHHHHHHHH
T ss_pred             eEEEEeCCccccccCCCCCCCeeeee---CCccHHHHHHHHHHc--------CC--CCCeEEEEeCHHHHHHHHHHHHh
Confidence            6789999999999996 679999999   799999999888753        11  13 34555544333667888765

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=98.30  E-value=2.7e-06  Score=78.22  Aligned_cols=114  Identities=21%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      ++.+||||||.|||||  .||.++|+   .|+|++++.++++..        .+   +.-+++.+.+..+.+.+++.+  
T Consensus         5 ~~~~iIlA~G~~~R~g--~~K~l~~~---~g~pll~~~l~~l~~--------~~---~~~i~vv~~~~~~~~~~~~~~--   66 (197)
T 2wee_A            5 QITGVVLAAGRSNRLG--TPKQLLPY---RDTTVLGATLDVARQ--------AG---FDQLILTLGGAASAVRAAMAL--   66 (197)
T ss_dssp             EEEEEEEECCCCTTTS--SCGGGSEE---TTEEHHHHHHHHHHH--------TT---CSEEEEEECTTHHHHHHHSCC--
T ss_pred             ceEEEEECCCCcccCC--CCeEcCee---CCccHHHHHHHHHHh--------cC---CCcEEEEeCCCHHHHHHHhcc--
Confidence            5789999999999997  79999999   899999999888864        22   433344444445566555532  


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCch-HhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGG-LYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Gg-i~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                       +|+.   +  +.+.                    ..+.|.++ ++.++...       ..+.++++|+.+|.++   .+
T Consensus        67 -~~~~---~--~~~~--------------------~~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~---~~  110 (197)
T 2wee_A           67 -DGTD---V--VVVE--------------------DVERGCAASLRVALARV-------HPRATGIVLMLGDQPQ---VA  110 (197)
T ss_dssp             -TTSE---E--EECC------------------------CCHHHHHHHHTTS-------CTTEEEEEEEETTCTT---CC
T ss_pred             -CCCE---E--EECC--------------------CcccCHHHHHHHHHHHh-------cccCCeEEEEeCCcCC---CC
Confidence             2321   1  1110                    01235444 33333221       1246899999999986   35


Q ss_pred             HHHHHHHHH
Q psy10030        268 PTFLGYCVE  276 (484)
Q Consensus       268 p~~lg~~~~  276 (484)
                      +..+....+
T Consensus       111 ~~~i~~l~~  119 (197)
T 2wee_A          111 PATLRRIID  119 (197)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            665554443

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=98.30  E-value=3e-06  Score=79.64  Aligned_cols=41  Identities=27%  Similarity=0.461  Sum_probs=37.1

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++.+||||||.||||+.+.||.++|+   .|+|++++.++++..
T Consensus         2 ~~~~vIlA~G~g~R~~~~~~K~l~~~---~g~pli~~~l~~l~~   42 (223)
T 2xwl_A            2 ATVAVVPAAGSGERLRAGRPKAFVTL---GGTPLLEHALSGLRA   42 (223)
T ss_dssp             CEEEEEECCCCCGGGTSSSCGGGSEE---TTEEHHHHHHHHHHH
T ss_pred             ceEEEEECCccCcccCCCCCCeeeEE---CCeEHHHHHHHHHhc
Confidence            47899999999999997789999999   799999999988864

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=98.27  E-value=1.4e-06  Score=80.61  Aligned_cols=127  Identities=17%  Similarity=0.271  Sum_probs=73.8

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      +.+||||||.|||||. .||.+.|+   .|+|++++.+++++.        .+   +.-+++...+.++.+.+++++.  
T Consensus         1 m~aiIlA~G~s~R~~~-~~K~l~~~---~g~pli~~~l~~l~~--------~~---~~~v~vv~~~~~~~i~~~~~~~--   63 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG-VEKPLIKL---CGRCLIDYVVSPLLK--------SK---VNNIFIATSPNTPKTKEYINSA--   63 (196)
T ss_dssp             CEEEEEC----CGGGG-SCGGGCEE---TTEEHHHHHHHHHHS--------SS---CCCEEEECCTTCHHHHHHHHHH--
T ss_pred             CEEEEECCCCCCcCCC-CCccEEEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEeCCChHHHHHHHHhh--
Confidence            3579999999999987 89999999   899999999998853        22   4444444455578899999874  


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHh-HHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLY-HALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~-~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                      ++.. ..+.++.                      ....|.++.+ .++..         . .++++++++|.++.   ++
T Consensus        64 ~~~~-~~~~~~~----------------------~~~~g~~~si~~al~~---------~-~~~vlv~~~D~P~i---~~  107 (196)
T 3rsb_A           64 YKDY-KNIVVID----------------------TSGKGYIEDLNECIGY---------F-SEPFLVVSSDLINL---KS  107 (196)
T ss_dssp             TTTT-TEEEE------------------------------CCCCCTTTTT---------C-SSCEEEEETTEESC---CH
T ss_pred             ccCC-CCEEEEE----------------------CCCCCcHHHHHHHHHh---------C-CCCEEEEeCCcccC---CH
Confidence            2221 1232111                      1123443333 32221         1 57899999999874   34


Q ss_pred             HH----HHHHHH-----cCCceEEEEEEcc
Q psy10030        269 TF----LGYCVE-----QGAHCGVKVVEKI  289 (484)
Q Consensus       269 ~~----lg~~~~-----~~~~~~~~vv~k~  289 (484)
                      ..    +..+.+     .+.+..+-+++..
T Consensus       108 ~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~  137 (196)
T 3rsb_A          108 KIINSIVDYFYCIKAKTPDVEALAVMIPKE  137 (196)
T ss_dssp             HHHHHHHHHHHHHHTTCC--CEEEEEEETT
T ss_pred             HHHHHHHHHHHhhhcccCCCceEEEEEEcc
Confidence            43    344444     4566667677665

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=98.25  E-value=9e-06  Score=77.25  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=39.9

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      ++.+|+||||.|||||.. ||.++|+   .|+|++++.++++..           . +.-+++.. +.++.+.+++.
T Consensus        18 ~~~~iIlA~G~g~R~~~~-~K~l~~i---~g~pli~~~l~~l~~-----------~-~~~i~vv~-~~~~~~~~~~~   77 (232)
T 2xme_A           18 LMKAVILAAGLGTRLGGV-PKPLVRV---GGCEIILRTMKLLSP-----------H-VSEFIIVA-SRYADDIDAFL   77 (232)
T ss_dssp             CEEEEEEECC------CC-CGGGCEE---TTEEHHHHHHHHHGG-----------G-EEEEEEEE-STTHHHHHHHH
T ss_pred             cceEEEECCcCcCcCCCC-CcEEeEE---CCEEHHHHHHHHHHH-----------h-CCEEEEEe-CChHHHHHHHH
Confidence            588999999999999754 9999999   899999999887753           2 33333344 56667777664

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=98.24  E-value=7.3e-06  Score=77.45  Aligned_cols=66  Identities=18%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      .++.+||||||.|||||.+.||.++++   .|+|++++.++++...        +  .+.-+++.+.+.++.+.+ +.++
T Consensus         5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~---~gkpli~~~l~~l~~~--------~--~~~~ivvv~~~~~~~~~~-~~~~   70 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFGADKPKQYVEI---GSKTVLEHVLGIFERH--------E--AVDLTVVVVSPEDTFADK-VQTA   70 (231)
T ss_dssp             CCEEEEEECC----------CCSCCEE---TTEEHHHHHHHHHHTC--------T--TCCEEEEECCTTCSTHHH-HHHH
T ss_pred             CceEEEEEcccccccCCCCCCceEeEE---CCeEHHHHHHHHHHcC--------C--CCCeEEEEECccHHHHHH-HHhc
Confidence            368899999999999997789999999   7999999999888631        1  144455555555566766 6553

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=98.24  E-value=3.9e-06  Score=80.69  Aligned_cols=128  Identities=21%  Similarity=0.311  Sum_probs=81.5

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFER  186 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~  186 (484)
                      +++++||||||.|||||.+.||.+.++   .|+|++++.++.+++.        +  .+. .++.++....+.+.+++..
T Consensus         6 ~~~~aIIlAaG~g~Rmg~~~~K~l~~l---~Gkpll~~~l~~~~~~--------~--~~~~ivVv~~~~~~~~~~~~~~~   72 (231)
T 3q80_A            6 GEVVAIVPAAGSGERLAVGVPKAFYQL---DGQTLIERAVDGLLDS--------G--VVDTVVVAVPADRTDEARQILGH   72 (231)
T ss_dssp             CCEEEEEECCCCCTTTCSSSCGGGCEE---TTEEHHHHHHHHHHHT--------S--CCCEEEEEECGGGHHHHHHHHGG
T ss_pred             CceEEEEECCCCCccCCCCCCceEEEE---CCeEHHHHHHHHHHhC--------C--CCCeEEEECChHHHHHHHHHhcC
Confidence            368999999999999999899999999   8999999999988641        1  133 4454544333555555432


Q ss_pred             cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCC---chHhHHHhhcChHHHHHH-cCCeEEEEEeCCCCc
Q psy10030        187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGH---GGLYHALGATGILDTMHT-RGIKHIHVYCVDNIL  262 (484)
Q Consensus       187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~---Ggi~~~L~~~G~l~~l~~-~G~~~i~v~~vDN~l  262 (484)
                               .+.                         ..+.|.   .+++.+|...      .. ...++++|+.+|.++
T Consensus        73 ---------~v~-------------------------~v~gg~~r~~sv~~gl~~~------~~~~~~d~Vlv~~~d~Pl  112 (231)
T 3q80_A           73 ---------RAM-------------------------IVAGGSNRTDTVNLALTVL------SGTAEPEFVLVHDAARAL  112 (231)
T ss_dssp             ---------GCE-------------------------EEECCSSHHHHHHHHHGGG------C---CCSEEEECCTTCTT
T ss_pred             ---------CeE-------------------------EEcCCCchHHHHHHHHHHh------hhcCCCCEEEEEcCCcCC
Confidence                     111                         112232   2344444321      11 135899999999997


Q ss_pred             cccCCHHHHHHHHH---cCCceEEEEEEccCC
Q psy10030        263 VKVGDPTFLGYCVE---QGAHCGVKVVEKITP  291 (484)
Q Consensus       263 ~~~~Dp~~lg~~~~---~~~~~~~~vv~k~~~  291 (484)
                         ..|..+..+++   .+.+.++-+++-.++
T Consensus       113 ---i~~~~i~~li~~~~~~~~~~i~~~p~~dt  141 (231)
T 3q80_A          113 ---TPPALVARVVEALRDGYAAVVPVLPLSDT  141 (231)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSEEEEEECCSSC
T ss_pred             ---CCHHHHHHHHHHHhhcCCeEEEEEeccCC
Confidence               45766655433   236777777766544

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=98.18  E-value=3.7e-06  Score=79.76  Aligned_cols=41  Identities=32%  Similarity=0.544  Sum_probs=37.3

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      .+.+||||||.|||||.+.||.+.|+   .|+|++++.+++++.
T Consensus        13 ~~~aiILAaG~s~Rm~~~~~K~l~~i---~Gkpli~~~i~~l~~   53 (234)
T 1vpa_A           13 MNVAILLAAGKGERMSENVPKQFLEI---EGRMLFEYPLSTFLK   53 (234)
T ss_dssp             CEEEEEEECCCCGGGCCSSCGGGCEE---TTEETTHHHHHHHHH
T ss_pred             cCeEEEEcCcchhhcCCCCCceEEEE---CCeEHHHHHHHHHHc
Confidence            57899999999999997789999999   899999999988864

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=98.18  E-value=2.5e-07  Score=97.56  Aligned_cols=92  Identities=22%  Similarity=0.268  Sum_probs=63.4

Q ss_pred             HHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----ccCCCCcccCCCCCChhhH
Q psy10030         20 LGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----QVFPPNCLSGVNTVDASTL   94 (484)
Q Consensus        20 ~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----~p~~~~~~~~~~~~~~~~~   94 (484)
                      .|+++|+  ||||++||||||||||.++|||++++.    .++++.++...+...+     .++|+..|.|..+. .+..
T Consensus        69 ~G~~~L~--kvavvlLaGGlGTRLG~~~pKg~~~v~----sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~-~~T~  141 (484)
T 3gue_A           69 ENTALLR--QAVVLKLNGGLGTGMGLNGPKSLLQVK----NGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTS-GETK  141 (484)
T ss_dssp             CCHHHHT--TEEEEEEECCCCGGGTCSSCGGGSEEE----TTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTH-HHHH
T ss_pred             HHHHHHh--hcEEEEEcCCcccccCCCCCceeeecC----CCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchh-HHHH
Confidence            5888998  899999999999999999999999996    3555555544333332     46788888887542 2222


Q ss_pred             HHHH---Hhch-----hcccCCCEEEEEEcCC
Q psy10030         95 GKYR---ELGL-----KLISRGDVAVIVLAGG  118 (484)
Q Consensus        95 ~~~~---~~G~-----~~i~~gkvavviLaGG  118 (484)
                      +-++   .-|+     ..+.|+++.++-..|+
T Consensus       142 ~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~  173 (484)
T 3gue_A          142 NFLRKYPTLYEVFDSDIELMQNRVPKIRQDNF  173 (484)
T ss_dssp             HHGGGCHHHHTTCCCCCEEECCCEECEETTTC
T ss_pred             HHHHhCcccCCCccceEEEEeCceeeEecCCC
Confidence            2222   2243     3456788888777665

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=98.14  E-value=1.4e-07  Score=100.31  Aligned_cols=73  Identities=18%  Similarity=0.252  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----ccCCCCcccCC
Q psy10030         12 STLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----QVFPPNCLSGV   86 (484)
Q Consensus        12 ~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----~p~~~~~~~~~   86 (484)
                      +.+..|++.+...++.+||||++||||||||||.++|||++++.    .++++.++.+.+...+     .++|+..|.+.
T Consensus       110 ~~l~~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~----sgktflql~~eqI~~l~~~~g~~IPl~IMTS~  185 (528)
T 3r3i_A          110 EKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVR----NENTFLDLTVQQIEHLNKTYNTDVPLVLMNSF  185 (528)
T ss_dssp             HHHTTSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEEE----TTEEHHHHHHHHHHHHHHHHTCCCCEEEEECT
T ss_pred             hhcCCccccchhhhhcCceEEEEeCCCCccccCCCCCccceecC----CCCcHHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence            34456776676788999999999999999999999999999873    3454545444333333     35788888876


