Psyllid ID: psy10034

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKK
ccccHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccEEEEEEccccccccccHHHHHHHccccccccccEEEcccEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccEEEcccccccccccccccccccEEEEEcccccccHHHccccccccccccEEEEccHHHHHHccccccccEEEEEcccccccccccccEEEEEEcccccEEEEEcccccHHHHHHHcccccccccccccccEEEEccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccc
ccccHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccEEEEEcccccccccccHHHHHHHcccccHHHHHHHcccHEEEEccHHHHHHHHHHHHHHHHHHHcccEEEcccEEEcHHHccccccccccHHHHEEEcccccccccccccccccccEEEEEccccccHHccHHHcccHHHccEEEEEEcHHHHHHHccccccEEEEEEEcccccccccccccEEEEEcccccEEEEEccccHHHHHHHHHcEEEcccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccEccHHHcHccccEEEEccccccccccccccHccccHHHHHHcccccc
mvldldlfrtekggdpekvrKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEkmkakepvgdsstlpgnhlhpsvpvsnnedengivrtkgdtevrkkysHVDLITMidgvdseagaivaggrgyflkgpAVCLQVGLVQYALSKWiekgytplytpfFMRKEVMQEVAQLAQFDEELYKVIGkgekvgdsapekdelddkyliatseqpicavhrdswlpeaslpirylgvstcfrqedlTKSIAYRVVNIVSGALNHAAAKkldleawfpgsgafRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILEThqtetgvripdclrkfvpavyvneageipfvktapideeETKKQKKQKEGMKKK
mvldldlfrtekggdpekvrknqkdrfknvelvDKVIENDLKwrqfrhkadnfnkfKNLCSKVIGEKMKAKepvgdsstlpgnhlhpsvpvsnnedengivrtkgdtevrkkySHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGkgekvgdsapekdELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILEThqtetgvripdCLRKFVPAVYVNEageipfvktapideeetkkqkkqkegmkkk
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDeeetkkqkkqkegmkkk
**************************FKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG*******************************************VRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGK***************DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT*********************
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKAD*************************SSTLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK*MNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPF************************
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM**********TLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDE****************
*VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGK*************LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query399 2.2.26 [Sep-21-2011]
P26638512 Serine--tRNA ligase, cyto yes N/A 0.982 0.765 0.506 1e-131
Q6P799512 Serine--tRNA ligase, cyto yes N/A 0.979 0.763 0.511 1e-130
Q4R4U9514 Serine--tRNA ligase, cyto N/A N/A 0.982 0.762 0.499 1e-127
P49591514 Serine--tRNA ligase, cyto yes N/A 0.982 0.762 0.495 1e-126
Q5R9K9514 Serine--tRNA ligase, cyto yes N/A 0.982 0.762 0.493 1e-125
Q9GMB8514 Serine--tRNA ligase, cyto yes N/A 0.982 0.762 0.493 1e-125
Q18678487 Probable serine--tRNA lig yes N/A 0.962 0.788 0.460 1e-109
Q39230451 Serine--tRNA ligase OS=Ar yes N/A 0.872 0.771 0.409 1e-86
O81983438 Serine--tRNA ligase OS=He N/A N/A 0.864 0.787 0.420 2e-86
Q7KWQ2451 Serine--tRNA ligase, cyto yes N/A 0.904 0.800 0.411 5e-86
>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3 Back     alignment and function desciption
 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/501 (50%), Positives = 311/501 (62%), Gaps = 109/501 (21%)

Query: 1   MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNK----- 55
           MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK     
Sbjct: 1   MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 56  --------------------------FKNLCSKVI-----------------------GE 66
                                     F +L +  +                       GE
Sbjct: 61  SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120

Query: 67  KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
           ++K +    ++    GN LHPSVP+SN+ED +N + R  GD  VRKKYSHVDL+ M+DG 
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180

Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
           + E GA+VAG RGYFLKGP V L+  L+QYAL     +GYTP+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240

Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
           +QFDEELYKVIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296

Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
           +STCFRQ                                             E+  +S  
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEEFYQSLG 356

Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
           I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416

Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
            +K+EFVHMLNAT CATTR ICAILE +Q E G+ +P+ LR+F+P   + E   IPFVK 
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQAEKGIAVPEKLREFMPP-GLQEL--IPFVKP 473

