Psyllid ID: psy10049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccEEHHHHHHccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mkdtldhseslghkvdscivvkhlprlaasynqingdnkaavnwtenrdvwwqdemedastscypewmdaedplfmlytr
Flexible Loop (DISEMBL)
mkdtldhseslghkvdscIVVKHLPRLAASynqingdnkaavNWTENRDVWWQDEMEDAStscypewmdaeDPLFMLYTR
Low Complexity Region (SEG)
MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR
Disordered region (IsUnstruct)
*************KVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLY**
Disordered Region (DISOPRED)
MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR
Disordered Region (DISEMBL)
**********LGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR
Disordered Region (DISPRO)
MKDTLDHSESLGHKVDSCIVVKHLPR**************AVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q9VP61	670	Acetyl-coenzyme A synthet	no	N/A	0.9	0.107	0.52	6e-17
Q9QXG4	701	Acetyl-coenzyme A synthet	yes	N/A	0.962	0.109	0.388	2e-11
Q9NR19	701	Acetyl-coenzyme A synthet	no	N/A	0.962	0.109	0.388	5e-11
Q7NSY7	654	Acetyl-coenzyme A synthet	yes	N/A	0.625	0.076	0.5	5e-10
Q01576	672	Acetyl-coenzyme A synthet	N/A	N/A	0.5	0.059	0.6	4e-09
A8H5P1	650	Acetyl-coenzyme A synthet	yes	N/A	0.475	0.058	0.631	6e-09
A1JIK3	652	Acetyl-coenzyme A synthet	yes	N/A	0.487	0.059	0.615	9e-09
B9DGD6	743	Acetate--CoA ligase ACS,	yes	N/A	0.812	0.087	0.4	1e-08
A6WM52	650	Acetyl-coenzyme A synthet	yes	N/A	0.5	0.061	0.625	2e-08
A3D3E8	650	Acetyl-coenzyme A synthet	yes	N/A	0.5	0.061	0.625	2e-08

>sp|Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase OS=Drosophila melanogaster GN=AcCoAS PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCY 64
           L+  E +GH V+ CIVV HL R+           +  + WT++RD WW +EMED   +CY
Sbjct: 214 LEKVEEMGHSVEKCIVVSHLKRVTPCQPD---HVEEEIPWTDDRDYWWHEEMEDKEPACY 270

Query: 65  PEWMDAEDPLFMLYT 79
           PEWMDAEDPLFMLYT
Sbjct: 271 PEWMDAEDPLFMLYT 285

Activates acetate so that it can be used for lipid synthesis or for energy generation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1

>sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 3   DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDN--------KAAVNWTENRDVWWQD 54
           ++L+     G  V  CIVVKHL R     N     +           + W E  D+WW +
Sbjct: 232 ESLEKCREKGFPVRCCIVVKHLGRAELGMNDSPSQSPPVKRPCPDVQICWNEGVDLWWHE 291

Query: 55  EMEDASTSCYPEWMDAEDPLFMLYT 79
            M+ A   C PEW DAEDPLF+LYT
Sbjct: 292 LMQQAGDECEPEWCDAEDPLFILYT 316

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 8/85 (9%)

Query: 3   DTLDHSESLGHKVDSCIVVKHLPR----LAASYNQINGDNKAA----VNWTENRDVWWQD 54
           + L   +  G  V  CIVVKHL R    +  S +Q     ++     ++W +  D+WW +
Sbjct: 232 EALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPIKRSCPDVQISWNQGIDLWWHE 291

Query: 55  EMEDASTSCYPEWMDAEDPLFMLYT 79
            M++A   C PEW DAEDPLF+LYT
Sbjct: 292 LMQEAGDECEPEWCDAEDPLFILYT 316

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7NSY7|ACSA_CHRVO Acetyl-coenzyme A synthetase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=acsA PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 26  RLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           R    Y + NG      +WT+ RDVWW   +E  S +C PEWM AEDPLF+LYT
Sbjct: 220 RHVVVYQRTNG----GADWTDGRDVWWHKLIEGQSEACEPEWMGAEDPLFILYT 269

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q01576|ACSA_PHYB8 Acetyl-coenzyme A synthetase OS=Phycomyces blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC 33097 / NRRL 1555) GN=facA PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 40  AAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           + V W + RDVWW +EM  A T C PE M AEDPLF+LYT
Sbjct: 239 SPVPWVQGRDVWWHEEMAKARTFCSPEPMSAEDPLFLLYT 278

Phycomyces blakesleeanus (taxid: 4837)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A8H5P1|ACSA_SHEPA Acetyl-coenzyme A synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=acsA PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 27/38 (71%)

Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           +NW E RD+WW   ME AS  C PE M AEDPLF+LYT
Sbjct: 227 INWVEGRDIWWGSLMETASEHCIPEEMGAEDPLFLLYT 264

Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) (taxid: 398579)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A1JIK3|ACSA_YERE8 Acetyl-coenzyme A synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=acs PE=3 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 41  AVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           A  W + RDVWW D ++DAS  C PE M+AEDPLF+LYT
Sbjct: 226 ASYWKDGRDVWWHDLIKDASVDCPPEEMNAEDPLFILYT 264

Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B9DGD6|ACS_ARATH Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCY 64
           LD S   G  V  C+          +Y+      +    W   RDVWWQD +    TSC 
Sbjct: 296 LDQSSKDGVSVGICL----------TYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCE 345

Query: 65  PEWMDAEDPLFMLYT 79
            EW+DAEDPLF+LYT
Sbjct: 346 VEWVDAEDPLFLLYT 360

Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation. May play a limited role in the biosynthesis of lipids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 27/40 (67%)

Query: 40  AAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
             V+W E RDVWW   ME AS  C PE MDAE PLF+LYT
Sbjct: 225 GKVDWVEGRDVWWHSLMETASEYCQPEEMDAEAPLFLLYT 264

Shewanella baltica (strain OS185) (taxid: 402882)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 27/40 (67%)

Query: 40  AAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
             V+W E RDVWW   ME AS  C PE MDAE PLF+LYT
Sbjct: 225 GKVDWVEGRDVWWHSLMETASEYCQPEEMDAEAPLFLLYT 264

Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
237858784	678	acetyl coenzyme A synthase [Acyrthosipho	0.937	0.110	0.523	2e-18
307204654	677	Acetyl-coenzyme A synthetase [Harpegnath	0.962	0.113	0.5	7e-17
24667959	524	acetyl coenzyme A synthase, isoform B [D	0.9	0.137	0.52	9e-17
25012190	524	GM15363p [Drosophila melanogaster]	0.9	0.137	0.52	9e-17
156553304	681	PREDICTED: acetyl-coenzyme A synthetase-	0.95	0.111	0.511	1e-16
195126635	670	GI12200 [Drosophila mojavensis] gi|19391	0.887	0.105	0.539	3e-16
195348483	670	GM22154 [Drosophila sechellia] gi|194122	0.9	0.107	0.533	3e-16
195017084	670	GH16518 [Drosophila grimshawi] gi|193898	0.887	0.105	0.539	4e-16
170062756	668	acetyl-CoA synthetase [Culex quinquefasc	0.937	0.112	0.493	6e-16
195170942	670	GL24594 [Drosophila persimilis] gi|19411	0.9	0.107	0.533	6e-16

>gi|237858784|ref|NP_001153823.1| acetyl coenzyme A synthase [Acyrthosiphon pisum]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 9/84 (10%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAA---------VNWTENRDVWWQDE 55
           +D +++ GH+V +CIVV+HLPRL  S N  NG N +          V WT+ RD WW DE
Sbjct: 211 MDKAKNFGHEVSTCIVVRHLPRLYRSMNTSNGTNGSNSDIIDLHSDVPWTDGRDYWWHDE 270

Query: 56  MEDASTSCYPEWMDAEDPLFMLYT 79
           M+D   SCYP W+ AEDPLFMLYT
Sbjct: 271 MDDVEPSCYPVWVSAEDPLFMLYT 294

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204654|gb|EFN83276.1| Acetyl-coenzyme A synthetase [Harpegnathos saltator]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 9/86 (10%)

Query: 3   DTLDHSESLGHKVDSCIVVKHLPRLA---ASYNQINGDNKAA------VNWTENRDVWWQ 53
           + LD ++  GH+++SCIVV HL RL+      N +NG +         V+W ++RD WW 
Sbjct: 209 EALDKAKKQGHQLESCIVVAHLRRLSCPQGKMNVVNGTSNGGGAMETNVSWDDDRDAWWH 268

Query: 54  DEMEDASTSCYPEWMDAEDPLFMLYT 79
           DEMEDA  SCYP WM AEDPLF+LYT
Sbjct: 269 DEMEDAEASCYPVWMAAEDPLFILYT 294

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667959|ref|NP_524196.2| acetyl coenzyme A synthase, isoform B [Drosophila melanogaster] gi|23094224|gb|AAF51696.3| acetyl coenzyme A synthase, isoform B [Drosophila melanogaster]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCY 64
           L+  E +GH V+ CIVV HL R+           +  + WT++RD WW +EMED   +CY
Sbjct: 68  LEKVEEMGHSVEKCIVVSHLKRVTPCQPD---HVEEEIPWTDDRDYWWHEEMEDKEPACY 124

Query: 65  PEWMDAEDPLFMLYT 79
           PEWMDAEDPLFMLYT
Sbjct: 125 PEWMDAEDPLFMLYT 139

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25012190|gb|AAN71211.1| GM15363p [Drosophila melanogaster]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCY 64
           L+  E +GH V+ CIVV HL R+           +  + WT++RD WW +EMED   +CY
Sbjct: 68  LEKVEEMGHSVEKCIVVSHLKRVTPCQPD---HVEEEIPWTDDRDYWWHEEMEDKEPACY 124

Query: 65  PEWMDAEDPLFMLYT 79
           PEWMDAEDPLFMLYT
Sbjct: 125 PEWMDAEDPLFMLYT 139

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553304|ref|XP_001599652.1| PREDICTED: acetyl-coenzyme A synthetase-like [Nasonia vitripennis]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 14/90 (15%)

Query: 3   DTLDHSESLGHKVDSCIVVKHLPRLAASYNQ-------------INGDNKAAVNWTENRD 49
           D LD  +  GH+V+SCIVV HL RL+A   +              NGD++  V W ++RD
Sbjct: 209 DALDKVKKHGHQVESCIVVSHLRRLSAPQGKNETPHANGATNGNSNGDSQQ-VPWDDDRD 267

Query: 50  VWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
            WW DEMEDA  SCYP WM+AEDPLF+LYT
Sbjct: 268 AWWHDEMEDAEASCYPVWMNAEDPLFILYT 297

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126635|ref|XP_002007776.1| GI12200 [Drosophila mojavensis] gi|193919385|gb|EDW18252.1| GI12200 [Drosophila mojavensis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 5/76 (6%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASY-NQINGDNKAAVNWTENRDVWWQDEMEDASTSC 63
           L+  E +GH V+ CIVV HL R+     N ++ D    + WT++RD WW +EMED   +C
Sbjct: 214 LEKVEEMGHSVEKCIVVSHLKRVTPCQDNHVDQD----IPWTDDRDYWWHEEMEDKEPAC 269

Query: 64  YPEWMDAEDPLFMLYT 79
           YPEWMDAEDPLFMLYT
Sbjct: 270 YPEWMDAEDPLFMLYT 285

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348483|ref|XP_002040778.1| GM22154 [Drosophila sechellia] gi|194122288|gb|EDW44331.1| GM22154 [Drosophila sechellia]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCY 64
           L+  E +GH V+ CIVV HL R+        G  +  + WT++RD WW +EMED   +CY
Sbjct: 214 LEKVEEMGHSVEKCIVVSHLKRVTPCQP---GHVEEEIPWTDDRDYWWHEEMEDKEPACY 270

Query: 65  PEWMDAEDPLFMLYT 79
           PEWMDAEDPLFMLYT
Sbjct: 271 PEWMDAEDPLFMLYT 285

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195017084|ref|XP_001984534.1| GH16518 [Drosophila grimshawi] gi|193898016|gb|EDV96882.1| GH16518 [Drosophila grimshawi]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 5/76 (6%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASY-NQINGDNKAAVNWTENRDVWWQDEMEDASTSC 63
           L+  E +GH V+ CIVV HL R+     N +  D    + WT++RD WW +EMED   +C
Sbjct: 214 LEKVEEMGHSVEKCIVVSHLKRVTPCQDNHVEQD----IPWTDDRDYWWHEEMEDKEPAC 269

Query: 64  YPEWMDAEDPLFMLYT 79
           YPEWMDAEDPLFMLYT
Sbjct: 270 YPEWMDAEDPLFMLYT 285

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062756|ref|XP_001866807.1| acetyl-CoA synthetase [Culex quinquefasciatus] gi|167880572|gb|EDS43955.1| acetyl-CoA synthetase [Culex quinquefasciatus]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 2/77 (2%)

Query: 3   DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTS 62
           + +  +E +GH+V +C+VV H+ R+    +  +G+      WT++RD WW  EME+A TS
Sbjct: 211 EAMTKAEEMGHRVGTCVVVSHINRVTPGNSAWDGEFDTP--WTDDRDFWWHQEMEEADTS 268

Query: 63  CYPEWMDAEDPLFMLYT 79
           CYPEWM AEDPLFMLYT
Sbjct: 269 CYPEWMAAEDPLFMLYT 285

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195170942|ref|XP_002026270.1| GL24594 [Drosophila persimilis] gi|194111165|gb|EDW33208.1| GL24594 [Drosophila persimilis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 5   LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCY 64
           L+  E LGH V+ CIVV HL R+    +      +  + WT++RD WW +EMED   +CY
Sbjct: 214 LEKVEELGHSVEKCIVVSHLKRVTPCQDN---HVEEEIPWTDDRDYWWHEEMEDKEPACY 270

Query: 65  PEWMDAEDPLFMLYT 79
           PEWMDAEDPLFMLYT
Sbjct: 271 PEWMDAEDPLFMLYT 285

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0012034	670	AcCoAS "Acetyl Coenzyme A synt	0.912	0.108	0.531	1.2e-17
UNIPROTKB|E2R0C6	714	ACSS2 "Uncharacterized protein	0.475	0.053	0.526	2.2e-11
UNIPROTKB|Q5QPH3	714	ACSS2 "Acetyl-coenzyme A synth	0.475	0.053	0.526	4.5e-11
UNIPROTKB|F1NST1	612	ACSS2 "Uncharacterized protein	0.962	0.125	0.435	9.7e-11
UNIPROTKB|E7EWU3	651	ACSS2 "Acetyl-coenzyme A synth	0.962	0.118	0.388	1.1e-10
UNIPROTKB|Q9NR19	701	ACSS2 "Acetyl-coenzyme A synth	0.962	0.109	0.388	1.2e-10
UNIPROTKB|F1S4Y0	701	ACSS2 "Uncharacterized protein	0.962	0.109	0.423	1.2e-10
MGI|MGI:1890410	701	Acss2 "acyl-CoA synthetase sho	0.962	0.109	0.388	1.2e-10
UNIPROTKB|J9P7N4	701	ACSS2 "Uncharacterized protein	0.962	0.109	0.364	1.5e-10
UNIPROTKB|A7YWF1	701	ACSS2 "Uncharacterized protein	0.912	0.104	0.382	2.5e-10

FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 42/79 (53%), Positives = 53/79 (67%)

Query:     3 DT-LDHSESLGHKVDSCIVVKHLPRLAASYNQINGDN-KAAVNWTENRDVWWQDEMEDAS 60
             DT L+  E +GH V+ CIVV HL R+         D+ +  + WT++RD WW +EMED  
Sbjct:   211 DTALEKVEEMGHSVEKCIVVSHLKRVTPC----QPDHVEEEIPWTDDRDYWWHEEMEDKE 266

Query:    61 TSCYPEWMDAEDPLFMLYT 79
              +CYPEWMDAEDPLFMLYT
Sbjct:   267 PACYPEWMDAEDPLFMLYT 285

GO:0003987 "acetate-CoA ligase activity" evidence=ISS;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IMP

UNIPROTKB|E2R0C6 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 138 (53.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 20/38 (52%), Positives = 28/38 (73%)

Query:    42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
             ++W +  D+WW + M++A   C PEW DAEDPLF+LYT
Sbjct:   292 ISWNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYT 329

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
 Identities = 20/38 (52%), Positives = 28/38 (73%)

Query:    42 VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
             ++W +  D+WW + M++A   C PEW DAEDPLF+LYT
Sbjct:   292 ISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYT 329

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=IEA

GO:0019542 "propionate biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1NST1 ACSS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 160 (61.4 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 37/85 (43%), Positives = 47/85 (55%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPR--LAA--SYNQINGDNKAA----VNWTENRDVWWQD 54
             + L  S+  G  +  CIVVKHL R  +AA  + +Q     +      + W    DVWWQD
Sbjct:   143 EALQKSKDKGFPLKKCIVVKHLGREEVAADGACSQSPPLKRLCQDVQIPWDPRMDVWWQD 202

Query:    55 EMEDASTSCYPEWMDAEDPLFMLYT 79
              M  AST C PEW D+ED LF+LYT
Sbjct:   203 LMSGASTECEPEWCDSEDELFILYT 227

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E7EWU3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/85 (38%), Positives = 47/85 (55%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPR----LAASYNQINGDNKAA----VNWTENRDVWWQD 54
             + L   +  G  V  CIVVKHL R    +  S +Q     ++     ++W +  D+WW +
Sbjct:   182 EALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPIKRSCPDVQISWNQGIDLWWHE 241

Query:    55 EMEDASTSCYPEWMDAEDPLFMLYT 79
              M++A   C PEW DAEDPLF+LYT
Sbjct:   242 LMQEAGDECEPEWCDAEDPLFILYT 266

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/85 (38%), Positives = 47/85 (55%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPR----LAASYNQINGDNKAA----VNWTENRDVWWQD 54
             + L   +  G  V  CIVVKHL R    +  S +Q     ++     ++W +  D+WW +
Sbjct:   232 EALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPIKRSCPDVQISWNQGIDLWWHE 291

Query:    55 EMEDASTSCYPEWMDAEDPLFMLYT 79
              M++A   C PEW DAEDPLF+LYT
Sbjct:   292 LMQEAGDECEPEWCDAEDPLFILYT 316

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IC;IDA

GO:0016208 "AMP binding" evidence=IC

GO:0003987 "acetate-CoA ligase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006069 "ethanol oxidation" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 36/85 (42%), Positives = 44/85 (51%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPR--LAASYNQINGDN-KAA-----VNWTENRDVWWQD 54
             + LD     G  V  CIVVKHL R  L +S +       K       ++W    D WW +
Sbjct:   232 EALDKCREKGFPVRCCIVVKHLGRAELGSSDSPSQSPPLKRTCPDMQISWNNGVDFWWHE 291

Query:    55 EMEDASTSCYPEWMDAEDPLFMLYT 79
              M+DA   C PEW DAEDPLF+LYT
Sbjct:   292 LMQDAGDECEPEWCDAEDPLFILYT 316

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/85 (38%), Positives = 42/85 (49%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAA--------VNWTENRDVWWQD 54
             ++L+     G  V  CIVVKHL R     N     +           + W E  D+WW +
Sbjct:   232 ESLEKCREKGFPVRCCIVVKHLGRAELGMNDSPSQSPPVKRPCPDVQICWNEGVDLWWHE 291

Query:    55 EMEDASTSCYPEWMDAEDPLFMLYT 79
              M+ A   C PEW DAEDPLF+LYT
Sbjct:   292 LMQQAGDECEPEWCDAEDPLFILYT 316

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=ISO

GO:0019542 "propionate biosynthetic process" evidence=ISO

UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/85 (36%), Positives = 43/85 (50%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDN--------KAAVNWTENRDVWWQD 54
             + L+     G +V  CIVVKHL R           +           ++W +  D+WW +
Sbjct:   232 EALEKCREKGFRVRCCIVVKHLGRAELGTGDSPSQSPPIKRPCPNVQISWNQGVDLWWHE 291

Query:    55 EMEDASTSCYPEWMDAEDPLFMLYT 79
              M++A   C PEW DAEDPLF+LYT
Sbjct:   292 LMQEAEDECEPEWCDAEDPLFILYT 316

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/89 (38%), Positives = 46/89 (51%)

Query:     3 DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAA------------VNWTENRDV 50
             + L+  +  G  V  CIVVKHL R       + GD+ +             ++W E  D+
Sbjct:   232 EALEKCQEKGFPVKCCIVVKHLGRAEL----VTGDSPSQSPPIKRPCPDVQISWNEGVDL 287

Query:    51 WWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
             WW + M+ A   C PEW DAEDPLF+LYT
Sbjct:   288 WWHELMQKAGDECEPEWCDAEDPLFILYT 316

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4Y7Y7	ACSA_SHEPC	6, ., 2, ., 1, ., 1	0.575	0.5	0.0615	yes	N/A
A3D3E8	ACSA_SHEB5	6, ., 2, ., 1, ., 1	0.625	0.5	0.0615	yes	N/A
Q8ZKF6	ACSA_SALTY	6, ., 2, ., 1, ., 1	0.5789	0.475	0.0582	yes	N/A
Q084J4	ACSA_SHEFN	6, ., 2, ., 1, ., 1	0.5102	0.5625	0.0692	yes	N/A
A1UR36	ACSA_BARBK	6, ., 2, ., 1, ., 1	0.5263	0.475	0.0582	yes	N/A
A0KNI2	ACSA_AERHH	6, ., 2, ., 1, ., 1	0.5263	0.475	0.0586	yes	N/A
Q88DW6	ACSA2_PSEPK	6, ., 2, ., 1, ., 1	0.5789	0.475	0.0590	yes	N/A
A4TS06	ACSA_YERPP	6, ., 2, ., 1, ., 1	0.5897	0.4875	0.0598	yes	N/A
Q0HTY6	ACSA_SHESR	6, ., 2, ., 1, ., 1	0.575	0.5	0.0615	yes	N/A
Q8D1G8	ACSA_YERPE	6, ., 2, ., 1, ., 1	0.5897	0.4875	0.0598	yes	N/A
A6WM52	ACSA_SHEB8	6, ., 2, ., 1, ., 1	0.625	0.5	0.0615	yes	N/A
A4SJM6	ACSA_AERS4	6, ., 2, ., 1, ., 1	0.5526	0.475	0.0586	yes	N/A
A9KY56	ACSA_SHEB9	6, ., 2, ., 1, ., 1	0.6578	0.475	0.0584	yes	N/A
Q1CE37	ACSA_YERPN	6, ., 2, ., 1, ., 1	0.5897	0.4875	0.0598	yes	N/A
Q2NR28	ACSA_SODGM	6, ., 2, ., 1, ., 1	0.5641	0.4875	0.0598	yes	N/A
A1RIK1	ACSA_SHESW	6, ., 2, ., 1, ., 1	0.575	0.5	0.0615	yes	N/A
Q7MGU3	ACSA_VIBVY	6, ., 2, ., 1, ., 1	0.5526	0.475	0.0584	yes	N/A
A8FUF1	ACSA_SHESH	6, ., 2, ., 1, ., 1	0.6052	0.475	0.0584	yes	N/A
A0L576	ACSA_MAGSM	6, ., 2, ., 1, ., 1	0.5581	0.5375	0.0667	yes	N/A
Q9I558	ACSA1_PSEAE	6, ., 2, ., 1, ., 1	0.525	0.5	0.0614	yes	N/A
A1WY97	ACSA_HALHL	6, ., 2, ., 1, ., 1	0.5526	0.475	0.0589	yes	N/A
Q9KV59	ACSA_VIBCH	6, ., 2, ., 1, ., 1	0.5789	0.475	0.0585	yes	N/A
B0TPY4	ACSA_SHEHH	6, ., 2, ., 1, ., 1	0.5789	0.475	0.0584	yes	N/A
Q66FM8	ACSA_YERPS	6, ., 2, ., 1, ., 1	0.5897	0.4875	0.0598	yes	N/A
A1JIK3	ACSA_YERE8	6, ., 2, ., 1, ., 1	0.6153	0.4875	0.0598	yes	N/A
A7FNG1	ACSA_YERP3	6, ., 2, ., 1, ., 1	0.5897	0.4875	0.0598	yes	N/A
A8H5P1	ACSA_SHEPA	6, ., 2, ., 1, ., 1	0.6315	0.475	0.0584	yes	N/A
A0KY83	ACSA_SHESA	6, ., 2, ., 1, ., 1	0.575	0.5	0.0615	yes	N/A
Q8EDK3	ACSA_SHEON	6, ., 2, ., 1, ., 1	0.55	0.5	0.0615	yes	N/A
Q1C0N0	ACSA_YERPA	6, ., 2, ., 1, ., 1	0.5897	0.4875	0.0598	yes	N/A
A3QD52	ACSA_SHELP	6, ., 2, ., 1, ., 1	0.6052	0.475	0.0584	yes	N/A
A1S7C8	ACSA_SHEAM	6, ., 2, ., 1, ., 1	0.575	0.5	0.0615	yes	N/A
Q0HHN4	ACSA_SHESM	6, ., 2, ., 1, ., 1	0.575	0.5	0.0615	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-21
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	9e-20
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-18
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-15
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-08
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	7e-04
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	0.001
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	0.004

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 84.9 bits (211), Expect = 4e-21
 Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 14/79 (17%)

Query: 1   MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS 60
           +K+ +D +      V+  IVVK                   V   E RDVWW D M  AS
Sbjct: 169 LKEIVDEALEKCPSVEKVIVVKRT--------------GGEVPMVEGRDVWWHDLMAKAS 214

Query: 61  TSCYPEWMDAEDPLFMLYT 79
             C PE MDAEDPLF+LYT
Sbjct: 215 PYCEPEPMDAEDPLFILYT 233

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 81.0 bits (201), Expect = 9e-20
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 14/79 (17%)

Query: 1   MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS 60
           +K  +D + +    V+  IVV+                   V+W E RD+WW + +  AS
Sbjct: 189 LKANVDEALANCPSVEKVIVVRR--------------TGGDVDWVEGRDLWWHELVAGAS 234

Query: 61  TSCYPEWMDAEDPLFMLYT 79
             C PE MDAEDPLF+LYT
Sbjct: 235 DECEPEPMDAEDPLFILYT 253

Length = 637

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 15/80 (18%)

Query: 1   MKDTLDHS-ESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDA 59
           +K  +D + E     V+  +VV+                   V W E RDVWW D M  A
Sbjct: 179 LKAIVDEALEKCPVSVEHVLVVRRT----------GNP----VPWVEGRDVWWHDLMAKA 224

Query: 60  STSCYPEWMDAEDPLFMLYT 79
           S  C PE MD+EDPLF+LYT
Sbjct: 225 SAYCEPEPMDSEDPLFILYT 244

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 69.2 bits (169), Expect = 1e-15
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 3   DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTS 62
             LD S   G  V  C+          +Y       +    W E RDVWWQD + +  T 
Sbjct: 217 AALDESAKNGVSVGICL----------TYENQLAMKREDTKWQEGRDVWWQDVVPNYPTK 266

Query: 63  CYPEWMDAEDPLFMLYT 79
           C  EW+DAEDPLF+LYT
Sbjct: 267 CEVEWVDAEDPLFLLYT 283

Length = 666

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 46  ENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
               +W+ + +E AS     E + A+DPLF+LYT
Sbjct: 146 PRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYT 179

Length = 528

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 52  WQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           +   ME AS     EW D ED   + YT
Sbjct: 186 FNALMEQASDEFDIEWTDREDGAILHYT 213

Length = 570

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
            +  E  D+   + +  AS       +D +D  +++YT
Sbjct: 102 GDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYT 139

Length = 412

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 48  RDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           RD+ W + M  A        +++ DPL++LYT
Sbjct: 198 RDLDWAELMAKAR-PVDCVPVESTDPLYILYT 228

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	97.83
KOG1175|consensus	626		97.76
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	97.63
PRK00174	637	acetyl-CoA synthetase; Provisional	97.22
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	96.95
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	96.94
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	96.84
PLN02654	666	acetate-CoA ligase	96.69
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	96.62
PLN03052	728	acetate--CoA ligase; Provisional	95.13
PTZ00237	647	acetyl-CoA synthetase; Provisional	92.2
KOG1180|consensus	678		91.67
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	90.58
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	85.28
PRK06018	542	putative acyl-CoA synthetase; Provisional	83.78
PRK04319	570	acetyl-CoA synthetase; Provisional	83.36
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	81.61
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	81.17
PLN02861	660	long-chain-fatty-acid-CoA ligase	80.54

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=97.83  E-value=3.2e-05  Score=58.18  Aligned_cols=31  Identities=42%  Similarity=0.782  Sum_probs=28.5

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ++|++++...+..++++.++++||+||||||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTS  180 (528)
T COG0365         150 LWYDEAVEKASEKFEFEPLPADDPLFLLYTS  180 (528)
T ss_pred             ccHHHHhhccCCCCCccccCCCCeEEEEeCC
Confidence            7799999888888888889999999999999

>KOG1175|consensus

Probab=97.76  E-value=6.4e-05  Score=57.57  Aligned_cols=32  Identities=41%  Similarity=0.671  Sum_probs=29.6

Q ss_pred             cccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         49 DVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      +++|++.+....+.+++++++++|||||||||
T Consensus       217 d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTS  248 (626)
T KOG1175|consen  217 DLFWSLELKKASPEHPCVPVKAEDPLFILFTS  248 (626)
T ss_pred             cccHHHHhhhcCCCCCceecCccCceEEEecC
Confidence            67899998888888999999999999999998

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=97.63  E-value=0.00026  Score=52.75  Aligned_cols=64  Identities=45%  Similarity=0.821  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCC-CcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049          3 DTLDHSESLGH-KVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         3 ~~l~~a~~~~~-~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..+++++...+ .+++++++++.+.              ...+....+.+|++++.......++..++++||++|+|||
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS  245 (625)
T TIGR02188       181 AIVDEALEKCPVSVEHVLVVRRTGN--------------PVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTS  245 (625)
T ss_pred             HHHHHHHHhCCCCccEEEEEcCCCC--------------CcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecC
Confidence            34555555444 5778888876431              1223234467788887765445666778899999999998

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=97.22  E-value=0.0017  Score=48.70  Aligned_cols=63  Identities=44%  Similarity=0.835  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049          4 TLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         4 ~l~~a~~~~~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .+++++...+.++.++++++.+.              ...+....+..|++++......+++..++++|+++|+|||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  254 (637)
T PRK00174        192 NVDEALANCPSVEKVIVVRRTGG--------------DVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTS  254 (637)
T ss_pred             HHHHHHHhCCCccEEEEEcCCCC--------------CcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECC
Confidence            34444444455677777765331              1222233466788887654444556677899999999998

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=96.95  E-value=0.0048  Score=46.73  Aligned_cols=65  Identities=11%  Similarity=0.097  Sum_probs=37.9

Q ss_pred             HHHHHHhcCCCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhc-CCCCCceeeCCCCcEEEeeeC
Q psy10049          4 TLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDA-STSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         4 ~l~~a~~~~~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .++++....+.++.+|++++.+...           ..... ..++.+|++++... ....+++.++++||++|+|||
T Consensus       208 ~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTS  273 (652)
T TIGR01217       208 KVAEVRKELPTLRAVVHIPYLGPRE-----------TEAPK-IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSS  273 (652)
T ss_pred             HHHHHHhcCCCccEEEEEeCCCCcc-----------ccccc-ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcC
Confidence            3444554445677888887643100           00000 11356788876542 223445677899999999998

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=96.94  E-value=0.0049  Score=46.27  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=24.2

Q ss_pred             ccccHHHHHhhcC-CCCCceeeCCCCcEEEeeeC
Q psy10049         48 RDVWWQDEMEDAS-TSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        48 ~~~~~~~~l~~~~-~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .+.+|.++++... ...+++++++++|+||+|||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTS  241 (628)
T TIGR02316       208 RDVDYAALRTQHEDAQVPVEWLESNEPSYILYTS  241 (628)
T ss_pred             ccccHHHHhhccccCCCCceecCCCCcEEEEECC
Confidence            4567888766532 23455668899999999998

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=96.84  E-value=0.0066  Score=45.71  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=23.7

Q ss_pred             ccccHHHHHhhc-CCCCCceeeCCCCcEEEeeeC
Q psy10049         48 RDVWWQDEMEDA-STSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        48 ~~~~~~~~l~~~-~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ....|++++... .....+..++.+||++|+|||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTS  272 (655)
T PRK03584        239 GALLWEDFLAPAEAAELEFEPVPFDHPLWILYSS  272 (655)
T ss_pred             CcccHHHHhhccccCCCCceecCCCCcEEEEecC
Confidence            356788877632 223455678899999999998

>PLN02654 acetate-CoA ligase

Probab=96.69  E-value=0.0074  Score=45.87  Aligned_cols=34  Identities=62%  Similarity=1.258  Sum_probs=25.5

Q ss_pred             CccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         47 NRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        47 ~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .++.+|++++...+..++++.++++||++|+|||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTS  284 (666)
T PLN02654        251 GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTS  284 (666)
T ss_pred             CCcccHHHHhhcCCCCCCceecCCCCceEEEecC
Confidence            3466788877654434556678899999999998

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=96.62  E-value=0.014  Score=43.72  Aligned_cols=64  Identities=23%  Similarity=0.397  Sum_probs=37.5

Q ss_pred             HHHHHHHhcC-CCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcC-CCCCceeeCCCCcEEEeeeC
Q psy10049          3 DTLDHSESLG-HKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS-TSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         3 ~~l~~a~~~~-~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~dPl~IlYTS   80 (80)
                      +.+++++... +....+|++++...              ........+..|.++..... ...++.+++++||++|+|||
T Consensus       177 ~~~~~~~~~~~~~~~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TS  242 (629)
T PRK10524        177 PLLDEAIALAQHKPRHVLLVDRGLA--------------PMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTS  242 (629)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeCCCC--------------CcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeec
Confidence            3455555432 44667777765221              11122234567887765432 23455667899999999998

>PLN03052 acetate--CoA ligase; Provisional

Probab=95.13  E-value=0.079  Score=41.07  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             cccHHHHHhhcC-----CCCCceeeCCCCcEEEeeeC
Q psy10049         49 DVWWQDEMEDAS-----TSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        49 ~~~~~~~l~~~~-----~~~~~~~~~~~dPl~IlYTS   80 (80)
                      +.+|++++....     ..++++.++++||+||||||
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTS  365 (728)
T PLN03052        329 DMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSS  365 (728)
T ss_pred             CccHHHHHhccccccccccccccccCCCCcEEEEecC
Confidence            567888765431     12334446789999999998

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=92.20  E-value=0.19  Score=38.23  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=22.6

Q ss_pred             cccHHHHHhhc-----CCCCCceeeCCCCcEEEeeeC
Q psy10049         49 DVWWQDEMEDA-----STSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        49 ~~~~~~~l~~~-----~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ...|++++...     ...+++..++++||++|+|||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTS  263 (647)
T PTZ00237        227 TLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTS  263 (647)
T ss_pred             cccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcC
Confidence            45688876531     122445678899999999998

>KOG1180|consensus

Probab=91.67  E-value=0.47  Score=36.82  Aligned_cols=68  Identities=18%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             HHHHHHhcCCCcCeEEEEecCCccccccccccCCCCcccccc--CC-ccccHHHHHhhcCCC-CCceeeCCCCcEEEeee
Q psy10049          4 TLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWT--EN-RDVWWQDEMEDASTS-CYPEWMDAEDPLFMLYT   79 (80)
Q Consensus         4 ~l~~a~~~~~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~-~~~~~~~~~dPl~IlYT   79 (80)
                      .+...++.+..++++|-++-.+...         ...+++..  ++ ..+.|+++++..... .++.+-.++|+.+||||
T Consensus       175 kl~~~l~~~~~vk~II~~d~id~~~---------~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYT  245 (678)
T KOG1180|consen  175 KLKAPLKQAKTVKHIIYFDPIDYDA---------AKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYT  245 (678)
T ss_pred             HHHHHHhccCceeEEEEecCCCCcc---------chhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEc
Confidence            3444445567888988887533210         00122211  11 236799988764332 33333357999999999


Q ss_pred             C
Q psy10049         80 R   80 (80)
Q Consensus        80 S   80 (80)
                      |
T Consensus       246 S  246 (678)
T KOG1180|consen  246 S  246 (678)
T ss_pred             C
Confidence            8

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=90.58  E-value=0.22  Score=33.39  Aligned_cols=31  Identities=16%  Similarity=0.078  Sum_probs=21.4

Q ss_pred             ccHHHHHhhcCCCCCce-eeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPE-WMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~-~~~~~dPl~IlYTS   80 (80)
                      ..|.+.+...+...+++ .++.+|+++|+|||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTs  159 (227)
T TIGR03089       128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGG  159 (227)
T ss_pred             cchhhhhhccCCCCCCCCCCCCCcceeeeccc
Confidence            56777666443434333 56779999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=85.28  E-value=4.3  Score=30.06  Aligned_cols=31  Identities=13%  Similarity=0.090  Sum_probs=21.3

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|+++++......+....+.+++++|+|||
T Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TS  190 (576)
T PRK05620        160 YSYEALLDGRSTVYDWPELDETTAAAICYST  190 (576)
T ss_pred             ccHHHHhhcCCCcCCCCCCCccceeEEEECC
Confidence            4588887654333333346689999999998

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=83.78  E-value=5.1  Score=29.39  Aligned_cols=31  Identities=19%  Similarity=0.166  Sum_probs=20.7

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|++++......+....++.+++++|+|||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  186 (542)
T PRK06018        156 VAYEEWIAEADGDFAWKTFDENTAAGMCYTS  186 (542)
T ss_pred             ccHHHHhccCCcccCcccCCccceeeEEecC
Confidence            4577666554333333456778999999998

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=83.36  E-value=1.5  Score=32.37  Aligned_cols=31  Identities=35%  Similarity=0.474  Sum_probs=22.0

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|.+.+.......+......+++++|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  214 (570)
T PRK04319        184 LDFNALMEQASDEFDIEWTDREDGAILHYTS  214 (570)
T ss_pred             cCHHHHHhhcCCcCCccccCCCCCEEEEeCC
Confidence            4677766554444444556789999999998

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=81.61  E-value=6.7  Score=28.11  Aligned_cols=31  Identities=26%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|.+++..............+++++|+|||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  176 (521)
T PRK06187        146 GEYEELLAAASDTFDFPDIDENDAAAMLYTS  176 (521)
T ss_pred             ccHHHHhhcCCccCCCCCCCccceEEEEECC
Confidence            4576666554433434456688999999998

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=81.17  E-value=8  Score=28.42  Aligned_cols=32  Identities=9%  Similarity=0.049  Sum_probs=20.9

Q ss_pred             cccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         49 DVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .++|+++...............+++++|+|||
T Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TS  185 (539)
T PRK07008        154 LLCYETLVGAQDGDYDWPRFDENQASSLCYTS  185 (539)
T ss_pred             cccHHHHhcccCCCcCcccCCcccceEEEECC
Confidence            35677766543332233345678999999998

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=80.54  E-value=1.9  Score=32.91  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=19.6

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|++++..............+|+++|+|||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTS  229 (660)
T PLN02861        199 FSWEEFSLMGSLDCELPPKQKTDICTIMYTS  229 (660)
T ss_pred             EEHHHHHHhCcccCCCCccCCCceEEEEecC
Confidence            4577766533222222345689999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-08
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		2e-08
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		2e-08
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-08
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		2e-08
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		2e-08
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		3e-08

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 42  VNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	4e-23
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-22
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-06
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-06

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 89.9 bits (224), Expect = 4e-23
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 1   MKDTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDAS 60
            K  +D +      V   +V +               N  +V +   RD+ W  E +   
Sbjct: 205 TKRIVDDALRETPGVRHVLVYRKT-------------NNPSVAFHAPRDLDWATEKKKYK 251

Query: 61  TSCYPEWMDAEDPLFMLYT 79
           T      +D+EDPLF+LYT
Sbjct: 252 TYYPCTPVDSEDPLFLLYT 270

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 88.4 bits (220), Expect = 2e-22
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 16/81 (19%)

Query: 1   MKDTLDH--SESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMED 58
           +K  +D          V+  IV+K                 + ++W E RD+WW+D +E 
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKR--------------TGSDIDWQEGRDLWWRDLIEK 243

Query: 59  ASTSCYPEWMDAEDPLFMLYT 79
           AS    PE M+AEDPLF+LYT
Sbjct: 244 ASPEHQPEAMNAEDPLFILYT 264

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 6/58 (10%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 24  LPRLAASYNQINGDNKAAVNWTENRDVW--WQDEMEDASTSCYPEWMDAEDPLFMLYT 79
           +  +    ++        +   ++ D W  ++  + +AST+ +     +++   + +T
Sbjct: 157 IQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFT 214

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 6   DHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTS--- 62
              + +  +VD          +     ++ GD            + ++ E+E++S     
Sbjct: 165 IAEDDVPEQVDE--AHAECGDIPLKKAKVGGDVLE-------GWIDFRKELEESSPIFER 215

Query: 63  -CYPEWMDAEDPLFMLYT 79
                    ED   + ++
Sbjct: 216 PTGEVSTKNEDICLVYFS 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	97.89
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	97.64
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	92.54
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	88.41
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	87.48
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	86.25
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	83.85
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	81.82
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	80.86

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=97.89  E-value=2.4e-05  Score=58.04  Aligned_cols=65  Identities=28%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             HHHHHHHhcCCCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049          3 DTLDHSESLGHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         3 ~~l~~a~~~~~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..+++++...+.++++|++++.+.             ....+..+++++|++++......+++..++++||+||+|||
T Consensus       207 ~~~~~~~~~~~~~~~vi~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS  271 (663)
T 1ry2_A          207 RIVDDALRETPGVRHVLVYRKTNN-------------PSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS  271 (663)
T ss_dssp             HHHHHHTTSCTTCCEEEEECSSCC-------------SSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEEC
T ss_pred             HHHHHHHHhCCCCceEEEEecCCC-------------CccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEecc
Confidence            446666655566788888876431             01223334567899888755444566678899999999998

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=97.64  E-value=0.00015  Score=53.52  Aligned_cols=64  Identities=42%  Similarity=0.792  Sum_probs=41.7

Q ss_pred             HHHHHHHhcC--CCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049          3 DTLDHSESLG--HKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         3 ~~l~~a~~~~--~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..+++++...  ..++++|++++.+.              ...+..+++++|++++.......++..+.++||+||+|||
T Consensus       200 ~~~~~~~~~~~~~~~~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS  265 (652)
T 1pg4_A          200 KNVDDALKNPNVTSVEHVIVLKRTGS--------------DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTS  265 (652)
T ss_dssp             HHHHHHHTSTTCCSCCEEEEECSSCC--------------CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEEC
T ss_pred             HHHHHHHhcCCcCCCCEEEEEeCCCC--------------cccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEecc
Confidence            4456665443  24678888876431              1223334567899888765444555667899999999998

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=92.54  E-value=0.47  Score=34.26  Aligned_cols=31  Identities=13%  Similarity=0.153  Sum_probs=21.6

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|++++...+...+......+++++|+|||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  215 (570)
T 3c5e_A          185 LNFKKLLNEASTTHHCVETGSQEASAIYFTS  215 (570)
T ss_dssp             EEHHHHHHHSCSCCCCCCCBTTSEEEEEECC
T ss_pred             ccHHHHhhcccccccccCCCCCCcEEEEECC
Confidence            4577776654433333456689999999998

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=88.41  E-value=1  Score=32.63  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=22.0

Q ss_pred             cccHHHHHhhcCCCCC-c---eeeCCCCcEEEeeeC
Q psy10049         49 DVWWQDEMEDASTSCY-P---EWMDAEDPLFMLYTR   80 (80)
Q Consensus        49 ~~~~~~~l~~~~~~~~-~---~~~~~~dPl~IlYTS   80 (80)
                      +..|.+.+........ +   .....+|+++|+|||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  234 (580)
T 3etc_A          199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSS  234 (580)
T ss_dssp             CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEEC
T ss_pred             cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeC
Confidence            4567777766544332 2   246789999999998

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=87.48  E-value=0.54  Score=33.37  Aligned_cols=29  Identities=21%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             HHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         52 WQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        52 ~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      |.+.+.......+......+|+++|+|||
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  179 (517)
T 3r44_A          151 LAERLRSAAADEPAVECGGDDNLFIMYTS  179 (517)
T ss_dssp             HHHHHHHCCCCCCCCCCCTTSEEEEEEEC
T ss_pred             HHHHhhccCcCCCCCCCCCCCeEEEEECC
Confidence            44555444334444556789999999998

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=86.25  E-value=0.62  Score=32.98  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             cHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         51 WWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        51 ~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .|++++.......+......+|+++|+|||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  192 (529)
T 2v7b_A          163 LFEELIDAAAPAAKAAATGCDDIAFWLYSS  192 (529)
T ss_dssp             BHHHHHHTSCCCSSCCCCCTTSEEEEEEC-
T ss_pred             chhhhhccCCCcccccCCCCCCeEEEEECC
Confidence            477766543333334456789999999998

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=83.85  E-value=0.43  Score=33.99  Aligned_cols=31  Identities=6%  Similarity=0.155  Sum_probs=20.8

Q ss_pred             ccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ..|.++........+......+|+++|+|||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  187 (536)
T 3ni2_A          157 LHFSELTQADENEAPQVDISPDDVVALPYSS  187 (536)
T ss_dssp             EETHHHHTSCGGGCCCCCCCTTSEEECCEEC
T ss_pred             cCHHHHhhccccccccCCCCccCEEEEEcCC
Confidence            4566665543333344456789999999998

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=81.82  E-value=0.94  Score=32.31  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=20.3

Q ss_pred             ccHHHHHhhcCCCCCceeeCC-CCcEEEeeeC
Q psy10049         50 VWWQDEMEDASTSCYPEWMDA-EDPLFMLYTR   80 (80)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~-~dPl~IlYTS   80 (80)
                      ..|.+++.......+...... +++++|+|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  189 (549)
T 3g7s_A          158 NSLSEVMDSGSEDFENVKVNPEEDVALIPYTG  189 (549)
T ss_dssp             SCHHHHHHHSCSCCCCCCCCTTTSEEECCEEC
T ss_pred             cCHHHHHhcCccccccccCCCCCCEEEEEECC
Confidence            457777665444333333444 9999999998

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=80.86  E-value=1.4  Score=32.04  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=18.8

Q ss_pred             HHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         52 WQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        52 ~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      +.+................++++||+|||
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TS  193 (617)
T 3rg2_A          165 LQDAINHPAEDFTATPSPADEVAYFQLSG  193 (617)
T ss_dssp             HHHHHHSCCSSCCCCCCCTTSEEEEEECC
T ss_pred             hhhhhcccccccCCCCCCCCCeEEEEECC
Confidence            44444433333344456789999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	9e-07

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 42.3 bits (99), Expect = 9e-07
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 36  GDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYT 79
               + ++W E RD+WW+D +E AS    PE M+AEDPLF+LYT
Sbjct: 217 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYT 260

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	97.6
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	95.27

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=97.60  E-value=9e-05  Score=52.94  Aligned_cols=63  Identities=43%  Similarity=0.792  Sum_probs=45.5

Q ss_pred             HHHHHHhc--CCCcCeEEEEecCCccccccccccCCCCccccccCCccccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049          4 TLDHSESL--GHKVDSCIVVKHLPRLAASYNQINGDNKAAVNWTENRDVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus         4 ~l~~a~~~--~~~~~~vivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      .++.+++.  ...++++|++.+.+.              ...+..+.++.+.+.........+++.++++||++|+|||
T Consensus       197 ~~~~~l~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTS  261 (643)
T d1pg4a_         197 NVDDALKNPNVTSVEHVIVLKRTGS--------------DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTS  261 (643)
T ss_dssp             HHHHHHTSTTCCSCCEEEEECSSCC--------------CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEEC
T ss_pred             hHHHHHhccccccceEEEEeccCCc--------------ccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCC
Confidence            34555543  367788999887542              3444455667788777776667778889999999999998

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.021  Score=39.75  Aligned_cols=32  Identities=41%  Similarity=0.595  Sum_probs=21.7

Q ss_pred             cccHHHHHhhcCCCCCceeeCCCCcEEEeeeC
Q psy10049         49 DVWWQDEMEDASTSCYPEWMDAEDPLFMLYTR   80 (80)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~dPl~IlYTS   80 (80)
                      ...+..............+..++||++|+|||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  248 (640)
T d1ry2a_         217 DLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS  248 (640)
T ss_dssp             EEEHHHHHTTSCSCCCCCCEETTSCCEEEEEC
T ss_pred             cccccccccccccccccCCcccccCCEEEECC
Confidence            34454444444444555667899999999998