Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 51
cd00449 256
cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen
6e-12 cd01557 279
cd01557, BCAT_beta_family, BCAT_beta_family: Branc
6e-12 PRK13357 356
PRK13357, PRK13357, branched-chain amino acid amin
7e-10 COG0115 284
COG0115, IlvE, Branched-chain amino acid aminotran
6e-08 TIGR01123 313
TIGR01123, ilvE_II, branched-chain amino acid amin
4e-07 pfam01063 231
pfam01063, Aminotran_4, Aminotransferase class IV
6e-07 PLN03117 355
PLN03117, PLN03117, Branched-chain-amino-acid amin
6e-07 PRK06606 306
PRK06606, PRK06606, branched-chain amino acid amin
5e-06 PLN02782 403
PLN02782, PLN02782, Branched-chain amino acid amin
7e-06 cd01558 270
cd01558, D-AAT_like, D-Alanine aminotransferase (D
1e-05 cd01559 249
cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor
2e-04 PLN02883 384
PLN02883, PLN02883, Branched-chain amino acid amin
7e-04 TIGR01122 298
TIGR01122, ilvE_I, branched-chain amino acid amino
0.002
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)
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Score = 56.8 bits (138), Expect = 6e-12
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
E++TP LDG ILPGITR S++EL+ + KV ER I++ ++
Sbjct: 174 ELVTPPLDGGILPGITRDSVIELAKELG-IKVEERPISLDEL 214
This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate
Back Show alignment and domain information
Score = 57.2 bits (139), Expect = 6e-12
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
E+ITP LDG ILPGITR SILEL+ KV ER IT ++
Sbjct: 189 ELITPPLDGSILPGITRDSILELARDLG-IKVEERPITRDEL 229
The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life. Length = 279
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional
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Score = 51.3 bits (124), Expect = 7e-10
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITM 40
+TP L G ILPGITR S+L+L+ V ER +++
Sbjct: 247 VTPPLSGSILPGITRDSLLQLAEDLG-LTVEERPVSI 282
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
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Score = 45.8 bits (109), Expect = 6e-08
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45
++TP L G ILPGITR S+LEL+ + V ER IT+ D+ Q
Sbjct: 197 VLVTPPLSGGILPGITRDSLLELAKELG-LTVEERPITLEDLKQ 239
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II
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Score = 43.6 bits (103), Expect = 4e-07
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITM 40
E++TP L G ILPGITR S+L+L+ +V ER+I +
Sbjct: 205 ELVTPPLSGSILPGITRDSLLQLAKDLG-MEVEERRIDI 242
Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 313
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV
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Score = 43.2 bits (102), Expect = 6e-07
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
TP L+ ILPGITR ++L+L+ + +V ER +T+ D+
Sbjct: 153 YTPPLESGILPGITRQALLDLAKELG-IEVEERPLTLADL 191
The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity. Length = 231
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional
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Score = 43.0 bits (101), Expect = 6e-07
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 5 TPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45
TP G ILPG+TR SI EL+ Y+V ER +++ ++++
Sbjct: 250 TPPTSGTILPGVTRKSISELARDIG-YQVEERDVSVDELLE 289
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated
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Score = 40.5 bits (96), Expect = 5e-06
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKIT 39
+ TP L IL GITR +++ L+ +V ER+IT
Sbjct: 206 VLYTPPLTSSILEGITRDTVITLAKD-LGIEVIERRIT 242
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase
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Score = 40.2 bits (94), Expect = 7e-06
Identities = 16/41 (39%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 TPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45
TP + G ILPGITR SI++++ + ++V ER +T+ ++++
Sbjct: 301 TPAIKGTILPGITRKSIIDVA-RSQGFQVEERNVTVDELLE 340
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids
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Score = 39.1 bits (92), Expect = 1e-05
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
+TP LD ILPGITR +++EL+ + V ER ++ ++
Sbjct: 190 VTPPLDNGILPGITRATVIELAKE-LGIPVEERPFSLEEL 228
It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life. Length = 270
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate
Back Show alignment and domain information
Score = 35.7 bits (83), Expect = 2e-04
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPD 42
E++TP+LD L GITR ++EL+ Y V ER + + D
Sbjct: 170 ELVTPSLDRGGLAGITRQRVIELAAA-KGYAVDERPLRLED 209
Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria. Length = 249
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase
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Score = 34.3 bits (78), Expect = 7e-04
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 3 MITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
++TP G IL GITR SI+E++ YKV ER++ + ++
Sbjct: 281 IVTPATSGTILGGITRKSIIEIALDLG-YKVEERRVPVEEL 320
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I