Query: 379 APIDEEETKKQKKQKEGMKKK 399
           APID+E +KKQKKQ EG KKK
Sbjct: 474 APIDQEPSKKQKKQHEGSKKK 494
Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1 SV=3 Back     alignment and function description
>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS PE=2 SV=3 Back     alignment and function description
>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3 Back     alignment and function description
>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2 SV=3 Back     alignment and function description
>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3 Back     alignment and function description
>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=srs-2 PE=3 SV=1 Back     alignment and function description
>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1 Back     alignment and function description
>sp|O81983|SYS_HELAN Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1 Back     alignment and function description
>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=serS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
328712780489 PREDICTED: seryl-tRNA synthetase, cytopl 0.959 0.783 0.591 1e-155
91086675499 PREDICTED: similar to seryl-tRNA synthet 0.979 0.783 0.564 1e-147
270010395 529 hypothetical protein TcasGA2_TC009786 [T 0.979 0.739 0.564 1e-147
157108382 500 seryl-tRNA synthetase [Aedes aegypti] gi 0.939 0.75 0.573 1e-142
383854318 534 PREDICTED: serine--tRNA ligase, cytoplas 0.947 0.707 0.554 1e-142
357606091494 hypothetical protein KGM_16833 [Danaus p 0.942 0.761 0.559 1e-141
148231408 510 seryl-tRNA synthetase [Xenopus laevis] g 0.979 0.766 0.537 1e-140
417402105 512 Putative seryl-trna synthetase [Desmodus 0.979 0.763 0.54 1e-139
380025542496 PREDICTED: serine--tRNA ligase, cytoplas 0.947 0.762 0.552 1e-138
66509916496 PREDICTED: seryl-tRNA synthetase, cytopl 0.947 0.762 0.550 1e-138
>gi|328712780|ref|XP_001945803.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/497 (59%), Positives = 336/497 (67%), Gaps = 114/497 (22%)

Query: 1   MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
           MVLDLDLFRTEKGG+P+++R+NQ+ RFK+  LVD V+E D KWRQ R KADN NK KNLC
Sbjct: 1   MVLDLDLFRTEKGGNPDQIRENQRKRFKDPSLVDNVVEADGKWRQLRFKADNLNKLKNLC 60

Query: 61  SKVIGE--KMKAKEP----------VGDSSTLP--------------------------- 81
           SK IGE  K K  +P          V D+ T+                            
Sbjct: 61  SKTIGEKIKSKEPQPKDGGDVAADFVLDTITVDVLKPLSVEQIKKVRVLIDNALTQNDKD 120

Query: 82  ---------------GNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVD 126
                           N LH SVP+SN+E+EN +V T GD  V+K+YSH+DLI MIDGVD
Sbjct: 121 LLDVEKTRNDSFKEISNFLHESVPLSNDEEENAVVATVGDCTVKKRYSHIDLIHMIDGVD 180

Query: 127 SEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA 186
           ++AG  V+G RGY+LKGPAV LQ  LVQ AL +W +KGY PLYTPFFMRKE+MQEVAQLA
Sbjct: 181 ADAGTTVSGTRGYYLKGPAVFLQSALVQEALRRWDDKGYKPLYTPFFMRKEIMQEVAQLA 240

Query: 187 QFDEELYKVIGKG-EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
           QFDEELYKVIGKG EKVGD       LD+KYLIATSEQPI A+HRD WLPEAS PIRYLG
Sbjct: 241 QFDEELYKVIGKGSEKVGDH-----NLDEKYLIATSEQPIAALHRDQWLPEASFPIRYLG 295

Query: 246 VSTCFRQE-------------------------------------------------DLT 256
           VSTCFRQE                                                 DL 
Sbjct: 296 VSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPFDNQSWILFDEMINNSRQFYDDL- 354

Query: 257 KSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK 316
             IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK
Sbjct: 355 -GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK 413

Query: 317 KMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFV 376
           KMNEK+++VHMLNATACATTRVICAILET+QTETG+++P+ L+K++P  Y +   EIPFV
Sbjct: 414 KMNEKVDYVHMLNATACATTRVICAILETYQTETGIKVPEILKKYLPTRYQD---EIPFV 470

Query: 377 KTAPIDEEETKKQKKQK 393
           K+APIDEE+TKKQK +K
Sbjct: 471 KSAPIDEEDTKKQKNKK 487

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91086675|ref|XP_968460.1| PREDICTED: similar to seryl-tRNA synthetase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270010395|gb|EFA06843.1| hypothetical protein TcasGA2_TC009786 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157108382|ref|XP_001650201.1| seryl-tRNA synthetase [Aedes aegypti] gi|108879307|gb|EAT43532.1| AAEL005037-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|383854318|ref|XP_003702668.1| PREDICTED: serine--tRNA ligase, cytoplasmic-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|357606091|gb|EHJ64911.1| hypothetical protein KGM_16833 [Danaus plexippus] Back     alignment and taxonomy information
>gi|148231408|ref|NP_001080487.1| seryl-tRNA synthetase [Xenopus laevis] gi|27697084|gb|AAH43975.1| Sars-prov protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|417402105|gb|JAA47908.1| Putative seryl-trna synthetase [Desmodus rotundus] Back     alignment and taxonomy information
>gi|380025542|ref|XP_003696530.1| PREDICTED: serine--tRNA ligase, cytoplasmic-like [Apis florea] Back     alignment and taxonomy information
>gi|66509916|ref|XP_396462.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
FB|FBgn0031497501 CG17259 [Drosophila melanogast 0.421 0.335 0.686 5e-140
MGI|MGI:102809512 Sars "seryl-aminoacyl-tRNA syn 0.471 0.367 0.616 2.2e-133
RGD|628813512 Sars "seryl-tRNA synthetase" [ 0.468 0.365 0.623 1.2e-132
UNIPROTKB|Q6P799512 Sars "Serine--tRNA ligase, cyt 0.468 0.365 0.623 1.2e-132
ZFIN|ZDB-GENE-040831-1515 sars "seryl-tRNA synthetase" [ 0.421 0.326 0.658 3.1e-132
UNIPROTKB|E2R4D5513 SARS "Uncharacterized protein" 0.421 0.327 0.658 1e-131
UNIPROTKB|P49591514 SARS "Serine--tRNA ligase, cyt 0.421 0.326 0.653 1e-131
UNIPROTKB|Q5T5C7536 SARS "Serine--tRNA ligase, cyt 0.421 0.313 0.653 3.4e-131
WB|WBGene00005663487 sars-1 [Caenorhabditis elegans 0.418 0.342 0.630 2.2e-125
UNIPROTKB|F1S5Z3514 SARS "Uncharacterized protein" 0.578 0.449 0.526 1.9e-104
FB|FBgn0031497 CG17259 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 609 (219.4 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 118/172 (68%), Positives = 138/172 (80%)