Q ss_pred             CC
Q psy10030         87 NT   88 (484)
Q Consensus        87 ~~   88 (484)
                      .+
T Consensus       186 ~T  187 (528)
T 3r3i_A          186 NT  187 (528)
T ss_dssp             TT
T ss_pred             ch
Confidence            43

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=98.13  E-value=6.5e-06  Score=78.37  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=37.1

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++.+||||||.|||||.+.||.++++   .|+|++++.++++..
T Consensus         7 ~~~~iIlA~G~g~R~~~~~~K~l~~i---~g~pll~~~i~~l~~   47 (236)
T 1i52_A            7 DVCAVVPAAGFGRRMQTECPKQYLSI---GNQTILEHSVHALLA   47 (236)
T ss_dssp             CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHT
T ss_pred             ceeEEEECCcCccccCCCCCcceeeE---CCEEHHHHHHHHHHh
Confidence            58899999999999997789999999   799999999888853

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=98.10  E-value=9.1e-06  Score=76.72  Aligned_cols=63  Identities=24%  Similarity=0.338  Sum_probs=41.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      ++.+||||||.|||||.+.||.+.|+   .|+|++++.++++...       .+   +.-++....+.++.+.+.+
T Consensus         4 ~~~aiIlAaG~g~R~~~~~~K~l~~i---~g~pli~~~l~~l~~~-------~~---~~~ivvv~~~~~~~~~~~~   66 (228)
T 2yc3_A            4 SVSVILLAGGQGKRMKMSMPKQYIPL---LGQPIALYSFFTFSRM-------PE---VKEIVVVCDPFFRDIFEEY   66 (228)
T ss_dssp             CEEEEEECCCCC-------CGGGSEE---TTEEHHHHHHHHHHHC-------TT---EEEEEEECCGGGHHHHHTT
T ss_pred             ceEEEEECCccccccCCCCCccEeEE---CCEEHHHHHHHHHHcC-------CC---CCeEEEEEChHHHHHHHHH
Confidence            58899999999999997789999999   8999999999888641       02   5555555565555554433

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=98.08  E-value=2.4e-05  Score=73.87  Aligned_cols=37  Identities=38%  Similarity=0.552  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      |.+||||||.|||||  .||.++++   .|+|++++.++.+.
T Consensus         1 m~aiILAgG~s~Rmg--~~K~ll~~---~G~pli~~~~~~l~   37 (208)
T 3ngw_A            1 MKVAVLVGGVGRRIG--MEKTEVML---CGKKLIEWVLEKYS   37 (208)
T ss_dssp             CEEEEECCCCCTTTT--SCGGGCEE---TTEEHHHHHHHHHT
T ss_pred             CEEEEECCCchhhCC--CCCcccEE---CCeeHHHHHHHHhc
Confidence            468999999999999  79999999   89999999988874

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=98.05  E-value=7.8e-06  Score=76.11  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++.+||||||.|||||.  ||.++++   .|+|++++.++++.
T Consensus         2 ~~~~iIlAgG~g~Rmg~--~K~l~~i---~g~pll~~~l~~l~   39 (197)
T 3d5n_A            2 NIGVIILAAGEGKRFGG--DKLLAKI---DNTPIIMRTIRIYG   39 (197)
T ss_dssp             CEEEEEECSCCTTCCCS--SGGGSBS---SSSBHHHHHHHHTT
T ss_pred             ceEEEEECCcCcccCCC--CeeeCEe---CceEHHHHHHHHHH
Confidence            47889999999999984  9999999   89999999888774

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=97.99  E-value=6e-05  Score=70.40  Aligned_cols=39  Identities=36%  Similarity=0.677  Sum_probs=35.5

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++.+||||||.||||| ..||.++++   .|+|++++.++.+.
T Consensus         6 ~~~~iILAgG~s~Rmg-~~~K~ll~i---~G~pli~~~l~~l~   44 (201)
T 1e5k_A            6 TITGVVLAGGKARRMG-GVDKGLLEL---NGKPLWQHVADALM   44 (201)
T ss_dssp             SEEEEEECCCCCSSSC-SSCGGGSEE---TTEEHHHHHHHHHH
T ss_pred             cceEEEEcCCCCCcCC-CCCCceeeE---CceeHHHHHHHHHH
Confidence            5889999999999998 579999999   89999999988875

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=97.81  E-value=2.8e-05  Score=72.55  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=34.6

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++.+||||||.|||||  .||.++|+   .|+|++++.++++.
T Consensus        14 ~~~~iILA~G~g~Rmg--~~K~ll~i---~g~pll~~~l~~l~   51 (201)
T 2e8b_A           14 VNTCYVLAGGKSKRFG--EDKLLYEI---KGKKVIERVYETAK   51 (201)
T ss_dssp             CCEEEEEEESSCCCCS--TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCccCC--CCcccceE---CceEHHHHHHHHHH
Confidence            4789999999999998  79999999   79999999988875

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=97.67  E-value=0.00011  Score=75.45  Aligned_cols=40  Identities=20%  Similarity=0.468  Sum_probs=36.7

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      ++.+||||||.|||||.+.||.+.++   .|+|++++.+++++
T Consensus         3 ki~aIILAaG~ssRmg~~~pK~ll~l---~GkPLi~~~l~~l~   42 (371)
T 1w55_A            3 EMSLIMLAAGNSTRFNTKVKKQFLRL---GNDPLWLYATKNLS   42 (371)
T ss_dssp             CEEEEEECCSCCTTTCSSSCGGGCEE---BTEEHHHHHHHHHH
T ss_pred             ccEEEEECCCCCccCCCCCCcceEEE---CCeEHHHHHHHHHH
Confidence            57899999999999997789999999   89999999988885

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=97.62  E-value=9.8e-05  Score=70.28  Aligned_cols=40  Identities=28%  Similarity=0.426  Sum_probs=32.9

Q ss_pred             CEEEEEEcCCC---CccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQ---GTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~---GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++.+||||||.   |+||| ..||.++|+   .|+|++++.++++..
T Consensus         2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i---~g~pll~~~l~~l~~   44 (232)
T 2dpw_A            2 RPSAIVLAGGKEAWAERFG-VGSKALVPY---RGRPMVEWVLEALYA   44 (232)
T ss_dssp             CCEEEEECCCBCSGGGTTT-CSBGGGSEE---TTEETHHHHHHHHHH
T ss_pred             ceeEEEECCCCCccccccC-CCCceeeEE---CCEEHHHHHHHHHHh
Confidence            46789999999   44444 369999999   899999999988864

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=97.50  E-value=3.1e-05  Score=82.51  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             HHHhhhccCCeeeeeecCCcccccCCCCCCcccccc-HHHHhhhhhhccccccccccccCCCCcccCCCCCChhhHHHHH
Q psy10030         20 LGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIK-IQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYR   98 (484)
Q Consensus        20 ~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~-~~~f~~~~~~~L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~   98 (484)
                      .|+++|+  ++||++||||||||||.+.||+|++|+ =..|+.....++.......=.++|+..+.+..+  .+...++-
T Consensus        68 ~g~~~l~--k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t--~e~t~~~f  143 (505)
T 2oeg_A           68 CDNAVLQ--STVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNT--SASTKSFL  143 (505)
T ss_dssp             CCHHHHH--TEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHH--HHHHHHHH
T ss_pred             HHHHHHh--cceEEEEcCCcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCC--HHHHHHHH
Confidence            6999999  999999999999999999999999998 111222222222221111002345555655421  23333332


Q ss_pred             -----Hhchh-----cccCCCEEEEEEcCC
Q psy10030         99 -----ELGLK-----LISRGDVAVIVLAGG  118 (484)
Q Consensus        99 -----~~G~~-----~i~~gkvavviLaGG  118 (484)
                           .-|++     .+.++++.++-..|+
T Consensus       144 ~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~  173 (505)
T 2oeg_A          144 KARYPWLYQVFDSEVELMQNQVPKILQDTL  173 (505)
T ss_dssp             HHHCHHHHTTCCCCCEEECCCEECEETTTC
T ss_pred             hhhhhccCCCccceEEEEEcCEEeEecCCC
Confidence                 24652     256777777766553

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=97.25  E-value=0.00014  Score=69.46  Aligned_cols=37  Identities=32%  Similarity=0.691  Sum_probs=27.2

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK  149 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~  149 (484)
                      ++.+||||||.|||||.+ ||.++++   .|+|++++.+++
T Consensus        25 ~~~aiILAgG~s~Rm~~~-~K~l~~i---~gkpli~~~l~~   61 (236)
T 2px7_A           25 EVSVLIPAAGNGLRLGRG-PKAFLQV---GGRTLLEWTLAA   61 (236)
T ss_dssp             CCEEEEECCC-------C-CGGGCBC---SSSBHHHHHHHH
T ss_pred             ceEEEEEcCCCCccCCCC-CCeEEEE---CCEEHHHHHHHh
Confidence            578999999999999976 9999999   899999998877

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.00014  Score=77.28  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=30.4

Q ss_pred             hhhccCCeeeeeecCCcccccCCCCCCcccccc
Q psy10030         23 KLISRGDVAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        23 ~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      ..++.+++||++||||||||||.+.||+|++|.
T Consensus        86 ~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V~  118 (488)
T 2i5k_A           86 NVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVR  118 (488)
T ss_dssp             CSTTGGGEEEEEECCCBSGGGTCCSBSTTSCCB
T ss_pred             hhhhcCCceEEEEcCCCcccCCCCCCccccccC
Confidence            466789999999999999999999999999984

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=92.19  E-value=0.068  Score=50.84  Aligned_cols=40  Identities=33%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030         28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL   67 (484)
Q Consensus        28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L   67 (484)
                      |++++++||||+|||+|.+.||.+.+++=.-++.+.+..+
T Consensus         6 ~~~~aIIlAaG~g~Rmg~~~~K~l~~l~Gkpll~~~l~~~   45 (231)
T 3q80_A            6 GEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGL   45 (231)
T ss_dssp             CCEEEEEECCCCCTTTCSSSCGGGCEETTEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCccCCCCCCceEEEECCeEHHHHHHHHH
Confidence            4788999999999999999999999884322445544433

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=90.35  E-value=0.11  Score=54.67  Aligned_cols=40  Identities=35%  Similarity=0.597  Sum_probs=29.6

Q ss_pred             cCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhc
Q psy10030         27 RGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQE   66 (484)
Q Consensus        27 ~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~   66 (484)
                      .+..||++||||+||||...-||-|.+++=.-++.+.+..
T Consensus        10 ~~~~~vvILAaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~   49 (501)
T 3st8_A           10 PGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHA   49 (501)
T ss_dssp             --CEEEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHH
T ss_pred             CCCceEEEECCcCcccCCCCCCHHHeEECChhHHHHHHHH
Confidence            4789999999999999999999999987532234554433

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=90.15  E-value=0.12  Score=49.21  Aligned_cols=26  Identities=35%  Similarity=0.690  Sum_probs=17.0

Q ss_pred             CeeeeeecCCcccccCC-CCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGA-DYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~-~~pkg~~~i   54 (484)
                      ++.+++||||+|||++. +.||.+.++
T Consensus         3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l   29 (246)
T 3f1c_A            3 LIYAQILAGGKGTRMGNVSMPKQFLPL   29 (246)
T ss_dssp             CEEEEEECC-----C-CSSCCGGGSEE
T ss_pred             ccEEEEECCccccccCCCCCCCeEEEE
Confidence            56788899999999998 889999976

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=89.67  E-value=0.15  Score=47.51  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=23.0

Q ss_pred             CCeeeeeecCCcccccCCCCCCccccc
Q psy10030         28 GDVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        28 ~~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      -+..+++||||.|||+|.+.||.+.++
T Consensus        12 ~~~~aiILAaG~s~Rm~~~~~K~l~~i   38 (234)
T 1vpa_A           12 HMNVAILLAAGKGERMSENVPKQFLEI   38 (234)
T ss_dssp             CCEEEEEEECCCCGGGCCSSCGGGCEE
T ss_pred             ccCeEEEEcCcchhhcCCCCCceEEEE
Confidence            467788899999999997789988865

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=89.46  E-value=0.14  Score=47.58  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=13.7

Q ss_pred             CCeeeeeecCCcccccCCCCCCccccc
Q psy10030         28 GDVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        28 ~~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      .++.+++||||.|||++.+.||.+.++
T Consensus         5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~   31 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFGADKPKQYVEI   31 (231)
T ss_dssp             CCEEEEEECC----------CCSCCEE
T ss_pred             CceEEEEEcccccccCCCCCCceEeEE
Confidence            456778899999999997789999876

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=89.40  E-value=0.17  Score=46.59  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=21.4

Q ss_pred             eeeeeecCCcccccCCCCCCccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      +.+++||||+|||++...||.+.++
T Consensus         3 ~~~vIlA~G~g~R~~~~~~K~l~~~   27 (223)
T 2xwl_A            3 TVAVVPAAGSGERLRAGRPKAFVTL   27 (223)
T ss_dssp             EEEEEECCCCCGGGTSSSCGGGSEE
T ss_pred             eEEEEECCccCcccCCCCCCeeeEE
Confidence            5677899999999997789998876

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=88.84  E-value=0.19  Score=47.06  Aligned_cols=26  Identities=38%  Similarity=0.617  Sum_probs=22.1

Q ss_pred             CeeeeeecCCcccccCCCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      ++.+++||||.|||+|.+.||.+.++
T Consensus         7 ~~~~iIlA~G~g~R~~~~~~K~l~~i   32 (236)
T 1i52_A            7 DVCAVVPAAGFGRRMQTECPKQYLSI   32 (236)
T ss_dssp             CEEEEEEECCCCGGGCCSSCGGGSEE
T ss_pred             ceeEEEECCcCccccCCCCCcceeeE
Confidence            46778899999999997789998876

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=88.32  E-value=0.18  Score=46.81  Aligned_cols=26  Identities=42%  Similarity=0.755  Sum_probs=15.7

Q ss_pred             CeeeeeecCCcccccCCCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      ++.+++||||.|||++.+.||.+.++
T Consensus         4 ~~~aiIlAaG~g~R~~~~~~K~l~~i   29 (228)
T 2yc3_A            4 SVSVILLAGGQGKRMKMSMPKQYIPL   29 (228)
T ss_dssp             CEEEEEECCCCC-------CGGGSEE
T ss_pred             ceEEEEECCccccccCCCCCccEeEE
Confidence            46678899999999997778988876

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=87.88  E-value=0.2  Score=47.22  Aligned_cols=25  Identities=36%  Similarity=0.717  Sum_probs=14.5

Q ss_pred             CeeeeeecCCcccccCCCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      ++.+++||||.|||++.+ ||.+.++
T Consensus        25 ~~~aiILAgG~s~Rm~~~-~K~l~~i   49 (236)
T 2px7_A           25 EVSVLIPAAGNGLRLGRG-PKAFLQV   49 (236)
T ss_dssp             CCEEEEECCC-------C-CGGGCBC
T ss_pred             ceEEEEEcCCCCccCCCC-CCeEEEE
Confidence            467788999999999976 8888865

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=87.87  E-value=0.24  Score=45.35  Aligned_cols=24  Identities=38%  Similarity=0.765  Sum_probs=20.1

Q ss_pred             eeeeeecCCcccccCCCCCCcccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      +.+++||||+|||+|.  ||.+.+++
T Consensus         3 ~~~iIlAgG~g~Rmg~--~K~l~~i~   26 (197)
T 3d5n_A            3 IGVIILAAGEGKRFGG--DKLLAKID   26 (197)
T ss_dssp             EEEEEECSCCTTCCCS--SGGGSBSS
T ss_pred             eEEEEECCcCcccCCC--CeeeCEeC
Confidence            5678899999999984  89888763

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=87.01  E-value=0.3  Score=44.95  Aligned_cols=25  Identities=28%  Similarity=0.581  Sum_probs=20.8

Q ss_pred             CeeeeeecCCcccccCCCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      ++.+++||||+|+|+| +.||.+.++
T Consensus         6 ~~~~iILAgG~s~Rmg-~~~K~ll~i   30 (201)
T 1e5k_A            6 TITGVVLAGGKARRMG-GVDKGLLEL   30 (201)
T ss_dssp             SEEEEEECCCCCSSSC-SSCGGGSEE
T ss_pred             cceEEEEcCCCCCcCC-CCCCceeeE
Confidence            4677889999999998 578888865

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=85.37  E-value=0.32  Score=43.71  Aligned_cols=37  Identities=24%  Similarity=0.450  Sum_probs=25.9

Q ss_pred             CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL   67 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L   67 (484)
                      ++.+++||||.|||+|  .||.+.+++=..++.+.+..+
T Consensus         5 ~~~~iIlA~G~~~R~g--~~K~l~~~~g~pll~~~l~~l   41 (197)
T 2wee_A            5 QITGVVLAAGRSNRLG--TPKQLLPYRDTTVLGATLDVA   41 (197)
T ss_dssp             EEEEEEEECCCCTTTS--SCGGGSEETTEEHHHHHHHHH
T ss_pred             ceEEEEECCCCcccCC--CCeEcCeeCCccHHHHHHHHH
Confidence            4667889999999997  899999874222345544333

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=85.19  E-value=0.37  Score=43.29  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=26.0

Q ss_pred             CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL   67 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L   67 (484)
                      ++.+++||||.|||+|  .||.+.+++=..++.+.+..+
T Consensus         5 ~~~~iIlA~G~~~R~g--~~K~l~~~~g~pli~~~l~~l   41 (199)
T 2waw_A            5 RVTGVVLAAGYSRRLG--TPKQLLPLGDTTLLGATLAMA   41 (199)
T ss_dssp             CEEEEEEESSCCTTTT--SCGGGCEETTEEHHHHHHHHH
T ss_pred             ceEEEEECCCCCCCCC--CCEEeCEeCccCHHHHHHHHH
Confidence            4667889999999998  799999875222345544333

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=83.60  E-value=0.38  Score=44.60  Aligned_cols=26  Identities=35%  Similarity=0.666  Sum_probs=12.3

Q ss_pred             CeeeeeecCCcccccCC-CCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGA-DYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~-~~pkg~~~i   54 (484)
                      ++.+++||||.|||++. ..||.+.++
T Consensus         2 m~~~iIlA~G~g~R~~~~~~~K~l~~i   28 (236)
T 2vsh_A            2 MIYAGILAGGTGTRMGISNLPKQFLEL   28 (236)
T ss_dssp             CEEEEEEEC-----------CGGGSEE
T ss_pred             ceEEEEeCCccccccCCCCCCCeeeee
Confidence            45678899999999985 568888765

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=83.58  E-value=0.45  Score=44.12  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=23.7

Q ss_pred             eeeeeecCCcccccCCCCCCccccccHHHHhhhhh
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGY   64 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~   64 (484)
                      +.+++||||.|||++   ||.+.+++=.-++.+.+
T Consensus         5 ~~aiIlA~G~g~R~~---~K~l~~i~gkpll~~~l   36 (228)
T 1ezi_A            5 NIAVILARQNSKGLP---LKNLRKMNGISLLGHTI   36 (228)
T ss_dssp             EEEEEECCSSCSSST---TTTTCEETTEEHHHHHH
T ss_pred             eEEEEecCCCCCCCC---CcccceeCCcCHHHHHH
Confidence            667889999999998   99999874222344444

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=81.60  E-value=0.64  Score=43.08  Aligned_cols=35  Identities=26%  Similarity=0.173  Sum_probs=24.9

Q ss_pred             eeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL   67 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L   67 (484)
                      +.++++|||.|||++   ||.+.+++=.-++.+.+..+
T Consensus         3 ~~aiIlA~G~g~R~~---~K~l~~i~g~pli~~~l~~~   37 (234)
T 2y6p_A            3 RAVIIPARLGSTRLK---EKPLKNLLGKPLIRWVVEGL   37 (234)
T ss_dssp             EEEEEECCSCCTTTT---TGGGCEETTEEHHHHHHHHH
T ss_pred             eEEEEEcCCCCCCCC---CCcceeECCEEHHHHHHHHH
Confidence            567889999999998   99999874322445544333

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=81.42  E-value=0.61  Score=43.31  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=18.6

Q ss_pred             eeeeecCCcccccCCCCCCccccc
Q psy10030         31 AVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        31 ~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      .+++||||+|+|+|  .||.+.++
T Consensus         2 ~aiILAgG~s~Rmg--~~K~ll~~   23 (208)
T 3ngw_A            2 KVAVLVGGVGRRIG--MEKTEVML   23 (208)
T ss_dssp             EEEEECCCCCTTTT--SCGGGCEE
T ss_pred             EEEEECCCchhhCC--CCCcccEE
Confidence            45678999999998  78998876

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=80.90  E-value=0.71  Score=43.96  Aligned_cols=26  Identities=38%  Similarity=0.653  Sum_probs=21.5

Q ss_pred             CeeeeeecCCcccccC---CCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLG---ADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~---~~~pkg~~~i   54 (484)
                      ++.+++||||.||||+   ...||.+.++
T Consensus        25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i   53 (254)
T 1jyk_A           25 RVKAIILAAGLGTRLRPLTENTPKALVQV   53 (254)
T ss_dssp             CCEEEEEECSCCGGGTTTTSSSCGGGCEE
T ss_pred             CceEEEECCCCcccCCcccCCCCCEEeeE
Confidence            4566779999999998   5789999876

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=80.70  E-value=0.7  Score=46.23  Aligned_cols=37  Identities=19%  Similarity=0.433  Sum_probs=25.6

Q ss_pred             eeeeecCCcccccC----CCCCCccccccH-HHHhhhhhhcc
Q psy10030         31 AVIVLAGGQGTRLG----ADYPNRIESIKI-QVYIGHGYQEL   67 (484)
Q Consensus        31 ~~~~~aggqg~~l~----~~~pkg~~~i~~-~~f~~~~~~~L   67 (484)
                      .+++||||.||||+    ..+||.+.+++= ..++.+.+..+
T Consensus         3 ~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l   44 (336)
T 2x65_A            3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERV   44 (336)
T ss_dssp             EEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHH
T ss_pred             EEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHH
Confidence            35669999999998    679999999832 22345544333

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=80.55  E-value=0.5  Score=43.26  Aligned_cols=25  Identities=36%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             CeeeeeecCCcccccCCCCCCcccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      ++.+++||||+|||+|  .||.+.+++
T Consensus        14 ~~~~iILA~G~g~Rmg--~~K~ll~i~   38 (201)
T 2e8b_A           14 VNTCYVLAGGKSKRFG--EDKLLYEIK   38 (201)
T ss_dssp             CCEEEEEEESSCCCCS--TTHHHHHHH
T ss_pred             CceEEEECCCCCccCC--CCcccceEC
Confidence            3567889999999998  789888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	484
d1jv1a_	501	c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor	1e-157
d1jv1a_	501	c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor	2e-07
d2icya2	378	c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2	3e-97
d2icya2	378	c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2	1e-05
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	7e-08
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	0.002
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	8e-08
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	0.001
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	1e-06
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	0.004
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	3e-06
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	4e-06
d2cu2a2	268	c.68.1.20 (A:1-268) Putative mannose-1-phosphate g	3e-05
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	3e-05
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	9e-05
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	4e-04
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	5e-04
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	5e-04

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

 Score =  454 bits (1168), Expect = e-157
 Identities = 200/423 (47%), Positives = 276/423 (65%), Gaps = 18/423 (4%)

Query: 79  PPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPS 138
            P  + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YPKGMY++GLPS
Sbjct: 72  VPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPS 131

Query: 139 GKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHV 197
            K+LFQIQAE+I KL ++A++ +G+ C +PW+IMTS  T   T+E+F ++ YFGL   +V
Sbjct: 132 RKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENV 191

Query: 198 IFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYC 257
           IFF+Q  +P  S  G+I+LE +++V+ +PDG+GGLY AL A  I++ M  RGI  IHVYC
Sbjct: 192 IFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYC 251

Query: 258 VDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCS 317
           VDNILVKV DP F+G+C+++GA CG KVVEK  P E +GV+C VDG +++VEYSE+   +
Sbjct: 252 VDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLAT 311

Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRP 376
             +     GRL FN G+I NH+F++  L+ +V   +  L+ H+A+KKIP +D QG   +P
Sbjct: 312 AQKRSS-DGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKP 370

Query: 377 NKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHA 435
           +KPNGIK+EKF+FD F   +  V +EV R DEFSPLKN+   +  DNP T   A+ +LH 
Sbjct: 371 DKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHH 430

Query: 436 RWIETAGGVVVADETG--------------NTVCEIAPRVSYEGEGLEERVKGKVLQTPL 481
            W+  AGG  + +                    CEI+P +SY GEGLE  V  K    PL
Sbjct: 431 CWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPL 490

Query: 482 LLE 484
           +++
Sbjct: 491 IID 493

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query: 2   CLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
            + G  T D   L  +   GL  IS+  VAV++LAGGQGTRLG  YP
Sbjct: 75  EVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYP 121

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  296 bits (758), Expect = 3e-97
 Identities = 67/322 (20%), Positives = 129/322 (40%), Gaps = 30/322 (9%)

Query: 97  YRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEI 156
            +++         + V+ L GG GT +G   PK +  +    G +   +   +I+ L   
Sbjct: 62  SQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVR--DGLTFLDLIVIQIENLNNK 119

Query: 157 AKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILL 216
                    +P  +M S  T   T +  E+     +    +  F Q   P       +  
Sbjct: 120 Y-----GCKVPLVLMNSFNTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVVADEFVPW 171

Query: 217 ET---RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGY 273
            +    D+    P GHG ++ AL  +G LDT  ++G +++ V   DN+   V D T L +
Sbjct: 172 PSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIV-DLTILKH 230

Query: 274 CVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLG 333
            ++      ++V  K       G L + +GK +++E +++ +  V E +       FN  
Sbjct: 231 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFN-- 288

Query: 334 SICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAF 392
              N + +L+ ++++V+ DA  ++     K+             +    ++LE     A 
Sbjct: 289 -TNNLWVNLKAIKKLVEADALKMEIIPNPKE------------VDGVKVLQLETAAGAAI 335

Query: 393 PLCENLVAWEVTRDEFSPLKNS 414
              +N +   V R  F P+K S
Sbjct: 336 RFFDNAIGVNVPRSRFLPVKAS 357

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 17 YRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
           +++         + V+ L GG GT +G   P
Sbjct: 62 SQDVAETKNLLDKLVVLKLNGGLGTTMGCTGP 93

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 50.8 bits (120), Expect = 7e-08
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
           V+VI+LAGGQG R+    PK    +    G+ +         ++ E+ +           
Sbjct: 5   VSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSRMPEVKEIVVVCDPFFRD 61

Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
           I             F   G    D  +    +       
Sbjct: 62  IFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDVNSEL 100

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 30 VAVIVLAGGQGTRLGADYP 48
          V+VI+LAGGQG R+    P
Sbjct: 5  VSVILLAGGQGKRMKMSMP 23

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 50.3 bits (119), Expect = 8e-08
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-- 166
           ++++I+LA G  TR      K    +G      L+    + +       K    S  +  
Sbjct: 1   EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSSFYPFKKIVVTSSNITY 57

Query: 167 -PWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209
              F    E  +              L  +  +     +    S
Sbjct: 58  MKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLVS 101

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 29 DVAVIVLAGGQGTRLGADYP 48
          ++++I+LA G  TR      
Sbjct: 1  EMSLIMLAAGNSTRFNTKVK 20

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 3/100 (3%)

Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
           DV  +V A G G R+  + PK   +IG    +++ +     +     + +          
Sbjct: 3   DVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLAHPRVKRVVIAISPGDS 59

Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
                 L + P     +            +     +    
Sbjct: 60  RFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVL 99

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 29 DVAVIVLAGGQGTRLGADYP 48
          DV  +V A G G R+  + P
Sbjct: 3  DVCAVVPAAGFGRRMQTECP 22