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Score = 33.5 bits (77), Expect = 0.002
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
+ TP + ILPGITR +++ L+ + +V E+ I+ ++
Sbjct: 198 VLFTPPVTSSILPGITRDTVITLAKELG-IEVVEQPISREEL 238
Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 298
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
51
PRK12400 290
D-amino acid aminotransferase; Reviewed
99.56 PRK13356 286
aminotransferase; Provisional
99.53 PRK07650 283
4-amino-4-deoxychorismate lyase; Provisional
99.53 TIGR01123 313
ilvE_II branched-chain amino acid aminotransferase
99.52 PLN02883 384
Branched-chain amino acid aminotransferase
99.52 cd00449 256
PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes
99.52 PRK06092 268
4-amino-4-deoxychorismate lyase; Reviewed
99.52 PLN02782 403
Branched-chain amino acid aminotransferase
99.52 PRK12479 299
branched-chain amino acid aminotransferase; Provis
99.52 PLN03117 355
Branched-chain-amino-acid aminotransferase; Provis
99.51 PLN02259 388
branched-chain-amino-acid aminotransferase 2
99.51 TIGR03461 261
pabC_Proteo aminodeoxychorismate lyase. Members of
99.51 TIGR01121 276
D_amino_aminoT D-amino acid aminotransferase. Spec
99.51 PRK08320 288
branched-chain amino acid aminotransferase; Review
99.51 cd01558 270
D-AAT_like D-Alanine aminotransferase (D-AAT_like)
99.51 TIGR01122 298
ilvE_I branched-chain amino acid aminotransferase,
99.5 PF01063 231
Aminotran_4: Aminotransferase class IV; InterPro:
99.5 PRK06680 286
D-amino acid aminotransferase; Reviewed
99.49 PRK07849 292
4-amino-4-deoxychorismate lyase; Provisional
99.49 cd01559 249
ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya
99.49 PRK06606 306
branched-chain amino acid aminotransferase; Valida
99.48 cd01557 279
BCAT_beta_family BCAT_beta_family: Branched-chain
99.47 COG0115 284
IlvE Branched-chain amino acid aminotransferase/4-
99.46 PRK13357 356
branched-chain amino acid aminotransferase; Provis
99.43 KOG0975|consensus 379
99.43 PRK07544 292
branched-chain amino acid aminotransferase; Valida
99.42 PRK09266 266
hypothetical protein; Provisional
99.34 PLN02845 336
Branched-chain-amino-acid aminotransferase-like pr
99.27 PRK07546 209
hypothetical protein; Provisional
99.16 PRK07101 187
hypothetical protein; Provisional
98.93 PF01081 196
Aldolase: KDPG and KHG aldolase; InterPro: IPR0008
89.88 PRK06015 201
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog
88.58 PRK07114 222
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog
87.07 TIGR01182 204
eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho
86.2 PRK06552 213
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog
85.4 COG0800 211
Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca
85.27 cd03030 92
GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3
82.69 PRK15007 243
putative ABC transporter arginine-biding protein;
81.8
>PRK12400 D-amino acid aminotransferase; Reviewed
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Probab=99.56 E-value=7.4e-15 Score=88.59 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 196 ~l~TPpl~~g~L~GItR~~llela~~~-gi~v~E~~i~~~eL~~Adev 242 (290)
T PRK12400 196 TLYTHPANHLILNGIIRQYVLSLAKTL-RIPVQEELFSVRDVYQADEC 242 (290)
T ss_pred EEEeCCCCCCcCcCHHHHHHHHHHHHc-CCcEEEEeCCHHHHHhCCee
Confidence 589999999999999999999999999 89999999999999999973
>PRK13356 aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.53 E-value=1.7e-14 Score=86.78 Aligned_cols=47 Identities=28% Similarity=0.421 Sum_probs=44.8
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.|++++++. |++|+|++++++||.+|||.
T Consensus 199 ~l~TP~~~~~~L~GItR~~vi~~a~~~-gi~v~e~~i~~~eL~~adev 245 (286)
T PRK13356 199 VVFTPVPNGTFLNGITRQRVIALLRED-GVTVVETTLTYEDFLEADEV 245 (286)
T ss_pred EEEcCCCCCCcccCHHHHHHHHHHHHc-CCeEEEEecCHHHHHhcCce
Confidence 589999999999999999999999999 89999999999999999974
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Back Show alignment and domain information
Probab=99.53 E-value=1.9e-14 Score=86.39 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 190 ~l~TP~l~~g~L~GitR~~li~~~~~~-g~~v~e~~i~~~dL~~adei 236 (283)
T PRK07650 190 IVYTPSLETGILNGITRAFVIKVLEEL-GIEVKEGFYTKEELLSADEV 236 (283)
T ss_pred EEEcCCCcCCCcccHHHHHHHHHHHHc-CCeEEEEecCHHHHhhCCEe
Confidence 589999999999999999999999999 89999999999999999873
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II
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Probab=99.52 E-value=3.3e-14 Score=86.47 Aligned_cols=47 Identities=40% Similarity=0.723 Sum_probs=44.0
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.+++++++. |++|+|++++++||.+|+++
T Consensus 205 ~l~Tp~l~~~~L~GItR~~vi~l~~~~-Gi~v~e~~i~~~~l~~A~~~ 251 (313)
T TIGR01123 205 ELVTPPLSGSILPGITRDSLLQLAKDL-GMEVEERRIDIDELKAFVEA 251 (313)
T ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHc-CCeEEEEecCHHHHHHHHhc
Confidence 589999999999999999999999999 89999999999999999443
Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
>PLN02883 Branched-chain amino acid aminotransferase
Back Show alignment and domain information
Probab=99.52 E-value=2e-14 Score=90.19 Aligned_cols=47 Identities=36% Similarity=0.627 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||++|+++|+++ |++|+|++|+++||.+|||.