Query:    82 GNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFL 141
             GNHLH SVPVSN+EDEN + RT GD E R KYSHVDLI MIDG+++E GA+V+GGRGYFL
Sbjct:   138 GNHLHESVPVSNDEDENRVERTFGDCEKRGKYSHVDLIVMIDGMNAEKGAVVSGGRGYFL 197

Query:   142 KGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK 201
              G AV L+  L+Q+AL     + Y PLYTPFFMRKEVMQEVAQL+QFDEELYKV+GKG +
Sbjct:   198 TGAAVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQEVAQLSQFDEELYKVVGKGSE 257

Query:   202 VGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 253
                   E+  +D+KYLIATSEQPI A HRD WLPE+SLPI+Y G+STCFRQE
Sbjct:   258 KA----EEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLSTCFRQE 305
GO:0004828 "serine-tRNA ligase activity" evidence=ISS
GO:0006434 "seryl-tRNA aminoacylation" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0005524 "ATP binding" evidence=IDA
MGI|MGI:102809 Sars "seryl-aminoacyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|628813 Sars "seryl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P799 Sars "Serine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040831-1 sars "seryl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4D5 SARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49591 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T5C7 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00005663 sars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5Z3 SARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4J8I4SYS_SULAC6, ., 1, ., 1, ., 1, 10.31350.83700.7292yesN/A
Q5JE75SYS_PYRKO6, ., 1, ., 1, ., 1, 10.32020.84710.7428yesN/A
A3DP85SYS_STAMF6, ., 1, ., 1, ., 1, 10.30040.86710.7538yesN/A
Q6KZN5SYS_PICTO6, ., 1, ., 1, ., 1, 10.30470.86210.7747yesN/A
Q8U1K2SYS_PYRFU6, ., 1, ., 1, ., 1, 10.31590.84710.7428yesN/A
Q2FS27SYS_METHJ6, ., 1, ., 1, ., 1, 10.30750.85460.8023yesN/A
O28244SYS_ARCFU6, ., 1, ., 1, ., 1, 10.32280.83700.7373yesN/A
Q5R9K9SYSC_PONAB6, ., 1, ., 1, ., 1, 10.49300.98240.7626yesN/A
P49591SYSC_HUMAN6, ., 1, ., 1, ., 1, 10.49500.98240.7626yesN/A
Q6P799SYSC_RAT6, ., 1, ., 1, ., 1, 10.51190.97990.7636yesN/A
C3MW57SYS_SULIM6, ., 1, ., 1, ., 1, 10.30260.82450.7199yesN/A
B6YWW5SYS_THEON6, ., 1, ., 1, ., 1, 10.31590.84710.7396yesN/A
Q0W8S5SYS_UNCMA6, ., 1, ., 1, ., 1, 10.30530.81950.7694yesN/A
C5A226SYS_THEGJ6, ., 1, ., 1, ., 1, 10.32460.84710.7428yesN/A
Q7KWQ2SYSC_DICDI6, ., 1, ., 1, ., 1, 10.41180.90470.8004yesN/A
C3NGY7SYS_SULIN6, ., 1, ., 1, ., 1, 10.30490.82450.7199yesN/A
C6A4A3SYS_THESM6, ., 1, ., 1, ., 1, 10.30920.83950.7362yesN/A
C3N6A0SYS_SULIA6, ., 1, ., 1, ., 1, 10.30490.82450.7199yesN/A
Q9HKX5SYS_THEAC6, ., 1, ., 1, ., 1, 10.32860.67410.6099yesN/A
C4KHR4SYS_SULIK6, ., 1, ., 1, ., 1, 10.30490.82450.7199yesN/A
A9A4V3SYS_NITMS6, ., 1, ., 1, ., 1, 10.31450.81700.7743yesN/A
P07284SYSC_YEAST6, ., 1, ., 1, ., 1, 10.37950.89970.7770yesN/A
Q18678SYSC_CAEEL6, ., 1, ., 1, ., 1, 10.46060.96240.7885yesN/A
Q9GMB8SYSC_BOVIN6, ., 1, ., 1, ., 1, 10.49300.98240.7626yesN/A
Q8SS48SYS_ENCCU6, ., 1, ., 1, ., 1, 10.34470.85460.7948yesN/A
B8D3V1SYS_DESK16, ., 1, ., 1, ., 1, 10.31390.82950.7211yesN/A
A2SRC6SYS_METLZ6, ., 1, ., 1, ., 1, 10.31780.77940.7317yesN/A
C3MQH9SYS_SULIL6, ., 1, ., 1, ., 1, 10.30490.82450.7199yesN/A
Q82FK8SYS1_STRAW6, ., 1, ., 1, ., 1, 10.30360.84460.7929yesN/A
Q39230SYS_ARATH6, ., 1, ., 1, ., 1, 10.40900.87210.7716yesN/A
Q2NEU9SYS_METST6, ., 1, ., 1, ., 1, 10.36930.87210.8207yesN/A
P26638SYSC_MOUSE6, ., 1, ., 1, ., 1, 10.50690.98240.7656yesN/A
B1L5G0SYS_KORCO6, ., 1, ., 1, ., 1, 10.32730.81950.7171yesN/A
A7I890SYS_METB66, ., 1, ., 1, ., 1, 10.30390.80700.7576yesN/A
A3CTP4SYS_METMJ6, ., 1, ., 1, ., 1, 10.31290.82950.7788yesN/A
A4YI40SYS_METS56, ., 1, ., 1, ., 1, 10.30480.83950.7362yesN/A
O14018SYSC_SCHPO6, ., 1, ., 1, ., 1, 10.40560.89720.7955yesN/A
Q9UZ21SYS_PYRAB6, ., 1, ., 1, ., 1, 10.30930.84710.7428yesN/A
O58441SYS_PYRHO6, ., 1, ., 1, ., 1, 10.31800.84710.7428yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.110.946
3rd Layer6.1.10.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
PLN02678448 PLN02678, PLN02678, seryl-tRNA synthetase 1e-163
cd00770297 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) 1e-119
COG0172429 COG0172, SerS, Seryl-tRNA synthetase [Translation, 1e-101
PRK05431425 PRK05431, PRK05431, seryl-tRNA synthetase; Provisi 5e-98
TIGR00414418 TIGR00414, serS, seryl-tRNA synthetase 5e-91
PLN02320502 PLN02320, PLN02320, seryl-tRNA synthetase 2e-46
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 6e-21
pfam02403108 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-t 4e-16
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 0.002
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase Back     alignment and domain information 
 Score =  465 bits (1199), Expect = e-163
 Identities = 208/468 (44%), Positives = 268/468 (57%), Gaps = 97/468 (20%)