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
           VA++ LA G+G R+  + PK    I    G+ LF+       K   I      +    + 
Sbjct: 5   VAIL-LAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLKSEAIDGVVIVTRREWFE 60

Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSL 210
           ++   +         E            + F ++  P + L
Sbjct: 61  VVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVL 101

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 4/171 (2%)

Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFI 170
           +V++LA G+GTR+ +D PK ++ +    GK++ Q   +  ++L   A      G     +
Sbjct: 4   SVVILAAGKGTRMYSDLPKVLHTLA---GKAMVQHVIDAANEL-GAAHVHLVYGHGGDLL 59

Query: 171 MTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHG 230
             +   D             G        F         L G++ L + + + R  D   
Sbjct: 60  KQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKP 119

Query: 231 GLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
                L    + D      I   +      +  K                 
Sbjct: 120 QGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGIL 170

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 113 IVLAGGQGTRLG----ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
           +V+AGG+G RL      D PK    + L  GK+L +   E++  L+   +          
Sbjct: 6   LVMAGGRGERLWPLSREDRPKPF--LPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQE 63

Query: 169 FIM 171
            + 
Sbjct: 64  AVA 66

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEI---------AKEK 160
           +A+I  A G G R GAD PK    IG    K++ +      ++   +             
Sbjct: 5   IALI-PAAGIGVRFGADKPKQYVEIG---SKTVLEHVLGIFERHEAVDLTVVVVSPEDTF 60

Query: 161 FGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209
                  +  +        TR    RNG   L    +       +   +
Sbjct: 61  ADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDA 109

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 113 IVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
           I+LA G+GTR+ +D PK ++ +    G S+ +     +  +
Sbjct: 5   IILAAGKGTRMKSDLPKVLHKVA---GISMLEHVFRSVGAI 42

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 31/216 (14%), Positives = 56/216 (25%), Gaps = 13/216 (6%)

Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
            ++LAGG GTRL       PK M  IG   GK +       +        + F   C   
Sbjct: 5   AVILAGGLGTRLSEETIVKPKPMVEIG---GKPILWHI---MKMYSVHGIKDFIICCGYK 58

Query: 169 FIMTSE-LTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET-RDRVARSP 226
             +  E   +                        +        +G+  +   R +     
Sbjct: 59  GYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEY 118

Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
                 +      G+ D      I     +     L     P   G    Q     V+  
Sbjct: 119 VKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ--AGQVRSF 176

Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQ 322
           ++   G+   +       +  V      + + +E +
Sbjct: 177 QEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQE 212

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 37/276 (13%), Positives = 78/276 (28%), Gaps = 42/276 (15%)

Query: 109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
            V  I+L GG GTRL        K    +G              ID  +        S  
Sbjct: 11  SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRL------IDIPVSNCLN---SNI 58

Query: 166 LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARS 225
              +++T          +   +    L  A+           F               +S
Sbjct: 59  SKIYVLTQ---------FNSASLNRHLSRAYASNMGGYKNEGFVEV--------LAAQQS 101

Query: 226 PDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKV 285
           P+          A      +        ++    + L ++    F+    E  A   V  
Sbjct: 102 PENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 161

Query: 286 VEKITPGESLGVLCNVDGKHKIVEYSE----------LGNCSVFETQDQTGRLKFNLGSI 335
           +       +   L  +D + +I+E++E            + ++    D+  +    + S+
Sbjct: 162 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 221

Query: 336 CNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQG 371
             +  S + +  ++++          + IP     G
Sbjct: 222 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG 257

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
            I+LA G GTRL     + PK +  +     K L + Q   I+ L E             
Sbjct: 6   AIILAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQ---IEFLKEKGINDIIIIVGYL 59

Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
                 L ++        + Y   +  + ++  +  +   
Sbjct: 60  KEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	484
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	100.0
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	100.0
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.44
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.38
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.24
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.19
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.12
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.06
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.05
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	99.04
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	98.8
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	98.74
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	98.5
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	98.43
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	98.37
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.33
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	98.28
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	98.2
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	98.2
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	97.98
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	95.31
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	95.25
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	95.01
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	94.78
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	94.68
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	94.13
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	93.73
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	93.17
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	93.02
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	92.28
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	91.23
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	90.6
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	90.5
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	90.34
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	89.09
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	86.86
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	85.22
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	85.05

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=100.00  E-value=7.5e-108  Score=868.70  Aligned_cols=412  Identities=49%  Similarity=0.888  Sum_probs=386.4

Q ss_pred             ccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHH
Q psy10030         70 VQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK  149 (484)
Q Consensus        70 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~  149 (484)
                      ..|..++|+|+...... +.+.+++.+|+++|+++|++||||||+||||+|||||+++|||++||++++++||||+++++
T Consensus        64 ~~~~~~~p~p~~~~~~~-~~~~~~~~~~~~~G~~~i~~gkvavvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~e~  142 (501)
T d1jv1a_          64 NVDARMEPVPREVLGSA-TRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAER  142 (501)
T ss_dssp             ----CCBCCCGGGEEET-TTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHH
T ss_pred             CccccccCCChhhhccc-ccChHHHHHHHHhhHHHHhcCCEEEEEECCCccccCCCCCCceeeeeccCCCCcHHHHHHHH
Confidence            35667899887665544 33567789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCC-ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCC
Q psy10030        150 IDKLIEIAKEKFGS-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDG  228 (484)
Q Consensus       150 i~~l~~l~~~~~g~-~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G  228 (484)
                      |+++++++.+++|. +.|||+||||++||++|++||++|+|||+++++|+||+|+++||+|.+|+++++++++++|+|+|
T Consensus       143 i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~G  222 (501)
T d1jv1a_         143 ILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDG  222 (501)
T ss_dssp             HHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECC
T ss_pred             HHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCC
Confidence            99999999877665 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEE
Q psy10030        229 HGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIV  308 (484)
Q Consensus       229 ~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vv  308 (484)
                      |||+|.+|.++|+|++|.++|++|++|+|+||+|++++||.||||++.++++++++||+|++|+|++|++|+.||++++|
T Consensus       223 hG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~dg~~~vv  302 (501)
T d1jv1a_         223 NGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVV  302 (501)
T ss_dssp             GGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEE
T ss_pred             chHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccccccCHHHHHHHHhcccceeEEEEEcCCCCcccceEEEECCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhh
Q psy10030        309 EYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKF  387 (484)
Q Consensus       309 Eyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~  387 (484)
                      ||+|++++ .++..+.+|++.|++||||||||+++||+++++. ...||+|+|+|||||+|++|+.++|++|||+|||+|
T Consensus       303 Eysel~~~-~~~~~~~~g~l~f~~~Ni~~~~fsl~fl~~~~~~~~~~l~~hva~Kki~~~d~~~~~~~p~~~n~iklE~f  381 (501)
T d1jv1a_         303 EYSEISLA-TAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKF  381 (501)
T ss_dssp             CGGGSCHH-HHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECC
T ss_pred             EeccCCHH-HHhhccCCCcccccccceeheeeEHHHHHHHHHhcccCCCceEeccccCccCCCCCcccCCCCcchhHHHH
Confidence            99999999 8888888999999999999999999999999876 678999999999999999999999999999999999


Q ss_pred             hhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCC---------------
Q psy10030        388 LFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETG---------------  451 (484)
Q Consensus       388 i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~---------------  451 (484)
                      |||+|++++++++++|+|+ ||+||||+++.++.|||+||+.+|+++|++||+++|+++ .++.+               
T Consensus       382 ifD~~~~~~~~~~~~V~R~~eFaPvKN~~~~~~~dsp~ta~~~l~~~~~~wl~~aG~~~-~~~~~~~~~~~~~~~~~~~~  460 (501)
T d1jv1a_         382 VFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHF-IDENGSRLPAIPRLKDANDV  460 (501)
T ss_dssp             GGGGGGGCSSEEEEEECHHHHCCBCCSCTTSSSSSSHHHHHHHHHHHHHHHHHHTTCEE-BCTTCCBCCSSCCCCSTTCC
T ss_pred             HHHHHHhccceEEEEEchhhccccccCCCCCCCCCCHHHHHHHHHHHhHHHHHHcCCeE-ecccccccccccccccccCC
Confidence            9999999999999999998 999999998754679999999999999999999999999 44321               


Q ss_pred             CeeEEEccceeeecCCccccccCcccCCCcccC
Q psy10030        452 NTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE  484 (484)
Q Consensus       452 ~~~ieisp~vsy~gE~l~~~~~~~~~~~p~~~~  484 (484)
                      +..|||||++||+||||+++++|++|+.|+|||
T Consensus       461 ~~~~EIsp~~sy~GEgL~~~~~~~~~~~p~~l~  493 (501)
T d1jv1a_         461 PIQCEISPLISYAGEGLESYVADKEFHAPLIID  493 (501)
T ss_dssp             CCCEEECTTTCSSSCSCHHHHTTCEECSSEEEE
T ss_pred             CceEEECCcccccccCHHHhhCCCEecCceEEc
Confidence            367999999999999999999999999999986

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.44  E-value=5e-13  Score=131.30  Aligned_cols=177  Identities=19%  Similarity=0.209  Sum_probs=128.6

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l  184 (484)
                      |.-+||||||.||||.   .+.||+|+||   .|+|++++.++.+..        .|   +-- +|+|..+.++.++++|
T Consensus         1 k~KavILAgG~GtRl~plT~~~pKpllpi---~gkPiI~~~l~~l~~--------~G---i~ei~ii~~~~~~~~i~~~~   66 (292)
T d1fxoa_           1 KRKGIILAGGSGTRLHPATLAISKQLLPV---YDKPMIYYPLSTLML--------AG---IREILIISTPQDTPRFQQLL   66 (292)
T ss_dssp             CEEEEEECCCCCTTTTTHHHHSCGGGSEE---TTEETTHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHHHH
T ss_pred             CcEEEEECCCCCCcCChhhcCCCcccCEE---CCEehHHHHHHHHHH--------CC---CCEEEEEeCcCCHHHHHHHh
Confidence            3458999999999997   4899999999   999999999998853        45   655 4678888889999999


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .....||++   |.+..|..                     |.|+||++....      ++. .+-+.+++.++|++. .
T Consensus        67 ~~~~~~g~~---I~y~~q~~---------------------~~Gta~ai~~a~------~~i-~~~~~~lil~dD~~~-~  114 (292)
T d1fxoa_          67 GDGSNWGLD---LQYAVQPS---------------------PDGLAQAFLIGE------SFI-GNDLSALVLGDNLYY-G  114 (292)
T ss_dssp             TTSGGGTCE---EEEEECSS---------------------CCCGGGHHHHTH------HHH-TTSEEEEEETTEEEE-C
T ss_pred             ccccccCeE---EEEccCCC---------------------CCcHHHHHHhhh------hhc-CCCceEEEEcccccc-C
Confidence            887778854   76666654                     899999998654      333 234555666666653 3


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEE-ECCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN-VDGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL  342 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~-~~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l  342 (484)
                      ..-..++.+|.++++.+++-+.+..+| ++.|++.. .+|+. .++|   -|.+ -          .=+.+++..++|+-
T Consensus       115 ~dl~~ll~~h~~~~~~~~i~~~~V~~p-~~yGV~~~d~~~ki~~~~E---KP~~-p----------~Snla~~G~Y~f~~  179 (292)
T d1fxoa_         115 HDFHELLGSASQRQTGASVFAYHVLDP-ERYGVVEFDQGGKAISLEE---KPLE-P----------KSNYAVTGLYFYDQ  179 (292)
T ss_dssp             TTHHHHHHHHHTCCSSEEEEEEECSCG-GGSEEEEECTTSCEEEEEE---SCSS-C----------SSSEEEEEEEEECT
T ss_pred             cCHHHHHHHHHhCCCCcEEEEEECCCH-HHCeEEEEcCCCCEeEEEE---CCCC-C----------CCCcEEEEEEEECh
Confidence            333568999999999888877777666 68999975 35563 3444   3332 1          11468888999986


Q ss_pred             HHHH
Q psy10030        343 ECLQ  346 (484)
Q Consensus       343 ~~l~  346 (484)
                      +.++
T Consensus       180 ~~~~  183 (292)
T d1fxoa_         180 QVVD  183 (292)
T ss_dssp             THHH
T ss_pred             HHHH
Confidence            5543

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.3e-12  Score=128.14  Aligned_cols=180  Identities=21%  Similarity=0.218  Sum_probs=128.2

Q ss_pred             EEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEE-EEeCCCCchHHHHHHH
Q psy10030        110 VAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF-IMTSELTDRPTREYFE  185 (484)
Q Consensus       110 vavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~-iMtS~~t~e~t~~~l~  185 (484)
                      |-+|+||||.||||.   ...||+|+||   .++|++++.++.+..        .|   |--+ |.|+.+..+.++++|.
T Consensus         2 MkaiIlagG~GtRl~p~t~~~pK~llpi---~~kp~i~~~l~~l~~--------~g---i~~i~iv~~~~~~~~~~~~~~   67 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPITRGVSKQLLPI---YDKPMIYYPLSVLML--------AG---IREILIITTPEDKGYFQRLLG   67 (291)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEE---TTEETTHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHHHHT
T ss_pred             ccEEEECCcCccccchhhcCCCccccEE---CCEehHHHHHHHHHH--------cC---CCEEEEEeCcccHHHHHHHhC
Confidence            458999999999997   6899999999   899999999988853        45   5554 5566666667889998


Q ss_pred             HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030        186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV  265 (484)
Q Consensus       186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~  265 (484)
                      +...||++   |.+..|+.                     |.|+||++....      ++.  +-+.++++..||++...
T Consensus        68 ~g~~~gi~---I~y~~Q~~---------------------plGta~Ai~~a~------~fi--~~~~~~lvlgddi~~~~  115 (291)
T d1mc3a_          68 DGSEFGIQ---LEYAEQPS---------------------PDGLAQAFIIGE------TFL--NGEPSCLVLGDNIFFGQ  115 (291)
T ss_dssp             TSGGGTCE---EEEEECSS---------------------CCCSTHHHHHTH------HHH--TTSCEEEEETTEEEECS
T ss_pred             chHhhCcE---EEEEECCC---------------------CCchHHHHHHHH------HHh--CCCCeEEEECCCcccCc
Confidence            87778854   77666655                     899999997643      333  23434445555554444


