Psyllid ID: psy1006

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MTMPSMLSMYNETGALSASGTDVHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCEF
cccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
ccccccEEEcccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
mtmpsmlsmynetgalsasgtdvhrTANDILNylndnpslsnsslYNYSILLNGLdnmtfnetllnntyisfdtlypsgyslTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVicippllgwkverhdhqqypkcef
MTMPSMLSMYNETGALSASGTDVHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHqqypkcef
MTMPSMLSMYNETGALSASGTDVHRTANDIlnylndnpslsnsslynysillnGLDNMTFNETLLNNTYISFDTLYPSGYSLTHiviasifviilmiivivgnmlviiAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCEF
*************************TANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVER***********
****SM**MYN***********VHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYI***TLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQ**PKCEF
MTMPSMLSMYNETGALSASGTDVHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHD*********
*TMPSMLSMYNETGALSASGTDVHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVE******Y**C**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
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MTMPSMLSMYNETGALSASGTDVHRTANDILNYLNDNPSLSNSSLYNYSILLNGLDNMTFNETLLNNTYISFDTLYPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
Q90WY6 432 Alpha-2C adrenergic recep yes N/A 0.715 0.395 0.494 8e-43
P35405 469 Alpha-2C adrenergic recep N/A N/A 0.673 0.343 0.518 9e-43
Q28838 452 Alpha-2A adrenergic recep yes N/A 0.723 0.382 0.482 9e-43
Q60474 450 Alpha-2A adrenergic recep yes N/A 0.665 0.353 0.521 9e-43
Q01337 458 Alpha-2C adrenergic recep yes N/A 0.669 0.349 0.496 2e-42
P22086 458 Alpha-2C adrenergic recep yes N/A 0.669 0.349 0.496 2e-42
Q60476 455 Alpha-2C adrenergic recep no N/A 0.669 0.351 0.490 3e-42
P32251 436 Alpha-2 adrenergic recept N/A N/A 0.656 0.360 0.487 2e-41
Q91081 432 Alpha-2 adrenergic recept N/A N/A 0.665 0.368 0.525 2e-41
P18871 450 Alpha-2A adrenergic recep no N/A 0.723 0.384 0.477 3e-41
>sp|Q90WY6|ADA2C_DANRE Alpha-2C adrenergic receptor OS=Danio rerio GN=adra2c PE=2 SV=1 Back     alignment and function desciption
 Score =  173 bits (439), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 120/180 (66%), Gaps = 9/180 (5%)

Query: 66  NNTYISFDTLYPSG-------YSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKN 118
            +TY   D   PSG       YS   I+  +  V  L++  IVGN+LV+IA++T ++LK 
Sbjct: 10  EDTYTDTD-FTPSGNSTNSTSYSPATIIGLAGLVSFLILFTIVGNVLVVIAVLTSRALKP 68

Query: 119 IQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCL 178
            QN F+ SLA AD  +  +I+PFSLANELMGYW FG  WC+I+ A+DVL CT+SI++LC 
Sbjct: 69  PQNLFLVSLASADILVATLIIPFSLANELMGYWFFGEVWCNIYLALDVLFCTSSIVHLCA 128