Query: 3   LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
           LD++LFR EKGGDPE +R++Q+ RF +VELVD+VI  D +WRQ + + D+  K  N  +K
Sbjct: 2   LDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNK 61

Query: 63  VIGEKMKAKEPVGD--------------------------SSTLP--GNHLHPSVPVSNN 94
            + +   AKE   +                           + L   GN +H SVPVSN+
Sbjct: 62  EVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSND 121

Query: 95  EDENGIVRTKGDTEVRKK-YSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLV 153
           E  N +VRT G+     K  +HVDL+ ++  VD+E GA VAGGRGY+LKG  V L   L+
Sbjct: 122 EANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALI 181

Query: 154 QYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELD 213
            + L+   ++GYTPL TPFFMRK+VM + AQLAQFDEELYKV G+G             D
Sbjct: 182 NFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEG-------------D 228

Query: 214 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE-------------------- 253
           DKYLIATSEQP+CA HR  W+    LPIRY G STCFR+E                    
Sbjct: 229 DKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKV 288

Query: 254 -------------------------DLTKS--IAYRVVNIVSGALNHAAAKKLDLEAWFP 286
                                    D  +S  I Y+VV+IVSGALN AAAKK DLEAWFP
Sbjct: 289 EQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFP 348

Query: 287 GSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETH 346
            S  +RELVSCSNC DYQSRRL +RYGQ K   +  ++VH+LN+T  AT R +C ILE +
Sbjct: 349 ASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENY 408

Query: 347 QTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQKE 394
           QTE GVR+P+ L+ F+  +       +PF K  P    + K +KK+K+
Sbjct: 409 QTEDGVRVPEVLQPFMGGIEF-----LPFKKKPP---AKGKGKKKKKK 448