Q ss_pred             CCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        266 GDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       266 ~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      .-..++-+|.+++.++++-+.+..+| +++|++...+ .-.++..-|-|.. -          .=+.+|+..++|+-+.+
T Consensus       116 ~~~~~l~~~~~~~~~atI~~~~V~dP-~~yGVve~d~-~g~i~~i~EKP~~-p----------~Sn~a~~GiY~f~~~v~  182 (291)
T d1mc3a_         116 GFSPKLRHVAARTEGATVFGYQVMDP-ERFGVVEFDD-NFRAISLEEKPKQ-P----------KSNWAVTGLYFYDSKVV  182 (291)
T ss_dssp             SCHHHHHHHTTCCSSEEEEEEECSCC-SSSBBCEEET-TEEEEECCBSCSS-C----------SCSEEEEEEEECCTHHH
T ss_pred             CHHHHHHHHHhCcCCcEEEEEECCCc-ccCCCceecc-CcceeEEEECCCC-C----------CCCeEEEEEEEeChHHH
Confidence            45668888888888888888888777 5889987653 2234555555543 1          11467899999987666


Q ss_pred             HHH
Q psy10030        346 QRM  348 (484)
Q Consensus       346 ~~~  348 (484)
                      +.+
T Consensus       183 ~~~  185 (291)
T d1mc3a_         183 EYA  185 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.24  E-value=3.6e-11  Score=117.52  Aligned_cols=177  Identities=17%  Similarity=0.142  Sum_probs=117.2

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l  184 (484)
                      .|-+||||||.||||+   .+.||+|+||   .++|+++++++++..        +|   +- .+|.|.....+.+.+++
T Consensus         3 ~MkavIlagG~GtRl~p~t~~~PK~ll~i---~~kpii~~~l~~l~~--------~g---~~~i~Iv~~~~~~~~~~~~~   68 (295)
T d1lvwa_           3 HMKGIVLAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSVLML--------AG---IRDILIISTPRDLPLYRDLL   68 (295)
T ss_dssp             SCEEEEECCCCCSTTTTTTTSSCGGGSEE---TTEETTHHHHHHHHH--------TT---CCEEEEEECTTTHHHHHHHH
T ss_pred             CcEEEEECCCCcccCCcccCCCCcccCeE---CCEEHHHHHHHHHHH--------CC---CCeEEEEeCcccHHHHHHHh
Confidence            4668999999999997   5899999999   899999999998853        45   33 45566666667888888


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .+...++.   ++.+..|+                     .|.|+|+++.....      .. ..-+.++|+++|.+ ..
T Consensus        69 ~~~~~~~~---~i~~v~e~---------------------~~~gta~Al~~a~~------~l-~~~~~~li~~~d~~-~~  116 (295)
T d1lvwa_          69 GDGSQFGV---RFSYRVQE---------------------EPRGIADAFIVGKD------FI-GDSKVALVLGDNVF-YG  116 (295)
T ss_dssp             TTSGGGTS---EEEEEECS---------------------SCCCGGGHHHHTHH------HH-TTSCEEEEETTCCE-EC
T ss_pred             ccchhcCC---EEEEEECC---------------------CCCCHHHHHHHHHH------Hc-CCCCEEEEeCCcce-ec
Confidence            77655664   35444444                     47899998865432      22 22355666666654 33


Q ss_pred             cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ..-..++-.+...+.++++-+++..+| +..|++... +|+  |+++.|-|.. ..          =++.|.++++|+-+
T Consensus       117 ~~~~~~~~~~~~~~~~~ti~~~~~~~~-~~yG~i~~~~~~~--v~~~~EKp~~-~~----------s~~~~~Giy~~n~~  182 (295)
T d1lvwa_         117 HRFSEILRRAASLEDGAVIFGYYVRDP-RPFGVVEFDSEGR--VISIEEKPSR-PK----------SNYVVPGLYFYDNQ  182 (295)
T ss_dssp             TTHHHHHHHHHTCCSSEEEEEEECSCC-TTSEEEEECTTSB--EEEEEESCSS-CS----------CSEECCSEEEECTT
T ss_pred             hhHHHHHHHHHhCCCCeEEEEEEcCCC-ccccEEEECCCCc--EEEEeecccC-cc----------cceeecceEEECHH
Confidence            322334556677788888888877765 478998654 444  4455554433 10          02567778888765


Q ss_pred             HH
Q psy10030        344 CL  345 (484)
Q Consensus       344 ~l  345 (484)
                      .+
T Consensus       183 if  184 (295)
T d1lvwa_         183 VV  184 (295)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.1e-10  Score=106.92  Aligned_cols=177  Identities=17%  Similarity=0.199  Sum_probs=111.8

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      -|.|||||||.||||+.+.||+|+||   .|+|+++++++.+..        +|   +.-+++..++..+...+++.++ 
T Consensus         2 ~MkvIILAAG~GtRm~~~~PKpli~i---~gkpiie~~i~~l~~--------~~---~~~iiiv~~~~~~~~~~~~~~~-   66 (248)
T d2oi6a2           2 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKAMVQHVIDAANE--------LG---AAHVHLVYGHGGDLLKQALKDD-   66 (248)
T ss_dssp             CEEEEEECCSCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHH--------HT---CSCEEEEESSCHHHHHHHCCCT-
T ss_pred             CceEEEECCCCCCCCCCCCCeeeEEE---CChhHHHHHHHHHHH--------cC---CcEEEeccCcccceeeeecccc-
Confidence            47899999999999999999999999   899999999998854        34   6667777788777766554321 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                          .   ....                     ....|.|+++.+..+...      + ..-..+++.+.|...   .++
T Consensus        67 ----~---~~~~---------------------~~~~~~g~~~~~~~~~~~------i-~~~~~~~i~~~d~~~---~~~  108 (248)
T d2oi6a2          67 ----N---LNWV---------------------LQAEQLGTGHAMQQAAPF------F-ADDEDILMLYGDVPL---ISV  108 (248)
T ss_dssp             ----T---EEEE---------------------ECSSCCCHHHHHHHHGGG------S-CTTSEEEEEETTCTT---CCH
T ss_pred             ----c---cccc---------------------ccccCcccHHHHHhhhhh------h-ccccceeeecCcccc---ccc
Confidence                1   1111                     234478888877765442      1 124567777777663   456


Q ss_pred             HHHHHHH--HcCCceEEEEEEccCCCcccceEEEECCeEE-EEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030        269 TFLGYCV--EQGAHCGVKVVEKITPGESLGVLCNVDGKHK-IVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL  345 (484)
Q Consensus       269 ~~lg~~~--~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~-vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l  345 (484)
                      ..+....  ......++..++..+| .+.+.++..+|+.. +++-......          .......+++.+.|+.+.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l  177 (248)
T d2oi6a2         109 ETLQRLRDAKPQGGIGLLTVKLDDP-TGYGRITRENGKVTGIVEHKDATDE----------QRQIQEINTGILIANGADM  177 (248)
T ss_dssp             HHHHHHHHHCCTTSEEEEEEECSCC-TTSCEEEEETTEEEEEECGGGCCTT----------GGGCCEEEEEEEEEEHHHH
T ss_pred             hhHHHHHHHhhccccceeEEEecCC-ccccccccccCccceeeeccCCChh----------hhhhhhhhhhhhccchHHH
Confidence            6555443  3445555555655555 45677777766643 2222111111          1122244566678888777


Q ss_pred             HHHh
Q psy10030        346 QRMV  349 (484)
Q Consensus       346 ~~~~  349 (484)
                      .+..
T Consensus       178 ~~~l  181 (248)
T d2oi6a2         178 KRWL  181 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.12  E-value=6.7e-10  Score=103.08  Aligned_cols=179  Identities=15%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG  191 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg  191 (484)
                      +||||||.||||+.+.||+|++|   .|+|++++.++++.+        .|   +--++..+.+..+....++...    
T Consensus         4 AIIlAaG~GtRl~~~~PK~L~~i---~Gkpli~~~l~~l~~--------~~---~~~iivv~~~~~~~~~~~~~~~----   65 (250)
T d1g97a2           4 AIILAAGKGTRMKSDLPKVLHKV---AGISMLEHVFRSVGA--------IQ---PEKTVTVVGHKAELVEEVLAGQ----   65 (250)
T ss_dssp             EEEECCCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHGG--------GC---CSEEEEEECTTHHHHHHHTTTT----
T ss_pred             EEEECCCCCCCCCCCCCceeeEE---CCeeHHHHHHHHHHH--------cC---CCeEEEecccccchhhhhcccc----
Confidence            56899999999999999999999   899999999999864        34   6666666677666655554321    


Q ss_pred             CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-HHH
Q psy10030        192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-PTF  270 (484)
Q Consensus       192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-p~~  270 (484)
                           +.                     ..+...|.|+++......     ..+ .....+++++..|-.+....+ -.+
T Consensus        66 -----~~---------------------~~~~~~~~g~~~~~~~a~-----~~l-~~~~~~~~~i~~~~~~~~~~~l~~l  113 (250)
T d1g97a2          66 -----TE---------------------FVTQSEQLGTGHAVMMTE-----PIL-EGLSGHTLVIAGDTPLITGESLKNL  113 (250)
T ss_dssp             -----SE---------------------EEECSSCCCHHHHHHTTH-----HHH-TTCCSEEEEEETTCTTCCHHHHHHH
T ss_pred             -----cc---------------------ccccccccccchHHHHHH-----Hhh-hcccCcceEEecCCCccCHHHHHHH
Confidence                 11                     112334566666544322     233 333445555554444322111 115


Q ss_pred             HHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030        271 LGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV  349 (484)
Q Consensus       271 lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~  349 (484)
                      +.++...+..+++.+.+...+ ...|.+...+. ..++.+.+-++. ....      ...+..+++.++|+-..+.+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~v~~~~~~~~~-~~~~------~~~~~~~~g~y~f~~~~l~~~l  183 (250)
T d1g97a2         114 IDFHINHKNVATILTAETDNP-FGYGRIVRNDN-AEVLRIVEQKDA-TDFE------KQIKEINTGTYVFDNERLFEAL  183 (250)
T ss_dssp             HHHHHHTTCSEEEEEEECSCC-TTSCEEEECTT-CCEEEEECGGGC-CHHH------HTCCEEEEEEEEEEHHHHHHHH
T ss_pred             HHHHhhhccccccccceeccc-CCCceEEEeec-eEEEEeeccccc-cccc------cccceeeeeeeecchHHHHHHH
Confidence            667778888888888877654 45566554332 223333332222 1000      1223567778899888776655

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.06  E-value=5.7e-10  Score=108.03  Aligned_cols=206  Identities=13%  Similarity=0.151  Sum_probs=120.5

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      +|-+||||||.||||+   .+.||+|+||   .|+ |+++++++++.+        .|   |--+++...+..+.+.++|
T Consensus        11 ~~~AIILAaG~GtRL~plT~~~PK~llpv---~g~~plI~~~l~~l~~--------~g---i~~I~Iv~~~~~~~i~~~l   76 (307)
T d1yp2a2          11 SVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN--------SN---ISKIYVLTQFNSASLNRHL   76 (307)
T ss_dssp             HEEEEEC------CCTTTTTTSCGGGCEE---TTTEETTHHHHHHHHH--------TT---CCEEEEEESCCCHHHHHHH
T ss_pred             ceEEEEECCCCcccCChhhcCCCcceEEE---CCCCCHHHHHHHHHHH--------cC---CCEEEEEeccccccchhhh
Confidence            5888999999999998   5899999999   665 899999998853        45   6677777788888999999


Q ss_pred             HHcCCCCCCC---Cc--EEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCC
Q psy10030        185 ERNGYFGLDP---AH--VIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVD  259 (484)
Q Consensus       185 ~~~~~fgl~~---~~--v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vD  259 (484)
                      .+.....+..   ..  ..++.|.               ...-...+.|+++.....     ++.+.+...+.++|+++|
T Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~g~~~ai~~~-----~~~i~~~~~~~~iv~~~D  136 (307)
T d1yp2a2          77 SRAYASNMGGYKNEGFVEVLAAQQ---------------SPENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGD  136 (307)
T ss_dssp             HHHCC--------CCEEEEEESCS---------------STTSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSC
T ss_pred             hcccccccccccccccceeeceee---------------eccccccccchhHHHHHh-----HHhhhccccceEEEecCc
Confidence            7753222210   00  1111111               111123356777766533     234444556889999999


Q ss_pred             CCccccCCHHHHHHHHHcCCceEEEEEEccC-CCcccceEEEECCeEEEEEeccCCcccccccccCC----------Ccc
Q psy10030        260 NILVKVGDPTFLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQT----------GRL  328 (484)
Q Consensus       260 N~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~----------g~~  328 (484)
                      ++. ......++-.|..++.++.+.+..... ...+.|++...+ .-++..|.|-+..........+          ...
T Consensus       137 ~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~-~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~  214 (307)
T d1yp2a2         137 HLY-RMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKE  214 (307)
T ss_dssp             EEC-CCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECT-TSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHH
T ss_pred             cee-ccchhhhhhhhhhccccceEEEEecccccccccceEEECC-CCcEEEEEECCCCcccccccccccccccccchhhc
Confidence            985 455566788888888888766655432 224678776432 2234455554432111111110          001


Q ss_pred             cccccceeeeeecHHHHHHHhh
Q psy10030        329 KFNLGSICNHYFSLECLQRMVK  350 (484)
Q Consensus       329 ~f~~~Ni~~~~~~l~~l~~~~~  350 (484)
                      .-...|..++.|+-+++.++.+
T Consensus       215 ~~~~~~~giyi~~~~~l~~~~~  236 (307)
T d1yp2a2         215 MPFIASMGIYVISKDVMLNLLR  236 (307)
T ss_dssp             CCEEEEEEEEEEEHHHHHHHHH
T ss_pred             ccchhhCceEEECHHHHHHHhh
Confidence            1235677788898888777653

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=4.9e-10  Score=108.03  Aligned_cols=188  Identities=15%  Similarity=0.168  Sum_probs=113.2