T Consensus 280 ~l~TP~l~~~iLpGITR~svl~la~~~-G~~V~Er~i~~~eL~~AdEv 326 (384)
T PLN02883 280 IIVTPATSGTILGGITRKSIIEIALDL-GYKVEERRVPVEELKEAEEV 326 (384)
T ss_pred EEEeCCCcCCcCcCHHHHHHHHHHHHC-CCeEEEEECCHHHHHhCCEe
Confidence 589999999999999999999999999 89999999999999999874
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)
Back Show alignment and domain information
Probab=99.52 E-value=2.3e-14 Score=84.34 Aligned_cols=47 Identities=45% Similarity=0.728 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.|+|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 174 ~l~TP~~~~g~L~GitR~~vl~~~~~~-g~~v~e~~i~~~dL~~adev 220 (256)
T cd00449 174 ELVTPPLDGGILPGITRDSVIELAKEL-GIKVEERPISLDELYAADEV 220 (256)
T ss_pred EEEeCCCCCCcCcchhHHHHHHHHHHc-CCeEEEEecCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999873
This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Back Show alignment and domain information
Probab=99.52 E-value=2.3e-14 Score=85.39 Aligned_cols=47 Identities=32% Similarity=0.417 Sum_probs=44.5
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 186 ~~~TP~~~~~~L~GitR~~vl~~~~~~-g~~v~e~~i~~~dL~~adev 232 (268)
T PRK06092 186 VVYTPDLDQCGVAGVMRQFILELLAQS-GYPVVEVDASLEELLQADEV 232 (268)
T ss_pred EEECCCccccCcccHHHHHHHHHHHHc-CCeEEEEECCHHHHhhCCEE
Confidence 589999998999999999999999999 89999999999999999873
>PLN02782 Branched-chain amino acid aminotransferase
Back Show alignment and domain information
Probab=99.52 E-value=2.3e-14 Score=90.34 Aligned_cols=47 Identities=34% Similarity=0.675 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||++|+++|+++ |++|+|+.|+++||.+|||.
T Consensus 298 ~l~TP~l~~~iLpGITR~svlela~~~-Gi~V~Er~i~~~eL~~AdEv 344 (403)
T PLN02782 298 VISTPAIKGTILPGITRKSIIDVARSQ-GFQVEERNVTVDELLEADEV 344 (403)
T ss_pred EEEcCCCcCCcCcCHHHHHHHHHHHHc-CCeEEEEECCHHHHhhCCEE
Confidence 689999999999999999999999999 89999999999999999974
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.52 E-value=2.8e-14 Score=86.41 Aligned_cols=47 Identities=30% Similarity=0.341 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.+++++|.+|||.
T Consensus 198 ~l~TP~l~~giL~GItR~~il~~~~~~-g~~v~e~~i~~~~L~~adev 244 (299)
T PRK12479 198 KVLTPPSYLGALEGITRNSVIELCERL-SIPCEERPFTRHDVYVADEV 244 (299)
T ss_pred EEEeCCCcCCCCcCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHhCCee
Confidence 589999999999999999999999999 89999999999999999974
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.51 E-value=2.7e-14 Score=88.60 Aligned_cols=47 Identities=36% Similarity=0.631 Sum_probs=44.8
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||++++++|+||||+.++++|++. |++|+|+.++++||.+|||.
T Consensus 247 ~l~TP~l~~~iL~GItR~~vl~la~~~-Gi~v~Er~i~~~eL~~AdEv 293 (355)
T PLN03117 247 IVSTPPTSGTILPGVTRKSISELARDI-GYQVEERDVSVDELLEAEEV 293 (355)
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHC-CCEEEEEEccHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999974
>PLN02259 branched-chain-amino-acid aminotransferase 2
Back Show alignment and domain information
Probab=99.51 E-value=2.6e-14 Score=89.80 Aligned_cols=47 Identities=30% Similarity=0.593 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||++|+++|++. |++|+|+.++++||.+|||.
T Consensus 284 ~l~TP~l~~~iL~GITR~sIl~la~~~-G~~V~Er~i~~~eL~~AdEv 330 (388)
T PLN02259 284 TISTPATNGTILEGITRKSVMEIASDQ-GYQVVEKAVHVDEVMDADEV 330 (388)
T ss_pred EEEcCCCcCCcCcCHHHHHHHHHHHHC-CCeEEEEECCHHHHHhCCEE
Confidence 589999999999999999999999999 89999999999999999974
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase
Back Show alignment and domain information
Probab=99.51 E-value=2.5e-14 Score=84.88 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=44.5
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 184 ~l~TP~~~~~~L~GItR~~il~~~~~~-g~~v~E~~i~~~eL~~ade~ 230 (261)
T TIGR03461 184 QVFTPDLSYCGVAGVMRQHVLALLPAL-GYEIEEVKAGLEELLSADEV 230 (261)
T ss_pred EEECCCccccCcccHHHHHHHHHHHHc-CCeEEEEecCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999873
Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase
Back Show alignment and domain information
Probab=99.51 E-value=3.1e-14 Score=85.36 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.++++++++ |++|+|++++++||.+|||.