Length = 448
>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
PLN02678448 seryl-tRNA synthetase 100.0
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 100.0
PLN02320502 seryl-tRNA synthetase 100.0
KOG2509|consensus455 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
PRK00960517 seryl-tRNA synthetase; Provisional 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
PRK08661 477 prolyl-tRNA synthetase; Provisional 100.0
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK09194 565 prolyl-tRNA synthetase; Provisional 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
KOG2324|consensus457 100.0
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
KOG1637|consensus560 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 99.97
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 99.97
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.96
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.95
PRK04173456 glycyl-tRNA synthetase; Provisional 99.95
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 99.94
KOG4163|consensus 551 99.8
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.6
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.58
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 99.56
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.55
PRK07080317 hypothetical protein; Validated 99.5
PRK14894 539 glycyl-tRNA synthetase; Provisional 99.47
PLN02734 684 glycyl-tRNA synthetase 99.36
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.23
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.2
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 99.08
CHL00201 430 syh histidine-tRNA synthetase; Provisional 99.04
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 98.97
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 98.72
PLN02530 487 histidine-tRNA ligase 98.65
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 98.64
PRK12420 423 histidyl-tRNA synthetase; Provisional 98.63
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 98.26
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 98.11
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 97.97
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 97.92
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 97.87
PLN02972 763 Histidyl-tRNA synthetase 97.62
KOG2298|consensus 599 97.62
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 97.61
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 97.43
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 97.24
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 96.76
PRK09350306 poxB regulator PoxA; Provisional 96.63
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 96.28
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 96.18
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 96.18
KOG0555|consensus545 96.1
COG3705 390 HisZ ATP phosphoribosyltransferase involved in his 95.89
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 95.79
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 95.75
PRK06462335 asparagine synthetase A; Reviewed 95.71
PLN02850530 aspartate-tRNA ligase 95.6
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 95.6
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 95.56
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 95.5
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 95.49
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 95.47
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 95.4
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 95.36
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 95.29
PTZ00401 550 aspartyl-tRNA synthetase; Provisional 95.02
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 95.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 94.72
PRK12445505 lysyl-tRNA synthetase; Reviewed 94.56
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 94.53
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 94.52
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 94.5
PTZ00417 585 lysine-tRNA ligase; Provisional 94.44
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 94.41
PLN02502553 lysyl-tRNA synthetase 94.39
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 94.27
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 94.25
PTZ00385 659 lysyl-tRNA synthetase; Provisional 94.11
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 94.05
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 93.73
PTZ00425 586 asparagine-tRNA ligase; Provisional 93.71
PLN02903 652 aminoacyl-tRNA ligase 93.54
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 93.07
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 93.04
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 93.0
KOG1936|consensus 518 92.91
PLN02532 633 asparagine-tRNA synthetase 92.55
KOG2411|consensus 628 92.14
PLN02221 572 asparaginyl-tRNA synthetase 92.1
PLN02603565 asparaginyl-tRNA synthetase 92.08
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 91.28
KOG0556|consensus533 90.76
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 88.71
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 86.37
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 85.0
KOG0554|consensus446 84.04
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 83.34
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 82.95
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=1.9e-103  Score=801.50  Aligned_cols=362  Identities=56%  Similarity=0.899  Sum_probs=332.4

Q ss_pred             CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC----
Q psy10034          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDS----   77 (399)
Q Consensus         2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~~----   77 (399)
                      |||+++||++|+.|+|.|++++++|+.+.+.||+|+++|++||++++++++|+++||++||+|+++++.+++..+.    
T Consensus         1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~   80 (448)
T PLN02678          1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET   80 (448)
T ss_pred             CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            9999999988877999999999999987666999999999999999999999999999999999866555432110    


Q ss_pred             ------------------CCC------CCCCCCCCCCCCCCcCCCceeEeecCCccC-ccCCHHHHHHHcCCcccccccc
Q psy10034         78 ------------------STL------PGNHLHPSVPVSNNEDENGIVRTKGDTEVR-KKYSHVDLITMIDGVDSEAGAI  132 (399)
Q Consensus        78 ------------------~~l------~PN~~~~~vP~g~~e~~n~~~~~~g~~~~~-~~~dH~el~~~l~l~d~~~~~k  132 (399)
                                        ++|      |||++||+||+|.||++|++++.||.++.+ +++||++||+++|||||+++++
T Consensus        81 ~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~~~~~~  160 (448)
T PLN02678         81 KELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGAD  160 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcCCCCCCCCCCHHHHHhhccCccchhhhh
Confidence                              011      899999999999999999999999998754 5789999999999999999999


Q ss_pred             ccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCC
Q psy10034        133 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDEL  212 (399)
Q Consensus       133 ~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~  212 (399)
                      ++|++||||.|.||+|++||++|+++.+.++||++|.+|+|++.++|++||||++|.++||++.+.             +
T Consensus       161 vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~-------------~  227 (448)
T PLN02678        161 VAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGE-------------G  227 (448)
T ss_pred             hcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCC-------------C
Confidence            999999999999999999999999999999999999999999999999999999999999999743             3


Q ss_pred             CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-------------------------------------
Q psy10034        213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-------------------------------------  255 (399)
Q Consensus       213 ~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-------------------------------------  255 (399)
                      +++||+||||+++|++|++++++|++|||||+++|+|||.|+|                                     
T Consensus       228 ~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~  307 (448)
T PLN02678        228 DDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEE  307 (448)
T ss_pred             CceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHH
Confidence            5789999999999999999999999999999999999999996                                     