Query: 179 ISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCE 238
           ISLDRYWS+TQA++Y  KRTP R   MI +VW++SAVI  PPL+       D ++ P C+
Sbjct: 129 ISLDRYWSVTQAVEYNLKRTPRRVKGMIVVVWLISAVISFPPLISMDRNTVDERR-PMCQ 187
Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins. The order of potency for this receptor is dexmedetomidine > norepinephrine > epinephrine.
Danio rerio (taxid: 7955)
>sp|P35405|ADA2C_DIDVI Alpha-2C adrenergic receptor OS=Didelphis virginiana GN=ADRA2C PE=2 SV=2 Back     alignment and function description
>sp|Q28838|ADA2A_BOVIN Alpha-2A adrenergic receptor OS=Bos taurus GN=ADRA2A PE=2 SV=2 Back     alignment and function description
>sp|Q60474|ADA2A_CAVPO Alpha-2A adrenergic receptor OS=Cavia porcellus GN=ADRA2A PE=3 SV=1 Back     alignment and function description
>sp|Q01337|ADA2C_MOUSE Alpha-2C adrenergic receptor OS=Mus musculus GN=Adra2c PE=2 SV=1 Back     alignment and function description
>sp|P22086|ADA2C_RAT Alpha-2C adrenergic receptor OS=Rattus norvegicus GN=Adra2c PE=2 SV=2 Back     alignment and function description
>sp|Q60476|ADA2C_CAVPO Alpha-2C adrenergic receptor OS=Cavia porcellus GN=ADRA2C PE=3 SV=1 Back     alignment and function description
>sp|P32251|ADRA2_CARAU Alpha-2 adrenergic receptor OS=Carassius auratus PE=3 SV=1 Back     alignment and function description
>sp|Q91081|ADRA2_LABOS Alpha-2 adrenergic receptor OS=Labrus ossifagus PE=3 SV=1 Back     alignment and function description
>sp|P18871|ADA2A_PIG Alpha-2A adrenergic receptor OS=Sus scrofa GN=ADRA2A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
328780354 741 PREDICTED: alpha-2B adrenergic receptor- 0.782 0.252 0.685 7e-76
156546140 696 PREDICTED: alpha-2B adrenergic receptor- 0.761 0.261 0.733 1e-75
270014231 531 hypothetical protein TcasGA2_TC011641 [T 0.748 0.337 0.747 2e-75
189241397 555 PREDICTED: similar to CG18208 CG18208-PA 0.748 0.322 0.747 2e-75
332022464 419 Alpha-2C adrenergic receptor [Acromyrmex 0.828 0.472 0.649 4e-74
194764771 708 GF23016 [Drosophila ananassae] gi|190614 0.857 0.289 0.728 7e-74
340726490 709 PREDICTED: alpha-2A adrenergic receptor- 0.782 0.263 0.676 9e-74
195110131 616 GI24627 [Drosophila mojavensis] gi|19391 0.853 0.331 0.718 2e-73
195400110 642 GJ14188 [Drosophila virilis] gi|19414222 0.861 0.320 0.705 2e-73
383860044 668 PREDICTED: alpha-1B adrenergic receptor- 0.782 0.279 0.670 3e-73
>gi|328780354|ref|XP_001122075.2| PREDICTED: alpha-2B adrenergic receptor-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 135/197 (68%), Positives = 165/197 (83%), Gaps = 10/197 (5%)

Query: 52  LNGLDNMTFNETLL--------NNTYISF-DTLYPSGYSLTHIVIASIFVIILMIIVIVG 102
           L+G  N +FNE+LL        N TY+   ++LYPSGY++  IV+AS+ V +LMI+++VG
Sbjct: 221 LDGSFNDSFNESLLFPCNGSLCNETYVVLGESLYPSGYTILQIVLASVLVTLLMIVIVVG 280

Query: 103 NMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHS 162
           NMLVIIAI TEK+LKNIQNWFIASLAVADF +GL+IMPFSLANE+MGYWIFG +WCDI+S
Sbjct: 281 NMLVIIAIATEKALKNIQNWFIASLAVADFFLGLVIMPFSLANEIMGYWIFGYWWCDIYS 340

Query: 163 AMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLL 222
           AMDVLLCTASI+NLCLISLDRYWSITQA+DYLKKRTP RA +MI +VW+LSA++CIPPLL
Sbjct: 341 AMDVLLCTASIMNLCLISLDRYWSITQAVDYLKKRTPARAALMIALVWLLSALVCIPPLL 400