T Consensus 189 ~~~TP~~~~~~L~GitR~~vl~~a~~~-g~~v~e~~i~~~el~~ade~ 235 (276)
T TIGR01121 189 VLYTHPANNLILNGITRMVILACAEEN-GIPVKEEPFTKEELLNADEV 235 (276)
T ss_pred EEEeCCCcCCCCcCHHHHHHHHHHHHC-CCeEEEEeCCHHHHhcCCEE
Confidence 589999999999999999999999999 89999999999999999873
Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Back Show alignment and domain information
Probab=99.51 E-value=3.2e-14 Score=85.51 Aligned_cols=47 Identities=28% Similarity=0.412 Sum_probs=44.8
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 197 ~l~TP~~~~~~L~GitR~~ll~~~~~~-g~~v~e~~l~~~dL~~ade~ 243 (288)
T PRK08320 197 KLITPPTYAGALEGITRNAVIEIAKEL-GIPVREELFTLHDLYTADEV 243 (288)
T ss_pred EEECCCCcCCCCcCHHHHHHHHHHHHc-CCeEEEEECCHHHHHhCCEE
Confidence 589999999999999999999999999 89999999999999999873
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids
Back Show alignment and domain information
Probab=99.51 E-value=3.2e-14 Score=84.66 Aligned_cols=47 Identities=34% Similarity=0.611 Sum_probs=44.6
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 188 ~l~TP~~~~~~L~GitR~~vl~~a~~~-g~~v~e~~i~~~eL~~ade~ 234 (270)
T cd01558 188 VLVTPPLDNGILPGITRATVIELAKEL-GIPVEERPFSLEELYTADEV 234 (270)
T ss_pred EEECCCCcCCCCCChHHHHHHHHHHHc-CCeEEEEeCCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999873
It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I
Back Show alignment and domain information
Probab=99.50 E-value=3.3e-14 Score=85.85 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.|+++|++. |++|+|+.++++||.+|||.
T Consensus 198 ~l~TP~~~~~~L~GItR~~il~la~~~-g~~v~e~~i~~~eL~~adev 244 (298)
T TIGR01122 198 VLFTPPVTSSILPGITRDTVITLAKEL-GIEVVEQPISREELYTADEA 244 (298)
T ss_pred EEECCCCCCCcCcchHHHHHHHHHHHc-CCcEEEEeCCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999873
Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue
Back Show alignment and domain information
Probab=99.50 E-value=3.7e-14 Score=82.18 Aligned_cols=47 Identities=45% Similarity=0.633 Sum_probs=41.6
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.|+|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 152 ~~~TP~~~~giL~Gitr~~ll~~~~~~-g~~v~e~~i~~~~L~~ade~ 198 (231)
T PF01063_consen 152 TLYTPPLDSGILPGITRQLLLELAKEL-GIPVEERPITLDDLQQADEV 198 (231)
T ss_dssp EEEEESGSSSSB--HHHHHHHHHHHHT-TSEEEEE-BBHHHHHTHSEE
T ss_pred EEEcCChhhhhccHHHHHHHHHHHHhC-CCCcEEEEeCHHHhhhhhhe
Confidence 589999999999999999999999998 89999999999999999873
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
>PRK06680 D-amino acid aminotransferase; Reviewed
Back Show alignment and domain information
Probab=99.49 E-value=5.5e-14 Score=84.68 Aligned_cols=47 Identities=30% Similarity=0.577 Sum_probs=44.8
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 195 ~l~TP~~~~~iL~Gitr~~il~~a~~~-g~~v~e~~i~~~el~~ade~ 241 (286)
T PRK06680 195 KLVTRPADNFILPGITRHTLIDLAKEL-GLEVEERPFTLQEAYAAREA 241 (286)
T ss_pred EEEeCCCCCCCCcCHHHHHHHHHHHHc-CCeEEEEcCCHHHHhcCcEE
Confidence 589999999999999999999999999 89999999999999999974
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Back Show alignment and domain information
Probab=99.49 E-value=5.4e-14 Score=85.12 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 205 ~l~TP~~~~giL~GItR~~vie~~~~~-g~~v~er~i~~~eL~~Adev 251 (292)
T PRK07849 205 RLLTPPPWYGILPGTTQAALFEVAREK-GWDCEYRALRPADLFAADGV 251 (292)
T ss_pred EEECCCCcCCCCccHHHHHHHHHHHHc-CCceEEEECCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999974
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate
Back Show alignment and domain information
Probab=99.49 E-value=5.4e-14 Score=83.07 Aligned_cols=46 Identities=37% Similarity=0.603 Sum_probs=44.2
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||
T Consensus 170 ~~~TP~~~~g~L~Gitr~~~l~~~~~~-g~~v~e~~i~~~el~~ade 215 (249)
T cd01559 170 ELVTPSLDRGGLAGITRQRVIELAAAK-GYAVDERPLRLEDLLAADE 215 (249)
T ss_pred EEECCCcccCccccHHHHHHHHHHHHc-CceEEEEecCHHHHhhCCE
Confidence 589999999999999999999999999 8999999999999999986
Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
>PRK06606 branched-chain amino acid aminotransferase; Validated
Back Show alignment and domain information
Probab=99.48 E-value=6.1e-14 Score=85.10 Aligned_cols=47 Identities=32% Similarity=0.476 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|++++++||.+|||.
T Consensus 206 ~l~TP~~~~giL~GitR~~vl~~~~~~-g~~v~e~~i~~~eL~~Adev 252 (306)
T PRK06606 206 VLYTPPLTSSILEGITRDTVITLAKDL-GIEVIERRITRDELYIADEV 252 (306)
T ss_pred EEECCCCcCCcCCCHHHHHHHHHHHHc-CCcEEEEeCCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999973
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate
Back Show alignment and domain information
Probab=99.47 E-value=8.4e-14 Score=83.73 Aligned_cols=47 Identities=53% Similarity=0.748 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|++++++||.+|||.
T Consensus 189 ~l~TP~~~~~~L~Gitr~~v~~~~~~~-Gi~v~e~~i~~~~l~~ade~ 235 (279)
T cd01557 189 ELITPPLDGSILPGITRDSILELARDL-GIKVEERPITRDELYEADEV 235 (279)
T ss_pred EEEcCCCcCCCCCchHHHHHHHHHHHc-CCeEEEEeCCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999973
The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.46 E-value=1.2e-13 Score=83.25 Aligned_cols=46 Identities=48% Similarity=0.716 Sum_probs=44.3
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+||+++.++|+||||+.++++|++. |+++.|++|+.+++.+|||
T Consensus 197 ~~~TP~~~~~iL~GitR~~li~la~~~-G~~v~E~~i~~~~l~~ade 242 (284)
T COG0115 197 VLVTPPLSGGILPGITRDSLLELAKEL-GLTVEERPITLEDLKQADE 242 (284)
T ss_pred EEECCCCCCCccccHHHHHHHHHHHHc-CceEEEeecCHHHHhhCCE
Confidence 489999999999999999999999998 8999999999999999997
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.43 E-value=2e-13 Score=84.62 Aligned_cols=47 Identities=36% Similarity=0.628 Sum_probs=44.1
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHH------Hhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPD------IVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~------l~~ade~ 49 (51)
+|+|||++.++|+||||+.|+++|++. |++|+|+.++++| |.+|||.
T Consensus 245 ~l~TPpl~~giL~GItR~~vlela~~~-Gi~v~e~~i~~~el~~~~~L~~Adev 297 (356)
T PRK13357 245 GTVTPPLSGSILPGITRDSLLQLAEDL-GLTVEERPVSIDEWQADAASGEFTEA 297 (356)
T ss_pred EEEECCCCCCCCcchHHHHHHHHHHHC-CCeEEEEecCHHHhhhhhccCcceEE
Confidence 589999999999999999999999999 8999999999999 8888873
>KOG0975|consensus
Back Show alignment and domain information
Probab=99.43 E-value=2.1e-13 Score=85.43 Aligned_cols=46 Identities=48% Similarity=0.833 Sum_probs=44.2
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCC-CeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWND-YKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g-~~v~e~~i~~~~l~~ade 48 (51)
++.|||++..||+||||++++++|+++ | ++|+|+.++++|+.+|+|
T Consensus 273 elvTPp~dg~ILpGvTR~sileLa~~~-g~~~V~Er~vtv~e~~~A~E 319 (379)
T KOG0975|consen 273 ELVTPPLDGTILPGVTRKSILELARDL-GEFKVEERDVTVDELKTADE 319 (379)
T ss_pred eEecCCCCCcccCCccHHHHHHHHHHh-CceEEEEEEEeHHHhhhhHh
Confidence 489999998999999999999999999 7 999999999999999997
>PRK07544 branched-chain amino acid aminotransferase; Validated
Back Show alignment and domain information
Probab=99.42 E-value=2.8e-13 Score=81.74 Aligned_cols=46 Identities=35% Similarity=0.502 Sum_probs=42.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++ ++|+||||+.|++++++. |++|+|++++++||.+|||.