Q ss_pred             CEEEEEEcCCCCccc----cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF  184 (484)
Q Consensus       109 kvavviLaGG~GTRL----G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l  184 (484)
                      |+-+||||||.||||    ..+.||.++||  ..++|+||+.++|+..+       .+   +-.+++...+.++.+    
T Consensus         2 Ki~aVILAGG~GtRL~PlS~~~~PK~ll~i--~g~k~ll~~~i~rl~~~-------~~---~~~i~i~~~~~~~~~----   65 (268)
T d2cu2a2           2 KTYALVMAGGRGERLWPLSREDRPKPFLPL--FEGKTLLEATLERLAPL-------VP---PERTLLAVRRDQEAV----   65 (268)
T ss_dssp             CEEEEEECCCCCGGGTTTCBTTBCGGGCBC--GGGCBHHHHHHHHHTTT-------SC---GGGEEEEEEGGGHHH----
T ss_pred             CceEEEecCCCcccCCCcccCCCCceeeec--CCCCCHHHHHHHHhhCc-------CC---ccchhhhhhHHHHHH----
Confidence            566899999999999    56789999997  34799999998887432       12   222333444444433    


Q ss_pred             HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030        185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK  264 (484)
Q Consensus       185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~  264 (484)
                      .++  ++.. .++                       .++..|.|+|+......     ..+.+.+-+.++|+++|+++. 
T Consensus        66 ~~~--~~~~-~~i-----------------------i~E~~~~~t~~a~~~~~-----~~~~~~~~~~vlvl~~D~~~~-  113 (268)
T d2cu2a2          66 ARP--YADG-IRL-----------------------LLEPLGRDTAGAVLLGV-----AEALKEGAERLLVLPADHYVG-  113 (268)
T ss_dssp             HGG--GCSS-SEE-----------------------EEESSCCHHHHHHHHHH-----HHHHHHTCSEEEEEESSCEES-
T ss_pred             hhh--hccc-cce-----------------------eeeeecCCcccchhhHH-----HHHhccCCceeEEEecchhhc-
Confidence            333  2211 111                       12344667766554321     234446788999999999852 


Q ss_pred             cCCHHHH---H--HH-HHcCCceEEEEEEccCCCcccceEEEE---CCeEEEEEeccCCcccccccccCCCcccccccce
Q psy10030        265 VGDPTFL---G--YC-VEQGAHCGVKVVEKITPGESLGVLCNV---DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSI  335 (484)
Q Consensus       265 ~~Dp~~l---g--~~-~~~~~~~~~~vv~k~~~~e~~G~l~~~---~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni  335 (484)
                       .|-.+.   -  .. .+++..+++-+.+ ..+...+|++...   +...+|..+.|-|++..++.....|    ...|+
T Consensus       114 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~----~~~N~  187 (268)
T d2cu2a2         114 -DDEAYREALATMLEAAEEGFVVALGLRP-TRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKG----YVWNG  187 (268)
T ss_dssp             -CHHHHHHHHHHHHHHCCTTCEEEEEECC-SSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTT----CEEEE
T ss_pred             -ccHHHHHHHHHHHHHHhcCCeEeeeccc-cccccccceEEeccccccchhhheeecccchhhhhhhhccC----cccch
Confidence             232221   1  11 2345555554444 4466788988753   3345777888887763333222211    25789


Q ss_pred             eeeeecHHHHHHHhh
Q psy10030        336 CNHYFSLECLQRMVK  350 (484)
Q Consensus       336 ~~~~~~l~~l~~~~~  350 (484)
                      .+++|+.+.|.+..+
T Consensus       188 Giy~f~~~~l~~~~~  202 (268)
T d2cu2a2         188 GVFAFAPATMAELFR  202 (268)
T ss_dssp             EEEEECHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHH
Confidence            999999997766554

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=99.04  E-value=2.9e-11  Score=126.36  Aligned_cols=103  Identities=28%  Similarity=0.455  Sum_probs=74.6

Q ss_pred             ChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----------ccC
Q psy10030         10 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----------QVF   78 (484)
Q Consensus        10 ~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----------~p~   78 (484)
                      +++...+|++.|+++|++|||||++||||||||||.++|||+++|+++  .++++.++...+..++           .++
T Consensus        83 ~~~~~~~~~~~G~~~i~~gkvavvllaGG~GTRLG~~~pK~~~~v~~~--~~ksllql~~e~i~~l~~~a~~~~~~~~~i  160 (501)
T d1jv1a_          83 DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLP--SRKTLFQIQAERILKLQQVAEKYYGNKCII  160 (501)
T ss_dssp             TGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCT--TCCCHHHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred             ChHHHHHHHHhhHHHHhcCCEEEEEECCCccccCCCCCCceeeeeccC--CCCcHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            567789999999999999999999999999999999999999999886  4565555544333332           257


Q ss_pred             CCCcccCCCCCChhhHHHHHHh---chh-----cccCCCEEEEEE
Q psy10030         79 PPNCLSGVNTVDASTLGKYREL---GLK-----LISRGDVAVIVL  115 (484)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~---G~~-----~i~~gkvavviL  115 (484)
                      |+..|.|..+ ..+...-+++.   |++     .+.++++.++-.
T Consensus       161 Pl~IMtS~~T-~~~t~~~l~~~~~FGl~~~~v~~f~Q~~~P~~~~  204 (501)
T d1jv1a_         161 PWYIMTSGRT-MESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSF  204 (501)
T ss_dssp             CEEEEECTTT-HHHHHHHHHHTGGGGSCGGGEEEEECCEEECEET
T ss_pred             eEEEECChhH-hHHHHHHHHhccccCCCcCceEEEEecCcceECC
Confidence            8888888754 22233334433   443     356677776643

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.80  E-value=9.9e-09  Score=95.62  Aligned_cols=166  Identities=19%  Similarity=0.207  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030        111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN  187 (484)
Q Consensus       111 avviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~  187 (484)
                      -+||||||.||||+   .+.||+|+||   .|+|+++++++.+.+        .|   +.-+++..++..+.+.++|.+.
T Consensus         4 kAiILAAG~GtRl~~lT~~~PK~Ll~i---~gkplI~~~i~~l~~--------~g---i~~i~iv~gy~~~~i~~~~~~~   69 (259)
T d1tzfa_           4 KAVILAGGLGTRLSEETIVKPKPMVEI---GGKPILWHIMKMYSV--------HG---IKDFIICCGYKGYVIKEYFANY   69 (259)
T ss_dssp             EEEEEECSCC--------CCCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCEEEEEECTTHHHHHHHHHTH
T ss_pred             eEEEECCCccccCChhhCCCCccceEE---CCEEHHHHHHHHHHH--------cC---CCeeeeccchhHHHHHHHHhcc
Confidence            48999999999998   6899999999   899999999998864        45   8888888999999999999865


Q ss_pred             CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030        188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D  267 (484)
                      ..+...   +........-................+..+.+++|....+...       ...-+.+++.++|++. ....
T Consensus        70 ~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~-~~~~  138 (259)
T d1tzfa_          70 FLHMSD---VTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEY-------VKDDEAFLFTYGDGVA-DLDI  138 (259)
T ss_dssp             HHHHSC---EEEEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGG-------TTTSSCEEEEETTEEE-CCCH
T ss_pred             hhcccc---ccchhccccchhhhccccccceeEEeccccccccchhhhhhhh-------ccCCCceEEecccccc-ccch
Confidence            433211   1111111110000000000000011223466777766655432       1234668899999874 3334


Q ss_pred             HHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCe
Q psy10030        268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGK  304 (484)
Q Consensus       268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~  304 (484)
                      ..++.++......++...+.   +..+.|.+....++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  172 (259)
T d1tzfa_         139 KATIDFHKAHGKKATLTATF---PPGRFGALDIQAGQ  172 (259)
T ss_dssp             HHHHHHHHHHCCSEEEEEEC---CCCCSEEEEEETTE
T ss_pred             hhhhhhhcccccceeecccc---ccccCCceecccce
Confidence            44667777777777765553   33456766666554

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.74  E-value=2.4e-08  Score=91.73  Aligned_cols=64  Identities=28%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE  185 (484)
Q Consensus       109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~  185 (484)
                      |+-+||||||.||||+   .+.||+|+||   .|+|+++++++.+.+        .|   +--++++.++..+.+..+.+
T Consensus         3 ~mkaiIlaaG~GtRl~p~t~~~pK~ll~i---~gkpli~~~i~~l~~--------~g---~~~i~iv~g~~~e~i~~~~~   68 (229)
T d1jyka_           3 RVKAIILAAGLGTRLRPLTENTPKALVQV---NQKPLIEYQIEFLKE--------KG---INDIIIIVGYLKEQFDYLKE   68 (229)
T ss_dssp             CCEEEEEECSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH--------TT---CCCEEEEECTTGGGGTHHHH
T ss_pred             ceeEEEECCCCcccCCccccCCCcceeEE---CCEEHHHHHHHHHHH--------hC---Ccccccccccchhhhhhhhh
Confidence            5779999999999998   4789999999   899999999998853        34   33345555677777765554


Q ss_pred             H
Q psy10030        186 R  186 (484)
Q Consensus       186 ~  186 (484)
                      +
T Consensus        69 ~   69 (229)
T d1jyka_          69 K   69 (229)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=9.4e-08  Score=87.98  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=38.1

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      ++++||||||.||||+.+.||.+.+|   .|+|++++.++.+.+
T Consensus         3 ~i~AIILAaG~gtRm~~~~pK~L~~i---~gkplI~~~i~~~~~   43 (225)
T d1i52a_           3 DVCAVVPAAGFGRRMQTECPKQYLSI---GNQTILEHSVHALLA   43 (225)
T ss_dssp             CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHT
T ss_pred             CEEEEEeCCCcceeCCCCCCcceeEE---CCEEHHHHHHHHHHh
Confidence            68999999999999999999999999   999999999888853

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=98.43  E-value=1.6e-07  Score=87.18  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=38.5

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCc
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTD  177 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~  177 (484)
                      .+++|+||||.|||||.+.||.++++   .|+|++++.++.+.+.          ..+-.+++.....+
T Consensus         4 ~i~~IIlAaG~GtRm~~~~pK~l~~l---~Gkpli~~~l~~~~~~----------~~~~~Iivv~~~~~   59 (226)
T d1w77a1           4 SVSVILLAGGQGKRMKMSMPKQYIPL---LGQPIALYSFFTFSRM----------PEVKEIVVVCDPFF   59 (226)
T ss_dssp             CEEEEEECCC-------CCCTTTSEE---TTEEHHHHHHHHHHTC----------TTEEEEEEECCGGG
T ss_pred             ceEEEEeCCccCccCcCCCCceeeEE---CCeeHHHHHHHHHHhh----------ccccceeeccchhh
Confidence            58999999999999999999999999   9999999998887532          13566666655433

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=7.7e-07  Score=81.91  Aligned_cols=114  Identities=17%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030        112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG  191 (484)
Q Consensus       112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg  191 (484)
                      +||||||.|||||.+.||.+++|   .|+|++++.++.+.+.        +  .+..++.++.   +....++++..+..
T Consensus         6 AIILAaG~gtRm~~~~pK~l~~i---~gkpli~~~i~~~~~~--------~--~~~~Iivv~~---~~~~~~~~~~~~~~   69 (221)
T d1vpaa_           6 AILLAAGKGERMSENVPKQFLEI---EGRMLFEYPLSTFLKS--------E--AIDGVVIVTR---REWFEVVEKRVFHE   69 (221)
T ss_dssp             EEEEECCCCGGGCCSSCGGGCEE---TTEETTHHHHHHHHHC--------T--TCSEEEEEEC---GGGHHHHHTTCCCT
T ss_pred             EEEccCcCcccCCCCCCcceeEE---CCEEHHHHHHHHHHhc--------c--ccccceEEec---chhhhHHHhhhccc
Confidence            47899999999999999999999   8999999999988642        1  2455555543   33344555432211


Q ss_pred             CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHH
Q psy10030        192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFL  271 (484)
Q Consensus       192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~l  271 (484)
                         ..+.+..++.                      ..+++++.+      +..+...+.++++++.+|.++   .++..+
T Consensus        70 ---~~~~~~~~~~----------------------~~~~s~~~~------~~~~~~~~~~~v~~~~~d~p~---~~~~~i  115 (221)
T d1vpaa_          70 ---KVLGIVEGGD----------------------TRSQSVRSA------LEFLEKFSPSYVLVHDSARPF---LRKKHV  115 (221)
T ss_dssp             ---TEEEEEECCS----------------------SHHHHHHHH------HHHHGGGCCSEEEEEETTSCC---CCHHHH
T ss_pred             ---cccccccccc----------------------cccchHHHH------HHHHHhcCCCcEEEecccccc---ccHHHH
Confidence               2222111111                      111223332      234455678999999999997   356655


Q ss_pred             HHHH
Q psy10030        272 GYCV  275 (484)
Q Consensus       272 g~~~  275 (484)
                      .-.+
T Consensus       116 ~~li  119 (221)
T d1vpaa_         116 SEVL  119 (221)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            5443

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=2.3e-08  Score=100.69  Aligned_cols=97  Identities=16%  Similarity=0.221  Sum_probs=61.9

Q ss_pred             HHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccc-----cccCCCCcccCCCCCCh
Q psy10030         17 YRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSE-----VQVFPPNCLSGVNTVDA   91 (484)
Q Consensus        17 ~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~-----~~p~~~~~~~~~~~~~~   91 (484)
                      +.+.|...+..+||||++||||||||||.++|||+++++    .++++.++...+...     =.++|+..|.+..+ ..
T Consensus        62 ~~~~~~~~~~l~kvavv~LaGG~GTRLG~~~pK~~~~v~----~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T-~~  136 (378)
T d2icya2          62 SQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVR----DGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNT-HD  136 (378)
T ss_dssp             CSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGGGSEEE----TTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTT-HH
T ss_pred             cccchhHHHHhCCEEEEEecCCcccccCCCCCceeeEeC----CCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCC-hH
Confidence            344577777889999999999999999999999999986    134343443322222     14578888888654 23