Query: 223 GWKVERHDHQQYPKCEF 239
           GWK      ++YPKC+ 
Sbjct: 401 GWK-RPTPAEEYPKCKL 416

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156546140|ref|XP_001602556.1| PREDICTED: alpha-2B adrenergic receptor-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|270014231|gb|EFA10679.1| hypothetical protein TcasGA2_TC011641 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189241397|ref|XP_969656.2| PREDICTED: similar to CG18208 CG18208-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332022464|gb|EGI62771.1| Alpha-2C adrenergic receptor [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|194764771|ref|XP_001964502.1| GF23016 [Drosophila ananassae] gi|190614774|gb|EDV30298.1| GF23016 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|340726490|ref|XP_003401590.1| PREDICTED: alpha-2A adrenergic receptor-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|195110131|ref|XP_001999635.1| GI24627 [Drosophila mojavensis] gi|193916229|gb|EDW15096.1| GI24627 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195400110|ref|XP_002058661.1| GJ14188 [Drosophila virilis] gi|194142221|gb|EDW58629.1| GJ14188 [Drosophila virilis] Back     alignment and taxonomy information
>gi|383860044|ref|XP_003705501.1| PREDICTED: alpha-1B adrenergic receptor-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
FB|FBgn0038653 699 CG18208 [Drosophila melanogast 0.740 0.253 0.685 5.5e-61
ZFIN|ZDB-GENE-021010-3 432 adra2c "adrenergic, alpha-2C-, 0.539 0.298 0.546 3.5e-36
UNIPROTKB|Q28838 452 ADRA2A "Alpha-2A adrenergic re 0.543 0.287 0.541 7.2e-36
MGI|MGI:87936 458 Adra2c "adrenergic receptor, a 0.535 0.279 0.534 7.2e-36
RGD|2058 458 Adra2c "adrenoceptor alpha 2C" 0.535 0.279 0.534 7.2e-36
UNIPROTKB|F1PAI8 467 ADRA2C "Uncharacterized protei 0.535 0.274 0.527 3.1e-35
UNIPROTKB|D6RGL0 374 ADRA2C "Alpha-2C adrenergic re 0.535 0.342 0.527 4e-35
UNIPROTKB|P18825 462 ADRA2C "Alpha-2C adrenergic re 0.535 0.277 0.527 4e-35
UNIPROTKB|I3LFJ1 460 ADRA2C "Uncharacterized protei 0.535 0.278 0.527 4e-35
UNIPROTKB|P18871 450 ADRA2A "Alpha-2A adrenergic re 0.543 0.288 0.533 6.5e-35
FB|FBgn0038653 CG18208 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 122/178 (68%), Positives = 135/178 (75%)

Query:    61 NETLLNNTYISFDTLYPSGYSLTHXXXXXXXXXXXXXXXXXXXXXXXXAIMTEKSLKNIQ 120
             N T  N+T + +D  YPSGY+LTH                        AI TEKSLKNIQ
Sbjct:    91 NLTNPNHTEVHWDGRYPSGYTLTHIVIASIIVTILMIIIVVGNMLVIIAIATEKSLKNIQ 150

Query:   121 NWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLIS 180
             NWFIASLAVADF +GLIIMPFSLANELMGYWIFGS+WCDIHSAMDVLLCTASI+NLCLIS
Sbjct:   151 NWFIASLAVADFFLGLIIMPFSLANELMGYWIFGSWWCDIHSAMDVLLCTASIMNLCLIS 210

Query:   181 LDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHDHQQYPKCE 238
             LDRYWSIT+A+DYLK RTP RA VMIT VWI+SA+ICIPPLLGWKV+  +    PKCE
Sbjct:   211 LDRYWSITKAVDYLKSRTPARAAVMITAVWIMSALICIPPLLGWKVKMPEGP-LPKCE 267
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA
GO:0004930 "G-protein coupled receptor activity" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
ZFIN|ZDB-GENE-021010-3 adra2c "adrenergic, alpha-2C-, receptor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q28838 ADRA2A "Alpha-2A adrenergic receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:87936 Adra2c "adrenergic receptor, alpha 2c" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2058 Adra2c "adrenoceptor alpha 2C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAI8 ADRA2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D6RGL0 ADRA2C "Alpha-2C adrenergic receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P18825 ADRA2C "Alpha-2C adrenergic receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFJ1 ADRA2C "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P18871 ADRA2A "Alpha-2A adrenergic receptor" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q60474ADA2A_CAVPONo assigned EC number0.52170.66520.3533yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
pfam00001 251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 1e-32
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 7e-12
PHA03087 335 PHA03087, PHA03087, G protein-coupled chemokine re 1e-11
PHA02834 323 PHA02834, PHA02834, chemokine receptor-like protei 4e-06
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  118 bits (298), Expect = 1e-32
 Identities = 44/122 (36%), Positives = 69/122 (56%)

Query: 108 IAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVL 167
           + I+  K L+   N F+ +LAVAD    L + P++L   + G W FG   C +   + V+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 168 LCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVE 227
              ASI+ L  IS+DRY +I   + Y + RTP RA V+I +VW+L+ ++ +PPLL   + 
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 228 RH 229
             
Sbjct: 121 TV 122

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
KOG4219|consensus 423 99.95
PHA03234 338 DNA packaging protein UL33; Provisional 99.93
KOG4220|consensus 503 99.92
PHA02834 323 chemokine receptor-like protein; Provisional 99.91
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.91
PHA03087 335 G protein-coupled chemokine receptor-like protein; 99.9
PHA03235 409 DNA packaging protein UL33; Provisional 99.89
PF00001 257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.89
KOG2087|consensus 363 99.68
PF10320 257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.59
PF10328 274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.37
PF10324 318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.03
PF10323 283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.45
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 98.45
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.36
PF05296 303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.33
PF10316 273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.97
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 97.9
PF10321 313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 97.84
PF10317 292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 97.71
PF02118 275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.41
PF03402 265 V1R: Vomeronasal organ pheromone receptor family, 97.04
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 96.93
PF02117 328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 95.79
PF10326 307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 95.24
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 94.95
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 94.33
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 93.61
PF04789 305 DUF621: Protein of unknown function (DUF621); Inte 93.57
KOG4193|consensus 610 93.31
PF01534 328 Frizzled: Frizzled/Smoothened family membrane regi 93.25
PF03125 365 Sre: C. elegans Sre G protein-coupled chemorecepto 92.3
PF10327 303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 92.18
PF10318 302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 91.86
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 90.81
PF10319 310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 81.58
>KOG4219|consensus Back     alignment and domain information 
Probab=99.95  E-value=7.4e-28  Score=203.63  Aligned_cols=150  Identities=25%  Similarity=0.505  Sum_probs=141.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q psy1006          78 SGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFW  157 (239)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~  157 (239)
                      ...+.+.+.+.++++.++.+++++||++|++++..+|++|+.+|+|++|||+||++++++..++...+.....|.+|..+
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~  107 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY  107 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhcccccc
Q psy1006         158 CDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERH  229 (239)
Q Consensus       158 C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~~  229 (239)
                      |++..|+......+|++++++||+|||.||.||++.+  .++|..+++++.||++|+++++|..+..+.+..
T Consensus       108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~  177 (423)
T KOG4219|consen  108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEEL  177 (423)
T ss_pred             eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEe
Confidence            9999999999999999999999999999999999844  889999999999999999999999887765543

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 2e-23
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 2e-23
2r4s_A 342 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-23
2r4r_A 365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-23
3kj6_A 366 Crystal Structure Of A Methylated Beta2 Adrenergic 2e-23
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-23
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 6e-23
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 9e-23
4gbr_A 309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-22
2y00_B 315 Turkey Beta1 Adrenergic Receptor With Stabilising M 3e-20
2vt4_A 313 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-20
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 1e-19
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 3e-18
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 2e-17
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 2e-17
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 6e-12
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 3e-11
2ziy_A 372 Crystal Structure Of Squid Rhodopsin Length = 372 3e-11
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 7e-11
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 9e-11
3vg9_A 326 Crystal Structure Of Human Adenosine A2a Receptor W 2e-10
4ea3_B 434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-10
3pwh_A 329 Thermostabilised Adenosine A2a Receptor Length = 32 2e-10
2ydo_A 325 Thermostabilised Human A2a Receptor With Adenosine 8e-10
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 1e-09
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 3e-09
2ks9_A 364 Solution Conformation Of Substance P In Water Compl 1e-07
1hll_A32 Nmr Structure Of T3-I2, A 32 Residue Peptide From T 2e-07
1hof_A32 Nmr Structure Of T3-I2, A 32 Residue Peptide From T 7e-07
3oax_A 349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 4e-06
1jfp_A 348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 4e-06
2x72_A 349 Crystal Structure Of The Constitutively Active E113 4e-06
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 5e-06
2j4y_A 349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 5e-06
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 5e-06
3c9m_A 348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 5e-06
4a4m_A 349 Crystal Structure Of The Light-Activated Constituti 5e-06
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 5e-06
1ho9_A32 Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 1e-05
3vw7_A 484 Crystal Structure Of Human Protease-Activated Recep 2e-04
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
           AI   + L+ + N+FI SLA AD  +GL ++PF  A+ LM  W FG+FWC+  +++DVL 
Sbjct: 65  AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 124
Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPL-LGWKVE 227
            TASI  LC+I++DRY++IT    Y    T  +A V+I MVWI+S +    P+ + W   
Sbjct: 125 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY-- 182
Query: 228 RHDHQQYPKC 237
           R  HQ+   C
Sbjct: 183 RATHQEAINC 192
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The Alpha- 2a Adrenergic Receptor Length = 32 Back     alignment and structure
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The Alpha- 2a Adrenergic Receptor Length = 32 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue Peptide From The Alpha 2a Adrenergic Receptor Length = 32 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-73
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-72
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 1e-70
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 2e-66
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 4e-66
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-65
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-65
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-61
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 3e-50
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-37
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 6e-35
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 8e-35
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 8e-34
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 1e-32
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 4e-29
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 2e-13
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
 Score =  230 bits (587), Expect = 1e-73
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 5/180 (2%)