T Consensus 204 ~l~TP~~~-~~L~GItR~~vl~~a~~~-g~~v~e~~i~~~eL~~adev 249 (292)
T PRK07544 204 VIHTPTPD-CFLDGITRQTVIELAKRR-GIEVVERHIMPEELAGFSEC 249 (292)
T ss_pred EEECCCCc-ccccchhHHHHHHHHHHc-CCeEEEEecCHHHHhhcCce
Confidence 58999986 599999999999999999 89999999999999999973
>PRK09266 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.34 E-value=2.5e-12 Score=76.74 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=42.0
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+. ++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 180 ~l~TP~~--~~L~GItR~~ll~~~~~~-g~~v~e~~i~~~eL~~adev 224 (266)
T PRK09266 180 AVVWPQA--PALPGVTMALLQRGLERL-GIPQRTRPVTLADLGRFAGA 224 (266)
T ss_pred EEECCCC--CccchHHHHHHHHHHHHc-CCeeEEEECCHHHHHHhhHh
Confidence 5899985 699999999999999999 89999999999999999984
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Back Show alignment and domain information
Probab=99.27 E-value=8.1e-12 Score=77.12 Aligned_cols=46 Identities=30% Similarity=0.474 Sum_probs=41.4
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCC--C--CeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWN--D--YKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~--g--~~v~e~~i~~~~l~~ade 48 (51)
+|+||+++. +|+||||+.+++++++.. | ++|+|+.++++||.+|||
T Consensus 232 ~l~TP~l~~-iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdE 281 (336)
T PLN02845 232 ELVLPPFDK-ILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADE 281 (336)
T ss_pred EEEeCCCCC-cCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCE
Confidence 589999985 999999999999998631 6 899999999999999997
>PRK07546 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.16 E-value=4.6e-11 Score=69.41 Aligned_cols=41 Identities=29% Similarity=0.496 Sum_probs=37.4
Q ss_pred EEE-ecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMI-TPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~-TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|| ||+++.++|+||||+.+++ ..+++|+.++++||.+|||
T Consensus 152 ~~~~TP~~~~g~L~Gi~R~~ll~------~~~v~e~~i~~~~L~~ade 193 (209)
T PRK07546 152 GMLTTPPLSCGLLPGVLRAELLD------AGRAREAVLTVDDLKSARA 193 (209)
T ss_pred EEEECCCCcCCCCccHHHHHHHh------hCCeEEEEcCHHHHhhCCE
Confidence 478 9999999999999999997 3579999999999999986
>PRK07101 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.93 E-value=1.4e-09 Score=62.68 Aligned_cols=39 Identities=31% Similarity=0.541 Sum_probs=34.8
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
.|+||| .++|+||||+.+++ . | +|.|+.++++||.+||+
T Consensus 139 ~~~TP~--~~~L~Gi~R~~ll~----~-~-~v~e~~i~~~~L~~ad~ 177 (187)
T PRK07101 139 QWFTPK--KPLLKGTQRARLLD----E-G-KIKEKDITVEDLLQYEE 177 (187)
T ss_pred EEEcCC--CCCccHHHHHHHHc----c-C-CEEEEecCHHHHhcCCE
Confidence 589999 37999999999996 3 4 79999999999999987
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4
Back Show alignment and domain information
Probab=89.88 E-value=0.73 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+++.+++. |+++.-...|+.|+.+|-+.|
T Consensus 91 ~~v~~~~~~~-~i~~iPG~~TptEi~~A~~~G 121 (196)
T PF01081_consen 91 PEVIEYAREY-GIPYIPGVMTPTEIMQALEAG 121 (196)
T ss_dssp HHHHHHHHHH-TSEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCcccCCcCCHHHHHHHHHCC
Confidence 4788899998 899999999999999998877
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Back Show alignment and domain information
Probab=88.58 E-value=0.66 Score=27.45 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+++.+++. |+.+.-...|+.|+..|-+.|
T Consensus 87 ~~vi~~a~~~-~i~~iPG~~TptEi~~A~~~G 117 (201)
T PRK06015 87 QELLAAANDS-DVPLLPGAATPSEVMALREEG 117 (201)
T ss_pred HHHHHHHHHc-CCCEeCCCCCHHHHHHHHHCC
Confidence 3778889998 899999999999999998887
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Back Show alignment and domain information
Probab=87.07 E-value=0.91 Score=27.22 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=27.4
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+.+. |+++.-...|+.|+.+|-+.|
T Consensus 103 ~v~~~~~~~-~i~~iPG~~TpsEi~~A~~~G 132 (222)
T PRK07114 103 DIAKVCNRR-KVPYSPGCGSLSEIGYAEELG 132 (222)
T ss_pred HHHHHHHHc-CCCEeCCCCCHHHHHHHHHCC
Confidence 678888888 899999999999999998877
>TIGR01182 eda Entner-Doudoroff aldolase
Back Show alignment and domain information
Probab=86.20 E-value=1.2 Score=26.41 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=27.5
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+++. |+++.-...|+.|+.+|-+.|
T Consensus 92 ~v~~~~~~~-~i~~iPG~~TptEi~~A~~~G 121 (204)
T TIGR01182 92 ELAKHAQDH-GIPIIPGVATPSEIMLALELG 121 (204)
T ss_pred HHHHHHHHc-CCcEECCCCCHHHHHHHHHCC
Confidence 778889998 899999999999999998887
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Back Show alignment and domain information