Q ss_pred             hhHHHHHHhc-----hhcccCCCEEEEEEcCC
Q psy10030         92 STLGKYRELG-----LKLISRGDVAVIVLAGG  118 (484)
Q Consensus        92 ~~~~~~~~~G-----~~~i~~gkvavviLaGG  118 (484)
                      +....+++.+     ...+.++++..+.-.|+
T Consensus       137 ~t~~~l~~~~~fg~~i~~f~Q~~~P~~~~~~~  168 (378)
T d2icya2         137 DTHKIVEKYTNSNVDIHTFNQSKYPRVVADEF  168 (378)
T ss_dssp             HHHHHHGGGTTSSSCEEEEECCCEECEETTTT
T ss_pred             HHHHHHHHhccCCCceEEEEecccccccCCcc
Confidence            3334444332     22335666666654433

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=98.28  E-value=2e-06  Score=79.37  Aligned_cols=42  Identities=26%  Similarity=0.443  Sum_probs=28.5

Q ss_pred             CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      .|..+||||||.|||||.+.||.+++|   .|+|++++.++.+++
T Consensus         2 ~K~iAIIlAaG~gtRm~~~~pK~l~~i---~gkpli~~~i~~~~~   43 (226)
T d1vgwa_           2 RKNIALIPAAGIGVRFGADKPKQYVEI---GSKTVLEHVLGIFER   43 (226)
T ss_dssp             CCEEEEEECC----------CCSCCEE---TTEEHHHHHHHHHHT
T ss_pred             CceEEEEeCCCCcccCCcCCCeeeeEE---CCEEHHHHHHHHHHh
Confidence            477789999999999999999999999   899999999998864

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=98.20  E-value=5.5e-06  Score=76.05  Aligned_cols=121  Identities=17%  Similarity=0.269  Sum_probs=75.3

Q ss_pred             EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      +++|+||||.|||||.+.||.++++   .|+|++++.++.+..        +.  .+-.+++.+..     ..++++   
T Consensus         2 is~IILAaG~g~Rmg~~~pK~~~~i---~gkpii~~~l~~~~~--------~~--~~~~Ivvv~~~-----~~~~~~---   60 (205)
T d1w55a1           2 MSLIMLAAGNSTRFNTKVKKQFLRL---GNDPLWLYATKNLSS--------FY--PFKKIVVTSSN-----ITYMKK---   60 (205)
T ss_dssp             EEEEEECCSCCTTTCSSSCGGGCEE---BTEEHHHHHHHHHHT--------TS--CCSCEEEEESC-----HHHHHT---
T ss_pred             eEEEEeCCccCeeCCcCCCceeEEE---CCEEHHHHHHHHHHh--------hc--ccccccccccc-----cccccc---
Confidence            6899999999999999999999999   999999998887753        11  23334444332     123332   


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT  269 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~  269 (484)
                      +.   .++                         .....|..-...      ++..|.....++++|+.+|.++   .++.
T Consensus        61 ~~---~~~-------------------------~~v~Gg~~r~~S------v~~gl~~~~~~~VlIhd~~rP~---i~~~  103 (205)
T d1w55a1          61 FT---KNY-------------------------EFIEGGDTRAES------LKKALELIDSEFVMVSDVARVL---VSKN  103 (205)
T ss_dssp             TC---SSS-------------------------EEEECCSSHHHH------HHHHHTTCCSSEEEEEETTCTT---CCHH
T ss_pred             cc---ccc-------------------------cccccccchhhh------hhhhhhhhhhcceeeeccCccc---CcHH
Confidence            11   111                         112233321111      1223333467899999999997   4677


Q ss_pred             HHHHHHH--cCCceEEEEEEc
Q psy10030        270 FLGYCVE--QGAHCGVKVVEK  288 (484)
Q Consensus       270 ~lg~~~~--~~~~~~~~vv~k  288 (484)
                      .+.-..+  ...++.+-+++.
T Consensus       104 ~i~~li~~~~~~~~~i~~~~~  124 (205)
T d1w55a1         104 LFDRLIENLDKADCITPALKV  124 (205)
T ss_dssp             HHHHHHTTGGGCSEEEEEECC
T ss_pred             HHHHHHhhhhccccccccccc
Confidence            7776655  345555544443

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=5e-06  Score=73.70  Aligned_cols=39  Identities=36%  Similarity=0.681  Sum_probs=34.4

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID  151 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~  151 (484)
                      .++.||||||.|||||. .||.++++   .|+|++++.++.+.
T Consensus         3 ~i~~iILAgG~ssRmG~-~~K~ll~~---~g~~ll~~~l~~l~   41 (188)
T d1e5ka_           3 TITGVVLAGGKARRMGG-VDKGLLEL---NGKPLWQHVADALM   41 (188)
T ss_dssp             SEEEEEECCCCCSSSCS-SCGGGSEE---TTEEHHHHHHHHHH
T ss_pred             ceeEEEEcCCCCcCCCC-CCcccCEE---CCEehhHHHHhhhc
Confidence            58899999999999994 47999999   89999999887664

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=97.98  E-value=3.4e-05  Score=70.78  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=34.5

Q ss_pred             CEEEEEEcCCCCcccc-cc-CCCccccccCCCCCcHHHHHHHHHHH
Q psy10030        109 DVAVIVLAGGQGTRLG-AD-YPKGMYNIGLPSGKSLFQIQAEKIDK  152 (484)
Q Consensus       109 kvavviLaGG~GTRLG-~~-~PKg~~~i~l~~~~s~l~l~~~~i~~  152 (484)
                      |.++||||||.||||. +. .||.+.+|   .|+|++++.++++..
T Consensus         2 ~~~avIlA~G~~~r~~r~g~~~K~L~~i---~Gkpli~~~~~~l~~   44 (231)
T d2dpwa1           2 RPSAIVLAGGKEAWAERFGVGSKALVPY---RGRPMVEWVLEALYA   44 (231)
T ss_dssp             CCEEEEECCCBCSGGGTTTCSBGGGSEE---TTEETHHHHHHHHHH
T ss_pred             CceEEEECCCCCCCCCCCCCCCceeeEE---CCeeHHHHHHHHHHh
Confidence            5789999999999884 23 36999999   899999999998753

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.14  Score=45.03  Aligned_cols=128  Identities=14%  Similarity=0.127  Sum_probs=80.8

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      |+++||+|.|.+||+-   =|.+.++   .|+|++++.+++++...          .+--+|++|+  .+.+.+...++ 
T Consensus         3 ki~aiIpaR~~S~Rlp---~K~l~~i---~gkpLi~~~i~~~~ks~----------~id~Iivstd--~~~i~~~~~~~-   63 (228)
T d1qwja_           3 HLAALVLARGGSKGIP---LKNIKRL---AGVPLIGWVLRAALDAG----------VFQSVWVSTD--HDEIENVAKQF-   63 (228)
T ss_dssp             CEEEEEECCSCCSSSS---CTTTSEE---TTEEHHHHHHHHHHHHT----------CCSEEEEEES--CHHHHHHHHHT-
T ss_pred             CEEEEeccCCCCCCCC---Ccchhhh---CCeeHHHHHHHHHHhcC----------CcceEEEecc--hhhhhhhhhhc-
Confidence            7899999999999982   2788888   89999999999987643          3566777765  45677777763 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc-CCeEEEEEeCCCCccccCC
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR-GIKHIHVYCVDNILVKVGD  267 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~-G~~~i~v~~vDN~l~~~~D  267 (484)
                        |     +.++.+...                   .-.++......+.     +.+... -.+++.+.+.|+++   .+
T Consensus        64 --~-----~~~~~~~~~-------------------~~~~~~~~~~~i~-----~~~~~~~~~~~iv~~~~~~P~---~~  109 (228)
T d1qwja_          64 --G-----AQVHRRSSE-------------------TSKDSSTSLDAIV-----EFLNYHNEVDIVGNIQATSPC---LH  109 (228)
T ss_dssp             --T-----CEEEECCGG-------------------GSSTTCCHHHHHH-----HHHTTCTTCSEEEEECTTCTT---CC
T ss_pred             --C-----ccccccccc-------------------cccccchhhhhhh-----hccccccccceeeeecccccc---cC
Confidence              4     223332220                   0122222333221     111111 36788888999997   36


Q ss_pred             HHHHH----HHHHcCCceEEEEEEcc
Q psy10030        268 PTFLG----YCVEQGAHCGVKVVEKI  289 (484)
Q Consensus       268 p~~lg----~~~~~~~~~~~~vv~k~  289 (484)
                      |..+.    .+...+++..+.++...
T Consensus       110 ~~~I~~~i~~~~~~~~d~~~~~~~~~  135 (228)
T d1qwja_         110 PTDLQKVAEMIREEGYDSVFSVVRRH  135 (228)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEEEEEEC
T ss_pred             chhhhhhhhhhhccCccccccccccc
Confidence            76554    34456888877666543

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=95.25  E-value=0.0039  Score=56.35  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhh
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQ   65 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~   65 (484)
                      ++++++||||+|+|+|.+.||.+.+++=.-.+.+.+.
T Consensus         1 ~is~IILAaG~g~Rmg~~~pK~~~~i~gkpii~~~l~   37 (205)
T d1w55a1           1 EMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATK   37 (205)
T ss_dssp             CEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHH
T ss_pred             CeEEEEeCCccCeeCCcCCCceeEEECCEEHHHHHHH
Confidence            4789999999999999999999998853223455443

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=95.01  E-value=0.0044  Score=56.06  Aligned_cols=27  Identities=41%  Similarity=0.714  Sum_probs=17.5

Q ss_pred             CCeeeeeecCCcccccCCCCCCccccc
Q psy10030         28 GDVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        28 ~~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      ..+++++||||.|||++.+.||.+.++
T Consensus         3 k~i~~IIlAaG~GtRm~~~~pK~l~~l   29 (226)
T d1w77a1           3 KSVSVILLAGGQGKRMKMSMPKQYIPL   29 (226)
T ss_dssp             TCEEEEEECCC-------CCCTTTSEE
T ss_pred             CceEEEEeCCccCccCcCCCCceeeEE
Confidence            358999999999999999999999976

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.78  E-value=0.48  Score=41.05  Aligned_cols=181  Identities=12%  Similarity=0.053  Sum_probs=99.1

Q ss_pred             CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030        109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG  188 (484)
Q Consensus       109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~  188 (484)
                      |.-+|++|.|..||+-   -|.+.++   .|+|++++.++++++..          .+--++.+++  .+.+.+..+++ 
T Consensus         4 ~~iaiIpar~~S~R~p---~K~l~~i---~gkpLi~~~i~~~~~s~----------~~~~Iiv~td--~~~i~~i~~~~-   64 (225)
T d1eyra_           4 QNIAVILARQNSKGLP---LKNLRKM---NGISLLGHTINAAISSK----------CFDRIIVSTD--GGLIAEEAKNF-   64 (225)
T ss_dssp             EEEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHHHT----------CCSEEEEEES--CHHHHHHHHHT-
T ss_pred             CEEEEEccCCCCcCCC---Ccccccc---CCeEHHHHHHHHHHHcC----------CCceEEEeec--cchhhhhhhhh-
Confidence            4556889999889982   3888998   99999999999998632          1345566654  56677777663 


Q ss_pred             CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030        189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP  268 (484)
Q Consensus       189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp  268 (484)
                        |..   +.  .-..                   ..-.++.+.......  .++. .....+++.+++.|+++   .++
T Consensus        65 --~~~---~~--~~~~-------------------~~~~~~~~~~~~~~~--~~~~-~~~~~d~ii~~~~~~P~---~~~  112 (225)
T d1eyra_          65 --GVE---VV--LRPA-------------------ELASDTASSISGVIH--ALET-IGSNSGTVTLLQPTSPL---RTG  112 (225)
T ss_dssp             --TCE---EE--ECCH-------------------HHHSTTCCHHHHHHH--HHHH-HTCCSEEEEECCTTCTT---CCH
T ss_pred             --cce---ee--eecc-------------------ccccccccchhhccc--cccc-cccccceEEEeeccccc---ccc
Confidence              321   21  1000                   001222222222221  1122 23567999999999997   577


Q ss_pred             HHHHHHHH----cCCceEEEEEEccCCCcccceEEE-ECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        269 TFLGYCVE----QGAHCGVKVVEKITPGESLGVLCN-VDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       269 ~~lg~~~~----~~~~~~~~vv~k~~~~e~~G~l~~-~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                      ..+--+..    .+.+..+.++.....  ....+.. .+|...  .+...... .....+.   ..+..-|-+.++++.+
T Consensus       113 ~~I~~~i~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~---~~~y~~~g~iy~~~~~  184 (225)
T d1eyra_         113 AHIREAFSLFDEKIKGSVVSACPMEHH--PLKTLLQINNGEYA--PMRHLSDL-EQPRQQL---PQAFRPNGAIYINDTA  184 (225)
T ss_dssp             HHHHHHHTTCCTTTCCCEEEEEECSSC--TTSCEEECSSSCEE--ESSCGGGG-TSCGGGS---CCEEEEEEEEEEEEHH
T ss_pred             ccccccceeeccccccccceeeccccc--cccccccccccccc--cccccccc-ccccccC---cceeeecceeEEeeHH
Confidence            77655443    466766666655422  2222332 344443  22222222 1111111   1122455566788888


Q ss_pred             HHHHH
Q psy10030        344 CLQRM  348 (484)
Q Consensus       344 ~l~~~  348 (484)
                      .+.+-
T Consensus       185 ~l~~~  189 (225)
T d1eyra_         185 SLIAN  189 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            77653

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=94.68  E-value=0.22  Score=44.33  Aligned_cols=186  Identities=15%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCccccccCC-CccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        111 AVIVLAGGQGTRLGADYP-KGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       111 avviLaGG~GTRLG~~~P-Kg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      .+||.|=|-.+|+    | |.+.+|   .|+|++++.++++++        .+   +--++++++  ++.+.++.+++  
T Consensus         3 i~iIpAR~gSkri----p~KnL~~i---~GkpLI~~~i~~a~~--------s~---i~~iiVsTd--~~~i~~~~~~~--   60 (246)
T d1vh1a_           3 VVIIPARYASTRL----PGKPLVDI---NGKPMIVHVLERARE--------SG---AERIIVATD--HEDVARAVEAA--   60 (246)
T ss_dssp             EEEEECCCCCC------CCTTTCEE---TTEEHHHHHHHHHHH--------TT---CSEEEEEES--CHHHHHHHHHT--
T ss_pred             EEEEecCCCCcCC----CCchhhhc---CCccHHHHHHHHHHH--------cC---CCcEEEEec--Cccccchhhcc--
Confidence            4788884444444    7 899999   999999999998864        12   555555553  57788888774  


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT  269 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~  269 (484)
                       |.   ++.+..+..                     ..|+.-+..++      ..+.....++++.++.|.++....++.
T Consensus        61 -g~---~v~~~~~~~---------------------~~~~~~~~~~~------~~~~~~~~~~i~~~~~d~pl~~~~~i~  109 (246)
T d1vh1a_          61 -GG---EVCMTRADH---------------------QSGTERLAEVV------EKCAFSDDTVIVNVQGDEPMIPATIIR  109 (246)
T ss_dssp             -TC---EEEECC--------------------------CHHHHHHHH------HHTTCCTTCEEEECCTTCTTCCHHHHH
T ss_pred             -cc---cceeecccc---------------------cccchHHHHHH------HhhcccccceeeeeccccccchhhHHH
Confidence             42   243222211                     12333333332      222334577899999999974322222


Q ss_pred             -HHHHHHHcCCceEEEEEEccCCCccc--c---eEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030        270 -FLGYCVEQGAHCGVKVVEKITPGESL--G---VLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE  343 (484)
Q Consensus       270 -~lg~~~~~~~~~~~~vv~k~~~~e~~--G---~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~  343 (484)
                       ++-.+.....+....+++........  +   ++...+|+....-....+...........-.....+-|.+.+.|+.+
T Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~  189 (246)
T d1vh1a_         110 QVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAG  189 (246)
T ss_dssp             HHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHH
T ss_pred             HHhhhhcccccccccccccccchhcccCCCcceeeecccCcccccccccchhhhhhhhhhhhccchhhheecceeeechh
Confidence             23445566777777777665433211  1   12223444322211112111000000000001112346778899999


Q ss_pred             HHHHHh
Q psy10030        344 CLQRMV  349 (484)
Q Consensus       344 ~l~~~~  349 (484)
                      +|++..
T Consensus       190 ~l~~~~  195 (246)
T d1vh1a_         190 FIRRYV  195 (246)
T ss_dssp             HHHHHH
T ss_pred             hhhhhc
Confidence            887765

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.0098  Score=53.12  Aligned_cols=27  Identities=37%  Similarity=0.581  Sum_probs=23.5

Q ss_pred             CeeeeeecCCcccccCCCCCCcccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      ++++++||||.|||++.+-||.+.+++
T Consensus         3 ~i~AIILAaG~gtRm~~~~pK~L~~i~   29 (225)
T d1i52a_           3 DVCAVVPAAGFGRRMQTECPKQYLSIG   29 (225)
T ss_dssp             CEEEEEEECCCCGGGCCSSCGGGSEET
T ss_pred             CEEEEEeCCCcceeCCCCCCcceeEEC
Confidence            477888999999999999999998763

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=93.73  E-value=0.99  Score=39.62  Aligned_cols=60  Identities=18%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             CCEEEEEEcCCCCccccccCC-CccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030        108 GDVAVIVLAGGQGTRLGADYP-KGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER  186 (484)
Q Consensus       108 gkvavviLaGG~GTRLG~~~P-Kg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~  186 (484)
                      .|+.+|++|=|-.+||    | |.+.++   .|+|++++.+++++..          ..+--++++++  ++.+....+.
T Consensus         1 ~k~i~iIpAR~~SkRl----~~Knl~~i---~GkPli~~~i~~a~~~----------~~~d~Iiv~td--~~~i~~~~~~   61 (245)
T d1h7ea_           1 SKAVIVIPARYGSSRL----PGKPLLDI---VGKPMIQHVYERALQV----------AGVAEVWVATD--DPRVEQAVQA   61 (245)
T ss_dssp             CCEEEEEECCSCCSSS----TTGGGCEE---TTEEHHHHHHHHHHTC----------TTCCEEEEEES--CHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcCC----CCcccccc---CCccHHHHHHHHHHhC----------CCCCeEEEecc--cccchhhhhh
Confidence            3788999995555554    5 899999   9999999999888642          13556666665  3455555555

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.015  Score=52.01  Aligned_cols=25  Identities=36%  Similarity=0.729  Sum_probs=21.7

Q ss_pred             eeeeeecCCcccccCCCCCCcccccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      +|| +||||.|||+|.+.||.+.+++
T Consensus         5 iAI-ILAaG~gtRm~~~~pK~l~~i~   29 (221)
T d1vpaa_           5 VAI-LLAAGKGERMSENVPKQFLEIE   29 (221)
T ss_dssp             EEE-EEECCCCGGGCCSSCGGGCEET
T ss_pred             EEE-EccCcCcccCCCCCCcceeEEC
Confidence            555 6899999999999999999874

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.02  E-value=0.27  Score=43.75  Aligned_cols=123  Identities=20%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCccccccCC-CccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030        111 AVIVLAGGQGTRLGADYP-KGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY  189 (484)
Q Consensus       111 avviLaGG~GTRLG~~~P-Kg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~  189 (484)
                      .+||+|-|-.+|+    | |.+.++   .|+|++++.+++.++        .+   +.-+|++++  ++.+.+..+++  
T Consensus         3 ~~iIpAR~gSkRl----p~Knl~~i---~GkpLI~~~i~~a~~--------s~---i~~IiVsTd--~~~i~~~~~~~--   60 (255)
T d1vica_           3 TVIIPARFASSRL----PGKPLADI---KGKPMIQHVFEKALQ--------SG---ASRVIIATD--NENVADVAKSF--   60 (255)
T ss_dssp             EEEEECCCCCSSS----TTGGGCEE---TTEEHHHHHHHHHHH--------TT---CSEEEEEES--CHHHHHHHHHT--
T ss_pred             EEEEecCCCCCCC----CCchhhhh---CCcCHHHHHHHHHHH--------CC---CCeEEEEcC--Ccccchhhhhh--
Confidence            4778883334443    6 899999   999999999998864        12   555666654  45666666663  


Q ss_pred             CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030        190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT  269 (484)
Q Consensus       190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~  269 (484)
                       |.   ++.+..|.                     .+.|+..+..+.      +........++.++++|.++.   ++.
T Consensus        61 -~~---~~~~~~~~---------------------~~~~~~~~~~~~------~~~~~~~~~~iv~~~~d~p~~---~~~  106 (255)
T d1vica_          61 -GA---EVCMTSVN---------------------HNSGTERLAEVV------EKLAIPDNEIIVNIQGDEPLI---PPV  106 (255)
T ss_dssp             -TC---EEEECCCS---------------------SCCHHHHHHHHH------HHTTCCTTCEEEECCTTCTTC---CHH
T ss_pred             -cc---ccceeeec---------------------cCCcchhhHHHH------HHhhccCCceEEEEecchhhh---hhh
Confidence             32   23222211                     123333333322      233334678999999999974   455


Q ss_pred             HH----HHHHHcCCceEEEEEEcc
Q psy10030        270 FL----GYCVEQGAHCGVKVVEKI  289 (484)
Q Consensus       270 ~l----g~~~~~~~~~~~~vv~k~  289 (484)
                      .+    -.+..........++...
T Consensus       107 ~i~~~i~~~~~~~~~~~~~~~~~~  130 (255)
T d1vica_         107 IVRQVADNLAKFNVNMASLAVKIH  130 (255)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             hhhhhhhhcccccccccceeeecc
Confidence            44    344556777776666654

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=92.28  E-value=0.025  Score=50.80  Aligned_cols=27  Identities=33%  Similarity=0.545  Sum_probs=12.6

Q ss_pred             CeeeeeecCCcccccCCCCCCcccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESIK   55 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i~   55 (484)
                      |..+++||||.|||+|.+-||.+.+++
T Consensus         3 K~iAIIlAaG~gtRm~~~~pK~l~~i~   29 (226)
T d1vgwa_           3 KNIALIPAAGIGVRFGADKPKQYVEIG   29 (226)
T ss_dssp             CEEEEEECC----------CCSCCEET
T ss_pred             ceEEEEeCCCCcccCCcCCCeeeeEEC
Confidence            444466899999999999999999874

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.048  Score=48.56  Aligned_cols=36  Identities=28%  Similarity=0.566  Sum_probs=26.8

Q ss_pred             eeeeeecCCcccccCCCCCCccccccHHHHhhhhhh
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQ   65 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~   65 (484)
                      ..|++||||.|||++.+-||-|.+|+=.-++.+.+.
T Consensus         3 MkvIILAAG~GtRm~~~~PKpli~i~gkpiie~~i~   38 (248)
T d2oi6a2           3 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVID   38 (248)
T ss_dssp             EEEEEECCSCCGGGCCSSCGGGSEETTEEHHHHHHH
T ss_pred             ceEEEECCCCCCCCCCCCCeeeEEECChhHHHHHHH
Confidence            357889999999999999999998752224455443

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.60  E-value=0.048  Score=48.35  Aligned_cols=38  Identities=29%  Similarity=0.566  Sum_probs=27.0

Q ss_pred             eeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030         30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS   68 (484)
Q Consensus        30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~   68 (484)
                      .||+ ||||.||||+.+-||.|.+|+=..++.+.+..+.
T Consensus         3 ~AII-lAaG~GtRl~~~~PK~L~~i~Gkpli~~~l~~l~   40 (250)
T d1g97a2           3 FAII-LAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVG   40 (250)
T ss_dssp             EEEE-ECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHG
T ss_pred             EEEE-ECCCCCCCCCCCCCceeeEECCeeHHHHHHHHHH
Confidence            3554 8999999999999999998853224455444443

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=90.50  E-value=0.053  Score=50.31  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=21.0

Q ss_pred             eeeeeecCCccccc----CCCCCCccccc
Q psy10030         30 VAVIVLAGGQGTRL----GADYPNRIESI   54 (484)
Q Consensus        30 ~~~~~~aggqg~~l----~~~~pkg~~~i   54 (484)
                      +-+++||||.||||    -.+.||.+.+|
T Consensus         3 i~aVILAGG~GtRL~PlS~~~~PK~ll~i   31 (268)
T d2cu2a2           3 TYALVMAGGRGERLWPLSREDRPKPFLPL   31 (268)
T ss_dssp             EEEEEECCCCCGGGTTTCBTTBCGGGCBC
T ss_pred             ceEEEecCCCcccCCCcccCCCCceeeec
Confidence            43456999999999    77889999996

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.34  E-value=0.05  Score=51.03  Aligned_cols=26  Identities=38%  Similarity=0.500  Sum_probs=21.5

Q ss_pred             CeeeeeecCCcccccC---CCCCCcccccc
Q psy10030         29 DVAVIVLAGGQGTRLG---ADYPNRIESIK   55 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~---~~~pkg~~~i~   55 (484)
                      |-|| +||||.||||.   .+.||.+.+|+
T Consensus         4 Mkav-IlagG~GtRl~p~t~~~PK~ll~i~   32 (295)
T d1lvwa_           4 MKGI-VLAGGSGTRLYPITRAVSKQLLPIY   32 (295)
T ss_dssp             CEEE-EECCCCCSTTTTTTTSSCGGGSEET
T ss_pred             cEEE-EECCCCcccCCcccCCCCcccCeEC
Confidence            4455 58999999998   78999999874

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.092  Score=44.90  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             CeeeeeecCCcccccCCCCCCccccc
Q psy10030         29 DVAVIVLAGGQGTRLGADYPNRIESI   54 (484)
Q Consensus        29 ~~~~~~~aggqg~~l~~~~pkg~~~i   54 (484)
                      .++.++||||.|||+|. .||.+.++
T Consensus         3 ~i~~iILAgG~ssRmG~-~~K~ll~~   27 (188)
T d1e5ka_           3 TITGVVLAGGKARRMGG-VDKGLLEL   27 (188)
T ss_dssp             SEEEEEECCCCCSSSCS-SCGGGSEE
T ss_pred             ceeEEEEcCCCCcCCCC-CCcccCEE
Confidence            47788999999999983 47888865

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.86  E-value=0.12  Score=45.29  Aligned_cols=23  Identities=39%  Similarity=0.699  Sum_probs=18.9

Q ss_pred             eeeecCCcccccC---CCCCCccccc
Q psy10030         32 VIVLAGGQGTRLG---ADYPNRIESI   54 (484)
Q Consensus        32 ~~~~aggqg~~l~---~~~pkg~~~i   54 (484)
                      +++||||.||||+   ...||-|.+|
T Consensus         6 aiIlaaG~GtRl~p~t~~~pK~ll~i   31 (229)
T d1jyka_           6 AIILAAGLGTRLRPLTENTPKALVQV   31 (229)
T ss_dssp             EEEEECSCCGGGTTTTSSSCGGGCEE
T ss_pred             EEEECCCCcccCCccccCCCcceeEE
Confidence            6678899999997   5678888876

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.22  E-value=0.14  Score=45.44  Aligned_cols=33  Identities=33%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             eeeecCCcccccC---CCCCCccccccHHHHhhhhh
Q psy10030         32 VIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGY   64 (484)
Q Consensus        32 ~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~   64 (484)
                      +++||+|.||||+   ..-||.|.+|+=.-++.+.+
T Consensus         5 AiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i   40 (259)
T d1tzfa_           5 AVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIM   40 (259)
T ss_dssp             EEEEECSCC--------CCCGGGCEETTEEHHHHHH
T ss_pred             EEEECCCccccCChhhCCCCccceEECCEEHHHHHH
Confidence            4558899999998   78899999874222344433

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=85.05  E-value=0.15  Score=47.09  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             eeeeeecCCcccccC---CCCCCccccccHH-HHhhhhhhcc
Q psy10030         30 VAVIVLAGGQGTRLG---ADYPNRIESIKIQ-VYIGHGYQEL   67 (484)
Q Consensus        30 ~~~~~~aggqg~~l~---~~~pkg~~~i~~~-~f~~~~~~~L   67 (484)
                      |-.++||||.||||.   .+.||.|.+++=. -++.+.+..+
T Consensus        12 ~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l   53 (307)
T d1yp2a2          12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNC   53 (307)
T ss_dssp             EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHH
T ss_pred             eEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHH
Confidence            444557899999998   7899999998421 1345545444