Query: 65  LNNTYISFDTL--YPSGYSLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNW 122
           ++++  S D      S Y    +V   +    L ++ I+GN+LV+++I   + L+ + N+
Sbjct: 1   MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNY 60

Query: 123 FIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLLCTASIINLCLISLD 182
           F+ SLA AD  IG+  M       ++GYW  G   CD+  A+D ++  AS++NL +IS D
Sbjct: 61  FLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 120

Query: 183 RYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKV---ERHDHQQYPKCEF 239
           RY+ +T+ + Y  KRT   A +MI   W+LS ++  P +L W+     R         +F
Sbjct: 121 RYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQF 180
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.96
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.96
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.95
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.95
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.94
2lnl_A 296 C-X-C chemokine receptor type 1; G protein coupled 99.94
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.94
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.94
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.94
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.94
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.94
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.94
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.94
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.94
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.93
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.93
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.93
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.92
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.76
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 95.54
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.96  E-value=1.1e-28  Score=222.37  Aligned_cols=150  Identities=24%  Similarity=0.418  Sum_probs=134.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchh
Q psy1006          81 SLTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSL---KNIQNWFIASLAVADFSIGLIIMPFSLANELM--GYWIFGS  155 (239)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l---~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~--~~~~~~~  155 (239)
                      .....++..+++.+++++|++||+++++++.++|++   ++++|+|++|||++|++++++.+|+.+.....  +.|.+|+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~  107 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD  107 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence            345567888888999999999999999999887654   47899999999999999999999999887654  4599999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccccccC
Q psy1006         156 FWCDIHSAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHD  230 (239)
Q Consensus       156 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~~~  230 (239)
                      .+|++..++..++..+|++++++||+|||+||++|++|++.++++++..+++++|++++++++|++++++.....
T Consensus       108 ~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~  182 (510)
T 4grv_A          108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRS  182 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999988765543
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 3e-14
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.8 bits (167), Expect = 3e-14
 Identities = 37/189 (19%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 52  LNGLDNMTFNETLLNNTYISFDTLYPSGYSLT---HIVIASIFVIILMIIVIVGNMLVII 108
           +NG +   F     N T +         Y L       + + ++ +L+++    N L + 
Sbjct: 1   MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 60

Query: 109 AIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIHSAMDVLL 168
             +  K L+   N+ + +LAVAD  +       +L   L GY++FG   C++      L 
Sbjct: 61  VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120

Query: 169 CTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVER 228
              ++ +L +++++RY  + + +    +     A++ +   W+++     PPL+GW    
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPPLVGWSRYI 179

Query: 229 HDHQQYPKC 237
            +  Q    
Sbjct: 180 PEGMQCSCG 188

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.92
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=177.42  Aligned_cols=148  Identities=20%  Similarity=0.440  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHH
Q psy1006          82 LTHIVIASIFVIILMIIVIVGNMLVIIAIMTEKSLKNIQNWFIASLAVADFSIGLIIMPFSLANELMGYWIFGSFWCDIH  161 (239)
Q Consensus        82 ~~~~~~~~~~~~~i~~~gv~gN~lvl~~~~~~~~l~~~~~~li~~La~~Dll~~~~~~p~~i~~~~~~~~~~~~~~C~~~  161 (239)
                      .+...+.+.++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+...|+..
T Consensus        34 ~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~  113 (348)
T d1u19a_          34 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLE  113 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhh
Confidence            44556777888899999999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhHHHHhHHhhHHHHHHHHHHhhhccccccC
Q psy1006         162 SAMDVLLCTASIINLCLISLDRYWSITQAIDYLKKRTPGRAMVMITMVWILSAVICIPPLLGWKVERHD  230 (239)
Q Consensus       162 ~~~~~~~~~~s~~~l~~isidRy~ai~~P~~y~~~~t~~~~~~~i~~iWl~s~~~~~~~~~~~~~~~~~  230 (239)
                      .++...+..++.++++++++|||.+|++|++|+.. ++++....++++|.+++++..|+.+++.....+
T Consensus       114 ~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (348)
T d1u19a_         114 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPE  181 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEE
T ss_pred             hhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccC
Confidence            99999999999999999999999999999998664 667777888889999999999999887766544