Probab=85.40 E-value=1.3 Score=26.26 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+++. |+++.-...++.|+.+|.+.|
T Consensus 100 ~v~~~~~~~-~i~~iPG~~T~~E~~~A~~~G 129 (213)
T PRK06552 100 ETAKICNLY-QIPYLPGCMTVTEIVTALEAG 129 (213)
T ss_pred HHHHHHHHc-CCCEECCcCCHHHHHHHHHcC
Confidence 677888888 899999999999999998876
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=85.27 E-value=1 Score=27.07 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.|... |+++.-...++.|+..|-|.|
T Consensus 97 ev~~~a~~~-~ip~~PG~~TptEi~~Ale~G 126 (211)
T COG0800 97 EVAKAANRY-GIPYIPGVATPTEIMAALELG 126 (211)
T ss_pred HHHHHHHhC-CCcccCCCCCHHHHHHHHHcC
Confidence 677888888 899999999999999999887
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif
Back Show alignment and domain information
Probab=82.69 E-value=2.3 Score=22.12 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=24.3
Q ss_pred CEEEecCCCCCCcccHHH--HHHHHHhhhCCCCeEEEEecCHH
Q psy10038 1 MEMITPTLDGLILPGITR--MSILELSHQWNDYKVTERKITMP 41 (51)
Q Consensus 1 ~~~~TP~l~~~~L~GitR--~~ll~~~~~~~g~~v~e~~i~~~ 41 (51)
+++|+.+++. ..-|-. +.+..++... +++++|..|+.+
T Consensus 2 i~vY~ts~~g--~~~~k~~~~~v~~lL~~k-~I~f~eiDI~~d 41 (92)
T cd03030 2 IKVYIASSSG--STEIKKRQQEVLGFLEAK-KIEFEEVDISMN 41 (92)
T ss_pred EEEEEecccc--cHHHHHHHHHHHHHHHHC-CCceEEEecCCC
Confidence 3566665532 222222 2566788888 899999999753
The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Back Show alignment and domain information
Probab=81.80 E-value=3.4 Score=23.64 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=34.1
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+.+.|+.-+.+-.+++.. |++++....+..++.++-++|+
T Consensus 40 ~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~ 80 (243)
T PRK15007 40 NNQIVGFDVDLAQALCKEI-DATCTFSNQAFDSLIPSLKFRR 80 (243)
T ss_pred CCCEEeeeHHHHHHHHHHh-CCcEEEEeCCHHHHhHHHhCCC
Confidence 4678899999999999999 8999998888888877666653
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 51
d2a1ha1 363
Branched-chain aminoacid aminotransferase {Human (
99.55 d1i2ka_ 269
Aminodeoxychorismate lyase {Escherichia coli [TaxI
99.53 d1daaa_ 277
D-aminoacid aminotransferase {Bacillus sp., strain
99.52 d1iyea_ 304
Branched-chain aminoacid aminotransferase {Escheri
99.48 d1wbha1 213
KDPG aldolase {Escherichia coli [TaxId: 562]}
88.32 d1vhca_ 212
Hypothetical protein HI0047 {Haemophilus influenza
88.08 d1lsta_ 238
Lysine-,arginine-,ornithine-binding (LAO) protein
85.96 d1wdna_ 223
Glutamine-binding protein {Escherichia coli [TaxId
85.39 d1mxsa_ 216
KDPG aldolase {Pseudomonas putida [TaxId: 303]}
85.29 d1wa3a1 202
KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
80.64 d1ecfa1 243
Glutamine PRPP amidotransferase, C-terminal domain
80.11
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.55 E-value=2.9e-15 Score=90.08 Aligned_cols=48 Identities=42% Similarity=0.908 Sum_probs=44.5
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCC-CeEEEEecCHHHHhchhhhC
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWND-YKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g-~~v~e~~i~~~~l~~ade~~ 50 (51)
+++|||++.++|+||||+.|+++|+++ | ++|+|++|+++||.+|.++|
T Consensus 253 ~l~tppl~~~ILpGITR~~Viela~~~-g~i~V~Er~i~~~eL~~A~~~~ 301 (363)
T d2a1ha1 253 ELVTPPLNGVILPGVVRQSLLDMAQTW-GEFRVVERTITMKQLLRALEEG 301 (363)
T ss_dssp EEEECCCSSSSCCCHHHHHHHHHHHHH-TSSEEEECCCBHHHHHHHHHTT
T ss_pred EEEeccccccccCchHHHHHHHHHHHc-CCCceeecCCCHHHHHhHhhcC
Confidence 479999999999999999999999998 6 99999999999999996554
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=4.9e-15 Score=85.25 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.+++++++. |++|+|+.++++||.+|||.
T Consensus 186 ~~~TP~~~~~~L~GitR~~li~l~~~~-g~~v~e~~i~~~dL~~adE~ 232 (269)
T d1i2ka_ 186 VVYTPRLDQAGVNGIMRQFCIRLLAQS-SYQLVEVQASLEESLQADEM 232 (269)
T ss_dssp EEEEECCSSSSBCCHHHHHHHHHHHHS-SSEEEEECCBHHHHHTCSEE
T ss_pred EEEEeecccccccchHHHHHHHHHHHc-CCeEEEEECCHHHHHhcchh
Confidence 589999999999999999999999999 89999999999999999974
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]
Probab=99.52 E-value=3.7e-15 Score=85.68 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+++|||++.++|+||||+.++++|++. |++|+|+.++++||.+|||.
T Consensus 190 ~~~tPp~~~giL~GitR~~v~~la~~~-g~~v~e~~i~~~dL~~adEv 236 (277)
T d1daaa_ 190 ILYTHPANNMILKGITRDVVIACANEI-NMPVKEIPFTTHEALKMDEL 236 (277)
T ss_dssp EEEECCSSTTSCCCHHHHHHHHHHHHT-TCCEECCCCBHHHHHTCSEE
T ss_pred EEEecCCccccccCHhHhhhhhhhhhc-cccceEeeCCHHHHHhCccc
Confidence 589999999999999999999999999 89999999999999999973
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=5e-15 Score=86.49 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=44.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.|++++++. |++|+|+++++++|.+|||.
T Consensus 203 ~l~TP~~~~~iL~GItR~~vi~~~~~~-gi~v~e~~i~~~~L~~AdEv 249 (304)
T d1iyea_ 203 VLFTPPFTSSALPGITRDAIIKLAKEL-GIEVREQVLSRESLYLADEV 249 (304)
T ss_dssp EEEECCGGGTCCCCHHHHHHHHHHHHT-TCCEEECCCBTTHHHHCSEE
T ss_pred EEEEeecccccCCchHHHHHHHHhhhc-ccceeeccCCHHHHHhhCHH
Confidence 589999999999999999999999999 89999999999999999974
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.45 Score=26.09 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=27.6
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+.+. ++++.-...|+.|+..|-+.|
T Consensus 99 ~v~~~a~~~-~i~~iPGv~TpsEi~~A~~~G 128 (213)
T d1wbha1 99 PLLKAATEG-TIPLIPGISTVSELMLGMDYG 128 (213)
T ss_dssp HHHHHHHHS-SSCEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCCccCCcCCHHHHHHHHHCC
Confidence 678889988 899999999999999999887
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]
Probab=88.08 E-value=0.31 Score=26.71 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=27.5
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+.+. ++++.-...|+.|+.+|-+.|
T Consensus 98 ~v~~~a~~~-~i~~iPGv~TpsEi~~A~~~G 127 (212)
T d1vhca_ 98 KIVKLCQDL-NFPITPGVNNPMAIEIALEMG 127 (212)
T ss_dssp HHHHHHHHT-TCCEECEECSHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCCccCCcCCHHHHHHHHHCC
Confidence 678889988 899999999999999999887
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Lysine-,arginine-,ornithine-binding (LAO) protein
species: Salmonella typhimurium [TaxId: 90371]
Probab=85.96 E-value=0.65 Score=23.93 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=33.6
Q ss_pred CCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 9 DGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+|-+.|+.-+.+.++++.+ |++++...++......+-++|
T Consensus 22 ~~G~~~G~~~dl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g 62 (238)
T d1lsta_ 22 AKGEFIGFDIDLGNEMCKRM-QVKCTWVASDFDALIPSLKAK 62 (238)
T ss_dssp TTCCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTT
T ss_pred CCCCEEEhHHHHHHHHHHHh-CCceEEeechHHHHHHHHHhc
Confidence 35678899999999999999 899999998887766555544
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Glutamine-binding protein
species: Escherichia coli [TaxId: 562]
Probab=85.39 E-value=0.46 Score=24.43 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=33.4
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+-+.|+.-+.+-++++.. |++++....+...+..+=++|
T Consensus 18 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g 57 (223)
T d1wdna_ 18 GDLYVGFDVDLWAAIAKEL-KLDYELKPMDFSGIIPALQTK 57 (223)
T ss_dssp TTEEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTT
T ss_pred CCeEEEHHHHHHHHHHHHh-CCcEEEEecCHHHHHhhhhhc
Confidence 5678899999999999999 899999988888776665555
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]
Probab=85.29 E-value=0.5 Score=25.97 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+++.+.+. |+++.-...|+.|+..|-+.|
T Consensus 100 ~~v~~~a~~~-~i~~iPGv~TpsEi~~A~~~G 130 (216)
T d1mxsa_ 100 EDILEAGVDS-EIPLLPGISTPSEIMMGYALG 130 (216)
T ss_dssp HHHHHHHHHC-SSCEECEECSHHHHHHHHTTT
T ss_pred HHHHHHHHhc-CCCccCCcCCHHHHHHHHHCC
Confidence 3678889998 899999999999999998877
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]
Probab=80.64 E-value=0.92 Score=24.50 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=26.9
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+.+. ++++.-...++.|+.+|-+.|
T Consensus 94 ~v~~~~~~~-~i~~iPGv~TpsEi~~A~~~G 123 (202)
T d1wa3a1 94 EISQFCKEK-GVFYMPGVMTPTELVKAMKLG 123 (202)
T ss_dssp HHHHHHHHH-TCEEECEECSHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCceeCCcCcHHHHHHHHHCC
Confidence 677888888 899999999999999998877
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase, C-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Glutamine PRPP amidotransferase, C-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=80.11 E-value=0.53 Score=26.37 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.9
Q ss_pred CCCCcccHHHHHHHHHhhhCCCC
Q psy10038 9 DGLILPGITRMSILELSHQWNDY 31 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~ 31 (51)
+++++.|+|.+.+++.+++. |.
T Consensus 117 DDSIVRGtT~k~iv~~L~~~-ga 138 (243)
T d1ecfa1 117 DDSIVRGTTSEQIIEMAREA-GA 138 (243)
T ss_dssp ESCCSSSHHHHHHHHHHHHT-TC
T ss_pred hhHHHhhhhHHHHHHHHHHc-CC
Confidence 78999999999999999998 53