Q ss_pred             ----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEE
Q psy10034        256 ----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFV  325 (399)
Q Consensus       256 ----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~v  325 (399)
                                .||||||+|.+||||||++++++||||||+|++++|+||+|||||+||||||++|||++..+.++++.||
T Consensus       308 ~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~v  387 (448)
T PLN02678        308 MLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYV  387 (448)
T ss_pred             HHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeE
Confidence                      6999999999999999999999999999999999999999999999999999999999642223568999


Q ss_pred             EcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccCCCC
Q psy10034        326 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPI  381 (399)
Q Consensus       326 Htlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~  381 (399)
                      ||+||||||++|+|+|||||||++|||.||++|+|||+|.  +   +|++.+..|.
T Consensus       388 HTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g~--~---~i~~~~~~~~  438 (448)
T PLN02678        388 HLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGGI--E---FLPFKKKPPA  438 (448)
T ss_pred             EecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCCC--c---eecCCCCccc
Confidence            9999999999999999999999999999999999999987  4   7887555543

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>KOG2509|consensus Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324|consensus Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG4163|consensus Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>KOG2298|consensus Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>KOG0555|consensus Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1936|consensus Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>KOG2411|consensus Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0556|consensus Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>KOG0554|consensus Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3vbb_A522 Crystal Structure Of Seryl-Trna Synthetase From Hum 1e-120
3qne_A485 Candida Albicans Seryl-Trna Synthetase Length = 485 9e-80
3qo5_A485 Crystal Structure Of The Seryl-Trna Synthetase From 5e-79
3lsq_A484 Trypanosoma Brucei Seryl-Trna Synthetase Length = 4 2e-75
2dq0_A455 Crystal Structure Of Seryl-Trna Synthetase From Pyr 2e-54
2dq3_A425 Crystal Structure Of Aq_298 Length = 425 6e-38
1wle_A501 Crystal Structure Of Mammalian Mitochondrial Seryl- 5e-31
1sry_A421 Refined Crystal Structure Of The Seryl-Trna Synthet 3e-25
3err_A536 Microtubule Binding Domain From Mouse Cytoplasmic D 4e-25
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522 Back     alignment and structure 
Iteration: 1

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/484 (48%), Positives = 293/484 (60%), Gaps = 109/484 (22%)
Query: 1   MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKA---------- 50
           MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +A          
Sbjct: 1   MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 51  ---------------------DNFNKFKNLCSKVIG-----------------------E 66
                                +N   F +L +  +                        E
Sbjct: 61  SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 67  KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
           ++K +    ++    GN LHPSVP+SN+ED +N + R  GD  VRKKYSHVDL+ M+DG 
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
           + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
           +QFDEELYKVIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296
Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
           +STCFRQ                                             E+  +S  
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLG 356
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
           I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
            +K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ L++F+P   + E   IPFVK 
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKP 473
Query: 379 APID 382
           API+
Sbjct: 474 APIE 477
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485 Back     alignment and structure
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485 Back     alignment and structure
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484 Back     alignment and structure
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455 Back     alignment and structure
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425 Back     alignment and structure
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501 Back     alignment and structure
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 1e-168
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 1e-168
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-150
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 1e-101
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 8e-90
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 2e-81
3err_A536 Fusion protein of microtubule binding domain from 3e-74
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 5e-73
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 2e-38
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 1e-33
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522 Back     alignment and structure
 Score =  479 bits (1236), Expect = e-168
 Identities = 251/502 (50%), Positives = 305/502 (60%), Gaps = 111/502 (22%)

Query: 1   MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
           MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1   MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61  SK----------------------------------------------VIGEKMKAKEPV 74
           SK                                              +I E +   +  
Sbjct: 61  SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120

Query: 75  GDS---------STLPGNHLHPSVPVSNNEDE-NGIVRTKGDTEVRKKYSHVDLITMIDG 124
                         +  N LHPSVP+SN+ED  N + R  GD  VRKKYSHVDL+ M+DG
Sbjct: 121 RIKLEAERFENLREIG-NLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDG 179

Query: 125 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 184
            + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQEVAQ
Sbjct: 180 FEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQ 239

Query: 185 LAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYL 244
           L+QFDEELYKVIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y 
Sbjct: 240 LSQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 295

Query: 245 GVSTCFRQE--------------------------------------DLTKS-------- 258
           G+STCFRQE                                      ++  +        
Sbjct: 296 GLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSL 355

Query: 259 -IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKK 317
            I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKK
Sbjct: 356 GIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKK 415

Query: 318 MNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVK 377
           M +K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ L++F+P         IPFVK
Sbjct: 416 MMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQE---LIPFVK 472

Query: 378 TAPIDEEETKKQKKQKEGMKKK 399
            API++E +KKQKKQ EG KKK
Sbjct: 473 PAPIEQEPSKKQKKQHEGSKKK 494
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485 Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484 Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455 Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421 Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3err_A536 Fusion protein of microtubule binding domain from 100.0
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 100.0
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.97
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.96
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.93
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.92
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.81
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.71
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.63
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 99.58
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.57
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 99.55
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.44
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.32
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 99.29
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.25
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.24
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 99.05
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 98.92
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 98.85
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 98.49
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 98.16
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 97.09
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 96.79
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 96.72
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 96.62
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 96.47
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 96.26
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 96.24
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 96.17
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 96.11
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 95.96
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 95.62
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 95.55
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 95.45
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 95.36
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 95.31
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 95.11
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 94.93
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 94.89
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 94.53
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 94.0
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 91.0
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 89.87
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 89.39
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 89.09
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 88.89
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 88.6
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 87.99
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 86.96
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 84.96
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 83.06
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.7e-108  Score=849.81  Aligned_cols=392  Identities=66%  Similarity=1.068  Sum_probs=337.3

Q ss_pred             CCCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC------
Q psy10034          1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPV------   74 (399)
Q Consensus         1 ~MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~------   74 (399)
                      |||||++||++||||||.|++++++|+.+.++||+|++||++||++++++|+|+++||++||+|+++++++++.      
T Consensus         1 mmld~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~   80 (522)
T 3vbb_A            1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESV   80 (522)
T ss_dssp             -CCCGGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCC
T ss_pred             CCcCHHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhh
Confidence            99999999999999999999999999988777999999999999999999999999999999999987765421      


Q ss_pred             ----C---------------------------CCCCC-----------------CCCCCCCCCCCCCCcC-CCceeEeec
Q psy10034         75 ----G---------------------------DSSTL-----------------PGNHLHPSVPVSNNED-ENGIVRTKG  105 (399)
Q Consensus        75 ----~---------------------------~~~~l-----------------~PN~~~~~vP~g~~e~-~n~~~~~~g  105 (399)
                          .                           +...+                 |||++|++||+|.||+ +|++|++||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~dn~~vr~~g  160 (522)
T 3vbb_A           81 PENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWG  160 (522)
T ss_dssp             CGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHHGGGSCCCCCTTSCCCSCHHHHCEEEEEES
T ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcccCcEEEEEeC
Confidence                0                           00111                 7999999999999999 999999999


Q ss_pred             CCccCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCc
Q psy10034        106 DTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL  185 (399)
Q Consensus       106 ~~~~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~  185 (399)
                      +++.|.++||++||+++|||||+++++++|+|||||+|.|++|++||++|+++++.++||++|.+|.|++.++|.+||||
T Consensus       161 ~~~~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l  240 (522)
T 3vbb_A          161 DCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL  240 (522)
T ss_dssp             CSSCCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCC
T ss_pred             CCCCCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCc
Confidence            99989999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc----------
Q psy10034        186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------  255 (399)
Q Consensus       186 ~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------  255 (399)
                      ++|.++||++.+.+.+..    ++..++++||+||+|++++++|+++++||++||++|+++|+|||+|+|          
T Consensus       241 ~~f~eemy~v~~~g~~~~----~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~  316 (522)
T 3vbb_A          241 SQFDEELYKVIGKGSEKS----DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIF  316 (522)
T ss_dssp             C-CCSCCCEEC----------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSS
T ss_pred             ccCcccceEeecCCcccc----ccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcc
Confidence            999999999976421000    000135799999999999999999999999999999999999999994          


Q ss_pred             -------------------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEec
Q psy10034        256 -------------------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS  298 (399)
Q Consensus       256 -------------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~S  298 (399)
                                                           .||||||+|.+|+||||++++++||||+|+|++++|+||+|||
T Consensus       317 RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScS  396 (522)
T 3vbb_A          317 RVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCS  396 (522)
T ss_dssp             SCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEE
T ss_pred             eeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEec
Confidence                                                 8999999999999999999999999999999999999999999


Q ss_pred             CcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccC
Q psy10034        299 NCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT  378 (399)
Q Consensus       299 nc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~  378 (399)
                      ||+||||||++|+|++....+++..||||+||||||++|+|+|||||||++|||+||++|+|||+|...+   +|||++.
T Consensus       397 nc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~---~ip~~~~  473 (522)
T 3vbb_A          397 NCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQE---LIPFVKP  473 (522)
T ss_dssp             ECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSS---EEECCSC
T ss_pred             CCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcce---EeecCCC
Confidence            9999999999999987422246789999999999999999999999999999999999999999976324   9999999


Q ss_pred             CCCChHHHHHHHHhhhhccCC
Q psy10034        379 APIDEEETKKQKKQKEGMKKK  399 (399)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~  399 (399)
                      .|++.+.+++++||++|+||+
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~~  494 (522)
T 3vbb_A          474 APIEQEPSKKQKKQHEGSKKK  494 (522)
T ss_dssp             CCC------------------
T ss_pred             CCcchhHHHHhhhhhcccccc
Confidence            999999999999999999875
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 399
d1seta2311 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS 7e-45
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 1e-09
d1nyra4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 1e-09
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 1e-08
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 8e-08
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 1e-07
d1seta1110 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {T 1e-07
d1qf6a4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 8e-06
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score =  155 bits (393), Expect = 7e-45
 Identities = 72/318 (22%), Positives = 131/318 (41%), Gaps = 69/318 (21%)

Query: 94  NEDENGIVRTKGDTEVR--KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVG 151
            E+ N  ++  G           HV L+      +    + V+G R Y LKG     ++ 
Sbjct: 3   GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELA 61

Query: 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211
           L+++A+     +G+ P+  P + R++          + ++++ +                
Sbjct: 62  LLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE-------------- 107

Query: 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFR-------------------- 251
             D YL  T+E  + A+H    LP  +LP+RY G +  FR                    
Sbjct: 108 -TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFH 166

Query: 252 -------------------------QEDLTKSIA--YRVVNIVSGALNHAAAKKLDLEAW 284
                                     E++ + +   YR+V + +G +     +++D+E +
Sbjct: 167 KVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVY 226

Query: 285 FPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE 344
            P  G +RE  SCS  LD+Q+RR  +RY   +    ++ + + LN TA AT R++  +LE
Sbjct: 227 LPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTALATPRILAMLLE 283

Query: 345 THQTETG-VRIPDCLRKF 361
            HQ + G VR+P  L  +
Sbjct: 284 NHQLQDGRVRVPQALIPY 301
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 110 Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 100.0
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 100.0
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.86
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.85
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.7
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.15
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 98.25
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 97.86
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 97.81
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 97.68
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 97.6
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.44
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 96.62
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 96.6
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 95.89
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 95.67
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 95.31
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 94.77
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 93.88
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 93.48
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=100.00  E-value=8.4e-79  Score=594.49  Aligned_cols=256  Identities=29%  Similarity=0.541  Sum_probs=243.9

Q ss_pred             CCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEe
Q psy10034         91 VSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPL  168 (399)
Q Consensus        91 ~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev  168 (399)
                      ||+ |++|++|++||+++.  |+++||++||+++||+|+ +++|++|+|||||+|.||+|++||++|++|.+.++||++|
T Consensus         1 vG~-e~~n~~i~~~G~~~~~~f~~k~H~el~~~l~l~d~-~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v   78 (311)
T d1seta2           1 VGG-EEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPM   78 (311)
T ss_dssp             SSS-GGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBCT-THHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCC-ccCCEEEEEECCCCCCCCCCCCHHHHHHHcCCcch-hhceeecCceEEEECHHHHHHHHHHHHHHHhhhcccceEE
Confidence            575 557999999999985  789999999999999995 6889999999999999999999999999999999999999


Q ss_pred             cCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeecc
Q psy10034        169 YTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST  248 (399)
Q Consensus       169 ~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~  248 (399)
                      ++|+|++.++|++|||+++|.+++|++.+               +++||+||||+++++||+++++++++||+||+++|+
T Consensus        79 ~~P~lv~~~~~~~~G~~p~f~~~~y~~~~---------------~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~  143 (311)
T d1seta2          79 TLPSYAREKAFLGTGHFPAYRDQVWAIAE---------------TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAP  143 (311)
T ss_dssp             ECCSEEEHHHHHHHTCTTTTGGGSCBBTT---------------SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEE
T ss_pred             eechhhccchhhhcccccccccccccccc---------------cceeecccccchhhhhhhhhhhhhhhccceEEeecc
Confidence            99999999999999999999999998863               479999999999999999999999999999999999


Q ss_pred             ccccCCc-----------------------------------------------cCCccEEEEEeccCCCCccccceece
Q psy10034        249 CFRQEDL-----------------------------------------------TKSIAYRVVNIVSGALNHAAAKKLDL  281 (399)
Q Consensus       249 ~fR~E~g-----------------------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydi  281 (399)
                      |||.|+|                                               +|+||||+|.+|++|+|++++++|||
T Consensus       144 cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~dl~~~a~~~~di  223 (311)
T d1seta2         144 AFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDI  223 (311)
T ss_dssp             EECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEE
T ss_pred             cchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhccccCCCCchHHHhhhHH
Confidence            9999986                                               89999999999999999999999999


Q ss_pred             eeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCc-eecCccccc
Q psy10034        282 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRK  360 (399)
Q Consensus       282 E~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~p  360 (399)
                      |+|||++++|+||+|||||+|||||||+|+|++.   +++..|+||+|||++|++|+|+|||||||++|| |.||++|+|
T Consensus       224 E~w~P~~~~y~Ev~S~sn~~d~qsrRl~i~y~~~---dg~~~~~htlngT~~ai~R~l~allEn~q~~dG~v~iP~~L~p  300 (311)
T d1seta2         224 EVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIP  300 (311)
T ss_dssp             EEEEGGGTEEEEEEEEEECTTHHHHHHTCEEECT---TSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHH
T ss_pred             HHhHhhcCCcccccCceecchHHHhhcccEEECC---CCCEEeEEEecCchhHHHHHHHHHHHhccCCCCcEeCChhhhh
Confidence            9999999999999999999999999999999975   577899999999999999999999999999999 889999999


Q ss_pred             ccCCcc
Q psy10034        361 FVPAVY  366 (399)
Q Consensus       361 y~~~~~  366 (399)
                      |||+..
T Consensus       301 y~~~~~  306 (311)
T d1seta2         301 YMGKEV  306 (311)
T ss_dssp             HHSSSE
T ss_pred             hcCCce
Confidence            998763
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure