Psyllid ID: psy10052

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGV

cccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHccHHcHHHHHHccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHcHHHHHcccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHcc

cccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHcc

MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLedksqepmvRHEAAEALgaigdkssISILEKYAQDPVKEVSETCYLALKRIQFvteedkqkdtgniygsvdptpplddvsdiNKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEglshgsslyRHEIAFVLGqmqnpssipalTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLckfkmipeEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLedksqepmvRHEAAEALgaigdkssISILEKYAQDPVKEVSETCYLALKRIQFvteedkqkdtgniygsvdptpplddvsdiNKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGV

mipeekilligqvlkdsskpLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLedksqepmVRHEAAEALgaigdkssISILEKYAQDPVKEVSETCYLALKRIQfvteedkqkdtgniygsvdptpplddvSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLedksqepmVRHEAAEALgaigdkssISILEKYAQDPVKEVSETCYLALKRIQfvteedkqkdtgniygsvdptpplddvSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGV

******ILLIGQVLKD***PLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMK*******************************I****SISILEKYAQDPVKEVSETCYLALKRIQFVTE*********IY***********VSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQ**********************VRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMK*******************************I****SISILEKYAQDPVKEVSETCYLALKRIQFVTE*********IY***********VSDINKLKEILLNENEDLFMRYKAMFKLRDINSV**********

*IPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGV

**PEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEED*****GNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGV

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		500	2.2.26 [Sep-21-2011]
Q9V9U4		302	Deoxyhypusine hydroxylase	yes	N/A	0.596	0.986	0.595	1e-100
Q297S2		302	Deoxyhypusine hydroxylase	yes	N/A	0.596	0.986	0.598	1e-99
Q5ZIP3		299	Deoxyhypusine hydroxylase	yes	N/A	0.596	0.996	0.536	1e-95
Q66KT3		303	Deoxyhypusine hydroxylase	N/A	N/A	0.576	0.950	0.575	4e-93
Q0VC53		303	Deoxyhypusine hydroxylase	yes	N/A	0.598	0.986	0.54	1e-92
Q5PPJ4		302	Deoxyhypusine hydroxylase	yes	N/A	0.604	1.0	0.518	3e-92
Q99LN9		302	Deoxyhypusine hydroxylase	yes	N/A	0.604	1.0	0.521	2e-91
Q9BU89		302	Deoxyhypusine hydroxylase	yes	N/A	0.602	0.996	0.528	3e-90
Q7ZUX6		305	Deoxyhypusine hydroxylase	yes	N/A	0.598	0.980	0.528	3e-87
Q17949		298	Deoxyhypusine hydroxylase	yes	N/A	0.562	0.942	0.557	6e-83

>sp\|Q9V9U4\|DOHH_DROME Deoxyhypusine hydroxylase OS=Drosophila melanogaster GN=nero PE=2 SV=1	Back alignment and function desciption

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/299 (59%), Positives = 225/299 (75%), Gaps = 1/299 (0%)

Query: 1   MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAY 60
           M+ +++I  IG VL +  +PLKERFRALFTLKNIGG  AI+ IS+AF D+SALLKHELAY
Sbjct: 1   MVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAISKAFDDDSALLKHELAY 60

Query: 61  CLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSE 120
           CLGQM+D+ A DIL +VL+D +QEPMVRHEAAEA+GAIG    + ILE+Y QDPV EV+E
Sbjct: 61  CLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPDVLPILEEYKQDPVVEVAE 120

Query: 121 TCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180
           TC +AL R++++    K  D+ N Y SVDP+PP      + +LK I L+  + LF RY+A
Sbjct: 121 TCAIALDRVRWLQSGQKVDDS-NPYASVDPSPPTAGDKSVTELKAIYLDAQQSLFDRYRA 179

Query: 181 MFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMV 240
           MF LR++ + ES LA+ EGL   S+L+RHE+AFVLGQ+Q P SIP L   LED+ +NEMV
Sbjct: 180 MFSLRNLRTEESVLAIAEGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMV 239

Query: 241 RHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF 299
           RHECAEALGAIAT +C  +L +Y  D+K VV++SC IALDMC+YENS E QYAD L K 
Sbjct: 240 RHECAEALGAIATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYADGLAKL 298

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor (By similarity). Essential for organismal viability and plays a role in a wide number of important processes such as cell growth and proliferation, and regulates induction of autophagy and protein synthesis. Has a role in eIF-5A-mediated translational control.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: 2EC: 9

>sp\|Q297S2\|DOHH_DROPS Deoxyhypusine hydroxylase OS=Drosophila pseudoobscura pseudoobscura GN=nero PE=3 SV=1	Back alignment and function description

>sp\|Q5ZIP3\|DOHH_CHICK Deoxyhypusine hydroxylase OS=Gallus gallus GN=DOHH PE=2 SV=1	Back alignment and function description

>sp\|Q66KT3\|DOHH_XENLA Deoxyhypusine hydroxylase OS=Xenopus laevis GN=dohh PE=2 SV=1	Back alignment and function description

>sp\|Q0VC53\|DOHH_BOVIN Deoxyhypusine hydroxylase OS=Bos taurus GN=DOHH PE=1 SV=1	Back alignment and function description

>sp\|Q5PPJ4\|DOHH_RAT Deoxyhypusine hydroxylase OS=Rattus norvegicus GN=Dohh PE=2 SV=1	Back alignment and function description

>sp\|Q99LN9\|DOHH_MOUSE Deoxyhypusine hydroxylase OS=Mus musculus GN=Dohh PE=2 SV=2	Back alignment and function description

>sp\|Q9BU89\|DOHH_HUMAN Deoxyhypusine hydroxylase OS=Homo sapiens GN=DOHH PE=1 SV=1	Back alignment and function description

>sp\|Q7ZUX6\|DOHH_DANRE Deoxyhypusine hydroxylase OS=Danio rerio GN=dohh PE=2 SV=1	Back alignment and function description

>sp\|Q17949\|DOHH_CAEEL Deoxyhypusine hydroxylase OS=Caenorhabditis elegans GN=tag-242 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		500
322790237		304	hypothetical protein SINV_07499 [Solenop	0.59	0.970	0.646	1e-108
307180255		303	Deoxyhypusine hydroxylase [Camponotus fl	0.59	0.973	0.639	1e-105
332019438		304	Deoxyhypusine hydroxylase [Acromyrmex ec	0.59	0.970	0.629	1e-104
110748736		303	PREDICTED: deoxyhypusine hydroxylase-lik	0.592	0.976	0.634	1e-102
156537815		305	PREDICTED: deoxyhypusine hydroxylase-lik	0.592	0.970	0.623	1e-102
350425753		303	PREDICTED: deoxyhypusine hydroxylase-lik	0.592	0.976	0.630	1e-102
380013564		303	PREDICTED: deoxyhypusine hydroxylase-lik	0.592	0.976	0.627	1e-101
383863428		305	PREDICTED: deoxyhypusine hydroxylase-lik	0.592	0.970	0.616	1e-101
340716704		303	PREDICTED: deoxyhypusine hydroxylase-lik	0.592	0.976	0.624	1e-101
195113287		302	GI10655 [Drosophila mojavensis] gi\|19391	0.596	0.986	0.605	1e-100

>gi\|322790237\|gb\|EFZ15236.1\| hypothetical protein SINV_07499 [Solenopsis invicta]	Back alignment and taxonomy information

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/297 (64%), Positives = 231/297 (77%), Gaps = 2/297 (0%)

Query: 4   EEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLG 63
           E  IL IG VL DS++PLKERFRALFTLKNIGG TAI  I   F D SALLKHELAYCLG
Sbjct: 6   ESDILAIGGVLNDSARPLKERFRALFTLKNIGGATAIDQIHACFKDPSALLKHELAYCLG 65

Query: 64  QMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCY 123
           QM+D  A  IL  VLED SQEPMVRHEA EALGAIGD S I +LEKY +DPV EV+ETC 
Sbjct: 66  QMRDPAAISILTSVLEDLSQEPMVRHEAGEALGAIGDTSVIPLLEKYCKDPVPEVAETCE 125

Query: 124 LALKRIQFVTEEDKQKD-TGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMF 182
           LAL R++++   D  KD   N Y ++DP PP   ++D++ LK+ILLNE++ LF RY+AMF
Sbjct: 126 LALNRLRWLNSNDNDKDLQSNPYSTIDPAPPA-KITDVSVLKDILLNESKSLFDRYRAMF 184

Query: 183 KLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRH 242
            LR++ + ES LAL EGL  GS+L++HE+AFVLGQ+QN +S+P L ++LED  +NEMVRH
Sbjct: 185 SLRNLGTTESILALAEGLKTGSALFKHEVAFVLGQLQNEASVPGLQASLEDTEENEMVRH 244

Query: 243 ECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKF 299
           ECAEALG+IATPECY++L +YL+D K VV +SC IALDMCDYENS E QYADTL K 
Sbjct: 245 ECAEALGSIATPECYEILNRYLNDSKRVVHESCVIALDMCDYENSAEFQYADTLTKL 301

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307180255\|gb\|EFN68288.1\| Deoxyhypusine hydroxylase [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|332019438\|gb\|EGI59922.1\| Deoxyhypusine hydroxylase [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|110748736\|ref\|XP_394239.3\| PREDICTED: deoxyhypusine hydroxylase-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|156537815\|ref\|XP_001608071.1\| PREDICTED: deoxyhypusine hydroxylase-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|350425753\|ref\|XP_003494221.1\| PREDICTED: deoxyhypusine hydroxylase-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|380013564\|ref\|XP_003690823.1\| PREDICTED: deoxyhypusine hydroxylase-like [Apis florea]	Back alignment and taxonomy information

>gi\|383863428\|ref\|XP_003707183.1\| PREDICTED: deoxyhypusine hydroxylase-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340716704\|ref\|XP_003396835.1\| PREDICTED: deoxyhypusine hydroxylase-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|195113287\|ref\|XP_002001199.1\| GI10655 [Drosophila mojavensis] gi\|193917793\|gb\|EDW16660.1\| GI10655 [Drosophila mojavensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		500
FB\|FBgn0261479		302	nero "nero" [Drosophila melano	0.594	0.983	0.597	3.5e-91
UNIPROTKB\|Q297S2		302	nero "Deoxyhypusine hydroxylas	0.594	0.983	0.600	1.5e-90
UNIPROTKB\|Q5ZIP3		299	DOHH "Deoxyhypusine hydroxylas	0.596	0.996	0.536	3e-85
UNIPROTKB\|Q66KT3		303	dohh "Deoxyhypusine hydroxylas	0.57	0.940	0.581	2.4e-83
UNIPROTKB\|Q0VC53		303	DOHH "Deoxyhypusine hydroxylas	0.59	0.973	0.547	1.2e-81
RGD\|1304783		302	Dohh "deoxyhypusine hydroxylas	0.604	1.0	0.518	3.2e-81
MGI\|MGI:1915964		302	Dohh "deoxyhypusine hydroxylas	0.604	1.0	0.521	8.5e-81
UNIPROTKB\|F1S8E6		303	DOHH "Uncharacterized protein"	0.604	0.996	0.531	1.8e-80
UNIPROTKB\|E2R4Y3		303	DOHH "Uncharacterized protein"	0.59	0.973	0.531	6e-80
UNIPROTKB\|Q9BU89		302	DOHH "Deoxyhypusine hydroxylas	0.602	0.996	0.528	1.2e-79

FB\|FBgn0261479 nero "nero" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 178/298 (59%), Positives = 225/298 (75%)

Query:     1 MIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAY 60
             M+ +++I  IG VL +  +PLKERFRALFTLKNIGG  AI+ IS+AF D+SALLKHELAY
Sbjct:     1 MVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAISKAFDDDSALLKHELAY 60

Query:    61 CLGQMKDSDANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSE 120
             CLGQM+D+ A DIL +VL+D +QEPMVRHEAAEA+GAIG    + ILE+Y QDPV EV+E
Sbjct:    61 CLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPDVLPILEEYKQDPVVEVAE 120

Query:   121 TCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKA 180
             TC +AL R++++    K  D+ N Y SVDP+PP      + +LK I L+  + LF RY+A
Sbjct:   121 TCAIALDRVRWLQSGQKVDDS-NPYASVDPSPPTAGDKSVTELKAIYLDAQQSLFDRYRA 179

Query:   181 MFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMV 240
             MF LR++ + ES LA+ EGL   S+L+RHE+AFVLGQ+Q P SIP L   LED+ +NEMV
Sbjct:   180 MFSLRNLRTEESVLAIAEGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMV 239

Query:   241 RHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCK 298
             RHECAEALGAIAT +C  +L +Y  D+K VV++SC IALDMC+YENS E QYAD L K
Sbjct:   240 RHECAEALGAIATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYADGLAK 297

GO:0007423 "sensory organ development" evidence=IMP

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=IMP

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=ISS

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=ISS

GO:0016049 "cell growth" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB\|Q297S2 nero "Deoxyhypusine hydroxylase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZIP3 DOHH "Deoxyhypusine hydroxylase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q66KT3 dohh "Deoxyhypusine hydroxylase" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0VC53 DOHH "Deoxyhypusine hydroxylase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1304783 Dohh "deoxyhypusine hydroxylase/monooxygenase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1915964 Dohh "deoxyhypusine hydroxylase/monooxygenase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S8E6 DOHH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4Y3 DOHH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BU89 DOHH "Deoxyhypusine hydroxylase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V9U4	DOHH_DROME	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5953	0.596	0.9867	yes	N/A
Q5ZIP3	DOHH_CHICK	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5366	0.596	0.9966	yes	N/A
P47120	DOHH_YEAST	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5134	0.566	0.8707	yes	N/A
Q17949	DOHH_CAEEL	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5578	0.562	0.9429	yes	N/A
Q7ZUX6	DOHH_DANRE	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5280	0.598	0.9803	yes	N/A
Q5PPJ4	DOHH_RAT	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5181	0.604	1.0	yes	N/A
Q9BU89	DOHH_HUMAN	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5280	0.602	0.9966	yes	N/A
Q99LN9	DOHH_MOUSE	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5214	0.604	1.0	yes	N/A
Q0VC53	DOHH_BOVIN	1, ., 1, 4, ., 9, 9, ., 2, 9	0.54	0.598	0.9867	yes	N/A
Q297S2	DOHH_DROPS	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5986	0.596	0.9867	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.99.29	0.824
3rd Layer	1.14.99	0.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		500
COG1413		335	COG1413, COG1413, FOG: HEAT repeat [Energy product	3e-19
COG1413		335	COG1413, COG1413, FOG: HEAT repeat [Energy product	1e-15
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	3e-13
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	9e-13
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	1e-12
COG1413		335	COG1413, COG1413, FOG: HEAT repeat [Energy product	1e-11
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	5e-09
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	8e-09
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	1e-08
smart00567		30	smart00567, EZ_HEAT, E-Z type HEAT repeats	5e-07
smart00567		30	smart00567, EZ_HEAT, E-Z type HEAT repeats	5e-07
smart00567		30	smart00567, EZ_HEAT, E-Z type HEAT repeats	3e-06
smart00567		30	smart00567, EZ_HEAT, E-Z type HEAT repeats	1e-05
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	5e-05
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	5e-05
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	8e-05
pfam03130		27	pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	0.001
pfam03130		27	pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	0.001
smart00567		30	smart00567, EZ_HEAT, E-Z type HEAT repeats	0.002
smart00567		30	smart00567, EZ_HEAT, E-Z type HEAT repeats	0.002
pfam03130		27	pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	0.002

>gnl\|CDD\|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 35/303 (11%)

Query: 12  QVLKDSSKPLKERFRALFTLKNIGGKT---AIQCISEAFADESALLKHELAYCLGQMKDS 68
            VL           +AL  L ++  +    A   + +   DE  L++   A  LG++   
Sbjct: 14  LVLLSYGSEAAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSE 73

Query: 69  DANDILRQVLEDKSQEPMVRHEAAEALGAIGDKSSISILEKYAQ-DPVKEVSETCYLALK 127
           +A  +LR++L D+   P VR  AA+ALG +GD  ++  L +  + D  + V      AL 
Sbjct: 74  EAVPLLRELLSDED--PRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALG 131

Query: 128 RIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI 187
           ++          D   +       P L+ + D +        +   L +R  A   L ++
Sbjct: 132 KL---------GDERAL------DPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176

Query: 188 NSVESTLALTEGLSHGSSLYR--------------HEIAFVLGQMQNPSSIPALTSALED 233
              E+   L E L    +  R               E A +L +  +  S+    +AL  
Sbjct: 177 GDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLA 236

Query: 234 QTQNEMVRHECAEALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVELQYA 293
             +        A A           +L         +   +  + L + D  N+V L+ A
Sbjct: 237 LGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAA 296

Query: 294 DTL 296
             L
Sbjct: 297 LAL 299

Length = 335

>gnl\|CDD\|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats	Back alignment and domain information

>gnl\|CDD\|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats	Back alignment and domain information

>gnl\|CDD\|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats	Back alignment and domain information

>gnl\|CDD\|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|111969 pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|111969 pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats	Back alignment and domain information

>gnl\|CDD\|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats	Back alignment and domain information

>gnl\|CDD\|111969 pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		500
KOG0567\|consensus		289		99.98
PRK09687		280	putative lyase; Provisional	99.97
PRK09687		280	putative lyase; Provisional	99.96
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.95
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.95
KOG0567\|consensus		289		99.95
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.89
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.88
TIGR02270		410	conserved hypothetical protein. Members are found	99.85
TIGR02270		410	conserved hypothetical protein. Members are found	99.85
COG1413		335	FOG: HEAT repeat [Energy production and conversion	99.84
COG1413		335	FOG: HEAT repeat [Energy production and conversion	99.83
KOG0166\|consensus		514		99.78
KOG2171\|consensus		1075		99.73
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.72
KOG0166\|consensus		514		99.72
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.62
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.61
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.59
PTZ00429		746	beta-adaptin; Provisional	99.55
PTZ00429		746	beta-adaptin; Provisional	99.53
KOG2062\|consensus		929		99.47
KOG4224\|consensus		550		99.45
KOG2023\|consensus		885		99.41
KOG4224\|consensus		550		99.4
KOG2023\|consensus		885		99.4
KOG2171\|consensus		1075		99.38
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	99.26
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	99.18
KOG1062\|consensus		866		99.03
KOG1241\|consensus		859		99.01
KOG1241\|consensus		859		99.0
KOG1060\|consensus		968		99.0
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.97
KOG0211\|consensus		759		98.92
KOG2062\|consensus		929		98.92
KOG1060\|consensus		968		98.87
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.86
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.85
COG5116		926	RPN2 26S proteasome regulatory complex component [	98.81
KOG1062\|consensus		866		98.78
KOG2259\|consensus		823		98.77
KOG1242\|consensus		569		98.77
KOG1242\|consensus		569		98.73
KOG1824\|consensus		1233		98.65
KOG0211\|consensus		759		98.63
KOG1059\|consensus		877		98.62
KOG1824\|consensus		1233		98.58
KOG2259\|consensus		823		98.56
KOG0213\|consensus		1172		98.55
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.53
KOG1061\|consensus		734		98.51
KOG1078\|consensus		865		98.5
KOG0213\|consensus		1172		98.46
KOG1058\|consensus		948		98.43
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.42
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	98.34
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	98.33
KOG1078\|consensus		865		98.29
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.27
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.27
COG5116		926	RPN2 26S proteasome regulatory complex component [	98.27
KOG1061\|consensus		734		98.26
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.18
KOG1058\|consensus		948		98.16
KOG1059\|consensus		877		98.15
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	98.15
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.08
KOG0212\|consensus		675		98.08
KOG4535\|consensus		728		98.06
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.05
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	98.04
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	98.03
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.0
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	97.99
KOG1077\|consensus		938		97.97
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.95
KOG0212\|consensus		675		97.95
KOG1943\|consensus		1133		97.91
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.76
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.73
KOG1240\|consensus		1431		97.68
KOG1240\|consensus		1431		97.55
KOG1943\|consensus		1133		97.51
COG5096		757	Vesicle coat complex, various subunits [Intracellu	97.43
KOG2025\|consensus		892		97.24
COG5096		757	Vesicle coat complex, various subunits [Intracellu	97.22
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.07
PF03130		27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	97.05
PF03130		27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	96.99
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.93
KOG0915\|consensus		1702		96.87
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.85
KOG2025\|consensus		892		96.84
smart00567		30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	96.76
KOG1077\|consensus		938		96.74
KOG0915\|consensus		1702		96.73
KOG4413\|consensus		524		96.73
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.71
smart00567		30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	96.7
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.64
KOG4535\|consensus		728		96.63
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.48
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.33
PF06685		249	DUF1186: Protein of unknown function (DUF1186); In	96.24
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.23
KOG2005\|consensus		878		95.94
KOG4413\|consensus		524		95.82
KOG1517\|consensus		1387		95.51
KOG1048\|consensus		717		95.32
KOG1517\|consensus		1387		95.25
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	95.08
KOG2032\|consensus		533		95.01
KOG2956\|consensus		516		94.88
PF06685		249	DUF1186: Protein of unknown function (DUF1186); In	94.77
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	94.49
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.39
PF05004		309	IFRD: Interferon-related developmental regulator (	94.15
KOG0168\|consensus		1051		94.05
KOG0946\|consensus		970		93.98
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	93.9
KOG4653\|consensus		982		93.83
PF11791		154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	93.75
KOG2005\|consensus		878		93.5
KOG0168\|consensus		1051		93.17
PF05004		309	IFRD: Interferon-related developmental regulator (	92.9
KOG1293\|consensus		678		92.9
KOG1048\|consensus		717		92.83
KOG1020\|consensus		1692		92.82
KOG3678\|consensus		832		92.74
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.71
KOG2122\|consensus		2195		92.58
KOG1020\|consensus		1692		92.4
KOG1293\|consensus		678		92.34
KOG2160\|consensus		342		92.29
KOG4500\|consensus		604		92.21
KOG2122\|consensus		2195		92.18
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	92.13
KOG3678\|consensus		832		91.85
KOG2032\|consensus		533		91.7
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	91.47
KOG1820\|consensus		815		91.46
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	91.35
KOG4199\|consensus		461		91.3
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	91.25
KOG2160\|consensus		342		90.93
KOG0414\|consensus		1251		90.55
KOG1820\|consensus		815		90.37
KOG4653\|consensus		982		90.37
cd07064		208	AlkD_like_1 A new structural DNA glycosylase conta	90.27
KOG0414\|consensus		1251		90.03
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.64
KOG1949\|consensus		1005		89.58
PF11791		154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	89.51
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.16
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	89.14
PF07571		92	DUF1546: Protein of unknown function (DUF1546); In	88.19
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	87.93
KOG1949\|consensus		1005		87.57
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	87.46
KOG2956\|consensus		516		87.01
KOG1243\|consensus		690		86.78
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	86.39
KOG4199\|consensus		461		85.72
KOG1243\|consensus		690		85.71
KOG1967\|consensus		1030		84.79
KOG2933\|consensus		334		83.46
COG5098		1128	Chromosome condensation complex Condensin, subunit	82.67
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	82.44
cd00872		171	PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I,	82.34
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	80.94
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	80.2
KOG2973\|consensus		353		80.12

>KOG0567\|consensus	Back alignment and domain information

Probab=99.98  E-value=2.5e-30  Score=222.62  Aligned_cols=283  Identities=57%  Similarity=0.904  Sum_probs=259.6

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHccCCCHHHHHHHHHHHHccCCCccHHHHHHHhhccCCCH
Q psy10052          6 KILLIGQVLKDSSKPLKERFRALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP   85 (500)
Q Consensus         6 ~~~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~L~~~~~d~   85 (500)
                      .++.+.+.|.+.+.+...|+.|+..|...+++..+..+.+.+.|++...+...+++||++++..+++.|...|.|.++.|
T Consensus         4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p   83 (289)
T KOG0567|consen    4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP   83 (289)
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence            68889999998777778999999999999999899999999998899999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCcCCCCCCCCCCCCcccHHHHHH
Q psy10052         86 MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKE  165 (500)
Q Consensus        86 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  165 (500)
                      .||..|+++||.++.+...+.+.++.+||-..|+..|..|+.++.|....... .-..+|.++||+++.. ...+..+..
T Consensus        84 mvRhEAaealga~~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p~~-~ssv~~lr~  161 (289)
T KOG0567|consen   84 MVRHEAAEALGAIGDPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPPAN-LSSVHELRA  161 (289)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCccc-cccHHHHHH
Confidence            99999999999999999999999999999999999999999999986644321 2235788899999853 678999999


Q ss_pred             HhcCCCcCHHHHHHHHHHHHcCCChhhHHHHHhhccCCCHhHHHHHHHHHhccCCCCcHHHHHHHhhccCCCHHHHHHHH
Q psy10052        166 ILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECA  245 (500)
Q Consensus       166 ~l~d~~~~~~~r~~A~~~L~~~~~~~~i~~l~~~L~~~~~~vr~~a~~aL~~~~~~~~i~~L~~~l~~~~~~~~vr~~a~  245 (500)
                      .+.|.+...+.|+.|.+.|+++|..+++..+...+.+++...|+.++..+|++..+.++|.|.+.|.+..++|+||..|+
T Consensus       162 ~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaA  241 (289)
T KOG0567|consen  162 ELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAA  241 (289)
T ss_pred             HHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHH
Confidence            99888888899999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             HHHhhcCCchHHHHHHHhhcCCcHHHHHHHHHHhhhccccchhHh
Q psy10052        246 EALGAIATPECYDVLRKYLSDEKVVVRQSCEIALDMCDYENSVEL  290 (500)
Q Consensus       246 ~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~al~~l~~~~~~~~  290 (500)
                      +|||.++++++++.|.+++.|+.+.||..|..+|..+.+.++..+
T Consensus       242 eALGaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~  286 (289)
T KOG0567|consen  242 EALGAIADEDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF  286 (289)
T ss_pred             HHHHhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999999999987777665443

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG0567\|consensus	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG2062\|consensus	Back alignment and domain information

>KOG4224\|consensus	Back alignment and domain information

>KOG2023\|consensus	Back alignment and domain information

>KOG4224\|consensus	Back alignment and domain information

>KOG2023\|consensus	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1062\|consensus	Back alignment and domain information

>KOG1241\|consensus	Back alignment and domain information

>KOG1241\|consensus	Back alignment and domain information

>KOG1060\|consensus	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0211\|consensus	Back alignment and domain information

>KOG2062\|consensus	Back alignment and domain information

>KOG1060\|consensus	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1062\|consensus	Back alignment and domain information

>KOG2259\|consensus	Back alignment and domain information

>KOG1242\|consensus	Back alignment and domain information

>KOG1242\|consensus	Back alignment and domain information

>KOG1824\|consensus	Back alignment and domain information

>KOG0211\|consensus	Back alignment and domain information

>KOG1059\|consensus	Back alignment and domain information

>KOG1824\|consensus	Back alignment and domain information

>KOG2259\|consensus	Back alignment and domain information

>KOG0213\|consensus	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1061\|consensus	Back alignment and domain information

>KOG1078\|consensus	Back alignment and domain information

>KOG0213\|consensus	Back alignment and domain information

>KOG1058\|consensus	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG1078\|consensus	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1061\|consensus	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1058\|consensus	Back alignment and domain information

>KOG1059\|consensus	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0212\|consensus	Back alignment and domain information

>KOG4535\|consensus	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1077\|consensus	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0212\|consensus	Back alignment and domain information

>KOG1943\|consensus	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1240\|consensus	Back alignment and domain information

>KOG1240\|consensus	Back alignment and domain information

>KOG1943\|consensus	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2025\|consensus	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT	Back alignment and domain information

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0915\|consensus	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG2025\|consensus	Back alignment and domain information

>smart00567 EZ_HEAT E-Z type HEAT repeats	Back alignment and domain information

>KOG1077\|consensus	Back alignment and domain information

>KOG0915\|consensus	Back alignment and domain information

>KOG4413\|consensus	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>smart00567 EZ_HEAT E-Z type HEAT repeats	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG4535\|consensus	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2005\|consensus	Back alignment and domain information

>KOG4413\|consensus	Back alignment and domain information

>KOG1517\|consensus	Back alignment and domain information

>KOG1048\|consensus	Back alignment and domain information

>KOG1517\|consensus	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG2032\|consensus	Back alignment and domain information

>KOG2956\|consensus	Back alignment and domain information

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0168\|consensus	Back alignment and domain information

>KOG0946\|consensus	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG4653\|consensus	Back alignment and domain information

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4	Back alignment and domain information

>KOG2005\|consensus	Back alignment and domain information

>KOG0168\|consensus	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG1293\|consensus	Back alignment and domain information

>KOG1048\|consensus	Back alignment and domain information

>KOG1020\|consensus	Back alignment and domain information

>KOG3678\|consensus	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG2122\|consensus	Back alignment and domain information

>KOG1020\|consensus	Back alignment and domain information

>KOG1293\|consensus	Back alignment and domain information

>KOG2160\|consensus	Back alignment and domain information

>KOG4500\|consensus	Back alignment and domain information

>KOG2122\|consensus	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG3678\|consensus	Back alignment and domain information

>KOG2032\|consensus	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1820\|consensus	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG4199\|consensus	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

>KOG2160\|consensus	Back alignment and domain information

>KOG0414\|consensus	Back alignment and domain information

>KOG1820\|consensus	Back alignment and domain information

>KOG4653\|consensus	Back alignment and domain information

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats	Back alignment and domain information

>KOG0414\|consensus	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG1949\|consensus	Back alignment and domain information

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1949\|consensus	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG2956\|consensus	Back alignment and domain information

>KOG1243\|consensus	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG4199\|consensus	Back alignment and domain information

>KOG1243\|consensus	Back alignment and domain information

>KOG1967\|consensus	Back alignment and domain information

>KOG2933\|consensus	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>KOG2973\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		500
3ltj_A		201	Structure Of A New Family Of Artificial Alpha Helic		3e-08
3ltj_A		201	Structure Of A New Family Of Artificial Alpha Helic		2e-05
3ltm_A		211	Structure Of A New Family Of Artificial Alpha Helic		4e-08
3ltm_A		211	Structure Of A New Family Of Artificial Alpha Helic		1e-05

>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201

Back alignment and structure

Iteration: 1

Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 23/166 (13%) Query: 200 LSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIATPECYDV 259 L S R A+ LG++ + ++ L AL+D+ + VR A+ALG I + Sbjct: 23 LQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGDERAVEP 80 Query: 260 LRKYLSDEKVVVRQSCEIALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSK 319 L K L DE VRQS +AL E +VE L K LKD Sbjct: 81 LIKALKDEDGWVRQSAAVALGQIGDERAVE-----PLIK--------------ALKDEDW 121 Query: 320 PLKERFRALFTLKNIGGKTAIQCISEAFADKSALLKHELAYCLGQM 365 + R A F L IG + A++ + +A D+ ++ A LG++ Sbjct: 122 FV--RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165

PyMOL of 3ltj

>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201

Back alignment and structure

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Back alignment and structure

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		500
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	5e-40
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	3e-39
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	4e-22
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	9e-20
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	1e-16
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	4e-37
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	5e-35
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	2e-29
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	2e-23
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	2e-20
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	3e-20
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	1e-19
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	2e-17
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	8e-17
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	1e-33
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	5e-32
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-27
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	1e-23
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	2e-07
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	8e-07
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	4e-23
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	1e-19
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	2e-19
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	4e-14
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	4e-11
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	5e-10
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	2e-09
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	2e-08
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-08
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-04
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	3e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	4e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	6e-07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-04

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

 Score =  142 bits (360), Expect = 5e-40
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 31/228 (13%)

Query: 26  RALFTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEP 85
           R      +      ++   +   D+S  ++   AY LG++ D  A + L + L+D+  + 
Sbjct: 2   RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DA 59

Query: 86  MVRHEAAEALGAIGDKSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNIY 145
            VR  AA+ALG IGD+ ++  L K  +D    V ++  +AL +I                
Sbjct: 60  WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI---------------- 103

Query: 146 GSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSVESTLALTEGLSHGSS 205
                     D   +  L + L  ++ED F+R  A F L +I    +   L + L     
Sbjct: 104 ---------GDERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDG 152

Query: 206 LYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGAIAT 253
             R   A  LG++       A+    E        R      L    +
Sbjct: 153 WVRQSAADALGEIGGERVRAAMEKLAET--GTGFARKVAVNYLETHKS 198

PyMOL of 3ltj

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		500
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.94
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	99.94
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.94
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	99.94
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	99.9
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	99.9
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	99.9
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	99.89
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	99.89
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	99.88
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.88
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.87
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	99.86
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.86
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	99.86
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	99.86
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	99.85
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	99.84
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.82
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	99.82
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.82
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	99.81
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	99.81
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	99.78
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	99.77
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.77
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.76
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	99.75
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.75
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.74
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.72
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.71
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	99.7
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.66
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.65
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	99.62
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.57
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.56
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.55
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.54
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.53
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.52
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	99.51
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	99.5
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	99.49
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	99.48
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	99.45
3nmz_A		458	APC variant protein; protein-protein complex, arma	99.44
3nmz_A		458	APC variant protein; protein-protein complex, arma	99.44
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	99.37
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	99.32
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	99.31
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	99.27
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	99.26
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	99.19
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	99.13
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	99.07
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	98.92
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	98.92
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	98.89
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	98.85
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.75
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.7
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	98.59
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	98.45
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.39
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.35
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.26
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.24
2x19_B		963	Importin-13; nuclear transport, protein transport;	98.24
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.23
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	98.22
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	98.2
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	98.15
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.06
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	98.05
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	97.96
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	97.8
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.79
3grl_A		651	General vesicular transport factor P115; vesicle t	97.68
3grl_A		651	General vesicular transport factor P115; vesicle t	97.66
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.66
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	97.55
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.51
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	97.49
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	97.46
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	97.41
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.31
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.29
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.11
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.98
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.91
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	96.9
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.63
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	96.01
2b6c_A		220	Hypothetical protein EF3068; structural genomis, D	94.89
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.61
3jxy_A		232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	93.26
2b6c_A		220	Hypothetical protein EF3068; structural genomis, D	92.47
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	92.26
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.44
3jxy_A		232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	90.69
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	90.47
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	90.29
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.32
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	87.87
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	86.87
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	85.37
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	84.3
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	82.97
3ut4_A		134	CTHE_2751, putative uncharacterized protein; non P	82.79

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

Probab=99.94  E-value=2e-25  Score=232.24  Aligned_cols=422  Identities=14%  Similarity=0.155  Sum_probs=288.2

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHccCCCHHHHHHHHHHHHccCC-------CccHH
Q psy10052          8 LLIGQVLKDSSKPLKERFRALFTLKNIGGK--------TAIQCISEAFADESALLKHELAYCLGQMKD-------SDAND   72 (500)
Q Consensus         8 ~~L~~~L~~~~~~~~~R~~A~~~L~~~~~~--------~~~~~L~~~l~~~~~~vR~~a~~~L~~~~~-------~~~~~   72 (500)
                      +.|...+.+++.  .+|..|...|+++...        ..++.+.++..++++.+|..++..++.+..       ...++
T Consensus        90 ~~L~~l~~~~~~--~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~  167 (588)
T 1b3u_A           90 PPLESLATVEET--VVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQ  167 (588)
T ss_dssp             HHHHHHTTSSCH--HHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHhCchH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            334444455554  3777777777776531        123444444456677777777777776532       13355


Q ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcCC--------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhchhccchhhccccCc
Q psy10052         73 ILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTGNI  144 (500)
Q Consensus        73 ~L~~~L~~~~~d~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~~  144 (500)
                      .+..+++|+  ++.||..++++|+.+..        +..+|.|..+++|+++.||..|+.+|+.+.........      
T Consensus       168 ~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~------  239 (588)
T 1b3u_A          168 YFRNLCSDD--TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL------  239 (588)
T ss_dssp             HHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH------
T ss_pred             HHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH------
Confidence            556666776  78888888888887631        24567777777888888888888888877643211000      


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHhcCCCcCHHHHHHHHHHHHcCCC--------hhhHHHHHhhccCCCHhHHHHHHHHHh
Q psy10052        145 YGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINS--------VESTLALTEGLSHGSSLYRHEIAFVLG  216 (500)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~L~~~l~d~~~~~~~r~~A~~~L~~~~~--------~~~i~~l~~~L~~~~~~vr~~a~~aL~  216 (500)
                                 .+..++.+...+.|  .++.+|..++.+++.+..        ...++.+...++|+++.||..++.+++
T Consensus       240 -----------~~~~~~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  306 (588)
T 1b3u_A          240 -----------EALVMPTLRQAAED--KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK  306 (588)
T ss_dssp             -----------HHHTHHHHHHHHTC--SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                       01235556666643  456788888888776543        245677788888888888888888887


Q ss_pred             ccCC------------CCcHHHHHHHhhccCCCHHHHHHHHHHHhhcCC--------chHHHHHHHhhcCCcHHHHHHHH
Q psy10052        217 QMQN------------PSSIPALTSALEDQTQNEMVRHECAEALGAIAT--------PECYDVLRKYLSDEKVVVRQSCE  276 (500)
Q Consensus       217 ~~~~------------~~~i~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~  276 (500)
                      .+..            +..+|.+..++.|  .++.||..++.+|+.+..        +..+|.+..+++|+++.||..++
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~  384 (588)
T 1b3u_A          307 EFCENLSADCRENVIMSQILPCIKELVSD--ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNII  384 (588)
T ss_dssp             HHHHTSCTTTHHHHHHHTHHHHHHHHHTC--SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHHHHhChhhhhhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            6542            2355666677766  468888888888887642        23467777888888888888888


Q ss_pred             HHhhhccccchhHhHHHHhhhccCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhc
Q psy10052        277 IALDMCDYENSVELQYADTLCKFKMIPEEKILLIGQVLKDSSKPLKERFRALFTLKNIG--------GKTAIQCISEAFA  348 (500)
Q Consensus       277 ~al~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~~L~~~~--------~~~~~~~L~~~l~  348 (500)
                      .+++.+........ +          ....++.+.+.+.+  .+|.+|..++..++.+.        .+..++.+..++.
T Consensus       385 ~~l~~l~~~~~~~~-~----------~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  451 (588)
T 1b3u_A          385 SNLDCVNEVIGIRQ-L----------SQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV  451 (588)
T ss_dssp             TTCHHHHHHSCHHH-H----------HHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG
T ss_pred             HHHHHHHHhcCHHH-H----------HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence            88875543211100 0          02235566666655  44889999999887653        2356788889999


Q ss_pred             CCCHHHHHHHHHHHhccCC--------CccHHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHHHHHHHhhc
Q psy10052        349 DKSALLKHELAYCLGQMKD--------SDANDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQ  412 (500)
Q Consensus       349 ~~~~~vr~~a~~aL~~l~~--------~~~~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~  412 (500)
                      |+++.||..++.+++.+..        +..++.|..++.++  ++.+|..++.+++.+..        +..++.|...++
T Consensus       452 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  529 (588)
T 1b3u_A          452 DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG  529 (588)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG
T ss_pred             CCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence            9999999999999987743        24567777777665  79999999999998753        357788999999


Q ss_pred             CCCHhHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhcC
Q psy10052        413 DPVKEVSETCYLALKRIQFVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDIN  488 (500)
Q Consensus       413 d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~g  488 (500)
                      |+++.||..++.+|+.+....+...                 .....++.|.+++.  +.+..+|..|..+++.+.
T Consensus       530 d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          530 DPVANVRFNVAKSLQKIGPILDNST-----------------LQSEVKPILEKLTQ--DQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGSCHHH-----------------HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHHHHHhchhh-----------------hHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhh
Confidence            9999999999999999975321100                 01256677777554  556679999999999875

PyMOL of 1b3u

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*	Back alignment and structure

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		500
d1oyza_		276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-13
d1oyza_		276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-12
d1oyza_		276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	7e-04
d1te4a_		111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	5e-10
d1te4a_		111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	2e-08
d1te4a_		111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	4e-08
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	5e-06
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 69.1 bits (167), Expect = 1e-13
 Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 26/268 (9%)

Query: 29  FTLKNIGGKTAIQCISEAFADESALLKHELAYCLGQMKDSDANDILRQVLEDKSQEPMVR 88
           + L N   K     +     D ++L +   A  L      DA  +  +   DK+   + R
Sbjct: 10  YGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKN--YIRR 67

Query: 89  HEAAEALG------AIGDKSSISILEKYAQDPVKEVSETCYLALKRI------------Q 130
              A  LG         D     +      D    V  T   +  +             +
Sbjct: 68  DIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE 127

Query: 131 FVTEEDKQKDTGNIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDINSV 190
                   K T     +      ++D + I  L  +L + N D+         +   ++ 
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187

Query: 191 ESTLALTEGLSHGSSLYRHEIAFVLGQMQNPSSIPALTSALEDQTQNEMVRHECAEALGA 250
           +      E L   +   R E    L   ++   +  L   L+       V  +  EA G 
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NTVYDDIIEAAGE 243

Query: 251 IATPECYDVLRKYLSDE--KVVVRQSCE 276
           +       VL   L       ++  + +
Sbjct: 244 LGDKTLLPVLDTMLYKFDDNEIITSAID 271

PyMOL of d1oyza_

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		500
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.9
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.87
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.86
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.84
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.76
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.74
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.64
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.61
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.51
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.51
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.47
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.45
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.44
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	99.34
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.33
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	99.29
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.28
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.27
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.18
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.11
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.08
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.06
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	98.81
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.55
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	98.51
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.47
d2b6ca1		213	Hypothetical protein EF3068 {Enterococcus faecalis	92.86
d2b6ca1		213	Hypothetical protein EF3068 {Enterococcus faecalis	92.6
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	85.24
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	83.91
d1l5ja1		160	Aconitase B, N-terminal domain {Escherichia coli [	83.1

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-22  Score=203.54  Aligned_cols=158  Identities=13%  Similarity=0.141  Sum_probs=116.9

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhcCCCHHHHHHHHHHHhccCC--------Ccc
Q psy10052        307 ILLIGQVLKDSSKPLKERFRALFTLKNIG--------GKTAIQCISEAFADKSALLKHELAYCLGQMKD--------SDA  370 (500)
Q Consensus       307 ~~~l~~~l~~~~~~~~~r~~a~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~--------~~~  370 (500)
                      ++.+...+.+.  .|.+|..++..++.+.        .+...+.+..++.|+.+.||.+++++|+.+..        ...
T Consensus       404 l~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i  481 (588)
T d1b3ua_         404 LPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI  481 (588)
T ss_dssp             HHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred             HHHHHHHHhcc--cHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            44566666555  4789999988887542        23456777888999999999999999988732        235


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHhhcCC--------ccHHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhcccccccC
Q psy10052        371 NDILRQVLEDKSQEPMVRHEAAEALGAIGD--------KSSISILEKYAQDPVKEVSETCYLALKRIQFVTEEDKQKDTG  442 (500)
Q Consensus       371 ~~~L~~~l~~~~~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~~~~~~~~~~  442 (500)
                      ++.+.+++.++  ++.+|..++.+++.+..        ...+|.|.++++|+.+.||..++.+|+.+.........    
T Consensus       482 ~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~----  555 (588)
T d1b3ua_         482 IPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----  555 (588)
T ss_dssp             HHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH----
Confidence            67777777776  79999999999988743        45788899999999999999999999999754321110    


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHhcCCccHHHHHHHHHHhHhc
Q psy10052        443 NIYGSVDPTPPLDDVSDINKLKEILLNENEDLFMRYKAMFKLRDI  487 (500)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~r~~a~~al~~~  487 (500)
                                   .....+.|.+++.  |+|..||+.|..||..+
T Consensus       556 -------------~~~i~~~l~~L~~--D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         556 -------------QSEVKPILEKLTQ--DQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             -------------HHHHHHHHHHHTT--CSSHHHHHHHHHHHHHT
T ss_pred             -------------HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence                         1234455566554  45556999999999865

PyMOL of d1b3ua_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure