Psyllid ID: psy10117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSSGHAHSLRR
Secondary Structure (PSIPRED)
cEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEEEEEEcccEEEEEEEEccccccccccHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccHHHHHHHHHccccccccccccEEEEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccHHccc
Coil and Loop (DISEMBL)
MKIKILILGPIMAGKTVLANALCdlttaeeyhptqgvrivecehsyaldtskteielwdtsgdhkfesvwpafqrdvhgiifvfnsgvpghisELLLFYDYFVtqsdlnnhkcllidnvkpgrgdssghahslrr
Flexible Loop (DISEMBL)
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCllidnvkpgrgdssghahslrr
Low Complexity Region (SEG)
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSSGHAHSLRR
Disordered region (IsUnstruct)
**IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV****************
Disordered Region (DISOPRED)
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN*****************
Disordered Region (DISEMBL)
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG*************
Disordered Region (DISPRO)
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVK***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSSGHAHSLRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q4R4K5	185	Rab-like protein 5 OS=Mac	N/A	N/A	0.948	0.691	0.480	2e-31
Q9H7X7	185	Rab-like protein 5 OS=Hom	yes	N/A	0.948	0.691	0.480	2e-31
Q5E9J4	185	Rab-like protein 5 OS=Bos	yes	N/A	0.918	0.670	0.496	2e-30
Q9DAI2	185	Rab-like protein 5 OS=Mus	yes	N/A	0.948	0.691	0.465	3e-30
Q5FVJ7	185	Rab-like protein 5 OS=Rat	yes	N/A	0.918	0.670	0.472	7e-30
Q5M8K8	184	Rab-like protein 5 OS=Xen	yes	N/A	0.918	0.673	0.460	8e-29
Q567Y6	187	Rab-like protein 5 OS=Dan	yes	N/A	0.903	0.652	0.472	3e-26
Q39573	206	GTP-binding protein YPTC5	N/A	N/A	0.911	0.597	0.289	7e-08
P36864	205	GTP-binding protein yptV5	N/A	N/A	0.844	0.556	0.302	1e-07
O76173	201	Ras-related protein Rab-1	yes	N/A	0.614	0.412	0.305	3e-07

>sp|Q4R4K5|RABL5_MACFA Rab-like protein 5 OS=Macaca fascicularis GN=RABL5 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQQSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Macaca fascicularis (taxid: 9541)

>sp|Q9H7X7|RABL5_HUMAN Rab-like protein 5 OS=Homo sapiens GN=RABL5 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Homo sapiens (taxid: 9606)

>sp|Q5E9J4|RABL5_BOVIN Rab-like protein 5 OS=Bos taurus GN=RABL5 PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 3/127 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+  +Y  FV Q  L N +CLLI 
Sbjct: 62  WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIETWYSCFVQQQFLQNTQCLLIA 121

Query: 118 NVKPGRG 124
           + KPG G
Sbjct: 122 HHKPGSG 128

Bos taurus (taxid: 9913)

>sp|Q9DAI2|RABL5_MOUSE Rab-like protein 5 OS=Mus musculus GN=Rabl5 PE=2 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L +  C+L+ 
Sbjct: 62  WDCGGDSKFESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVA 121

Query: 118 NVKPGRGDSSG 128
           + KPG G   G
Sbjct: 122 HHKPGSGGERG 132

Mus musculus (taxid: 10090)

>sp|Q5FVJ7|RABL5_RAT Rab-like protein 5 OS=Rattus norvegicus GN=Rabl5 PE=2 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 3/127 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L +  C+L+ 
Sbjct: 62  WDCGGDSKFESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVA 121

Query: 118 NVKPGRG 124
           + KPG G
Sbjct: 122 HHKPGSG 128

Rattus norvegicus (taxid: 10116)

>sp|Q5M8K8|RABL5_XENTR Rab-like protein 5 OS=Xenopus tropicalis GN=rabl5 PE=2 SV=1

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 82/126 (65%), Gaps = 2/126 (1%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTT--AEEYHPTQGVRIVECEHSYALDTSKTEIELWD 59
           K K+L++GP  +GKT+LAN + D T     EY+PTQGVRI+E E       S  E+ELWD
Sbjct: 3   KAKVLVVGPTESGKTILANFISDATETIGGEYNPTQGVRILEFECPNGNKGSSCEVELWD 62

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV 119
             GD KFES WP   +D HG+I VF++ +P H+ E+ +++  F+ +  L  ++CLLI + 
Sbjct: 63  CGGDSKFESCWPVIMKDSHGVIIVFSADIPSHLKEIEMWHLNFIQKQRLQENRCLLIAHK 122

Query: 120 KPGRGD 125
           KPG GD
Sbjct: 123 KPGSGD 128

Xenopus tropicalis (taxid: 8364)

>sp|Q567Y6|RABL5_DANRE Rab-like protein 5 OS=Danio rerio GN=rabl5 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 7/129 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYAL----DTSKTEI 55
           K+KIL++GP   GKT LAN L D T +   +Y PTQGVRI+E E S+ L     +S  ++
Sbjct: 3   KVKILLIGPSECGKTALANFLSDTTESIGADYSPTQGVRILEFE-SHNLHNGNKSSSCDV 61

Query: 56  ELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL 115
           ELWD +GD KFES WPA  +D +G+  VFN  VP H+ E+  +Y  F++   L   +CLL
Sbjct: 62  ELWDCAGDFKFESCWPALMKDSNGVAVVFNPDVPSHLKEIETWYSAFISSQGLLEGQCLL 121

Query: 116 IDNVKPGRG 124
           I + KPG G
Sbjct: 122 IAHHKPGSG 130

Danio rerio (taxid: 7955)

>sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L N        +EY  T G   +  E    +D  K  +++WDT+G
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKE--IEVDDKKVTMQIWDTAG 66

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS---DLNNHKCLLIDNV 119
             +F+S+  AF R     + VF+        +L  + D F+ Q+   D +N   +++ N 
Sbjct: 67  QERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNK 126

Query: 120 KPGRGDSS 127
               G SS
Sbjct: 127 IDENGGSS 134

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P36864|YPTV5_VOLCA GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +KI+ILG    GKT L N        +EY  T G   +  E    +D  K  +++WDT+G
Sbjct: 9   LKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKE--IEVDDKKVTMQIWDTAG 66

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ---SDLNNHKCLLIDN 118
             +F+S+  AF R     + VF+        +L  + D F+ Q   SD +N   +++ N
Sbjct: 67  QERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGN 125

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
           M +KIL++G    GK+ +     D    + Y  T GV    C  +  LD  K ++++WDT
Sbjct: 32  MLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDF--CIRTIELDGKKIKLQIWDT 89

Query: 61  SGDHKFESVWPAFQRDVHGIIFVFN 85
           +G  +F+++  ++ R  HG+I V++
Sbjct: 90  AGQERFKTITTSYYRGAHGLIIVYD 114

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
311251063	185	PREDICTED: rab-like protein 5-like isofo	0.955	0.697	0.484	8e-30
297680108	185	PREDICTED: rab-like protein 5 isoform 1	0.948	0.691	0.480	1e-29
75075729	185	RecName: Full=Rab-like protein 5 gi|6797	0.948	0.691	0.480	1e-29
12232463	185	rab-like protein 5 isoform a [Homo sapie	0.948	0.691	0.480	2e-29
302564797	185	rab-like protein 5 [Macaca mulatta] gi|3	0.948	0.691	0.473	2e-29
221040142	148	unnamed protein product [Homo sapiens]	0.948	0.864	0.480	2e-29
403285795	185	PREDICTED: rab-like protein 5 isoform 1	0.948	0.691	0.480	4e-29
296192323	185	PREDICTED: rab-like protein 5 isoform 1	0.948	0.691	0.480	5e-29
402863104	185	PREDICTED: rab-like protein 5 isoform 1	0.948	0.691	0.473	5e-29
426254751	185	PREDICTED: rab-like protein 5 isoform 1	0.918	0.670	0.496	6e-29

>gi|311251063|ref|XP_003124428.1| PREDICTED: rab-like protein 5-like isoform 1 [Sus scrofa]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 3/132 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EYHPTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYHPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H++E+ ++Y  FV Q  L + +CLLI 
Sbjct: 62  WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLTEIEMWYSCFVQQQFLQDTQCLLIA 121

Query: 118 NVKPGRGDSSGH 129
           + KPG G   G+
Sbjct: 122 HHKPGSGSDKGN 133

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297680108|ref|XP_002817847.1| PREDICTED: rab-like protein 5 isoform 1 [Pongo abelii]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDVTEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|75075729|sp|Q4R4K5.1|RABL5_MACFA RecName: Full=Rab-like protein 5 gi|67971256|dbj|BAE01970.1| unnamed protein product [Macaca fascicularis]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQQSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|12232463|ref|NP_073614.1| rab-like protein 5 isoform a [Homo sapiens] gi|332867843|ref|XP_003318735.1| PREDICTED: uncharacterized protein LOC741533 isoform 2 [Pan troglodytes] gi|397471310|ref|XP_003807239.1| PREDICTED: rab-like protein 5 isoform 1 [Pan paniscus] gi|74733725|sp|Q9H7X7.1|RABL5_HUMAN RecName: Full=Rab-like protein 5 gi|10436496|dbj|BAB14846.1| unnamed protein product [Homo sapiens] gi|14602615|gb|AAH09823.1| RAB, member RAS oncogene family-like 5 [Homo sapiens] gi|119570601|gb|EAW50216.1| RAB, member RAS oncogene family-like 5, isoform CRA_a [Homo sapiens] gi|119570603|gb|EAW50218.1| RAB, member RAS oncogene family-like 5, isoform CRA_a [Homo sapiens] gi|312153284|gb|ADQ33154.1| RAB, member RAS oncogene family-like 5 [synthetic construct] gi|410208962|gb|JAA01700.1| RAB, member RAS oncogene family-like 5 [Pan troglodytes] gi|410293326|gb|JAA25263.1| RAB, member RAS oncogene family-like 5 [Pan troglodytes]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|302564797|ref|NP_001181339.1| rab-like protein 5 [Macaca mulatta] gi|380815660|gb|AFE79704.1| rab-like protein 5 isoform a [Macaca mulatta] gi|383420845|gb|AFH33636.1| rab-like protein 5 isoform a [Macaca mulatta] gi|384948842|gb|AFI38026.1| rab-like protein 5 isoform a [Macaca mulatta]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ +FN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIIFNADIPSHRKEMEMWYSCFVQQQSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221040142|dbj|BAH11834.1| unnamed protein product [Homo sapiens]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403285795|ref|XP_003934196.1| PREDICTED: rab-like protein 5 isoform 1 [Saimiri boliviensis boliviensis]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E  ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDPKFESCWPALMKDAHGVVIVFNADIPSHRKETEMWYSCFVQQQSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296192323|ref|XP_002744009.1| PREDICTED: rab-like protein 5 isoform 1 [Callithrix jacchus]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+      +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPDVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGDPKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQQSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402863104|ref|XP_003895872.1| PREDICTED: rab-like protein 5 isoform 1 [Papio anubis]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  G+ KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct: 62  WDCGGNAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQQSLQDTQCMLIA 121

Query: 118 NVKPGRGDSSG 128
           + KPG GD  G
Sbjct: 122 HHKPGSGDDKG 132

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426254751|ref|XP_004021040.1| PREDICTED: rab-like protein 5 isoform 1 [Ovis aries]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 84/127 (66%), Gaps = 3/127 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
           +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L N +CLLI 
Sbjct: 62  WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQNTQCLLIA 121

Query: 118 NVKPGRG 124
           + KPG G
Sbjct: 122 HHKPGSG 128

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
UNIPROTKB|F1RKG2	185	RABL5 "Uncharacterized protein	0.955	0.697	0.484	6.9e-31
UNIPROTKB|Q9H7X7	185	RABL5 "Rab-like protein 5" [Ho	0.948	0.691	0.480	4.9e-30
UNIPROTKB|E2QTN4	185	RABL5 "Uncharacterized protein	0.955	0.697	0.477	6.2e-30
UNIPROTKB|F6V8Z0	245	RABL5 "Uncharacterized protein	0.955	0.526	0.477	6.2e-30
MGI|MGI:1914536	185	Rabl5 "RAB, member of RAS onco	0.948	0.691	0.465	1.3e-29
UNIPROTKB|F1N5N9	185	RABL5 "Rab-like protein 5" [Bo	0.918	0.670	0.496	1.6e-29
UNIPROTKB|Q5E9J4	185	RABL5 "Rab-like protein 5" [Bo	0.918	0.670	0.496	1.6e-29
RGD|1305370	185	Rabl5 "RAB, member RAS oncogen	0.977	0.713	0.470	1.6e-29
ZFIN|ZDB-GENE-050417-439	187	rabl5 "RAB, member RAS oncogen	0.911	0.657	0.468	5.2e-26
UNIPROTKB|F1NYS6	181	RABL5 "Uncharacterized protein	0.851	0.635	0.428	1.5e-21

UNIPROTKB|F1RKG2 RABL5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 64/132 (48%), Positives = 87/132 (65%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EYHPTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYHPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H++E+ ++Y  FV Q  L + +CLLI 
Sbjct:    62 WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLTEIEMWYSCFVQQQFLQDTQCLLIA 121

Query:   118 NVKPGRGDSSGH 129
             + KPG G   G+
Sbjct:   122 HHKPGSGSDKGN 133

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q9H7X7 RABL5 "Rab-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 63/131 (48%), Positives = 84/131 (64%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY PTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H  E+ ++Y  FV Q  L + +C+LI 
Sbjct:    62 WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIA 121

Query:   118 NVKPGRGDSSG 128
             + KPG GD  G
Sbjct:   122 HHKPGSGDDKG 132

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2QTN4 RABL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/132 (47%), Positives = 86/132 (65%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHITSNTKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L + +CLLI 
Sbjct:    62 WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDTQCLLIA 121

Query:   118 NVKPGRGDSSGH 129
             + KPG G   G+
Sbjct:   122 HHKPGSGSDKGN 133

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F6V8Z0 RABL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/132 (47%), Positives = 86/132 (65%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct:    62 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHITSNTKGTGCEFEL 121

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L + +CLLI 
Sbjct:   122 WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDTQCLLIA 181

Query:   118 NVKPGRGDSSGH 129
             + KPG G   G+
Sbjct:   182 HHKPGSGSDKGN 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:1914536 Rabl5 "RAB, member of RAS oncogene family-like 5" [Mus musculus (taxid:10090)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 61/131 (46%), Positives = 84/131 (64%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L +  C+L+ 
Sbjct:    62 WDCGGDSKFESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVA 121

Query:   118 NVKPGRGDSSG 128
             + KPG G   G
Sbjct:   122 HHKPGSGGERG 132

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N5N9 RABL5 "Rab-like protein 5" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 63/127 (49%), Positives = 83/127 (65%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+  +Y  FV Q  L N +CLLI 
Sbjct:    62 WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIETWYSCFVQQQFLQNTQCLLIA 121

Query:   118 NVKPGRG 124
             + KPG G
Sbjct:   122 HHKPGSG 128

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5E9J4 RABL5 "Rab-like protein 5" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 63/127 (49%), Positives = 83/127 (65%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+  +Y  FV Q  L N +CLLI 
Sbjct:    62 WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIETWYSCFVQQQFLQNTQCLLIA 121

Query:   118 NVKPGRG 124
             + KPG G
Sbjct:   122 HHKPGSG 128

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

RGD|1305370 Rabl5 "RAB, member RAS oncogene family-like 5" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 64/136 (47%), Positives = 87/136 (63%)

Query:     1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
             +K KIL +GP  +GKTVLAN L + +   EY+PTQGVRI+E E+ +    +K    E EL
Sbjct:     2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61

Query:    58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
             WD  GD KFES WPA  +D HG++ VFN+ +P H+ E+ ++Y  FV Q  L +  C+L+ 
Sbjct:    62 WDCGGDSKFESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVA 121

Query:   118 NVKPGRG-DSSGHAHS 132
             + KPG G D S  A S
Sbjct:   122 HHKPGSGGDKSNLALS 137

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

ZFIN|ZDB-GENE-050417-439 rabl5 "RAB, member RAS oncogene family-like 5" [Danio rerio (taxid:7955)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 60/128 (46%), Positives = 81/128 (63%)

Query:     2 KIKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECE-HSY--ALDTSKTEIE 56
             K+KIL++GP   GKT LAN L D T +   +Y PTQGVRI+E E H+      +S  ++E
Sbjct:     3 KVKILLIGPSECGKTALANFLSDTTESIGADYSPTQGVRILEFESHNLHNGNKSSSCDVE 62

Query:    57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
             LWD +GD KFES WPA  +D +G+  VFN  VP H+ E+  +Y  F++   L   +CLLI
Sbjct:    63 LWDCAGDFKFESCWPALMKDSNGVAVVFNPDVPSHLKEIETWYSAFISSQGLLEGQCLLI 122

Query:   117 DNVKPGRG 124
              + KPG G
Sbjct:   123 AHHKPGSG 130

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NYS6 RABL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 51/119 (42%), Positives = 72/119 (60%)

Query:    13 AGKTVLANALCD-LTTAEEYHPTQGVRIVECEHSYALDTSK---TEIELWDTSGDHKFES 68
             +GK+VLAN + + +     Y PTQGVRI+E E       SK      ELWD SGD KFE+
Sbjct:     9 SGKSVLANFVSESIEGIGSYIPTQGVRILEYEKPNLNGNSKGAGCRFELWDCSGDQKFET 68

Query:    69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSS 127
              WPA  +D HG+I +FN  +P H+ E+ ++Y  FV Q  L + +CLL+ + KPG  + +
Sbjct:    69 CWPALMKDSHGVIIIFNPELPSHLKEIEMWYSCFVQQQPLLDSQCLLVAHHKPGSAEDT 127

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9J4	RABL5_BOVIN	No assigned EC number	0.4960	0.9185	0.6702	yes	N/A
Q9DAI2	RABL5_MOUSE	No assigned EC number	0.4656	0.9481	0.6918	yes	N/A
Q5FVJ7	RABL5_RAT	No assigned EC number	0.4724	0.9185	0.6702	yes	N/A
Q5M8K8	RABL5_XENTR	No assigned EC number	0.4603	0.9185	0.6739	yes	N/A
Q9H7X7	RABL5_HUMAN	No assigned EC number	0.4809	0.9481	0.6918	yes	N/A
Q567Y6	RABL5_DANRE	No assigned EC number	0.4728	0.9037	0.6524	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-13
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-10
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-09
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-08
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-08
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-08
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-08
pfam00071	162	pfam00071, Ras, Ras family	9e-08
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-07
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-07
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-07
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	4e-07
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-06
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-06
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-06
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	6e-06
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-05
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-05
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-05
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-05
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-05
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-05
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	6e-05
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	8e-05
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-04
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-04
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-04
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-04
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-04
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	5e-04
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	7e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	0.001
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.001
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.001
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	0.001
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	0.001
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	0.001
pfam10662	143	pfam10662, PduV-EutP, Ethanolamine utilisation - p	0.002
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	0.002
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	0.003
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.003
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.003
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	0.003

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + KI++LG    GKT L N L      E Y PT G        +        +++LWDT+
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDP--AKTIEPYRRNIKLQLWDTA 62

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYD 100
           G  ++ S+ P + R  +GI+ V++S +     EL   + 
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWL 101

Length = 219

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 55.2 bits (134), Expect = 1e-10
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           KI+++G    GKT L     D   +E Y  T GV    + +E      +D  K ++++W
Sbjct: 1  FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIE------VDGKKVKLQIW 54

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F S+  ++ R  HG I V+
Sbjct: 55 DTAGQERFRSITSSYYRGAHGAILVY 80

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 51.7 bits (125), Expect = 3e-09
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           KI+++G    GK+ L +   D   +E+Y  T GV    + +E      +D  + ++++W
Sbjct: 1  FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE------VDGKRVKLQIW 54

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F S+  ++ R   G + V+
Sbjct: 55 DTAGQERFRSITSSYYRGAVGALLVY 80

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVE-CEHSYALDTSKTEIELWD 59
          +K KI+++G    GKT L +        E Y PT    + E    S+ +DT + E+ LWD
Sbjct: 4  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT----VFENYTASFEIDTQRIELSLWD 59

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
          TSG   +++V P    D   ++  F+   P  +  +L
Sbjct: 60 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 96

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDT 60
          ++++I+G    GKT L     D T  E    T GV  +I   E    L   K  +++WDT
Sbjct: 1  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE----LRGKKIRLQIWDT 56

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
          +G  +F S+  A+ R   GII V++
Sbjct: 57 AGQERFNSITSAYYRSAKGIILVYD 81

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 5  ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64
          IL+LG   AGKT L ++L    + E   PT G       +S A+ T    +EL +  G  
Sbjct: 2  ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF------NSVAIPTQDAIMELLEIGGSQ 55

Query: 65 KFESVWPAFQRDVHGIIFVFNS 86
               W  +     G+IFV +S
Sbjct: 56 NLRKYWKRYLSGSQGLIFVVDS 77

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          KI+++G    GKT L    C     E    T GV   E   +  +D  + +++LWDT+G 
Sbjct: 4  KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRE--RTVEIDGERIKVQLWDTAGQ 61

Query: 64 HKF-ESVWPAFQRDVHGIIFVFN 85
           +F +S+   + R+VH ++FV++
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYD 84

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 47.9 bits (115), Expect = 9e-08
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K++++G    GK+ L          EEY PT GV    + +E      +D    ++++WD
Sbjct: 1  KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIE------VDGKTVKLQIWD 54

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F ++ P + R   G + V+
Sbjct: 55 TAGQERFRALRPLYYRGAQGFLLVY 79

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVE-CEHSYALDTSKTEIELWDT 60
          + KI+++G    GKT L       +  E Y PT    + E    S+ +D  + E+ LWDT
Sbjct: 1  RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPT----VFENYTASFEVDKQRIELSLWDT 56

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVP 89
          SG   +++V P    D   ++  F+   P
Sbjct: 57 SGSPYYDNVRPLSYPDSDAVLICFDISRP 85

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 6   LILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +++G    GK+ L NAL        ++    T+   +   E    LD  K ++ L DT G
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKE----LDKGKVKLVLVDTPG 56

Query: 63  DHKFESVWPAFQ-----RDVHGIIFVFNSGVPGHISELLLFYD 100
             +F  +          R    I+ V +S       +  L   
Sbjct: 57  LDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL 99

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LWDT 60
          IK++++G    GK+ +          ++Y  T GV  +E +    L  S  ++   LWDT
Sbjct: 1  IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIF--LRQSDEDVRLMLWDT 58

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNS 86
          +G  +F+++  A+ R     I VF++
Sbjct: 59 AGQEEFDAITKAYYRGAQACILVFST 84

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          IKI+I+G    GK+ L N L     +  EY P      V        D    +  L DT+
Sbjct: 2  IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEE--DGKTYKFNLLDTA 59

Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G   ++++   + R V   + VF+
Sbjct: 60 GQEDYDAIRRLYYRAVESSLRVFD 83

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 5  ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64
          +L +G   AGKT L +AL      ++  PT G    +      L   K E+ ++D  G  
Sbjct: 2  LLTVGLDNAGKTTLVSALQGEIP-KKVAPTVGFTPTK------LRLDKYEVCIFDLGGGA 54

Query: 65 KFESVWPAFQRDVHGIIFVFNS 86
           F  +W  +  + HG++FV +S
Sbjct: 55 NFRGIWVNYYAEAHGLVFVVDS 76

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDT 60
          +KIL++G    GK+ L     D T  E+   T GV  ++        +D  K ++ +WDT
Sbjct: 1  LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVT----VDGKKVKLAIWDT 56

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
          +G  +F ++  ++ R   G+I V++
Sbjct: 57 AGQERFRTLTSSYYRGAQGVILVYD 81

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+LI+G    GK+ L     D T +  Y  T GV    R VE      ++  + ++++WD
Sbjct: 8  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE------INGERVKLQIWD 61

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++   + R  HG+I V++
Sbjct: 62 TAGQERFRTITSTYYRGTHGVIVVYD 87

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 4  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTVKLQIWD 57

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 58 TAGQERFRTITSSYYRGAHGIIIVYD 83

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K++++G +  GKT L N  C     + Y  T GV   E E    L    + ++LWDT+G 
Sbjct: 2  KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDF-EMERFEVLGVPFS-LQLWDTAGQ 59

Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           +F+ +   + R    II VF+
Sbjct: 60 ERFKCIASTYYRGAQAIIIVFD 81

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 5  ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64
          I ++G   +GKT L N +     +E+  PT G  + +      +      I++WD  G  
Sbjct: 2  ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRK------VTKGNVTIKVWDLGGQP 55

Query: 65 KFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
          +F S+W  + R V+ I++V ++     +  
Sbjct: 56 RFRSMWERYCRGVNAIVYVVDAADREKLEV 85

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          +++++G    GK+ L     +   AE   PT GV    R++E E        + +++LWD
Sbjct: 4  RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGV-----RIKLQLWD 58

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F S+  ++ R+  G++ VF+
Sbjct: 59 TAGQERFRSITRSYYRNSVGVLLVFD 84

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIV-ECEHSYALDTSKTEIELWDTSG 62
          K++I+G    GKT L          EEYHPT     V +C     +D    ++ LWDT+G
Sbjct: 3  KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCR----VDGKPVQLALWDTAG 58

Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVP 89
            ++E + P      H I+  F    P
Sbjct: 59 QEEYERLRPLSYSKAHVILIGFAIDTP 85

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          +IL+LG   AGKT +   L  L       PT G  +     +  ++    +  +WD  G 
Sbjct: 1  RILMLGLDGAGKTTILYKLK-LGEVVTTIPTIGFNV----ET--VEYKNVKFTVWDVGGQ 53

Query: 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
           K   +W  +  +  G+IFV +S     I E
Sbjct: 54 DKIRPLWKHYYENTDGLIFVVDSSDRERIEE 84

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVE-CEHSYALDTSKTEIELWDT 60
          + KI+++G    GKT L +        E Y PT    + E    S+ +D  + E+ +WDT
Sbjct: 1  RCKIVVVGDTQCGKTALLHVFAKDNYPESYVPT----VFENYTASFEIDKHRIELNMWDT 56

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
          SG   +++V P    D   ++  F+   P  +  +L
Sbjct: 57 SGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVL 92

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
          ++ K++++G +  GKT +   L      E Y PT       C      +  + E+ LWDT
Sbjct: 12 VRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC---LETEEQRVELSLWDT 68

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVP 89
          SG   +++V P    D   ++  F+   P
Sbjct: 69 SGSPYYDNVRPLCYSDSDAVLLCFDISRP 97

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV-----RIV---ECEHSYALDTSKTE 54
          IK+L LG    GKT       D     ++  T G+     R+V   +     +    +  
Sbjct: 5  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          ++LWDT+G  +F S+  AF RD  G + +F+
Sbjct: 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 95

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          +K L++G    GK  +  +L D +T   Y    G+       +  LD  + +++LWDTSG
Sbjct: 7  LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTT--TILLDGRRVKLQLWDTSG 64

Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F +++ ++ R   GII V++
Sbjct: 65 QGRFCTIFRSYSRGAQGIILVYD 87

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K++++G   +GK+ L + L       E    QG  +         DT    + +WD  G 
Sbjct: 1  KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGL--LNIWDFGGR 58

Query: 64 HKFESVWPAFQRDVHGIIFVFNS 86
           + +     F +    I+ V++ 
Sbjct: 59 EELKFEHIIFMKWADAILLVYDL 81

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDT 60
           ++IL+LG   AGKT +   L      +  H  PTQG  I   +     D  K  + +WD 
Sbjct: 16  VRILLLGLDNAGKTTILKQLAS---EDISHITPTQGFNIKNVQA----DGFK--LNVWDI 66

Query: 61  SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
            G  K    W  +  +   +I+V +S       E
Sbjct: 67  GGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEE 100

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI-VECE-HSYALDTSKTEIELWDTS 61
          ++L++G    GKT L   LC  T   E+H +    I V+ +  +  +D  K  I++WDT+
Sbjct: 2  RLLLIGDSGVGKTCL---LCRFTD-NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTA 57

Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +++++   + R   GI  V++
Sbjct: 58 GQERYQTITKQYYRRAQGIFLVYD 81

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K++ILG    GKT L N   +   + +Y  T G   +  E    +D     +++WDT+G 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VTVDDRLVTLQIWDTAGQ 59

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ---SDLNNHKCLLIDN 118
            +F+S+  AF R     + V++   P     L  + D F+ Q    D  N   +++ N
Sbjct: 60  ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGN 117

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELW 58
          +  KIL++G    GK+ L  +    ++ E+  PT GV  +I +      +   + ++ +W
Sbjct: 13 LSFKILLIGDSGVGKSSLLVSFIS-SSVEDLAPTIGVDFKIKQ----LTVGGKRLKLTIW 67

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
          DT+G  +F ++  ++ R+  GII V++
Sbjct: 68 DTAGQERFRTLTSSYYRNAQGIILVYD 94

Length = 211

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           K+L++G    GK+ L     + +    +  T G+    R +E      LD  K ++++W
Sbjct: 4  FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIE------LDGKKIKLQIW 57

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
          DT+G  +F ++  ++ R   GII V++
Sbjct: 58 DTAGQERFRTITTSYYRGAMGIILVYD 84

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K++ LG    GKT +       T   +Y  T G+    + +       +D     ++LWD
Sbjct: 2  KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMY------VDDKTVRLQLWD 55

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F S+ P++ RD    + V+
Sbjct: 56 TAGQERFRSLIPSYIRDSSVAVVVY 80

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQ--GVRIVECEHSYALDTSKTEIELWDT 60
          +KI++LG    GK+ L          + Y P Q     +   +H+   +     ++ WDT
Sbjct: 1  VKIILLGDSAVGKSKLVERF----LMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
          +G  +F+++  ++    H  I VF+
Sbjct: 57 AGQERFQTMHASYYHKAHACILVFD 81

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K+++LG    GKT L N        + Y PT     +   H   +D    E+ LWDT+G 
Sbjct: 2  KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYI---HDIFVDGLAVELSLWDTAGQ 58

Query: 64 HKFESVWPAFQRDVHGIIFVF 84
           +F+ +      D H I+  F
Sbjct: 59 EEFDRLRSLSYADTHVIMLCF 79

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 18/90 (20%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI--------VECEHSYALDTSKTEI 55
          KI+++G    GKT L        T   + P QG  I        VE +        K ++
Sbjct: 9  KIVLIGNAGVGKTCLVRRF----TQGLFPPGQGATIGVDFMIKTVEIKGE------KIKL 58

Query: 56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          ++WDT+G  +F S+  ++ R  + +I  ++
Sbjct: 59 QIWDTAGQERFRSITQSYYRSANALILTYD 88

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 13/38 (34%), Positives = 26/38 (68%)

Query: 48 LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          +D  K ++++WDT+G  +F SV  A+ RD H ++ +++
Sbjct: 45 VDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD 82

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 26 TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          T    Y  T G+  +    +  LD     ++LWDT+G  +F S+ P++ RD    I V++
Sbjct: 4  TFDNNYQSTIGIDFLS--KTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYD 61

Length = 176

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 5  ILILGPIMAGKTVLANAL-CDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          IL+LG   +GKT + N L      ++   PT G  +   +              +D SG 
Sbjct: 2  ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFK------KGNLSFTAFDMSGQ 55

Query: 64 HKFESVWPAFQRDVHGIIFVFNSG 87
           K+  +W  + +++ GIIFV +S 
Sbjct: 56 GKYRGLWEHYYKNIQGIIFVIDSS 79

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTSG 62
          K+++LG    GK+ L          EEY PT    I +       +D     +++ DT+G
Sbjct: 1  KLVVLGAGGVGKSALTIRFVSGEFVEEYDPT----IEDSYRKQIVVDGETYTLDILDTAG 56

Query: 63 DHKFESVWPAFQ--RDVHGIIFVF 84
            +F       Q  R+  G I V+
Sbjct: 57 QEEFS--AMRDQYIRNGDGFILVY 78

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 4   KILILGPIMAGKTVLANALCDLT--TAEEYHPTQGVRI--VECEHSYALDTSKTEIE-LW 58
           +I I+GP  AGK+ L   L       +      + V+I   +      LD  KT +E L 
Sbjct: 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD-ELDPDKTVLEELS 408

Query: 59  DTSGDHKFESV 69
           +   D   + V
Sbjct: 409 EGFPDGDEQEV 419

Length = 530

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 5   ILILGPIMAGKTVLANALCDLTTA-------EEYHPTQGVRIVECEHSYALDTSKTEIEL 57
           +LILG   AGKT          +         +  PT G+ I        ++  K  +  
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGT------IEVGKARLMF 55

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
           WD  G  +  S+W  +  + HG+I+V +S      +E    ++  +    L     L++ 
Sbjct: 56  WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLA 115

Query: 118 N 118
           N
Sbjct: 116 N 116

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELW 58
           +++ILILG   AGKT +   L  L   E     PT G  +    +         +  +W
Sbjct: 13 KEMRILILGLDNAGKTTI---LYKLKLGEIVTTIPTIGFNVETVTYK------NVKFTVW 63

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFNS 86
          D  G      +W  +  +   +IFV +S
Sbjct: 64 DVGGQESLRPLWRNYFPNTDAVIFVVDS 91

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 18/90 (20%)

Query: 4  KILILGPIMAGKTVLAN--------ALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEI 55
          K +I+G +  GK+ L +        A C  T   E+    G RI+E      ++  K ++
Sbjct: 4  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF----GTRIIE------VNGQKIKL 53

Query: 56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          ++WDT+G  +F +V  ++ R   G + V++
Sbjct: 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYD 83

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPT---QGVRIVECEHSYALDTSKT-EIEL 57
          K+KI+++G    GKT L       +  EEY PT     V  ++      +   K  E+ L
Sbjct: 3  KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQ------VPNGKIIELAL 56

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WDT+G   ++ + P    DV  I+  +
Sbjct: 57 WDTAGQEDYDRLRPLSYPDVDVILICY 83

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          KI+++G    GKT +       T +E    T GV       +  +   + ++++WDT+G 
Sbjct: 5  KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTM--KTLEIQGKRVKLQIWDTAGQ 62

Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           +F ++  ++ R  +G I  ++
Sbjct: 63 ERFRTITQSYYRSANGAIIAYD 84

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDT 50
          MK KI+++G    GKT L  AL       +Y  TQ +          +DT
Sbjct: 1  MK-KIMLIGRSGCGKTTLTQALNGEEL--KYKKTQAIEF----SDNMIDT 43

Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 16/96 (16%)

Query: 4  KILILGPIMAGKTVLANAL---CDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIELW 58
          ++L+LG   AGK+ L   L     +TT     PT G  V +++ E   +L        +W
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTI----PTVGFNVEMLQLEKHLSL-------TVW 49

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
          D  G  K  +VW  +  +  G+++V +S     + E
Sbjct: 50 DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDE 85

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          +++IL++G   AGKT +   L  L  +    PT G  +    +            +WD  
Sbjct: 13 EMRILMVGLDAAGKTTILYKL-KLGESVTTIPTIGFNVETVTYK------NISFTVWDVG 65

Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
          G  K   +W  +  +  G+IFV +S     I E
Sbjct: 66 GQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDE 98

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 5   ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK-TEIELWDTSGD 63
           +L+LGP  +GKT L   L    T  +   T    I     S+  ++SK  ++ L D  G 
Sbjct: 3   VLLLGPSDSGKTALFTKL----TTGKVRSTV-TSIEPNVASFYSNSSKGKKLTLVDVPGH 57

Query: 64  HKF-ESVWPAFQRDVHGIIFVFNS-GVPGHISEL-LLFYDYFVTQSDLNNHKCLLI 116
            K  + +    +  +  I+FV +S     +I ++    YD       + N   +LI
Sbjct: 58  EKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILI 113

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++IL++G   AGKT +   L  L       PT G  +   E+            +WD  
Sbjct: 17  EMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVG 69

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
           G  K   +W  + ++  G+IFV +S     + E
Sbjct: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE 102

Length = 181

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K++I+G   AGKT +   L      E     PT G  + E      +        +WD  
Sbjct: 17 KVIIVGLDNAGKTTI---LYQFLLGEVVHTSPTIGSNVEE------IVYKNIRFLMWDIG 67

Query: 62 GDHKFESVWPAFQRDVHGIIFVFNS 86
          G     S W  +  +   +I V +S
Sbjct: 68 GQESLRSSWNTYYTNTDAVILVIDS 92

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG0084|consensus	205		100.0
KOG0094|consensus	221		100.0
KOG0080|consensus	209		100.0
KOG0092|consensus	200		100.0
KOG0078|consensus	207		100.0
KOG0098|consensus	216		100.0
KOG0087|consensus	222		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0095|consensus	213		100.0
KOG0093|consensus	193		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0079|consensus	198		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.98
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.98
KOG0394|consensus	210		99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
PLN00023	334	GTP-binding protein; Provisional	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
KOG0086|consensus	214		99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
KOG0091|consensus	213		99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.96
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.96
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.96
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.96
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
KOG0081|consensus	219		99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
PLN03108	210	Rab family protein; Provisional	99.95
KOG0088|consensus	218		99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
PLN03118	211	Rab family protein; Provisional	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.95
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.95
KOG0070|consensus	181		99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.95
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.95
KOG0395|consensus	196		99.95
KOG0073|consensus	185		99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG0083|consensus	192		99.95
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.95
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.95
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.94
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
KOG0393|consensus	198		99.94
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.94
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.94
KOG0071|consensus	180		99.93
KOG0097|consensus	215		99.93
KOG0075|consensus	186		99.93
KOG4252|consensus	246		99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.9
KOG0074|consensus	185		99.9
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.89
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.89
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.88
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.87
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.87
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.85
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.85
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.85
KOG1673|consensus	205		99.85
PTZ00099	176	rab6; Provisional	99.85
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.85
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.84
KOG0096|consensus	216		99.84
KOG3883|consensus	198		99.84
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.84
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.84
KOG0076|consensus	197		99.83
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.83
PRK04213	201	GTP-binding protein; Provisional	99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.82
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.82
PRK12299	335	obgE GTPase CgtA; Reviewed	99.81
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.81
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.81
KOG1707|consensus	625		99.81
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.8
PRK15494	339	era GTPase Era; Provisional	99.8
CHL00189	742	infB translation initiation factor 2; Provisional	99.8
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.79
KOG4423|consensus	229		99.79
PRK11058	426	GTPase HflX; Provisional	99.79
cd00881	189	GTP_translation_factor GTP translation factor fami	99.79
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.79
PRK00093	435	GTP-binding protein Der; Reviewed	99.79
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.78
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.78
KOG0072|consensus	182		99.78
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.78
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.78
COG2229	187	Predicted GTPase [General function prediction only	99.78
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.77
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.77
PRK05306	787	infB translation initiation factor IF-2; Validated	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
PRK12297	424	obgE GTPase CgtA; Reviewed	99.76
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.76
KOG0077|consensus	193		99.76
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.76
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.75
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.74
PRK12296	500	obgE GTPase CgtA; Reviewed	99.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.74
PRK04004	586	translation initiation factor IF-2; Validated	99.73
PRK05433	600	GTP-binding protein LepA; Provisional	99.73
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.73
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.73
PRK10218	607	GTP-binding protein; Provisional	99.72
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
PRK12298	390	obgE GTPase CgtA; Reviewed	99.71
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.7
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.7
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.7
PRK00089	292	era GTPase Era; Reviewed	99.7
PRK12317	425	elongation factor 1-alpha; Reviewed	99.69
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.69
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.69
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.68
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.68
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
COG1160	444	Predicted GTPases [General function prediction onl	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
PRK00093	435	GTP-binding protein Der; Reviewed	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.65
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.65
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.64
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.63
COG0218	200	Predicted GTPase [General function prediction only	99.62
KOG0090|consensus	238		99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.6
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.6
COG1159	298	Era GTPase [General function prediction only]	99.59
KOG1489|consensus	366		99.59
COG0486	454	ThdF Predicted GTPase [General function prediction	99.58
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.57
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.57
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.57
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.54
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.53
COG1084	346	Predicted GTPase [General function prediction only	99.53
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.53
PRK12735	396	elongation factor Tu; Reviewed	99.53
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.53
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.51
PRK12736	394	elongation factor Tu; Reviewed	99.5
PLN03126	478	Elongation factor Tu; Provisional	99.49
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.49
PRK12739	691	elongation factor G; Reviewed	99.48
CHL00071	409	tufA elongation factor Tu	99.48
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.47
PLN03127	447	Elongation factor Tu; Provisional	99.45
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.45
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.44
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.43
COG3596	296	Predicted GTPase [General function prediction only	99.43
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.43
PLN00043	447	elongation factor 1-alpha; Provisional	99.43
PRK00049	396	elongation factor Tu; Reviewed	99.42
KOG3886|consensus	295		99.41
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.41
PRK00007	693	elongation factor G; Reviewed	99.41
PRK12740	668	elongation factor G; Reviewed	99.4
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.4
COG2262	411	HflX GTPases [General function prediction only]	99.39
PTZ00141	446	elongation factor 1- alpha; Provisional	99.39
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.39
KOG3905|consensus	473		99.39
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.38
KOG1423|consensus	379		99.38
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.38
PTZ00416	836	elongation factor 2; Provisional	99.36
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.35
PRK07560	731	elongation factor EF-2; Reviewed	99.35
PRK09602	396	translation-associated GTPase; Reviewed	99.34
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.34
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.32
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.32
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.29
KOG1145|consensus	683		99.29
COG1160	444	Predicted GTPases [General function prediction onl	99.28
KOG0082|consensus	354		99.28
COG0536	369	Obg Predicted GTPase [General function prediction	99.28
KOG1191|consensus	531		99.27
PRK14845	1049	translation initiation factor IF-2; Provisional	99.26
KOG0468|consensus	971		99.23
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.21
KOG0462|consensus	650		99.16
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.16
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.15
KOG3887|consensus	347		99.14
KOG1707|consensus	625		99.13
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.12
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.11
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.1
PRK13768	253	GTPase; Provisional	99.09
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.09
COG1163	365	DRG Predicted GTPase [General function prediction	99.07
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.05
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.04
PTZ00258	390	GTP-binding protein; Provisional	99.04
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.03
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.01
PRK09601	364	GTP-binding protein YchF; Reviewed	99.0
PRK09866	741	hypothetical protein; Provisional	99.0
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.97
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.95
KOG2655|consensus	366		98.95
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.93
KOG1547|consensus	336		98.87
KOG0705|consensus	749		98.86
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.81
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.8
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.78
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
KOG0458|consensus	603		98.74
KOG1954|consensus	532		98.72
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.71
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.71
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.7
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.69
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.64
KOG1144|consensus	1064		98.63
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.61
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.6
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.57
COG1161	322	Predicted GTPases [General function prediction onl	98.57
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.52
KOG1490|consensus	620		98.5
KOG1486|consensus	364		98.5
KOG0410|consensus	410		98.45
KOG2486|consensus	320		98.45
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.43
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.43
KOG4273|consensus	418		98.41
PRK12288	347	GTPase RsgA; Reviewed	98.39
KOG0085|consensus	359		98.36
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.35
KOG1491|consensus	391		98.33
KOG0461|consensus	522		98.31
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.3
PRK13796	365	GTPase YqeH; Provisional	98.3
PRK12289	352	GTPase RsgA; Reviewed	98.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.28
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.27
KOG0464|consensus	753		98.25
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.22
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.21
KOG3859|consensus	406		98.19
PRK00098	298	GTPase RsgA; Reviewed	98.17
KOG0467|consensus	887		98.15
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.15
KOG1532|consensus	366		98.12
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.08
cd03112	158	CobW_like The function of this protein family is u	98.07
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.05
PRK10416	318	signal recognition particle-docking protein FtsY;	98.04
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.04
PRK08118	167	topology modulation protein; Reviewed	98.02
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.02
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.02
COG1162	301	Predicted GTPases [General function prediction onl	98.02
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.0
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.99
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.98
KOG0448|consensus	749		97.97
KOG1424|consensus	562		97.97
PRK14531	183	adenylate kinase; Provisional	97.97
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.95
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.95
PRK07261	171	topology modulation protein; Provisional	97.95
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.95
KOG0447|consensus	980		97.92
COG3523	1188	IcmF Type VI protein secretion system component Va	97.92
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.91
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.9
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.89
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.87
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.85
KOG0099|consensus	379		97.84
PRK14530	215	adenylate kinase; Provisional	97.84
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.84
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.83
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.82
PF05729	166	NACHT: NACHT domain	97.82
PF00004	132	AAA: ATPase family associated with various cellula	97.8
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.8
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.79
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.79
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.78
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.77
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.77
smart00382	148	AAA ATPases associated with a variety of cellular	97.77
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.76
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.76
PRK06217	183	hypothetical protein; Validated	97.76
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.76
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.75
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.75
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.75
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.75
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.74
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.74
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.74
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.74
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.74
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.74
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.73
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.73
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.73
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.73
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.73
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.73
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.73
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.73
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.72
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.72
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.72
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.72
KOG0066|consensus	807		97.72
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.72
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.72
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.72
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.72
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.71
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.71
PRK03839	180	putative kinase; Provisional	97.71
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.71
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.71
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.71
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.7
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.7
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.7
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.7
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.7
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.7
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.69
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.69
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.69
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.69
PRK10908	222	cell division protein FtsE; Provisional	97.69
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.69
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.69
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.68
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.68
PRK13949	169	shikimate kinase; Provisional	97.68
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.68
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.68
KOG0465|consensus	721		97.68
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.68
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.68
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.68
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.68
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.68
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.67
PRK14532	188	adenylate kinase; Provisional	97.66
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.66
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.66
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.66
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.66
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.66
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.66
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.65
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.65
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.65
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.65
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.65
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.65
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.65
COG4181	228	Predicted ABC-type transport system involved in ly	97.65
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.64
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.64
KOG1143|consensus	591		97.64
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.64
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.64
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.64
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.64
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.64
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.63
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.63
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.63
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.63
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.63
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.63
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.63
cd03246	173	ABCC_Protease_Secretion This family represents the	97.63
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.63
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.62
PRK12289	352	GTPase RsgA; Reviewed	97.62
PRK14738	206	gmk guanylate kinase; Provisional	97.62
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.61
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.61
PRK02496	184	adk adenylate kinase; Provisional	97.61
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.61
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.61
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.61
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	97.61
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.61

>KOG0084|consensus

Probab=100.00  E-value=1.4e-39  Score=204.41  Aligned_cols=117  Identities=26%  Similarity=0.411  Sum_probs=110.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||+|+.|+.++.++..+..|+|+++...+...  ++..++++||||.|||+|+.+..+||++|+|+|
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~--~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee--cceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            489999999999999999999999999999999999988777755  458889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||+++.+||+++..|+.++.++.. +++|.++||||||
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~D  125 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCD  125 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccc
Confidence            99999999999999999999998876 5789999999999

>KOG0094|consensus

Probab=100.00  E-value=4.5e-36  Score=188.37  Aligned_cols=118  Identities=20%  Similarity=0.359  Sum_probs=111.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++|++++|+.+|||||||+++..+.+...|.+|+|+++...+..+  .+..+.+++|||.|||+|+.+.+.|+++++++|
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l--~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE--cCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            389999999999999999999999999999999999998887744  457999999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||+++..||++...|++++.++++..++-+++||||.|
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtD  139 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTD  139 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccc
Confidence            9999999999999999999999999877799999999999

>KOG0080|consensus

Probab=100.00  E-value=2.7e-35  Score=179.83  Aligned_cols=126  Identities=22%  Similarity=0.320  Sum_probs=114.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+.++....+.+....|+|+++......+  ++..+++.||||.|||+|+.+.+.||+.|.++|
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v--dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV--DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE--cCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            489999999999999999999999998888888999887766654  558899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCcccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGH  129 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~  129 (135)
                      +|||++.+++|.++..|++++..+...+++-.++||||+|   ++.+++++
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE  139 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE  139 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH
Confidence            9999999999999999999999998888999999999999   34666554

>KOG0092|consensus

Probab=100.00  E-value=9.5e-35  Score=182.06  Aligned_cols=117  Identities=21%  Similarity=0.326  Sum_probs=110.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++|++++|+.+||||||+.|+..+.+.....||+|..|.+.+.....  ..+++.||||.|+|+|.++.+.||++|+++|
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~--~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD--NTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC--cEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            68999999999999999999999999888899999999888887644  6899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||+++.+||..++.|++++.++.+ +++.+.|||||+|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~D  121 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKAD  121 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhh
Confidence            99999999999999999999988877 7899999999999

>KOG0078|consensus

Probab=100.00  E-value=3.4e-34  Score=182.28  Aligned_cols=128  Identities=20%  Similarity=0.335  Sum_probs=115.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+++||||+++.++..+.+...+..|+|+++...+...  ++..+.+++|||.||++|+.+...||+.|.+++
T Consensus        12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l--~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~   89 (207)
T KOG0078|consen   12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL--DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL   89 (207)
T ss_pred             EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe--CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence            479999999999999999999999999999999999998877765  448899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC---Cccccccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG---RGDSSGHAHS  132 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~---~~~~~~~l~~  132 (135)
                      +|||+++..||+++..|+..+..+.. +++|.++||||+|.   +.++.+.-++
T Consensus        90 LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~  142 (207)
T KOG0078|consen   90 LVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEA  142 (207)
T ss_pred             EEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHH
Confidence            99999999999999999999988876 48999999999993   3455444443

>KOG0098|consensus

Probab=100.00  E-value=4e-34  Score=178.42  Aligned_cols=128  Identities=23%  Similarity=0.318  Sum_probs=114.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+|++++|+.|||||+|+.+++...+.+.+..|+|+++-.....+  ++..++++||||.|++.|++....||+.+.+++
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i--d~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI--DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE--cCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            589999999999999999999999999999999999887666644  458999999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCccccccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGHAHS  132 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~l~~  132 (135)
                      +|||+++.+||..+..|+.++.++.. +++.++|+|||+|   .+.++++|-+.
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGea  136 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEA  136 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHH
Confidence            99999999999999999999988763 6999999999999   34555555443

>KOG0087|consensus

Probab=100.00  E-value=7.6e-34  Score=180.32  Aligned_cols=117  Identities=20%  Similarity=0.353  Sum_probs=110.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+||+++|+++||||-|+.++...++..+..+|+|+.+.+....+  ++..++.+||||.|||+|+.+...||+.+.+++
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v--d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV--DGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee--cCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            479999999999999999999999999999999999888777644  558999999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||++.+.+|+++..|+.+++.+.. +++++++||||+|
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~D  130 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSD  130 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchh
Confidence            99999999999999999999998886 5999999999999

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=5.4e-32  Score=176.45  Aligned_cols=117  Identities=24%  Similarity=0.399  Sum_probs=104.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +.|+++|+.|||||||++++..+.+...+.+|++.++.......  ++..+.+++||++|+++|+.++..|+++++++++
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~--~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl   78 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL--RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL   78 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE--CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence            37999999999999999999999998889999998776555443  3467999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||+++++||+++..|+..+.+... .++|+++||||+|.
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~~~-~~~piilVgNK~DL  117 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDC  117 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence            9999999999999999998866543 47999999999994

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5.9e-32  Score=173.03  Aligned_cols=115  Identities=17%  Similarity=0.241  Sum_probs=102.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+.++..+.+...+.||++..+. ...  ..++..++++|||++|+++|+.++..++++++++++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~--~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il   78 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANV--SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   78 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEE--EECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence            69999999999999999999999999889999987553 222  334578999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||+++++||+++ ..|+.++.+...  ++|++|||||+|.
T Consensus        79 vyd~~~~~Sf~~~~~~w~~~i~~~~~--~~piilvgnK~Dl  117 (176)
T cd04133          79 AFSLISRASYENVLKKWVPELRHYAP--NVPIVLVGTKLDL  117 (176)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEeChhh
Confidence            9999999999998 789999976653  7999999999995

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=100.00  E-value=9.5e-32  Score=175.12  Aligned_cols=120  Identities=22%  Similarity=0.308  Sum_probs=104.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeee---cCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA---LDTSKTEIELWDTSGDHKFESVWPAFQRDVHG   79 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   79 (135)
                      +||+++|++|||||||++++.++.+...+.+|+|.++........   .++..+.++|||++|+++|+.++..+|+++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988899999987655555442   23467899999999999999999999999999


Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHhcc------------------CCCCceEEEEEecCCC
Q psy10117         80 IIFVFNSGVPGHISELLLFYDYFVTQS------------------DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~p~ivv~nK~D~  122 (135)
                      +++|||+++++||+++..|+.++.+..                  ...++|++|||||+|.
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl  141 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQ  141 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccc
Confidence            999999999999999999999997642                  1236899999999994

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=8.5e-32  Score=173.19  Aligned_cols=118  Identities=27%  Similarity=0.420  Sum_probs=104.4

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      .++||+++|++|||||||+.++..+.+...+.||++..+. .  ....++..+.+++||++|+++|+.++..++++++++
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~--~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-A--SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-E--EEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            3689999999999999999999999999999999986553 2  234456789999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         81 IFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        81 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++|||+++++||+++ ..|++++.+..  ++.|++|||||+|.+
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~  122 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLR  122 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhh
Confidence            999999999999998 89999997765  379999999999953

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=8.7e-32  Score=172.69  Aligned_cols=116  Identities=24%  Similarity=0.415  Sum_probs=103.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.++..+.||++..+. ..  ...++..+.+++||++|++.|..++..+++++++++
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~--~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i   77 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-AS--FEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL   77 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EE--EEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence            589999999999999999999999999889999886542 22  334457899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++ ..|+..+.+..  ++.|+++||||+|.
T Consensus        78 lvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL  117 (178)
T cd04131          78 ICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDL  117 (178)
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhh
Confidence            99999999999996 89999998765  37999999999995

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095|consensus

Probab=100.00  E-value=4.6e-32  Score=164.12  Aligned_cols=117  Identities=21%  Similarity=0.337  Sum_probs=108.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+||+++|..|+|||+|++++..+.+++....|+|+++.-.+.++  ++.+++++||||.|+++|+++.+.||+.++++|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev--~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV--NGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE--CCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            589999999999999999999999999999999999877666654  558999999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++||++-..+|+.+.+|+.+|..+.. ..+--++||||.|
T Consensus        85 lvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d  123 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKID  123 (213)
T ss_pred             EEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccc
Confidence            99999999999999999999988766 4677889999999

>KOG0093|consensus

Probab=100.00  E-value=4.2e-32  Score=163.67  Aligned_cols=118  Identities=19%  Similarity=0.327  Sum_probs=108.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+|++++|.+.+|||||+.++++..+...+-.|.|+++...+.  ......++++||||.|+|+++.+...||++++++|
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv--yr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV--YRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe--eecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            4699999999999999999999999999999999998876644  34447799999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++||+++.+||..++.|+.+|..+.- .++|+++||||||.
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDm  138 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDM  138 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCC
Confidence            99999999999999999999987744 69999999999993

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.7e-31  Score=172.64  Aligned_cols=117  Identities=22%  Similarity=0.355  Sum_probs=104.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+.|||||||+.++..+.+...+.++.+..+......  .++..+.+++||++|+++|+.++..+++++++++
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~--~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTIL--LDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEE--ECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            47999999999999999999999888888888888876544443  3456799999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..|++++..+.  +++|++|||||+|.
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL  122 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHL  122 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence            9999999999999999999997664  48999999999995

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0079|consensus

Probab=100.00  E-value=7.6e-33  Score=167.06  Aligned_cols=116  Identities=22%  Similarity=0.422  Sum_probs=107.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +|.+|+|++|+|||+|+.++....+...|-.|+|+++.-.+..  .++..++++|||+.|+|+|+.+...||+..+++++
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~--i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD--INGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee--cCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            4678999999999999999999999999999999987766654  45789999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||+++.+||.++..|++++.++++  ..|-++||||.|+
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~  124 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDD  124 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCC
Confidence            9999999999999999999987765  8999999999993

>cd01875 RhoG RhoG subfamily

Probab=99.98  E-value=2e-31  Score=172.85  Aligned_cols=116  Identities=22%  Similarity=0.301  Sum_probs=102.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+.++..+.+...+.||++..+. ...  ..++..+.+++||++|+++|+.++..+++++++++
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~--~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQT--AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEE--EECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            389999999999999999999999998889999986543 222  33457899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++. .|+..+....  +++|++|||||+|.
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL  119 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDL  119 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhh
Confidence            999999999999996 6998886653  47999999999995

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.98  E-value=3.6e-31  Score=175.44  Aligned_cols=118  Identities=23%  Similarity=0.398  Sum_probs=104.2

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      +.+||+++|++|||||||+.++..+.+...+.||++..+..   ....++..+.++||||+|+++|+.++..+|++++++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~---~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA---GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE---EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            36899999999999999999999999999999999876532   234456789999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         81 IFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        81 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++|||+++++||+++ ..|+.++....+  +.|+++||||+|..
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~--~~piilVgNK~DL~  130 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYCP--STRILLIGCKTDLR  130 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhCC--CCCEEEEEECcccc
Confidence            999999999999985 899999977553  78999999999953

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0394|consensus

Probab=99.97  E-value=5.6e-32  Score=168.51  Aligned_cols=118  Identities=24%  Similarity=0.417  Sum_probs=109.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|+|||||++++...++...+..|+|.++.+....++  +..+.++||||+|+|+|+++...||+++|++++
T Consensus        10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd--~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen   10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD--DRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc--CeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            799999999999999999999999999999999999988887665  588999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCC---CCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDL---NNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~  122 (135)
                      |||+.+++||+.+..|-+++..+...   ..-|++|+|||.|.
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~  130 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV  130 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence            99999999999999999999887643   35799999999994

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.4e-30  Score=165.35  Aligned_cols=118  Identities=20%  Similarity=0.331  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++..+.+...+.++.+.++......  .++..+.+.+||++|+++++..+..+++++++++
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE--VNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   79 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEE--ECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            58999999999999999999999998888888888876554443  3346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+.++..... ++.|+++||||+|.
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iiiv~nK~Dl  119 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADL  119 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence            99999999999999999999866543 47899999999994

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=1.3e-30  Score=167.27  Aligned_cols=121  Identities=25%  Similarity=0.353  Sum_probs=106.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec--------CCceEEEEEEecCCCcccccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL--------DTSKTEIELWDTSGDHKFESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~~~~~~~i~d~~g~~~~~~~~~~~   73 (135)
                      .+||+++|++|||||||++++.++.+.+.+.++++.++.........        .+..+.+.+||++|++++...+..+
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF   83 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence            47999999999999999999999999988999999877665554421        2456899999999999999999999


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++++++|||++++++|..+..|+..+.......+.|+++||||+|.
T Consensus        84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl  132 (180)
T cd04127          84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL  132 (180)
T ss_pred             hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence            9999999999999999999999999999977655557899999999994

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=1.7e-30  Score=169.65  Aligned_cols=119  Identities=22%  Similarity=0.393  Sum_probs=103.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.+|++.++........ ++..+.+.+||++|+++++.++..++++++++++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il   79 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWD-PNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAII   79 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence            589999999999999999999999888899999987655444332 1467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+....   ...++|+++||||+|.
T Consensus        80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl  122 (201)
T cd04107          80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL  122 (201)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence            999999999999999999886532   2257899999999995

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=1.5e-30  Score=164.35  Aligned_cols=118  Identities=19%  Similarity=0.320  Sum_probs=102.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+...+.+|.+..+ ...  ...++..+.+++||++|+++++.++..+++++++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQ--IEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV   77 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEE--EEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence            47999999999999999999999988888888876432 222  233456788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.+.....+.|+++|+||+|.
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  118 (163)
T cd04136          78 LVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL  118 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999987665568999999999995

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=1.5e-30  Score=166.65  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=100.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.||++..+. ...  ..++..+.+++||++|++++..++..++++++++++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il   78 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTV--MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   78 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEE--EECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence            79999999999999999999999998889999987553 222  234567899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++. .|+..+....  +++|+++||||+|.
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl  117 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDL  117 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhh
Confidence            99999999999996 6999887654  37999999999994

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=1.9e-30  Score=164.31  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=103.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+...+.++.+..+. ..  ...++..+.+++||++|++++..++..+++++++++
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQ--VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV   77 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EE--EEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence            579999999999999999999998888788888876542 22  233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  118 (164)
T cd04175          78 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL  118 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence            99999999999999999999987655568999999999995

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=1.7e-30  Score=165.89  Aligned_cols=118  Identities=17%  Similarity=0.213  Sum_probs=102.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.++..+.|+.+..+.   .....++..+.+++||++|+++++.++..+++.+++++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i   78 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK---QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI   78 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE---EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence            479999999999999999999999998888899886543   22233457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+.+..|+..+.+.....++|+++||||+|.
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl  119 (172)
T cd04141          79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL  119 (172)
T ss_pred             EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhh
Confidence            99999999999999999888876544457999999999994

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PLN00023 GTP-binding protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=177.23  Aligned_cols=121  Identities=18%  Similarity=0.292  Sum_probs=105.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec-----------CCceEEEEEEecCCCcccccch
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL-----------DTSKTEIELWDTSGDHKFESVW   70 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----------~~~~~~~~i~d~~g~~~~~~~~   70 (135)
                      ++||+++|+.|||||||++++.++.+...+.+|+|.++....+.+..           .+..+.++|||++|+++|+.++
T Consensus        21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~  100 (334)
T PLN00023         21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCR  100 (334)
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhh
Confidence            58999999999999999999999999888999999887655554421           2357899999999999999999


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-----------CCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-----------LNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~D~  122 (135)
                      ..||++++++|+|||+++.++|+++..|++++.....           ..++|++|||||+|.
T Consensus       101 ~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL  163 (334)
T PLN00023        101 SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI  163 (334)
T ss_pred             HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence            9999999999999999999999999999999987532           125899999999995

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2e-30  Score=171.23  Aligned_cols=117  Identities=20%  Similarity=0.258  Sum_probs=105.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+...+.+|++.++.......  +...+.+++||++|+++|..++..+++++++++
T Consensus        13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE--CCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            579999999999999999999999998889999998877655433  335689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|..+..|+..+.+..  .+.|+++||||+|.
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl  129 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDV  129 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhh
Confidence            9999999999999999999997654  47999999999995

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=1.7e-30  Score=171.34  Aligned_cols=117  Identities=23%  Similarity=0.384  Sum_probs=102.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+.++..+.++..+.||++.++. .  ....++..+.+.+||++|++.|..++..+|+++|+++
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~--~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il   77 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-A--SFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL   77 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-E--EEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence            479999999999999999999999999999999987653 2  2334557899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|+++ ..|...+....  ++.|++|||||+|.+
T Consensus        78 lvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~  118 (222)
T cd04173          78 ICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMR  118 (222)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccc
Confidence            99999999999999 57887775543  479999999999964

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=2.9e-30  Score=164.61  Aligned_cols=117  Identities=22%  Similarity=0.392  Sum_probs=103.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||++++.++.+...+.||++.++.......  ++..+.+++||++|++++..++..+++++|++++|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   79 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI--LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV   79 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence            8999999999999999999999999999999998765444433  34678999999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||++++++|+.+..|++.+.+......+|+++|+||+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl  118 (170)
T cd04108          80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL  118 (170)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence            999999999999999999876544346899999999995

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0086|consensus

Probab=99.97  E-value=3.1e-31  Score=161.08  Aligned_cols=118  Identities=21%  Similarity=0.323  Sum_probs=108.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+|++++|+.|.|||+|+.+++..++.++...|+|+++....+.+.  +..++++||||.|+|+|++....||+++.+++
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG--gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG--GKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec--CcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            3799999999999999999999999999999999998877766553  48899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++.++|+.+..|+.++..... +++.++++|||.|.
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL  126 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDL  126 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhc
Confidence            99999999999999999999976655 68999999999994

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=4e-30  Score=162.58  Aligned_cols=118  Identities=23%  Similarity=0.322  Sum_probs=101.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+. ++....  ..++..+.+++||++|+++|..++..+++++++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i   77 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEI--EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   77 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEE--EECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence            589999999999999999999999988888787763 223233  23446778999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl  118 (163)
T cd04176          78 VVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL  118 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999887654468999999999995

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0091|consensus

Probab=99.97  E-value=1.4e-31  Score=163.95  Aligned_cols=131  Identities=19%  Similarity=0.332  Sum_probs=115.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +++++++|++-+|||||++.+..++++.-..||+|++++...++. .++..+++++|||.|+|+|+++...||++.-+++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~-~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIEL-RPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhc-CCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            689999999999999999999999999888999999887655544 3468899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCC---CCcccccccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKP---GRGDSSGHAHSL  133 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D---~~~~~~~~l~~l  133 (135)
                      +|||+++++||++++.|+++...+.+ ...+.+++||+|+|   .+.++.++.+.+
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEkl  142 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKL  142 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHH
Confidence            99999999999999999999877665 45678899999999   345666666554

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=4.6e-30  Score=165.27  Aligned_cols=116  Identities=22%  Similarity=0.338  Sum_probs=102.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.||.|.++.......  ++..+.+++||++|+++|..++..++++++++++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~--~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil   78 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI--RGTEITFSIWDLGGQREFINMLPLVCNDAVAILF   78 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence            58999999999999999999999998889999998776544433  3467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+.++.+... ...| ++||||+|.
T Consensus        79 v~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl  116 (182)
T cd04128          79 MFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDL  116 (182)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhc
Confidence            9999999999999999999977544 3567 578999995

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=6.4e-30  Score=161.65  Aligned_cols=117  Identities=21%  Similarity=0.342  Sum_probs=103.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+.+.+.++.+.++.......  ++..+.+++||++|++++...+..++++++++++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV--DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL   78 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence            58999999999999999999999998888999998766555433  3467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+.++..... .++|+++||||+|.
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl  117 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEYAP-EGVQKILIGNKADE  117 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence            9999999999999999999876543 47999999999994

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=5.6e-30  Score=162.22  Aligned_cols=118  Identities=19%  Similarity=0.312  Sum_probs=104.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+++++++.+...+.++.+.++.......  ++..+.+++||++|++.+..++..++++++++++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il   78 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL   78 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence            58999999999999999999999998889999998765544433  3467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCC----CCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDL----NNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+.++.+....    .+.|+++|+||+|.
T Consensus        79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  122 (168)
T cd04119          79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL  122 (168)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence            99999999999999999999876542    47999999999995

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=7.2e-30  Score=165.26  Aligned_cols=118  Identities=18%  Similarity=0.304  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.+|.+..+. ..  ...++..+.+++||++|++.+..++..+++++++++
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQ--CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EE--EEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            589999999999999999999999888888888886552 22  233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.+.....+.|+++|+||+|.
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl  122 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL  122 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999987655568999999999995

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=6.4e-30  Score=161.40  Aligned_cols=118  Identities=19%  Similarity=0.339  Sum_probs=104.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++++|||||++++.++.+...+.++.+.++..........+..+.+++||+||++++...+..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999999888888899988776555554433567899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+....  .++|+++|+||+|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl  118 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDL  118 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhc
Confidence            999999999999999999986544  47999999999994

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=8.3e-30  Score=167.48  Aligned_cols=120  Identities=18%  Similarity=0.335  Sum_probs=105.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.+|++.++........ ++..+.+++||++|++++...+..+++++++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE-PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC-CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            6899999999999999999999998888888999887766555432 346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+.++.........|+++||||+|.
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            99999999999999999999987655457899999999995

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.97  E-value=1e-29  Score=160.73  Aligned_cols=116  Identities=18%  Similarity=0.366  Sum_probs=101.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++..+.+.+.+.++.+.+++......  ++..+.+++||++|+++|..++..+++++|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF--EGKTILVDFWDTAGQERFQTMHASYYHKAHACIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE--CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence            58999999999999999999999888777777777655544433  3467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++.+|+.+..|+..+.+..  ++.|+++|+||+|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl  116 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDL  116 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccC
Confidence            999999999999999999997653  37899999999995

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=1.1e-29  Score=160.05  Aligned_cols=118  Identities=18%  Similarity=0.304  Sum_probs=102.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+..+ ...  ...++..+.+++||++|+++++.++..+++++++++
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i   77 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQ--VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   77 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEE--EEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence            47999999999999999999999988888888887543 222  233446678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++.++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  118 (162)
T cd04138          78 CVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL  118 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999987765568999999999995

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=8.7e-30  Score=167.86  Aligned_cols=119  Identities=17%  Similarity=0.264  Sum_probs=104.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+++|.++.+...+.+|.+.+++........ ...+.++|||++|++.+...+..+++++|++++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~-~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil   79 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPG-NLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL   79 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCC-CCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence            5899999999999999999999999888999999887665554422 256899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+.+...  ..++|+++|+||+|.
T Consensus        80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL  121 (215)
T cd04109          80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL  121 (215)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence            9999999999999999999987543  235789999999995

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=1.1e-29  Score=161.08  Aligned_cols=117  Identities=20%  Similarity=0.335  Sum_probs=102.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++.+.++......  .++..+.+.+||++|++++...+..++++++++++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~   79 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVF--RNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE--ECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence            7999999999999999999999998888889888765443332  23466899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+..+.+... ...|+++|+||+|.
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl  118 (165)
T cd01865          80 MYDITNEESFNAVQDWSTQIKTYSW-DNAQVILVGNKCDM  118 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCCEEEEEECccc
Confidence            9999999999999999999876543 47899999999994

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=1.2e-29  Score=161.20  Aligned_cols=117  Identities=19%  Similarity=0.261  Sum_probs=104.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+++++.+.+...+.++.+.++.......  +...+.+.+||++|++.+...+..+++.+|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT--NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence            58999999999999999999998888888899988776555533  4467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |||++++++|..+..|+..+.+...  +.|+++||||+|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~  117 (166)
T cd00877          79 MFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIK  117 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcc
Confidence            9999999999999999999987654  89999999999953

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=1.3e-29  Score=160.06  Aligned_cols=116  Identities=28%  Similarity=0.428  Sum_probs=106.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||++++.++.+...+.++.|.+........  ++..+.+.+||++|++.+...+..++++++++++|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~   78 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI--DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV   78 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE--TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999999988876666654  36889999999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||+++++||+++..|++.+..... .++|++|+|||+|.
T Consensus        79 fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~  116 (162)
T PF00071_consen   79 FDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDL  116 (162)
T ss_dssp             EETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTG
T ss_pred             cccccccccccccccccccccccc-ccccceeeeccccc
Confidence            999999999999999999988766 57999999999993

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=2.1e-29  Score=160.50  Aligned_cols=119  Identities=26%  Similarity=0.409  Sum_probs=104.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-cchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-SVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||++++..+.+...+.++.+.++.......  ++..+.+++||++|+++++ .++..+++++|++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~   79 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI--DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV   79 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE--CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence            479999999999999999999999988888888887765544433  4467899999999999886 5788899999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|..+..|+..+.......++|+++|+||+|.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  121 (170)
T cd04115          80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL  121 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            999999999999999999999987665568999999999994

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=2.4e-29  Score=159.76  Aligned_cols=118  Identities=19%  Similarity=0.354  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|+|||||++++.+..+...+.++.+.++.......  ++..+.+++||++|++.+...+..+++++|+++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL--DGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE--CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            589999999999999999999999998888899988665444432  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.+... .+.|+++||||+|.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl  120 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHAS-EDVERMLVGNKCDM  120 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence            99999999999999999999977543 47899999999995

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=1.9e-29  Score=161.40  Aligned_cols=115  Identities=20%  Similarity=0.299  Sum_probs=99.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+.++.++.+...+.|+.+..+ ....  ..++..+.+.+||++|++.+...+..++++++++++
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il   78 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI   78 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEE--EECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence            7999999999999999999999999888889986433 2222  334577899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||+++++||+++. .|+..+....  ++.|+++||||+|.
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl  117 (174)
T cd01871          79 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  117 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhh
Confidence            99999999999995 6998886653  47999999999995

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=2.6e-29  Score=163.80  Aligned_cols=117  Identities=21%  Similarity=0.392  Sum_probs=103.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.+|.+.++......  .++..+.+.+||++|++.+...+..+++++++++
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE--INGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEE--ECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            47999999999999999999999988888889998776544443  2346678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+....  ...|+++||||+|.
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl  122 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDD  122 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence            9999999999999999999987654  37899999999994

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.7e-29  Score=161.69  Aligned_cols=114  Identities=23%  Similarity=0.388  Sum_probs=99.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+. .+.||++.++.....      ..+.+.+||++|+++++.++..+++++++++
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~------~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY------KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE------CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            479999999999999999999877764 467888877654443      4688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++++..|+..+.+.....++|++||+||+|.
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl  126 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL  126 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence            99999999999999999988876544457999999999995

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=3.8e-29  Score=158.58  Aligned_cols=118  Identities=25%  Similarity=0.392  Sum_probs=103.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++.......  ++..+.+++||++|++++...+..+++++++++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii   79 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   79 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence            479999999999999999999999888888888887665554433  346788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|.++..|+..+.+... .+.|+++|+||+|.
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~~~iiv~nK~Dl  119 (166)
T cd01869          80 IVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDL  119 (166)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEEChhc
Confidence            99999999999999999999876542 47899999999994

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.7e-29  Score=159.41  Aligned_cols=114  Identities=24%  Similarity=0.386  Sum_probs=98.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|.++||||||++++..+.+. .+.||.+.++..+..      ..+.+.+||++|+++++.++..++++++++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            58999999999999999999887776 477888876543332      46889999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |||++++.+|+++..|+..+.......+.|++|++||+|..
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  114 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP  114 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence            99999999999999988888655444578999999999953

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=4e-29  Score=159.04  Aligned_cols=119  Identities=20%  Similarity=0.337  Sum_probs=103.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+++||||||++++.++.+...+.++.+.++......  .++..+.+++||++|+++++.++..+++.+++++
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE--VDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE--ECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            47999999999999999999999988887788888766544443  3457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+.++.....   ..++|+++|+||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  126 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI  126 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccc
Confidence            99999999999999999998876543   246899999999995

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.8e-29  Score=162.44  Aligned_cols=114  Identities=23%  Similarity=0.383  Sum_probs=99.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+++||||||++++..+.+. .+.||.+.++.....      ..+.+++||++|+++++.++..++++++++|
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~------~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEE------CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            479999999999999999999987775 467888877654333      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++++.++..|+.++.......++|++||+||+|.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl  130 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence            99999999999999888888866544458999999999994

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=2e-29  Score=160.45  Aligned_cols=114  Identities=23%  Similarity=0.393  Sum_probs=98.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+++||||||++++..+.+. .+.||.+.++.....      ..+.+++||++|+++++..+..+++++++++
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTY------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            579999999999999999999987764 467888876643332      4688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+++..|+.++.+.....++|++||+||+|.
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  122 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL  122 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCC
Confidence            99999999999999998888876544457899999999995

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=2.6e-29  Score=162.65  Aligned_cols=114  Identities=23%  Similarity=0.318  Sum_probs=99.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||++++.++.++..+.||.+..+..   ....++..+.+++||++|++.+..++..++++++++++|
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~---~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv   78 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH---DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC   78 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE---EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence            89999999999999999999999988888998876532   222345678999999999999999999999999999999


Q ss_pred             EeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||++++++|+.+. .|+..+....  ++.|+++||||+|.
T Consensus        79 ~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl  116 (189)
T cd04134          79 FSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDL  116 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            9999999999996 6999987654  37999999999995

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=5.8e-29  Score=157.66  Aligned_cols=118  Identities=20%  Similarity=0.323  Sum_probs=102.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++.......  ++..+.+++||+||++.+...+..+++.+|+++
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI--EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE--CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            589999999999999999999998888878888877654444432  335678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .++|+++|+||+|.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl  120 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGA-SNVVLLLIGNKCDL  120 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence            99999999999999999999976543 47899999999995

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=6.9e-29  Score=157.22  Aligned_cols=118  Identities=19%  Similarity=0.323  Sum_probs=103.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+++||||||++++.++.+...+.++.+.++.......  ++..+.+++||++|++++..++..+++++++++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI--DGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            479999999999999999999999888788899988776655543  346688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl  120 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence            99999999999999999999877653 36899999999995

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=5.7e-29  Score=157.40  Aligned_cols=117  Identities=19%  Similarity=0.313  Sum_probs=100.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...  ...++..+.+.+||++|++++..++..+++.++++++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~   77 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQ--IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEE--EEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence            5899999999999999999999888877777776433 222  2334467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|...+.+.....+.|+++|+||+|.
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl  117 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL  117 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            9999999999999999998877655557899999999995

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=3.4e-29  Score=162.24  Aligned_cols=116  Identities=22%  Similarity=0.335  Sum_probs=99.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||++++..+.+...+.++.+..+.. .  ...++..+.+++||++|+++++.++..++++++++++|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   77 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-Q--VVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV   77 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-E--EEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence            68999999999999999999988888888888765422 1  22334678899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      ||+++.++|+.+..|+..+.....  ..+.|+++||||+|.
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl  118 (190)
T cd04144          78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK  118 (190)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhc
Confidence            999999999999999998876543  247899999999995

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=8.3e-29  Score=156.27  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=102.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++.+..+.......  ++..+.+++||++|++.+...+..++++++++++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~   78 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV--GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE--CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999999988888888887766555543  3467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|..+..|+..+..... +++|+++++||+|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~  117 (161)
T cd04113          79 VYDITNRTSFEALPTWLSDARALAS-PNIVVILVGNKSDL  117 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence            9999999999999999998865543 57999999999994

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=4.9e-29  Score=162.36  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             ECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC
Q psy10117          8 LGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG   87 (135)
Q Consensus         8 iG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~   87 (135)
                      +|++|||||||+++++.+.+...+.+|+|.++....+..  ++..+.++|||++|+++|+.++..||++++++++|||++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~--~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t   78 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT   78 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE--CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence            699999999999999999888888999998877665543  346789999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         88 VPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        88 ~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++||+.+..|+.++.+..  .++|+++||||+|.
T Consensus        79 ~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl  111 (200)
T smart00176       79 ARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDV  111 (200)
T ss_pred             ChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence            9999999999999998764  37999999999994

Ran is involved in the active transport of proteins through nuclear pores.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=8.5e-29  Score=156.59  Aligned_cols=117  Identities=15%  Similarity=0.233  Sum_probs=102.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC--CCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDL--TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      +||+++|++|||||||++++...  .++..+.++.+.++........ .+..+.+.+||++|++.+..++..+++++|++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i   79 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD-TDNTVELFIFDSAGQELYSDMVSNYWESPSVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC-CCCEEEEEEEECCCHHHHHHHHHHHhCCCCEE
Confidence            58999999999999999999864  6778888999888765555443 45678999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|..+..|+..+....  .+.|+++|+||+|.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl  119 (164)
T cd04101          80 ILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDL  119 (164)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence            99999999999999999999987654  47899999999995

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=1.2e-28  Score=155.76  Aligned_cols=118  Identities=19%  Similarity=0.309  Sum_probs=101.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|+|||||+++++++.+...+.++.+..+. ...  ..++..+.+++||+||++++..++..+++++++++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   78 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQC--EIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFL   78 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEE--EECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEE
Confidence            479999999999999999999998887777788775432 222  23346688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.+.....+.|+++++||+|.
T Consensus        79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl  119 (164)
T cd04145          79 LVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL  119 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence            99999999999999999999887655558999999999994

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=1.1e-28  Score=162.77  Aligned_cols=118  Identities=17%  Similarity=0.306  Sum_probs=105.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++.......  ++..+.+++||++|++++..++..+++++++++
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV--EGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            479999999999999999999999888888899998876665544  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .++|+++|+||+|.
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~Dl  129 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDL  129 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEEChhc
Confidence            99999999999999999999876543 47999999999995

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=1.5e-28  Score=156.37  Aligned_cols=118  Identities=22%  Similarity=0.318  Sum_probs=103.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||++|++++..+...+++++++++
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            479999999999999999999999888888888888766555543  345678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|..+..|+.++.+... ++.|+++|+||.|.
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl  121 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDL  121 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence            99999999999999999999977543 57999999999995

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=1.4e-28  Score=159.06  Aligned_cols=117  Identities=20%  Similarity=0.344  Sum_probs=102.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++.+.++.......  ++..+.+.+||++|++.+...+..++++++++++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil   78 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI--ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence            58999999999999999999999988778889887665444433  3457899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+.++..... ...|++++|||+|.
T Consensus        79 v~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl  117 (188)
T cd04125          79 VYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDL  117 (188)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCC
Confidence            9999999999999999999976543 36899999999994

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=9.6e-29  Score=157.15  Aligned_cols=112  Identities=23%  Similarity=0.415  Sum_probs=98.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      +|+++|++|||||||++++.+. +...+.||.|.+...+..      ..+.+++||++|++.++.++..++++++++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRL------DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEE------CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence            4899999999999999999976 667788998876543333      468899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||++++++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus        74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl  112 (167)
T cd04161          74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDK  112 (167)
T ss_pred             EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCC
Confidence            999999999999999999987655568999999999994

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=1e-28  Score=156.60  Aligned_cols=111  Identities=23%  Similarity=0.349  Sum_probs=97.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      .|+++|++|||||||++++.++.+...+.||.+.+.....      ...+++.+||++|+++++.++..++++++++++|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~------~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V   74 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIP------TQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV   74 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEe------eCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            3799999999999999999998888888899887543222      2568999999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||.+++.+|..++.|+.++....  .++|+++|+||+|.
T Consensus        75 ~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl  111 (164)
T cd04162          75 VDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDL  111 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCC
Confidence            99999999999999999986543  47999999999994

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=1.1e-28  Score=157.04  Aligned_cols=112  Identities=23%  Similarity=0.386  Sum_probs=98.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|+++||||||++++.+..+. .+.||.+.++..+..      ..+.+.+||+||++.++..+..++++++++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~------~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEY------KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEE------CCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence            6899999999999999999998665 477888877654333      568999999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||++++++|+++..|+.++.+.....+.|+++|+||+|.
T Consensus        74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  112 (169)
T cd04158          74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV  112 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCc
Confidence            999999999999999999976654457899999999995

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=1.6e-28  Score=161.82  Aligned_cols=112  Identities=18%  Similarity=0.266  Sum_probs=97.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|.+|||||||++++..+.+.. +.+|++..+.....      ..+.+.+||++|++.|+.++..++++++++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~------~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW------GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe------eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence            589999999999999999999998864 57888876654433      46789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+..+.+.. ..+.|+++||||+|.
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL  112 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDL  112 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccc
Confidence            999999999999999888876543 347899999999995

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01861 Rab6 Rab6 subfamily

Probab=99.96  E-value=1.9e-28  Score=154.56  Aligned_cols=117  Identities=21%  Similarity=0.352  Sum_probs=102.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|+++||||||++++.+..+...+.++.+.++.......  ++..+.+++||+||++++..++..++++++++++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~   78 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL--EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            48999999999999999999999888788888887766655543  3456789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+..... .+.|+++++||+|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~  117 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDL  117 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhc
Confidence            9999999999999999999876544 37999999999995

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04140 ARHI_like ARHI subfamily

Probab=99.96  E-value=2.3e-28  Score=154.99  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=99.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+.. ..  ..+...+.+++||++|++++..++..+++.+++++
T Consensus         1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (165)
T cd04140           1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VI--SCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   77 (165)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EE--EECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence            3799999999999999999999998887788887754422 11  22346788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+.....  ..++|+++|+||+|.
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (165)
T cd04140          78 LVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE  120 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence            99999999999999999887765432  247899999999995

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.2e-28  Score=158.77  Aligned_cols=114  Identities=23%  Similarity=0.411  Sum_probs=98.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+.. +.||.+.++..+..      ..+.+++||++|+++++.++..+++++++++
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEY------KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            4799999999999999999998877754 67888876654332      5688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..++.++.......+.|++||+||+|.
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl  130 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL  130 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence            99999999999999888888765443457899999999995

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=2.5e-28  Score=158.38  Aligned_cols=116  Identities=17%  Similarity=0.290  Sum_probs=100.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +||+++|++|||||||++++.++.+.. .+.++.+..+......  .++..+.+++||++|++++..++..+++++++++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ii   78 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV--VGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAI   78 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEE--ECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEE
Confidence            589999999999999999999988864 6788888766444443  3456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+....  .+.|+++|+||+|.
T Consensus        79 lv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  117 (193)
T cd04118          79 VCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDL  117 (193)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccc
Confidence            9999999999999999999987653  37899999999994

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=2.1e-28  Score=157.98  Aligned_cols=116  Identities=21%  Similarity=0.282  Sum_probs=98.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++.+.++... .. ..++..+.+.+||++|++++...+..+++++|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~-~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~   78 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQ-GPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLI   78 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EE-ecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEE
Confidence            4899999999999999999999999888888887765332 21 122567899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||+++++||+++. .|+..+....  ++.|+++||||+|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  117 (187)
T cd04132          79 CYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDL  117 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhh
Confidence            99999999999995 6998886543  37899999999994

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.96  E-value=4.6e-28  Score=153.06  Aligned_cols=119  Identities=19%  Similarity=0.327  Sum_probs=104.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++++.+...+.++.+..+.......  +...+.+.+||++|++++...+..+++++++++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   78 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL--DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI   78 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence            589999999999999999999999887777888887665555543  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|+.+..|+..+..... ...|+++++||+|..
T Consensus        79 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~  119 (163)
T cd01860          79 VVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLE  119 (163)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc
Confidence            99999999999999999999877654 579999999999953

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.96  E-value=2.9e-28  Score=153.70  Aligned_cols=111  Identities=19%  Similarity=0.303  Sum_probs=91.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+.++..+.+.+.+.|+.+ .+ ...  ...++..+.+.+||++|++.     ..++++++++++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~--i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~il   71 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKE--VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIF   71 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEE--EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEE
Confidence            5899999999999999999999888776655533 22 122  23345678899999999875     356789999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||+++++||+++..|+.++.+.....++|+++||||+|.
T Consensus        72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  111 (158)
T cd04103          72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI  111 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence            9999999999999999999988765567999999999984

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01863 Rab18 Rab18 subfamily

Probab=99.96  E-value=5.5e-28  Score=152.48  Aligned_cols=118  Identities=25%  Similarity=0.389  Sum_probs=103.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   78 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV--DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE--CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence            58999999999999999999998887777888887665444433  3466889999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+.++....+.|+++|+||+|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~  118 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK  118 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence            9999999999999999999988776678999999999995

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.96  E-value=4.3e-28  Score=153.15  Aligned_cols=117  Identities=23%  Similarity=0.400  Sum_probs=102.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+++||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il   78 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV--DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence            58999999999999999999998887778888887665544433  3456789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++.+++.+..|+..+..+.. +++|+++|+||+|.
T Consensus        79 v~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~  117 (164)
T smart00175       79 VYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDL  117 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence            9999999999999999999877654 48999999999994

Rab GTPases are implicated in vesicle trafficking.

>cd04112 Rab26 Rab26 subfamily

Probab=99.96  E-value=5.6e-28  Score=156.63  Aligned_cols=117  Identities=21%  Similarity=0.381  Sum_probs=100.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +||+++|++|||||||++++.++.+. ..+.++.+.++......  .++..+.++|||+||++++...+..+++++++++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i   78 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVT--VDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL   78 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEE--ECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE
Confidence            58999999999999999999998875 35777887765543332  2346789999999999999998999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+..... .++|+++|+||+|.
T Consensus        79 ~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl  118 (191)
T cd04112          79 LLYDITNKASFDNIRAWLTEIKEYAQ-EDVVIMLLGNKADM  118 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccc
Confidence            99999999999999999999977543 47899999999995

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=4e-28  Score=154.91  Aligned_cols=113  Identities=20%  Similarity=0.327  Sum_probs=97.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF   84 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   84 (135)
                      |+++|++|||||||++++.++.+...+.++....+.   .....++..+.+.+||++|++.+..++..++++++++++||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   77 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS---ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF   77 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee---EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence            589999999999999999999988888788765432   22233456789999999999999999999999999999999


Q ss_pred             eCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         85 NSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        85 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |+++++||+++. .|+..+....  ++.|+++||||+|.
T Consensus        78 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  114 (174)
T smart00174       78 SVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDL  114 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhh
Confidence            999999999995 6999987654  37999999999994

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=7.7e-28  Score=153.00  Aligned_cols=118  Identities=21%  Similarity=0.336  Sum_probs=102.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ....  ..++..+.+++||++|+++|..++..+++.+++++
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v   77 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQV--EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL   77 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEE--EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence            47999999999999999999999998888888887543 2222  23346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|...+.+.....+.|+++++||+|.
T Consensus        78 lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~  118 (168)
T cd04177          78 LVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADL  118 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence            99999999999999999999876555558999999999994

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0081|consensus

Probab=99.96  E-value=8.7e-31  Score=160.01  Aligned_cols=119  Identities=25%  Similarity=0.374  Sum_probs=110.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeee-------cCCceEEEEEEecCCCcccccchHHhhc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA-------LDTSKTEIELWDTSGDHKFESVWPAFQR   75 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~~~~~~i~d~~g~~~~~~~~~~~~~   75 (135)
                      +|.+.+|++||||||++.++..+++......|+|+++.+...-+.       ..+..+.+++|||.|+|+|+++...||+
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999988776662       2457799999999999999999999999


Q ss_pred             cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         76 DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        76 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|-+++++||+++.+||-+++.|+.++..+...+++-++++|||+|
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~D  135 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKAD  135 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccc
Confidence            9999999999999999999999999999988888999999999999

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=5.7e-28  Score=161.86  Aligned_cols=117  Identities=17%  Similarity=0.222  Sum_probs=99.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||+++++++.+...+.+|++. ++....  ..++..+.++|||++|++.|..++..++.++|++++
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-~~~k~~--~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl   77 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-FHRKLY--SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL   77 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-hEEEEE--EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            58999999999999999999999998888888863 222222  234567899999999999998888889999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhcc--------CCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQS--------DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~D~  122 (135)
                      |||+++++||+++..|++++....        ...+.|+++|+||+|.
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl  125 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR  125 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence            999999999999999999987542        2247899999999995

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=6.2e-28  Score=154.14  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=97.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +|++++|++|+|||||+.++.++.+...+.+|... .+...  ...++..+.+++||++|++++..++..++++++++++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~   77 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVV--VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL   77 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEE--EEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence            58999999999999999999998888888887643 33333  2334467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++ ..|+..+....  ++.|++++|||+|.
T Consensus        78 v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  116 (173)
T cd04130          78 CFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADL  116 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhh
Confidence            9999999999998 47998886543  36899999999995

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=1.2e-27  Score=152.34  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=99.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +||+++|++|||||||++++.++.+. ..+.||.+.++.......  ++..+.+.+||++|++.+..++..+++++|+++
T Consensus         5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~--~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV--YGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE--CCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            79999999999999999999999988 888999988765444333  346688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+...   .++|+++|+||+|.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl  120 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADL  120 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccc
Confidence            999999999999999999876322   36899999999995

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=1.1e-27  Score=154.39  Aligned_cols=119  Identities=23%  Similarity=0.326  Sum_probs=100.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++..+.+... .||.+.+........ .+...+.+++||++|+++++.++..+++++++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSL-GNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeec-cCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            47999999999999999999998877644 577776665544432 2335689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+.++.......+.|+++|+||+|.
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~  121 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDL  121 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCc
Confidence            99999999999999999998877655457999999999995

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.1e-27  Score=152.92  Aligned_cols=114  Identities=22%  Similarity=0.378  Sum_probs=97.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+ ..+.+|.+.....+..      ..+.+.+||++|++.++.++..+++++++++
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEY------EGYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999998744 4567887765544433      3578999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|.++..|+..+.+.....+.|+++|+||+|.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL  127 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence            99999999999999999988876544458999999999995

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=2.3e-27  Score=150.95  Aligned_cols=118  Identities=26%  Similarity=0.443  Sum_probs=100.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.+..+...+.++.+.++......  .++..+.+++||+||++.+..++..++++++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   78 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT--VDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL   78 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEE--ECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence            5899999999999999999999988777778888766544443  33467889999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~  122 (135)
                      +||++++++|+++..|...+.....   ..+.|+++|+||+|.
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  121 (172)
T cd01862          79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL  121 (172)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence            9999999999999999887765433   237899999999995

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=1.2e-27  Score=150.85  Aligned_cols=113  Identities=23%  Similarity=0.369  Sum_probs=96.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC-CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLT-TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +|+++|++|||||||++++.+.. ....+.||.+.....+..      ..+.+++||+||+++++..+..++++++++++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   74 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEK------GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIF   74 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEE------CCEEEEEEECCCCHhhHHHHHHHHccCCEEEE
Confidence            58999999999999999999875 355678888865544332      56789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      |+|.+++.+|..+..|+..+.+...  ..+.|+++|+||+|.
T Consensus        75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl  116 (162)
T cd04157          75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL  116 (162)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence            9999999999999999998876432  247999999999995

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=155.73  Aligned_cols=118  Identities=21%  Similarity=0.310  Sum_probs=102.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++++.++.......  ++..+.+++||++|++.+..++..+++++++++
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~--~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            479999999999999999999999888778888888765544433  345678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .++|+++++||+|.
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~-~~~piiiv~nK~Dl  123 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDL  123 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccC
Confidence            99999999999999999998866543 47999999999995

>KOG0088|consensus

Probab=99.95  E-value=2.9e-29  Score=153.29  Aligned_cols=118  Identities=19%  Similarity=0.327  Sum_probs=104.3

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      ++||++++|+.-||||||+-++...+|....-+|....+......  .++....++||||.|+++|..+-+.||++.+++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n--~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVN--VEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccc--cccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            579999999999999999999999999877666666555444443  344788999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++|||++|.+||..++.|..++....+ ..+.+++||||.|
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiD  129 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKID  129 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCccc
Confidence            999999999999999999999988776 4789999999999

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=3e-27  Score=153.94  Aligned_cols=118  Identities=16%  Similarity=0.264  Sum_probs=95.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc--------hHHhh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV--------WPAFQ   74 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~   74 (135)
                      +||+++|++|||||||++++.++.+...+.|+.+.+.+.....  .++..+.+++||++|.+.+...        ...++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~--~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~   78 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVV--LSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL   78 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEE--ECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence            5899999999999999999999998888888887655433332  2346788999999997654221        23457


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~  122 (135)
                      +.+|++++|||+++++||+.+..|++.+.+..  ...++|+++||||+|.
T Consensus        79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl  128 (198)
T cd04142          79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ  128 (198)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccc
Confidence            89999999999999999999999999987754  2357999999999995

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.95  E-value=1.8e-27  Score=150.79  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchHHhhccCcEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWPAFQRDVHGIIF   82 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~i~   82 (135)
                      ||+++|++|||||||+++++++.+...+.++.+..+ ....  ..++..+.+++||++|++. +......+++.+|++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   77 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQV--TIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL   77 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEE--EECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence            689999999999999999999888777777775433 2222  2344678899999999985 34567788999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+..... ..+.|+++||||+|.
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  118 (165)
T cd04146          78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADL  118 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence            9999999999999999988876543 347999999999994

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.4e-27  Score=152.90  Aligned_cols=114  Identities=31%  Similarity=0.487  Sum_probs=102.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+.||||||+++++..+... .+.||.|.+...+..      ..+.+.+||.+|+..++..|..|+++++++|
T Consensus        14 ~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~------~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   14 EIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY------KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE------TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             EEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee------CcEEEEEEeccccccccccceeeccccceeE
Confidence            579999999999999999999986543 478999988877776      6788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||+|.++.+.+.+....+.++.......+.|+++++||+|.
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~  127 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDL  127 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTS
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccc
Confidence            99999999999999999999888766678999999999994

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04123 Rab21 Rab21 subfamily

Probab=99.95  E-value=4.8e-27  Score=147.94  Aligned_cols=118  Identities=18%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|+|||||++++.++.+...+.++.+..+.......  .+..+.+++||++|++.+...+..++++++++++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   78 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI--GGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE--CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence            58999999999999999999998887666666665544444332  2456789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |||++++++++.+..|++++...... +.|+++|+||+|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piiiv~nK~D~~  118 (162)
T cd04123          79 VYDITDADSFQKVKKWIKELKQMRGN-NISLVIVGNKIDLE  118 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEECcccc
Confidence            99999999999999999998766543 79999999999953

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=3.5e-27  Score=150.86  Aligned_cols=114  Identities=20%  Similarity=0.297  Sum_probs=98.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|+|||||++++..+.+.. +.++.+.++..+..      ..+.+.+||+||++.+...+..+++++++++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY------KNIRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE------CCeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            4789999999999999999999887764 56888876654443      4688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|.++++++..+..|+..+.+.....+.|+++++||+|.
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl  128 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL  128 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence            99999999999999888888876655557999999999995

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PLN03118 Rab family protein; Provisional

Probab=99.95  E-value=7e-27  Score=153.63  Aligned_cols=118  Identities=22%  Similarity=0.367  Sum_probs=98.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+ ..+.++.+.++.......  ++..+.+.+||++|++++..++..+++++++++
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTV--GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEE--CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            58999999999999999999998776 456788887665444433  335688999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHH-HHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLL-FYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|..+.. |...+.......+.|+++|+||+|.
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl  132 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR  132 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            9999999999999965 7776655444457899999999995

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.95  E-value=4.7e-27  Score=150.11  Aligned_cols=116  Identities=24%  Similarity=0.358  Sum_probs=98.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +.||+++|++|||||||++++.++.++..+.++.+..+.. .  ...++..+.+.+||++|++.+...+..++.++++++
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-D--IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   77 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-E--EEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence            4699999999999999999999999888888888765432 2  223446788999999999999888888999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+. .|+..+....  .+.|+++|+||+|.
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  117 (175)
T cd01870          78 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL  117 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhc
Confidence            999999999999984 6888886543  37899999999994

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04135 Tc10 TC10 subfamily

Probab=99.95  E-value=5.6e-27  Score=149.61  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=97.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ .  .....++..+.+++||++|++.+...+..++++++++++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   77 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-A--VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   77 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-E--EEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence            5899999999999999999999988777777765432 2  222334567889999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+. .|+..+...  .++.|+++||||+|.
T Consensus        78 v~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl  116 (174)
T cd04135          78 CFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDL  116 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhh
Confidence            99999999999995 688888655  358999999999994

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=6.4e-27  Score=147.45  Aligned_cols=113  Identities=20%  Similarity=0.387  Sum_probs=96.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      +|+++|++|||||||++++.++.+.. ..||.+.++.....     +..+.+.+||++|++.+...+..++++++++++|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v   74 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL-----EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV   74 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe-----CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999987754 46777765433332     2457899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|++++.++..+..|+.++.+.....+.|+++|+||+|.
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  113 (160)
T cd04156          75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL  113 (160)
T ss_pred             EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence            999999999999999998876654458999999999995

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04148 RGK RGK subfamily

Probab=99.95  E-value=1.2e-26  Score=153.49  Aligned_cols=116  Identities=13%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc-cCcEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR-DVHGI   80 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~   80 (135)
                      +||+++|++|||||||++++..+.+. ..+.++.+.+++......  ++..+.+.+||++|++.  .....+++ ++|++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~--~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~i   76 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV--DGEESTLVVIDHWEQEM--WTEDSCMQYQGDAF   76 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE--CCEEEEEEEEeCCCcch--HHHhHHhhcCCCEE
Confidence            58999999999999999999988876 667777764544444433  33678899999999982  33455667 99999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl  118 (221)
T cd04148          77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDL  118 (221)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhc
Confidence            999999999999999999999877655558999999999994

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=1.3e-26  Score=150.63  Aligned_cols=118  Identities=20%  Similarity=0.266  Sum_probs=91.4

Q ss_pred             eEEEEEECCCCCChHHHHH-HHhcCC-----CCCCccCCcce-eEEEEEe------eeecCCceEEEEEEecCCCccccc
Q psy10117          2 KIKILILGPIMAGKTVLAN-ALCDLT-----TAEEYHPTQGV-RIVECEH------SYALDTSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~-~l~~~~-----~~~~~~~t~~~-~~~~~~~------~~~~~~~~~~~~i~d~~g~~~~~~   68 (135)
                      .+||+++|++|||||||+. ++.++.     +...+.||++. +.+....      ....++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999995 665443     34567888863 2222111      012345789999999999875  3


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +...+|++++++++|||+++++||+++. .|++.+....  ++.|+++||||+|..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~  133 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLR  133 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcc
Confidence            4567899999999999999999999996 6999987654  378999999999953

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=1.9e-26  Score=151.98  Aligned_cols=117  Identities=19%  Similarity=0.262  Sum_probs=103.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++.+.+...+.+|.+.++......  .+...+.+++||++|++.+...+..++..+++++
T Consensus         9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFY--TNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE--ECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            58999999999999999999888888888999999877665543  3446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++..+|..+..|+..+....  .++|+++++||+|.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl  125 (215)
T PTZ00132         87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDV  125 (215)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccC
Confidence            9999999999999999999987654  47999999999994

>KOG0070|consensus

Probab=99.95  E-value=1.4e-27  Score=149.20  Aligned_cols=114  Identities=25%  Similarity=0.408  Sum_probs=106.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +++|+++|..++||||+++++..++...+ .||+|.+...+..      ..+++++||.+|+++++..|..||++.+++|
T Consensus        17 e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y------kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY------KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             eEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE------cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            68999999999999999999999887665 8999999888887      5889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||+|.+|++.+.+++.-+..+..+..+.+.|+++++||+|.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~  130 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDL  130 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhc
Confidence            99999999999999999988888887789999999999993

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=1.7e-26  Score=146.57  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++..+.++..+.++.. .   ........+..+.+++||++|++.+...+..+++.++++++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il   76 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E---ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL   76 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c---eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence            4899999999999999999999988765443322 1   12222233467899999999999888888888999999999


Q ss_pred             EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus        77 v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pviiv~nK~Dl  115 (166)
T cd01893          77 VYSVDRPSTLERIRTKWLPLIRRLGV--KVPIILVGNKSDL  115 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEEchhc
Confidence            99999999999984 68888866543  7999999999995

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=99.95  E-value=3.3e-26  Score=145.35  Aligned_cols=118  Identities=19%  Similarity=0.300  Sum_probs=100.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+.+.+.++.+.++.......  .+..+.+.+||++|++.+...+..+++.+++++
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI--KGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            379999999999999999999988877777788876654444433  346678999999999999998899999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+.++..... .+.|+++|+||+|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~~i~v~NK~D~  124 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYAN-NKVITILVGNKIDL  124 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence            99999999999999999998865443 36899999999995

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.95  E-value=2.2e-26  Score=145.23  Aligned_cols=117  Identities=21%  Similarity=0.327  Sum_probs=101.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++....+...+.++.+..+.. .  ...++..+.+.+||++|++.+...+..+++.++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   77 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-K--VVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-E--EEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence            589999999999999999999998887777887654432 1  2334467899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||++++.+|..+..|+..+.+.....+.|+++|+||+|.
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~  117 (164)
T cd04139          78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDL  117 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccc
Confidence            9999999999999999999987655558999999999995

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0395|consensus

Probab=99.95  E-value=3.9e-27  Score=152.64  Aligned_cols=125  Identities=19%  Similarity=0.285  Sum_probs=110.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+|++++|.+|||||+|..++.++.+...|.||++.   .+......++....+.|+|++|++.+..+...+++++++++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied---~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~   79 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIED---SYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL   79 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccc---cceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence            589999999999999999999999999999999994   33333334478899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC---Ccccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG---RGDSSGH  129 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~---~~~~~~~  129 (135)
                      +||++++++||+.+..+.++|.+......+|+++||||+|.   +.++.++
T Consensus        80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ee  130 (196)
T KOG0395|consen   80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEE  130 (196)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHH
Confidence            99999999999999999999977777778999999999994   3555544

>KOG0073|consensus

Probab=99.95  E-value=8.9e-27  Score=142.79  Aligned_cols=114  Identities=24%  Similarity=0.402  Sum_probs=104.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +++|+++|..++||||++++|.+.. .....||.|.++.+...      ..+.+++||.+||..+++.|..||..+||+|
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~------~~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY------KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe------cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            6899999999999999999999854 67788999999888887      7889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|.+|+..|++...-+..+.........|++|++||+|.
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl  129 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDL  129 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcC
Confidence            99999999999999888888887777778999999999994

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.1e-26  Score=144.91  Aligned_cols=112  Identities=27%  Similarity=0.389  Sum_probs=97.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||++++++.. ...+.++.+........      ..+.+.+||+||++.+...+..++++++++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY------KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE------CCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence            68999999999999999999987 34566777776555443      467899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||+++++++..+..|+..+.......+.|+++|+||+|.
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~  112 (158)
T cd00878          74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL  112 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence            999999999999999998877655568999999999994

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=1.7e-26  Score=148.90  Aligned_cols=114  Identities=24%  Similarity=0.332  Sum_probs=96.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+. .+.||.+........      ..+++.+||++|++.++..+..+++++++++
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI------GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            479999999999999999999987654 345666654433333      4578999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|+++++++.....|+.++.+.....+.|+++|+||+|.
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl  130 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA  130 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence            99999999999999999988876554457999999999995

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0083|consensus

Probab=99.95  E-value=4.1e-29  Score=148.79  Aligned_cols=125  Identities=20%  Similarity=0.341  Sum_probs=106.7

Q ss_pred             EEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117          6 LILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF   84 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   84 (135)
                      +++|++++|||+|+-++..+.+. ....+|+|+++...-+  ..++.++++++||+.|||+|++....||+++|+++++|
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli--~~~~~kvklqiwdtagqerfrsvt~ayyrda~alllly   78 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLI--DMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLY   78 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeecccccee--ccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeee
Confidence            37899999999999998888765 4577888987665554  44568999999999999999999999999999999999


Q ss_pred             eCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCcccccccccc
Q psy10117         85 NSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGHAHSL  133 (135)
Q Consensus        85 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~l~~l  133 (135)
                      |+.+..||++++.|+.+|..+.. ..+.++++|||||   ++.+.+++-++|
T Consensus        79 diankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kl  129 (192)
T KOG0083|consen   79 DIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKL  129 (192)
T ss_pred             ecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHH
Confidence            99999999999999999988766 5789999999999   356666554443

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.95  E-value=1.9e-26  Score=150.29  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=98.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||+++++++.+...+.++... +.....  ...+..+.+++||++|+..+..++..+++++|++++|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~--~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv   77 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEY--EVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV   77 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEE--EECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence            6899999999999999999999887777777642 222222  2234668999999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl  116 (198)
T cd04147          78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS  116 (198)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence            999999999999999999887665557999999999995

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.95  E-value=3.1e-26  Score=137.99  Aligned_cols=114  Identities=23%  Similarity=0.360  Sum_probs=83.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ||+|+|++|||||||+++|++....  ..+.+..+.++.....  ........+.+||++|++.+...+..++..+|+++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i   78 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVI--VVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI   78 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEE--EETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEE--EecCCceEEEEEecCccceecccccchhhcCcEEE
Confidence            7999999999999999999998776  1122222322221111  12224445999999999999888888899999999


Q ss_pred             EEEeCCCcchHHHHHH---HHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLL---FYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||++++++|+++..   |+..+.....  ++|+++||||.|
T Consensus        79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~--~~piilv~nK~D  119 (119)
T PF08477_consen   79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK--NIPIILVGNKSD  119 (119)
T ss_dssp             EEEECCGHHHHHHHHHHHHHHHHHHHHSS--CSEEEEEEE-TC
T ss_pred             EEEcCCChHHHHHHHHHHHHHHHHHccCC--CCCEEEEEeccC
Confidence            9999999999988744   5666654433  699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00154 Rab Rab family

Probab=99.94  E-value=3.4e-26  Score=143.16  Aligned_cols=117  Identities=26%  Similarity=0.409  Sum_probs=102.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|+++||||||++++.+..+...+.++.+.++.......  +...+.+.+||+||++.+...+..++++++++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~   78 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI--DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL   78 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE--CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence            58999999999999999999999988877888887766655543  2466889999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |+|++++++++.+..|+..+..... ...|+++++||+|.
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~  117 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDL  117 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccc
Confidence            9999999999999999999877653 47899999999996

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=2e-26  Score=145.12  Aligned_cols=113  Identities=21%  Similarity=0.320  Sum_probs=93.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|+++||||||++++..+.+. .+.||++.++.....      ..+.+++||+||++.++.++..+++.++++++|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTY------KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEE------CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            6899999999999999999887765 356777776544332      457899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|++++.++.....|+..+.+.....+.|+++|+||+|..
T Consensus        74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~  113 (158)
T cd04151          74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP  113 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence            9999988888877777666554444579999999999953

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=2.2e-26  Score=145.94  Aligned_cols=113  Identities=26%  Similarity=0.426  Sum_probs=95.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC------CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT------AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDV   77 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   77 (135)
                      +|+++|++|||||||++++.+...      ...+.+|.+.++..+..      ....+.+||+||++.+..++..+++.+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   74 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV------GNARLKFWDLGGQESLRSLWDKYYAEC   74 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE------CCEEEEEEECCCChhhHHHHHHHhCCC
Confidence            589999999999999999986432      23456777776655444      367999999999999999999999999


Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         78 HGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        78 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++|+|.++++++..+..|+..+.+.....+.|+++++||+|.
T Consensus        75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~  119 (167)
T cd04160          75 HAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL  119 (167)
T ss_pred             CEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence            999999999999999999999998877655568999999999994

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=4.3e-26  Score=142.82  Aligned_cols=113  Identities=21%  Similarity=0.404  Sum_probs=99.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      .|+++|++|||||||++++.+..+...+.|+.+.++.....      ..+.+.+||++|++.++..+..+++.++++++|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v   74 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK------GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV   74 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE------CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999988888999887654433      347899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+++..++.....|+.++.......+.|+++|+||+|.
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  113 (159)
T cd04159          75 VDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDL  113 (159)
T ss_pred             EECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence            999999999988888888876554457899999999995

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.94  E-value=6e-26  Score=145.67  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=99.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +.||+++|++|+|||||++++.+..+...+.++.+..+.. ..  ..++..+.+.+||+||++++...+..++..+++++
T Consensus         1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   77 (180)
T cd04137           1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSK-II--RYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI   77 (180)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEE-EE--EECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence            3699999999999999999999988877777777654321 12  22335678899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++||+++..+|+.+..|...+.+.....+.|+++++||+|.
T Consensus        78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  118 (180)
T cd04137          78 LVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL  118 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence            99999999999999999988887655557899999999995

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00157 Rho Rho (Ras homology) family

Probab=99.94  E-value=8.2e-26  Score=143.67  Aligned_cols=115  Identities=20%  Similarity=0.306  Sum_probs=94.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++....+..   ....++..+.+++||+||++.+......+++.++++++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~   77 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSA---TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE---EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence            589999999999999999999998866666666543322   22334567899999999999888888888999999999


Q ss_pred             EEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|... ..|+..+.....  +.|+++|+||+|.
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl  116 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYCP--NVPIILVGTKIDL  116 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC--CCCEEEEEccHHh
Confidence            9999999999877 568888766544  7999999999993

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=6.5e-26  Score=146.68  Aligned_cols=114  Identities=26%  Similarity=0.352  Sum_probs=97.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+. .+.+|.+.....+..      ....+.+||+||++.++..+..+++++++++
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTI------GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            478999999999999999999987763 566777765444433      3478999999999999888899999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|.++.++|.....|+..+.+.....+.|+++++||+|.
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl  132 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL  132 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence            99999999999999999998876555557999999999994

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0393|consensus

Probab=99.94  E-value=2.5e-27  Score=151.33  Aligned_cols=117  Identities=21%  Similarity=0.320  Sum_probs=104.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec-CCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL-DTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      .+|++++|+.++|||+|+..+..+.++..|.||+=.++   ...... ++..+.+.+|||.||+.|..++...|.++|.+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny---s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY---SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc---eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            47999999999999999999999999999999987433   333444 47899999999999999998888899999999


Q ss_pred             EEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         81 IFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        81 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++||++.+++||+++ ..|+.++..+.+  +.|+++||+|.|.+
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp--~vpiiLVGtk~DLr  122 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP--NVPIILVGTKADLR  122 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC--CCCEEEEeehHHhh
Confidence            999999999999998 789999988875  89999999999976

>cd04129 Rho2 Rho2 subfamily

Probab=99.94  E-value=1.2e-25  Score=145.34  Aligned_cols=116  Identities=25%  Similarity=0.367  Sum_probs=96.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +.||+++|++|+|||||++++..+.+...+.++....+..   ....++..+.+.+||++|++.+......+++++++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l   77 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT---DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL   77 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence            4699999999999999999999888877777776654322   2222346678999999999988887778889999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++||+++.++|+.+. .|+..+.+...  +.|+++||||+|.
T Consensus        78 lv~~i~~~~s~~~~~~~~~~~i~~~~~--~~piilvgnK~Dl  117 (187)
T cd04129          78 IGFAVDTPDSLENVRTKWIEEVRRYCP--NVPVILVGLKKDL  117 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEeeChhh
Confidence            999999999999996 69999876543  7999999999995

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.94  E-value=1.4e-25  Score=141.03  Aligned_cols=116  Identities=21%  Similarity=0.297  Sum_probs=98.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|++|||||||++++.+..+...+.++.+. ......  ..++..+.+++||+||++.+...+..+++.++++++|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   77 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTI--VVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV   77 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEE--EECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence            6899999999999999999988877777777663 222222  2333568899999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ||++++++++++..|...+.........|+++|+||+|.
T Consensus        78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  116 (160)
T cd00876          78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL  116 (160)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence            999999999999999998877655458999999999995

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0071|consensus

Probab=99.93  E-value=1.6e-25  Score=134.25  Aligned_cols=126  Identities=21%  Similarity=0.354  Sum_probs=110.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +++|+.+|..++||||++..+.-+.. ...-||+|++..+.++      ..+++++||.+|+++.++.|.+||....++|
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty------kN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe------eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            57999999999999999999998654 4566999999888887      7899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC-------Cccccccccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG-------RGDSSGHAHSLR  134 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~-------~~~~~~~l~~l~  134 (135)
                      ||.|..+.+..++++.-+..+.+++...+.|++|.+||+|.       ++-+..+++.+|
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r  149 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIR  149 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccccc
Confidence            99999999999999888888888888889999999999993       234445666544

>KOG0097|consensus

Probab=99.93  E-value=1.3e-25  Score=135.24  Aligned_cols=117  Identities=21%  Similarity=0.327  Sum_probs=105.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +|.+++|+-|+|||+|+..+...++-.+-..++|+.+-+..+++  .+.+++++|||+.|+++|+.....||+.+.+.++
T Consensus        12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev--sgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe--cCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            68999999999999999999998888777788998776666644  4589999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++.++++..+..|+.+..+... ++..++++|||.|.
T Consensus        90 vyditrrstynhlsswl~dar~ltn-pnt~i~lignkadl  128 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADL  128 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhh
Confidence            9999999999999999999866544 57899999999993

>KOG0075|consensus

Probab=99.93  E-value=5.9e-26  Score=137.07  Aligned_cols=114  Identities=23%  Similarity=0.445  Sum_probs=106.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++.+.++|..++||||+++.+..+.+.....||.|.+.+.++-      ..+.+.+||.+|+.+|+.+|+.|++.+++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tk------gnvtiklwD~gGq~rfrsmWerycR~v~aiv   93 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTK------GNVTIKLWDLGGQPRFRSMWERYCRGVSAIV   93 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEecc------CceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence            5789999999999999999999999999999999999887765      7789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|+|..+++.+...+.-+..+...+....+|++|+|||.|
T Consensus        94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d  133 (186)
T KOG0075|consen   94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKID  133 (186)
T ss_pred             EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccccc
Confidence            9999999999988888888888888888999999999999

>KOG4252|consensus

Probab=99.93  E-value=4.8e-27  Score=146.27  Aligned_cols=127  Identities=20%  Similarity=0.379  Sum_probs=111.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+|++++|..++||||++++++.+.+..++..++|.++..-+.++.  ...+.+.+||++|++.|..+...||++|.+.+
T Consensus        20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~--~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL--IEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh--HHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            3799999999999999999999999999999999998877666543  36678899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCccccccccc
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGHAHS  132 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~l~~  132 (135)
                      +||+-+|..||+.+.+|...+.+...  .+|.++|-||+|   +...+..+.+.
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~--~IPtV~vqNKIDlveds~~~~~evE~  149 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETE--RIPTVFVQNKIDLVEDSQMDKGEVEG  149 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhc--cCCeEEeeccchhhHhhhcchHHHHH
Confidence            99999999999999999999977765  899999999999   22334444443

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1.8e-24  Score=142.72  Aligned_cols=117  Identities=26%  Similarity=0.351  Sum_probs=101.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|+.|||||||++++.++.+...+.++++..+.........  ..+++.+||++|+++++.++..|+.+++++++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR--RNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC--CEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            7999999999999999999999999998999988766555554322  27889999999999999999999999999999


Q ss_pred             EEeCCCc-chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVP-GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||.++. .+++....|...+..... ...|+++++||+|.
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl  123 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDL  123 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEeccccc
Confidence            9999994 455666899999877664 46999999999994

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=5.8e-24  Score=135.56  Aligned_cols=114  Identities=23%  Similarity=0.369  Sum_probs=95.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+. .+.++.|.+......      ....+.+||++|+..+...+..+++++++++
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~------~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS------DGFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            478999999999999999999987553 456777765544443      3468999999999988888899999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|+++..++.....|+..+.......++|+++++||+|.
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL  127 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence            99999999999988888887766544457999999999995

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.90  E-value=4.7e-23  Score=134.71  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccC-cEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDV-HGIIF   82 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~i~   82 (135)
                      +|+++|++|||||||+++|..+.+..++.++ ..+...+..  ..+.....+.+||+||+++++..+..+++.+ +++||
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~--~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFIL--NSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEe--ecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence            6899999999999999999998776655333 333322222  1113457899999999999999999999998 99999


Q ss_pred             EEeCCCc-chHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         83 VFNSGVP-GHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      |+|..+. +++..+..|+..+.....  ...+|+++++||+|.
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl  121 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDL  121 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhh
Confidence            9999997 678888777766543321  247999999999994

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0074|consensus

Probab=99.90  E-value=2.3e-23  Score=125.26  Aligned_cols=114  Identities=24%  Similarity=0.422  Sum_probs=102.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|-.++||||+++.|.+. .+...-||.|++...+...     ..+++++||.+|+...+..|..||.+.|++|
T Consensus        17 EirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~-----g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   17 EIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYD-----GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             eEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeec-----CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            689999999999999999999884 4566779999988777663     6789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ||+|.+|...|+++..-+.++.........|+++.+||+|
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQd  130 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQD  130 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhH
Confidence            9999999999999988888887777778999999999999

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.89  E-value=6.5e-22  Score=123.43  Aligned_cols=118  Identities=24%  Similarity=0.307  Sum_probs=96.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|+|||||++++....++..+.++.+.++.......  ++..+.+.+||+||+..+...+..+++.+++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   78 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE--DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL   78 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE--CCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence            479999999999999999999999877777777777665544433  234478999999999999999999999999999


Q ss_pred             EEEeCCCc-chHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVP-GHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .++|+... .++.... .|...+...... +.|+++++||+|.
T Consensus        79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~  120 (161)
T TIGR00231        79 RVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDL  120 (161)
T ss_pred             EEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccC
Confidence            99999887 6776665 777777665543 7899999999995

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.89  E-value=5.2e-22  Score=127.18  Aligned_cols=114  Identities=22%  Similarity=0.235  Sum_probs=84.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC-------CCCCccC------CcceeEEEEEeeeec---CCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLT-------TAEEYHP------TQGVRIVECEHSYAL---DTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|+++||||||++++++..       +...+.+      +.|.++.........   ++..+.+++|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1111222      223433322222211   4567889999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+..+++.+|++++|||+++..++.....|.... .    .++|+++|+||+|.
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl  131 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDL  131 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCC
Confidence            99999999999999999999887777766665432 1    26799999999995

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.88  E-value=1.5e-21  Score=124.02  Aligned_cols=114  Identities=12%  Similarity=0.051  Sum_probs=80.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHhhc--
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAFQR--   75 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~--   75 (135)
                      +|+++|++|||||||++++.+......  ...+..........     +....+++||+||..    ..+.+...+++  
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-----DDGRSFVVADIPGLIEGASEGKGLGHRFLRHI   76 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-----CCCCeEEEEecCcccCcccccCCchHHHHHHH
Confidence            689999999999999999997653211  11222221112211     122589999999963    22233444444  


Q ss_pred             -cCcEEEEEEeCCCc-chHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         76 -DVHGIIFVFNSGVP-GHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        76 -~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                       .+|++++|+|++++ ++++.+..|++.+..... ....|+++|+||+|.
T Consensus        77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  126 (170)
T cd01898          77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL  126 (170)
T ss_pred             HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence             59999999999999 799999999998876532 236899999999994

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.87  E-value=2.1e-21  Score=126.16  Aligned_cols=112  Identities=20%  Similarity=0.241  Sum_probs=81.8

Q ss_pred             EEEEECCCCCChHHHHHHHhc--CCCCCCc------------cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCD--LTTAEEY------------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      +|+++|.+++|||||+++++.  +.+...+            .++.|.++........  .....+++||+||++.|...
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT--YKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE--ECCEEEEEEECCCcHHHHHH
Confidence            799999999999999999997  4433221            2234443332222222  25678999999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+++++|++++|||+++.. +.....|+..+..    .++|+++|+||+|.
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl  129 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDR  129 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCC
Confidence            999999999999999998742 3444455555432    26899999999995

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04171 SelB SelB subfamily

Probab=99.87  E-value=3.5e-21  Score=121.46  Aligned_cols=110  Identities=19%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC---CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT---TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHG   79 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   79 (135)
                      +.|+++|+++||||||+++|.+..   ++....++.............   ....+++||+||++++......+++.+|+
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~ad~   77 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP---SGKRLGFIDVPGHEKFIKNMLAGAGGIDL   77 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec---CCcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence            368999999999999999999642   222222333322222222211   14589999999999887767778889999


Q ss_pred             EEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         80 IIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        80 ~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|+|+++   .++.+.+    ..+. ..+  ..|+++++||+|.
T Consensus        78 ii~V~d~~~~~~~~~~~~~----~~~~-~~~--~~~~ilv~NK~Dl  116 (164)
T cd04171          78 VLLVVAADEGIMPQTREHL----EILE-LLG--IKRGLVVLTKADL  116 (164)
T ss_pred             EEEEEECCCCccHhHHHHH----HHHH-HhC--CCcEEEEEECccc
Confidence            999999987   2333322    2221 111  2499999999995

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.85  E-value=3.4e-20  Score=117.59  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCc--cCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chHH
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWPA   72 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~   72 (135)
                      +|+++|++|+|||||++++.+..+....  ..|.+.......      ...+.+++|||||......         ....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   75 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD------YKYLRWQVIDTPGLLDRPLEERNTIEMQAITA   75 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc------cCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence            7999999999999999999998664221  112222221111      1357899999999742110         0011


Q ss_pred             hhccCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....++++++|+|.++..++  +....|+..+....  .+.|+++|+||+|.
T Consensus        76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl  125 (168)
T cd01897          76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDL  125 (168)
T ss_pred             HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEcccc
Confidence            12236899999999987654  66677888876543  37899999999995

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=99.85  E-value=1.8e-20  Score=122.50  Aligned_cols=113  Identities=17%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc---------ccchH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF---------ESVWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~   71 (135)
                      ++|+++|++|||||||++++++.....  .+.++.......+..    + ....+.+||+||....         .... 
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL----P-DGREVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe----c-CCceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            689999999999999999999976432  223333332222221    1 2237899999997321         1111 


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+..+|++++|+|++++.++..+..|.+.+.... ..+.|+++|+||+|.
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl  165 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDL  165 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEcccc
Confidence            13568999999999999998888877777665433 246899999999995

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.85  E-value=2.8e-20  Score=114.96  Aligned_cols=114  Identities=24%  Similarity=0.367  Sum_probs=89.4

Q ss_pred             EECCCCCChHHHHHHHhcCCC-CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEe
Q psy10117          7 ILGPIMAGKTVLANALCDLTT-AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN   85 (135)
Q Consensus         7 viG~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (135)
                      ++|++|+|||||++++.+... .....++. .+.......  .......+.+||++|...+......+++.++++++|+|
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   77 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIE--VDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD   77 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEE--ECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE
Confidence            589999999999999999776 44455555 554444443  22357789999999998888777889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         86 SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        86 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++++.++..+..|.............|+++++||+|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~  115 (157)
T cd00882          78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP  115 (157)
T ss_pred             CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence            99999999888874444334444589999999999953

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG1673|consensus

Probab=99.85  E-value=2.4e-21  Score=118.27  Aligned_cols=117  Identities=21%  Similarity=0.353  Sum_probs=103.7

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      +.+||-++|++..|||||+-.+.++.+...+..+.|+++...+..  ..+..+.+.|||.+|++++..+.+....++.++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~--i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVS--IRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEE--ecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            368999999999999999999999998888888899988877764  445889999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|+||+++++++..+.+|+.+....++ ..+|+ +||+|-|
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiPi-lvGTKyD  135 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNK-TAIPI-LVGTKYD  135 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCC-ccceE-EeccchH
Confidence            999999999999999999999876554 35665 5699998

>PTZ00099 rab6; Provisional

Probab=99.85  E-value=2.2e-20  Score=119.58  Aligned_cols=95  Identities=20%  Similarity=0.354  Sum_probs=82.5

Q ss_pred             CCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHh
Q psy10117         25 LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVT  104 (135)
Q Consensus        25 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  104 (135)
                      +.+.+.+.||+|.++.......  ++..+.+.|||++|+++++.++..++++++++++|||++++++|+.+..|+..+.+
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~--~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~   80 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYL--DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN   80 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEE--CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3566778999998886665543  34679999999999999999999999999999999999999999999999999977


Q ss_pred             ccCCCCceEEEEEecCCC
Q psy10117        105 QSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus       105 ~~~~~~~p~ivv~nK~D~  122 (135)
                      ... .++|++|||||+|.
T Consensus        81 ~~~-~~~piilVgNK~DL   97 (176)
T PTZ00099         81 ERG-KDVIIALVGNKTDL   97 (176)
T ss_pred             hcC-CCCeEEEEEECccc
Confidence            643 47899999999995

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.85  E-value=5.1e-21  Score=118.47  Aligned_cols=94  Identities=22%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-----ccccchHHhhccCc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-----KFESVWPAFQRDVH   78 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~   78 (135)
                      ||+++|++|||||||++++.+...  .+.+|.+.++              .-.+||+||+.     .++.+. ..++++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~--------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY--------------NDGAIDTPGEYVENRRLYSALI-VTAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE--------------cCeeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence            899999999999999999998764  2344443321              11689999972     333333 3578999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|||++++.++.. ..|++..       ..|+++|+||+|.
T Consensus        65 ~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl  100 (142)
T TIGR02528        65 VIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDL  100 (142)
T ss_pred             EEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeecc
Confidence            9999999999998755 3454432       2399999999995

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.84  E-value=3.1e-20  Score=117.69  Aligned_cols=114  Identities=15%  Similarity=0.057  Sum_probs=79.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      .|+++|++|+|||||+++|..+.+.....++.............. .....+.+||+||++.+...+..++..+|++++|
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v   80 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHEAFTNMRARGASLTDIAILV   80 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence            589999999999999999998876554333333322222221110 1357899999999999988888899999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|.++...-.. ...+..+..    .+.|+++|+||+|..
T Consensus        81 ~d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~  115 (168)
T cd01887          81 VAADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKP  115 (168)
T ss_pred             EECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecc
Confidence            99987532111 111222221    268999999999953

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0096|consensus

Probab=99.84  E-value=1.6e-20  Score=118.02  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=105.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+|++++|+.|.|||+++++...+++...+.+|.|.......+..  +...++++.||+.|+|.+-.....||-...+++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t--n~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT--NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec--ccCcEEEEeeecccceeecccccccEEecceeE
Confidence            579999999999999999999999999999999998766555432  224799999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++||++..-+..++..|..++.+.+.  ++|++++|||.|
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvD  125 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVD  125 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc--CCCeeeecccee
Confidence            99999999999999999999988776  799999999999

>KOG3883|consensus

Probab=99.84  E-value=7.7e-20  Score=111.45  Aligned_cols=117  Identities=17%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCccc-ccchHHhhccCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDHKF-ESVWPAFQRDVH   78 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~   78 (135)
                      .|++++|-.++|||+++..+..+...  ..+.||+...   |...+ ...+..-.+.++||.|.... ..+-.+|++-+|
T Consensus        10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi---Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen   10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI---YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh---eeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            58999999999999999998876544  4577888763   33333 34456778999999997766 667778999999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++||+..|++||+.+...-++|.+.+....+|+++++||+|.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr  130 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDR  130 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhc
Confidence            99999999999999988777777777777778999999999994

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.84  E-value=9.8e-20  Score=130.74  Aligned_cols=111  Identities=20%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch--------HH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW--------PA   72 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~   72 (135)
                      .+||+++|++|||||||++++++.... ....++.+.++.......    ....+++|||||...+....        ..
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~----~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL----NGILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE----CCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            368999999999999999999986432 122233334333333322    34577999999986554322        35


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++|++++|||.+++.+++..  |+..+..    .+.|+++|+||+|.
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl  322 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDL  322 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccC
Confidence            67899999999999998887765  7776632    26799999999995

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.84  E-value=6.5e-20  Score=128.36  Aligned_cols=113  Identities=19%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCc---------ccccchH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH---------KFESVWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~   71 (135)
                      ++|+++|.+++|||||+|+|++.....  .+.+|.+........  .   ....+.+|||+|..         .|+..+ 
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~--~---~~~~i~l~DT~G~~~~l~~~lie~f~~tl-  263 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL--P---DGGEVLLTDTVGFIRDLPHELVAAFRATL-  263 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe--C---CCceEEEEecCcccccCCHHHHHHHHHHH-
Confidence            689999999999999999999976432  233444443322222  1   23478999999962         222221 


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.++|++++|+|++++.+++.+..|...+.... ..+.|+++|+||+|.
T Consensus       264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl  313 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDL  313 (351)
T ss_pred             HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecC
Confidence            24779999999999999988888776665554332 247899999999995

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0076|consensus

Probab=99.83  E-value=7.6e-21  Score=117.90  Aligned_cols=115  Identities=26%  Similarity=0.415  Sum_probs=98.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC-------CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT-------TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQ   74 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~   74 (135)
                      .+.++++|+.++|||||+.......       .+..-.+|+|.+..++..      ....+.+||..|++..+++|..||
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v------~~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV------CNAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee------ccceeEEEEcCChHHHHHHHHHHH
Confidence            3678999999999999998766432       123345777877666665      467899999999999999999999


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+|++++++|.++++.|+....-++.+..+....++|+++.+||.|.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~  138 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDL  138 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhh
Confidence            999999999999999999999888888888877889999999999993

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.83  E-value=1.1e-19  Score=115.95  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             EECCCCCChHHHHHHHhcCCCC-CC-ccCCcceeEEEEEeeeecCCc-eEEEEEEecCCCcc----cccch---HHhhcc
Q psy10117          7 ILGPIMAGKTVLANALCDLTTA-EE-YHPTQGVRIVECEHSYALDTS-KTEIELWDTSGDHK----FESVW---PAFQRD   76 (135)
Q Consensus         7 viG~~~~GKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~~---~~~~~~   76 (135)
                      ++|++|||||||++++.+.... .. ...|..........      . ...+.+||+||...    .+.+.   ..++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   74 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEV------PDGARIQVADIPGLIEGASEGRGLGNQFLAHIRR   74 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEc------CCCCeEEEEeccccchhhhcCCCccHHHHHHHhc
Confidence            5899999999999999997641 11 12222322222221      2 56789999999632    22222   335678


Q ss_pred             CcEEEEEEeCCCc------chHHHHHHHHHHHHhccCC------CCceEEEEEecCCC
Q psy10117         77 VHGIIFVFNSGVP------GHISELLLFYDYFVTQSDL------NNHKCLLIDNVKPG  122 (135)
Q Consensus        77 ~~~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~p~ivv~nK~D~  122 (135)
                      ++++++|+|.++.      .+++++..|...+......      .+.|+++|+||+|.
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl  132 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDL  132 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhc
Confidence            9999999999988      5788888888887654431      47899999999995

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK04213 GTP-binding protein; Provisional

Probab=99.82  E-value=1.8e-20  Score=122.23  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC-----------Ccccccch
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG-----------DHKFESVW   70 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~   70 (135)
                      .++|+++|++|||||||++++.+..+.....++.+..  ......    .  .+.+||+||           +++++..+
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~----~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDW----G--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEee----c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4689999999999999999999987654444443322  222211    1  589999999           56677766


Q ss_pred             HHhhc-c---CcEEEEEEeCCCcchHHHH-HHHHH--------HHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQR-D---VHGIIFVFNSGVPGHISEL-LLFYD--------YFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~-~---~~~~i~v~d~~~~~s~~~~-~~~~~--------~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++. .   ++++++|+|.++.   .++ ..|..        ++.......+.|+++|+||+|.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl  142 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSF---IEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK  142 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccc---cccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence            67765 3   4577777776542   222 22210        0111111136899999999995

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=3.5e-19  Score=129.29  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=76.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~   73 (135)
                      .+|+++|.++||||||++++++.... ....++.+.+........    ....+.+|||||.+.        +......+
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            58999999999999999999987542 222333333222222221    234689999999763        33345567


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++.+|++++|+|+++..++.. ..|...+..    .+.|+++|+||+|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl  158 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDD  158 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccC
Confidence            889999999999998766532 334433322    36899999999995

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.82  E-value=2.5e-19  Score=112.35  Aligned_cols=105  Identities=21%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             EECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc------chHHhhc--cCc
Q psy10117          7 ILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES------VWPAFQR--DVH   78 (135)
Q Consensus         7 viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~   78 (135)
                      ++|++|+|||||++++.+..+.....++.+..........    ....+.+|||||+..+..      ++..++.  +++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d   76 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL----GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD   76 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee----CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence            5899999999999999987654433344333332222322    235789999999876654      3456665  999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|+|.++.+..   ..|+..+..    .+.|+++|+||+|.
T Consensus        77 ~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl  113 (158)
T cd01879          77 LIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDE  113 (158)
T ss_pred             EEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhh
Confidence            99999999876543   344444432    26899999999995

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.81  E-value=5.4e-19  Score=122.96  Aligned_cols=115  Identities=12%  Similarity=0.070  Sum_probs=81.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-Cc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccchHH---h
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-EY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVWPA---F   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~   73 (135)
                      ..|.++|.|+||||||+++++...... .+ ..|.......+..     .....+.+||+||.-.    ...+...   +
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~-----~~~~~~~i~D~PGli~ga~~~~gLg~~flrh  233 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV-----DDYKSFVIADIPGLIEGASEGAGLGHRFLKH  233 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe-----CCCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence            368899999999999999999865321 12 1222222222222     1334789999999632    2223333   4


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      +++++++++|+|+++.++++.+..|..++..+.. +.+.|+++|+||+|.
T Consensus       234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL  283 (335)
T PRK12299        234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL  283 (335)
T ss_pred             hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence            4579999999999998899999999999977643 347899999999995

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.81  E-value=1.6e-18  Score=108.41  Aligned_cols=109  Identities=19%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc--------hHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV--------WPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~   73 (135)
                      ++|+++|++|+|||||++++.+.... ....++....+......  .  ....+.+||+||...+...        ...+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~   77 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID--I--GGIPVRLIDTAGIRETEDEIEKIGIERAREA   77 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE--e--CCEEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence            68999999999999999999987532 11122222222222221  1  3467899999997655322        2245


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+++++++|+|++++.+......|..       ....|+++|+||+|.
T Consensus        78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~  119 (157)
T cd04164          78 IEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDL  119 (157)
T ss_pred             HhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhc
Confidence            679999999999998887766654433       237899999999994

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.81  E-value=6.7e-19  Score=126.93  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=77.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc--------hHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV--------WPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~   73 (135)
                      ++|+++|.+++|||||++++++.... ....+....++.......    ....+.+|||+|...+...        ...+
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL----DGIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE----CCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            68999999999999999999987532 222232233332322222    3457899999998655432        2236


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|+|.+++.+++....|..       ..+.|+++|+||+|.
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL  333 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADL  333 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhc
Confidence            789999999999999888876655543       236899999999995

>KOG1707|consensus

Probab=99.81  E-value=3.4e-19  Score=127.98  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=96.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+.|+||||||-.+...++++...+-..    .+.++.+..+..+...|.|++..+.-+.....-++.|++++
T Consensus         9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~----~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP----RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ceEEEEECCCCccHHHHHHHHHhhhccccccccCC----ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            47999999999999999999999988765544333    44555555557777999999877666666677889999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccC-CCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSD-LNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~p~ivv~nK~D~~  123 (135)
                      ++|+++++++++.+ .+|+..+++..+ ..+.|+|+||||+|..
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~  128 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG  128 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence            99999999999999 689999977542 2479999999999954

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.80  E-value=8.8e-19  Score=129.74  Aligned_cols=115  Identities=19%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC-------CCCCc------cCCcceeEEEEEeee--e-cCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLT-------TAEEY------HPTQGVRIVECEHSY--A-LDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~-------~~~~~------~~t~~~~~~~~~~~~--~-~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +++++|+.++|||||+++|+...       +...+      +.+.|.++.......  . .++..+.+++|||||++.|.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            79999999999999999998642       11111      123355544333322  1 13467899999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+..+++.+|++++|+|+++..++.....|...+.     .+.|+++|+||+|..
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~  135 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLP  135 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence            999999999999999999999877777766655432     267999999999953

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15494 era GTPase Era; Provisional

Probab=99.80  E-value=1.5e-18  Score=121.18  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchH-------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWP-------   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~-------   71 (135)
                      .+|+++|.+|||||||+++|.+..+.   +....|.......+..      ....+.+|||||... +..+..       
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~------~~~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL------KDTQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe------CCeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            48999999999999999999987654   2233333321111121      335789999999843 222221       


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++++|++++|+|..+  +|.... .|+..+...    +.|.++|+||+|.
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl  172 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDI  172 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcC
Confidence            23679999999999654  566664 455555322    3566789999995

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.80  E-value=9.8e-19  Score=131.15  Aligned_cols=113  Identities=19%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      .+|+++|+.++|||||+++|....+.....+++......+......++....+++|||||++.|..++..+++.+|++++
T Consensus       245 p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaIL  324 (742)
T CHL00189        245 PIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAIL  324 (742)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEE
Confidence            47999999999999999999987665443333433333333333323356899999999999999999999999999999


Q ss_pred             EEeCCCcc---hHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPG---HISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |+|+++..   +++.+.    .+.    ..++|+++++||+|..
T Consensus       325 VVDA~dGv~~QT~E~I~----~~k----~~~iPiIVViNKiDl~  360 (742)
T CHL00189        325 IIAADDGVKPQTIEAIN----YIQ----AANVPIIVAINKIDKA  360 (742)
T ss_pred             EEECcCCCChhhHHHHH----HHH----hcCceEEEEEECCCcc
Confidence            99998743   333332    221    1368999999999953

>cd04167 Snu114p Snu114p subfamily

Probab=99.79  E-value=3.4e-18  Score=112.62  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC-----------------ccCCcceeEEE--EEeeee-cCCceEEEEEEecCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE-----------------YHPTQGVRIVE--CEHSYA-LDTSKTEIELWDTSGD   63 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~-----------------~~~t~~~~~~~--~~~~~~-~~~~~~~~~i~d~~g~   63 (135)
                      +|+++|+.++|||||+.+|+.......                 .....+.++..  ...... .++..+.+++||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987543211                 01112222211  111111 1345689999999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.|......++..+|++++|+|.++..++. ...|+..+..    .+.|+++|+||+|.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~  135 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDR  135 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECccc
Confidence            999888888999999999999998876653 2444444422    24899999999994

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG4423|consensus

Probab=99.79  E-value=3.8e-22  Score=125.03  Aligned_cols=119  Identities=20%  Similarity=0.364  Sum_probs=103.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +|++|+|+.|+|||+++.++.+..+...|..++|.++.-..... .+...+++++||..||++|..+..-||+.+++..+
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            68999999999999999999999998889999998665433332 33467889999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCC---CCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDL---NNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~  122 (135)
                      |||+++..+|+.+..|.+++.....+   .+.|+++.+||||.
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~  147 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ  147 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc
Confidence            99999999999999999998765443   37899999999994

>PRK11058 GTPase HflX; Provisional

Probab=99.79  E-value=3.3e-18  Score=122.33  Aligned_cols=114  Identities=18%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--cccchHHh-----
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--FESVWPAF-----   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~-----   73 (135)
                      .+|+++|.++||||||+|+|++......  ...|.+.....+..  .   ....+.+|||+|..+  ....+..|     
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~---~~~~~~l~DTaG~~r~lp~~lve~f~~tl~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--A---DVGETVLADTVGFIRHLPHDLVAAFKATLQ  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--C---CCCeEEEEecCcccccCCHHHHHHHHHHHH
Confidence            4799999999999999999998654322  22333332222222  1   122678999999733  22233333     


Q ss_pred             -hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 -QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                       ++++|++++|+|++++.+++.+..|...+.... ..+.|+++|+||+|.
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL  321 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDM  321 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccC
Confidence             578999999999999988877755444333222 236899999999995

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.79  E-value=4.1e-18  Score=109.68  Aligned_cols=111  Identities=17%  Similarity=0.084  Sum_probs=79.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCC----------------cceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPT----------------QGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|.+|+|||||++++++..........                ..........    +.....+.+||+||...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~liDtpG~~~~~   76 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----EWPDRRVNFIDTPGHEDFS   76 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----eeCCEEEEEEeCCCcHHHH
Confidence            5899999999999999999987655332111                1111111111    1135689999999999888


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+..+++.+|++++|+|..+..+.. ...++..+..    .+.|+++|+||+|..
T Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~  127 (189)
T cd00881          77 SEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRV  127 (189)
T ss_pred             HHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCc
Confidence            88889999999999999998765443 2344444432    378999999999953

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.79  E-value=3.7e-18  Score=118.66  Aligned_cols=115  Identities=13%  Similarity=0.094  Sum_probs=80.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-Cc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccchHHhh--
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-EY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVWPAFQ--   74 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~--   74 (135)
                      ..|+++|.++||||||+++++...+.. .+ ..|..........     .....+.+||+||...    ...+...|+  
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~-----~~~~~~~i~D~PGli~~a~~~~gLg~~flrh  232 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV-----DDGRSFVIADIPGLIEGASEGAGLGHRFLKH  232 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe-----CCceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence            468999999999999999999865321 11 1222222222222     1236889999999642    223334444  


Q ss_pred             -ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         75 -RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 -~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                       ++++++++|+|+++.   ++++.+..|.+++..+.. ..+.|+++|+||+|.
T Consensus       233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL  285 (329)
T TIGR02729       233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDL  285 (329)
T ss_pred             HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccC
Confidence             469999999999987   678888889888876532 347899999999995

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=3.9e-18  Score=122.86  Aligned_cols=109  Identities=21%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~   73 (135)
                      .+|+++|.+|||||||+++|.+.... ....+..+.+........    ....+.+|||||.+.        +......+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~----~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   77 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW----LGREFILIDTGGIEPDDDGFEKQIREQAELA   77 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE----CCcEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            58999999999999999999987642 111222222222222221    337899999999876        23334556


Q ss_pred             hccCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.++|++++|+|.+++.+.  ..+..|+...       +.|+++|+||+|.
T Consensus        78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-------~~piilv~NK~D~  121 (435)
T PRK00093         78 IEEADVILFVVDGRAGLTPADEEIAKILRKS-------NKPVILVVNKVDG  121 (435)
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-------CCcEEEEEECccC
Confidence            7899999999999875443  2334454432       6899999999994

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.79  E-value=4.1e-18  Score=109.38  Aligned_cols=111  Identities=16%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----------ccccchH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----------KFESVWP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~   71 (135)
                      .++|+++|++|+|||||++++.+..+...+.++.+.+........  +   -.+.+||+||..          .+..+..
T Consensus        18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N---DGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C---CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            468999999999999999999997644444445443221111111  1   168999999942          2333344


Q ss_pred             Hhhcc---CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRD---VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .|++.   ++++++|+|.+++-+..... ++..+. .   .+.|+++++||+|.
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~-~---~~~pviiv~nK~D~  141 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR-E---RGIPVLIVLTKADK  141 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH-H---cCCCEEEEEECccc
Confidence            55553   57999999998765544432 223332 1   26899999999995

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=3.4e-18  Score=124.18  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----------ccccch-
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----------KFESVW-   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~-   70 (135)
                      +||+++|.++||||||+++|++.... ....++.+.+........    ....+.+|||+|..          .+..+. 
T Consensus       212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~----~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL----GGKTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE----CCEEEEEEECCCccccccccchHHHHHHHHH
Confidence            68999999999999999999987642 222233333332222222    23456899999953          222222 


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+++++|++++|+|++++.++..+. ++..+..    .+.|+++|+||+|.
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl  334 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDL  334 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECccc
Confidence            23578999999999999988877664 4444432    36899999999995

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.78  E-value=5.8e-19  Score=112.39  Aligned_cols=114  Identities=20%  Similarity=0.277  Sum_probs=73.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHh---hccCcEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAF---QRDVHGI   80 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~---~~~~~~~   80 (135)
                      .|+++||+|+|||+|+..|..+...++..+. ..+. .+..   .......+.+.|+||+++.+......   ...+.++
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~---~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNV---NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCG---SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEe---ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            5899999999999999999998665443222 3222 1111   22345578999999999888755544   7789999


Q ss_pred             EEEEeCCC-cchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGV-PGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~  122 (135)
                      |||+|.+. +..+..+.+++-.+....  ....+|++|++||+|.
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl  124 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL  124 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence            99999874 445666655555444322  2347999999999994

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01889 SelB_euk SelB subfamily

Probab=99.78  E-value=2.5e-18  Score=111.50  Aligned_cols=115  Identities=15%  Similarity=0.080  Sum_probs=74.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC----CCCC-----ccCCcceeEEEEEeeee--------cCCceEEEEEEecCCCcc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT----TAEE-----YHPTQGVRIVECEHSYA--------LDTSKTEIELWDTSGDHK   65 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~----~~~~-----~~~t~~~~~~~~~~~~~--------~~~~~~~~~i~d~~g~~~   65 (135)
                      +||+++|++++|||||+++++...    ....     ...|.+..+..+.....        .......+++||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999999731    1111     12344444444443211        123467899999999866


Q ss_pred             cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         66 FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +........+.+|++++|+|.++.........+..  ...   .+.|+++++||+|.
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl  132 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDL  132 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECccc
Confidence            53333334567899999999987654443333321  111   15799999999995

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0072|consensus

Probab=99.78  E-value=2.9e-19  Score=107.92  Aligned_cols=114  Identities=24%  Similarity=0.353  Sum_probs=95.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +.+|+++|..|+|||+++.++.-++. ....|++|.+......      .+.++++||..|+...++.|..||.+.+++|
T Consensus        18 e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y------KNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   18 EMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY------KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc------ccccceeeEccCcccccHHHHHHhcccceEE
Confidence            57899999999999999988877654 3466888887665555      6789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|.+|.....-....+-.+.++..+.+..+++++||+|.
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~  131 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY  131 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence            99999998877666555556666666778999999999993

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.78  E-value=4.1e-18  Score=125.86  Aligned_cols=113  Identities=15%  Similarity=0.076  Sum_probs=81.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      .+|+++|+.++|||||++++.+..+...+.+++......+.....   ....+++|||||++.|..++...++.+|++++
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~---~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE---DGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC---CCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            579999999999999999999877765544444444333333321   11278999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |+|.++...-..... +...    ...+.|+++++||+|..
T Consensus       165 VVda~dgv~~qT~e~-i~~~----~~~~vPiIVviNKiDl~  200 (587)
T TIGR00487       165 VVAADDGVMPQTIEA-ISHA----KAANVPIIVAINKIDKP  200 (587)
T ss_pred             EEECCCCCCHhHHHH-HHHH----HHcCCCEEEEEECcccc
Confidence            999887432222222 2222    12368999999999953

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00436 era GTP-binding protein Era

Probab=99.78  E-value=8.5e-18  Score=114.33  Aligned_cols=108  Identities=21%  Similarity=0.147  Sum_probs=71.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC-CccC-CcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE-EYHP-TQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF   73 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~   73 (135)
                      +|+++|.+|||||||+|+|++..... ...+ |.........   ..  ....+.+|||||......        ....+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~---~~--~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIH---TT--GASQIIFIDTPGFHEKKHSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEE---Ec--CCcEEEEEECcCCCCCcchHHHHHHHHHHHH
Confidence            68999999999999999999976431 1111 1111111111   11  234689999999754321        12345


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|+|.++..+.+  ..++..+..    .+.|+++|+||+|.
T Consensus        77 l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl  119 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDN  119 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeC
Confidence            78999999999999877664  334444422    26899999999995

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=6.5e-18  Score=105.99  Aligned_cols=113  Identities=23%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC--------cc----CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE--------YH----PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--------~~----~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      ..||++.|+-++||||+++.++.......        +.    .|+.+++-....     .....+.++++|||++|+-+
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~-----~~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL-----DEDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE-----cCcceEEEecCCCcHHHHHH
Confidence            57999999999999999999998764211        11    223333333332     24468999999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |..+++++.++++++|.+.+..+ +....++-+.. ..  .+|++|++||+|..
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~~--~ip~vVa~NK~DL~  134 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-RN--PIPVVVAINKQDLF  134 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-cc--CCCEEEEeeccccC
Confidence            99999999999999999999998 55555554432 22  39999999999943

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.77  E-value=1.3e-17  Score=110.42  Aligned_cols=112  Identities=22%  Similarity=0.296  Sum_probs=76.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-----cchHHhhc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-----SVWPAFQR   75 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----~~~~~~~~   75 (135)
                      ||+++|+++|||||+.+.+.++..+.+   .++|..+....+..     ...+.+++||+||+..+.     ......|+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-----~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~   75 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-----LSFLPLNIWDCPGQDDFMENYFNSQREEIFS   75 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-----TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHC
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-----CCCcEEEEEEcCCccccccccccccHHHHHh
Confidence            799999999999999999998766533   35666665444433     256799999999987553     34677899


Q ss_pred             cCcEEEEEEeCCCcchH---HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         76 DVHGIIFVFNSGVPGHI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        76 ~~~~~i~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++.++|||+|+.+.+-.   ..+...+..+.+..+  ++.+.++.+|+|.
T Consensus        76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp--~~~v~vfiHK~D~  123 (232)
T PF04670_consen   76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP--NIKVFVFIHKMDL  123 (232)
T ss_dssp             TESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST--T-EEEEEEE-CCC
T ss_pred             ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeeccc
Confidence            99999999999855533   333455555655554  8999999999995

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01894 EngA1 EngA1 subfamily

Probab=99.77  E-value=9.1e-18  Score=105.05  Aligned_cols=108  Identities=19%  Similarity=0.140  Sum_probs=69.9

Q ss_pred             EEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHhhc
Q psy10117          6 LILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAFQR   75 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~   75 (135)
                      +++|.+|+|||||++++++....  ... +............    .....+.+||+||...+..        ....+++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAE----WGGREFILIDTGGIEPDDEGISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEE----ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence            47999999999999999986421  111 2212111111221    1346799999999877543        3345678


Q ss_pred             cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         76 DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        76 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++|++++|+|..+..+....  ++.+..+.   .+.|+++|+||+|..
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~  118 (157)
T cd01894          76 EADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNI  118 (157)
T ss_pred             hCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccC
Confidence            89999999999876544332  22222221   258999999999953

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.77  E-value=1.3e-17  Score=111.27  Aligned_cols=113  Identities=21%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC----C---------Cc---cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA----E---------EY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~----~---------~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|..|+|||||+++|+...-.    .         ++   ....+.++......  ......++++||+||+..|.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~--~~~~~~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVAS--FQWEDTKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEE--EEECCEEEEEEeCCCccchH
Confidence            5899999999999999999863211    0         00   11122222111111  12256789999999999998


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+..+++.+|++++|+|.++.... ....++..+.+    .+.|+++++||+|..
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~  129 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence            8889999999999999999886543 33445554433    268999999999954

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.76  E-value=1e-17  Score=126.63  Aligned_cols=112  Identities=14%  Similarity=0.079  Sum_probs=80.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      ..|+++|+.++|||||+++|....+.......+......+.+..    ....++||||||++.|..++...++.+|++++
T Consensus       291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~----~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        291 PVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET----NGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE----CCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            47999999999999999999887665443333333332333322    23679999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |||+++...-.....| ..+    ...++|++|++||+|..
T Consensus       367 VVdAddGv~~qT~e~i-~~a----~~~~vPiIVviNKiDl~  402 (787)
T PRK05306        367 VVAADDGVMPQTIEAI-NHA----KAAGVPIIVAINKIDKP  402 (787)
T ss_pred             EEECCCCCCHhHHHHH-HHH----HhcCCcEEEEEECcccc
Confidence            9999874321111222 111    12368999999999963

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=4e-18  Score=115.54  Aligned_cols=113  Identities=17%  Similarity=0.188  Sum_probs=75.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC-CCC----------------ccC---CcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT-AEE----------------YHP---TQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~-~~~----------------~~~---t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      +|+++|+.|+|||||+++|+...- ...                +.+   ..+.++.....  ..+....++++|||||+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~--~~~~~~~~i~liDTPG~   81 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVM--QFEYRDCVINLLDTPGH   81 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEE--EEeeCCEEEEEEECCCc
Confidence            799999999999999999984211 000                000   01111111111  12236789999999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..|.......++.+|++++|+|.++... .....++....    ..++|+++++||+|..
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~----~~~~P~iivvNK~D~~  136 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCR----LRGIPIITFINKLDRE  136 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHH----hcCCCEEEEEECCccC
Confidence            9888777888999999999999987533 22233333332    1368999999999953

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=2.4e-17  Score=117.57  Aligned_cols=114  Identities=13%  Similarity=0.083  Sum_probs=79.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC-Cc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHhh---
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE-EY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAFQ---   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~---   74 (135)
                      .|+++|.++||||||++++++..+.- .+ ..|...++..+...     ....+.+||+||..    ....+...|+   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-----~~~~~~laD~PGliega~~~~gLg~~fLrhi  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-----DGRSFVMADIPGLIEGASEGVGLGHQFLRHI  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-----CCceEEEEECCCCcccccccchHHHHHHHHH
Confidence            68999999999999999999865321 11 12223222222221     24579999999963    2223344444   


Q ss_pred             ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      ++++++++|+|+++.   ++++....|.+++..+.. +.+.|.+||+||+|.
T Consensus       235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL  286 (424)
T PRK12297        235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL  286 (424)
T ss_pred             hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence            469999999999865   677888888888876543 347899999999995

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.76  E-value=1.3e-17  Score=108.17  Aligned_cols=111  Identities=18%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----------cccccchH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----------HKFESVWP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~   71 (135)
                      .++|+++|++|+|||||++++++..+...+.++.+.+..   .....  ....+.+||+||.          +.+.....
T Consensus        24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL---INFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE---EEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            368999999999999999999997655555555554321   11111  1368999999994          33344455


Q ss_pred             HhhccC---cEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDV---HGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+++.+   +++++++|.+++.+...  .++......   .+.|+++++||+|.
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl  147 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADK  147 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccc
Confidence            566644   67888899877644322  222222221   26899999999995

>KOG0077|consensus

Probab=99.76  E-value=2.5e-18  Score=106.11  Aligned_cols=110  Identities=24%  Similarity=0.305  Sum_probs=93.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      |++++|-.++|||||++.+.+.+..   ++..||..    ...+      ..++++-+|.+|+...+..|..|+..++++
T Consensus        22 KllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE----~l~I------g~m~ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   22 KLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELSI------GGMTFTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             eEEEEeecCCchhhHHHHHccccccccCCCcCCChH----Hhee------cCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence            8999999999999999999886543   33444433    3333      677899999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++.+|+.|.+.|.+.+.-++.+.........|+++.+||+|..
T Consensus        92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p  134 (193)
T KOG0077|consen   92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP  134 (193)
T ss_pred             EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC
Confidence            9999999999999998888888777666789999999999943

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.76  E-value=9.3e-18  Score=123.87  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=77.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeec-----CC-----ceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYAL-----DT-----SKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~-----~~-----~~~~~~i~d~~g~~~~~~~   69 (135)
                      -|+++|++++|||||+++|.+..+....    ..++|..+.........     ..     ....+.+|||||++.|..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            4889999999999999999987664322    22334333222111000     00     1123889999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+++.+|++++|+|+++   +++++.+..+    . .   .+.|+++++||+|.
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~-~---~~vpiIVv~NK~Dl  133 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEALNIL----R-M---YKTPFVVAANKIDR  133 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----H-H---cCCCEEEEEECCCc
Confidence            9999999999999999987   4455444322    1 1   26899999999995

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.75  E-value=2.2e-17  Score=109.09  Aligned_cols=114  Identities=20%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC--CC------------ccCCcceeEE--EEEeeee------cCCceEEEEEEecC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA--EE------------YHPTQGVRIV--ECEHSYA------LDTSKTEIELWDTS   61 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~--~~------------~~~t~~~~~~--~~~~~~~------~~~~~~~~~i~d~~   61 (135)
                      +|+++|..++|||||+.+|+...-.  ..            .+...|.+..  .......      .++..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999854211  00            0011122111  1111111      12347899999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |++.|......+++.+|++++|+|+.+..+... ...+..+..    .++|+++|+||+|.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~  137 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDR  137 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCc
Confidence            999999999999999999999999988765543 223333322    25799999999995

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=2.7e-17  Score=118.29  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc--------ccccchHHhh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH--------KFESVWPAFQ   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~   74 (135)
                      +|+++|.+|||||||+++|.+.... ....+....+........    ....+.+|||||..        .+......++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~   76 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW----GGREFILIDTGGIEEDDDGLDKQIREQAEIAI   76 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE----CCeEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            5899999999999999999987532 111122222221222211    34579999999963        3444556678


Q ss_pred             ccCcEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHIS--ELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+|++++|+|..+..+..  .+..|+.+       .+.|+++|+||+|.
T Consensus        77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~  119 (429)
T TIGR03594        77 EEADVILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDG  119 (429)
T ss_pred             hhCCEEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccC
Confidence            8999999999998754432  23344433       26899999999995

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.74  E-value=2.3e-17  Score=122.08  Aligned_cols=108  Identities=17%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC---CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT---TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHG   79 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   79 (135)
                      +.|+++|+.++|||||+++|.+..   ++.+..++++.+........    ....+.+||+||++.|.......+.++|+
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~----~~~~v~~iDtPGhe~f~~~~~~g~~~aD~   76 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL----PDYRLGFIDVPGHEKFISNAIAGGGGIDA   76 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe----CCEEEEEEECCCHHHHHHHHHhhhccCCE
Confidence            468999999999999999999632   33333444444333222222    23789999999999998888888899999


Q ss_pred             EEEEEeCCCc---chHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         80 IIFVFNSGVP---GHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        80 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      +++|+|+++.   ++++.+.    .+. .   .++| +++|+||+|.
T Consensus        77 aILVVDa~~G~~~qT~ehl~----il~-~---lgi~~iIVVlNK~Dl  115 (581)
T TIGR00475        77 ALLVVDADEGVMTQTGEHLA----VLD-L---LGIPHTIVVITKADR  115 (581)
T ss_pred             EEEEEECCCCCcHHHHHHHH----HHH-H---cCCCeEEEEEECCCC
Confidence            9999999883   3443332    221 1   1466 9999999995

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=4.7e-17  Score=106.01  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHh-----hcc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAF-----QRD   76 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-----~~~   76 (135)
                      ++||+++|++|+|||||+|.+.+.........+.+....+.............+.+||+||..........|     +.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999986554322222221100111111111123478999999975433333333     567


Q ss_pred             CcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         77 VHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        77 ~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|.++++.+    ..|... ..|++.+...    +.|+++|+||+|.
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~  119 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQCM----GKKFYFVRTKVDR  119 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHHh----CCCEEEEEecccc
Confidence            888888743    235445 3455555432    4799999999995

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.74  E-value=1.8e-17  Score=103.49  Aligned_cols=108  Identities=20%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhh--
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQ--   74 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~--   74 (135)
                      ++|+++|.|+||||||+|+|++........|....+.....+..    ....+.+.|+||.-...      .....++  
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~----~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~   76 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL----GDQQVELVDLPGIYSLSSKSEEERVARDYLLS   76 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE----TTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe----cCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence            58999999999999999999998754333344444433333322    34789999999943221      2223343  


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .+.|+++.|.|.++.   +.-.+...++...    +.|++++.||+|
T Consensus        77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D  116 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMD  116 (156)
T ss_dssp             TSSSEEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHH
T ss_pred             cCCCEEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHH
Confidence            589999999999774   3333444444332    689999999999

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04163 Era Era subfamily

Probab=99.74  E-value=8.6e-17  Score=101.19  Aligned_cols=113  Identities=21%  Similarity=0.168  Sum_probs=71.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~   73 (135)
                      ..+|+++|++|+|||||++++.+.............. .....  ........+.+||+||......        .....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            4689999999999999999999875432111111110 01111  1112356889999999654332        23345


Q ss_pred             hccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +..++++++|+|.+++.  .... .++..+...    +.|+++|+||+|..
T Consensus        80 ~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~~----~~~~iiv~nK~Dl~  124 (168)
T cd04163          80 LKDVDLVLFVVDASEPI--GEGDEFILELLKKS----KTPVILVLNKIDLV  124 (168)
T ss_pred             HHhCCEEEEEEECCCcc--CchHHHHHHHHHHh----CCCEEEEEEchhcc
Confidence            77899999999999872  2222 233333222    57999999999953

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=6.9e-17  Score=116.77  Aligned_cols=114  Identities=15%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-C-ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccch---HHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-E-YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVW---PAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~---~~~   73 (135)
                      .+|+|+|.++||||||+++|++..+.. . ...|.......+..      ....+.+||+||.-.    .+.+.   -.+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~------~~~~f~laDtPGliegas~g~gLg~~fLrh  233 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA------GDTRFTVADVPGLIPGASEGKGLGLDFLRH  233 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE------CCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence            478999999999999999999865431 1 12333333222222      345899999999531    11222   223


Q ss_pred             hccCcEEEEEEeCCCc----chHHHHHHHHHHHHhcc----------CCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVP----GHISELLLFYDYFVTQS----------DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~----~s~~~~~~~~~~i~~~~----------~~~~~p~ivv~nK~D~  122 (135)
                      +++++++++|+|+++.    +.++.+..|..++..+.          .+...|++||+||+|.
T Consensus       234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL  296 (500)
T PRK12296        234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV  296 (500)
T ss_pred             HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence            5679999999999853    35666666666665543          2347899999999995

>cd01895 EngA2 EngA2 subfamily

Probab=99.74  E-value=1.2e-16  Score=101.34  Aligned_cols=112  Identities=15%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-----------c
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-----------V   69 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~   69 (135)
                      .++|+++|++|+|||||++++.+.... ....+............  .  ....+.+||+||......           .
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~   77 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE--Y--DGKKYTLIDTAGIRRKGKVEEGIEKYSVLR   77 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE--E--CCeeEEEEECCCCccccchhccHHHHHHHH
Confidence            368999999999999999999986532 11112221111111111  1  234578999999653311           1


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...++..+|++++|+|.+++.+.... .++..+..    .+.|+++++||+|.
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl  125 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDL  125 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEecccc
Confidence            12346789999999999988775443 23333322    25799999999995

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.73  E-value=4.4e-17  Score=120.54  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=76.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeecCCce-----E-----EEEEEecCCCccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYALDTSK-----T-----EIELWDTSGDHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~-----~-----~~~i~d~~g~~~~~~   68 (135)
                      ..|+++|+.++|||||+++|.+.......    ..++|..+..........+..     .     .+.+|||||++.|..
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~   86 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN   86 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence            36899999999999999999875433222    123343322221110000111     1     278999999999999


Q ss_pred             chHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++...++.+|++++|+|+++   +++++.+..+    ..    .+.|+++++||+|.
T Consensus        87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~----~~vpiIvviNK~D~  135 (586)
T PRK04004         87 LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR----RKTPFVVAANKIDR  135 (586)
T ss_pred             HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH----cCCCEEEEEECcCC
Confidence            88888999999999999987   5555554322    11    26899999999995

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.73  E-value=5.9e-17  Score=120.23  Aligned_cols=115  Identities=21%  Similarity=0.225  Sum_probs=83.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC--CC-----CC------ccCCcceeEEEEEee--ee-cCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLT--TA-----EE------YHPTQGVRIVECEHS--YA-LDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~--~~-----~~------~~~t~~~~~~~~~~~--~~-~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +++++|+.++|||||+.+|+...  ..     ..      .+.+.|.++......  +. .++..+.+++|||||+..|.
T Consensus         9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~   88 (600)
T PRK05433          9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS   88 (600)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence            79999999999999999998632  11     00      122334433322221  11 24567899999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+..+++.+|++++|+|+++.........|.....     .+.|+++|+||+|..
T Consensus        89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~  139 (600)
T PRK05433         89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLP  139 (600)
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence            999999999999999999998766665555644321     267999999999953

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.73  E-value=1.5e-17  Score=104.87  Aligned_cols=98  Identities=24%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch----HHhhccCcE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW----PAFQRDVHG   79 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~   79 (135)
                      +|+++|++++|||||++++.+....  ..++.+..     +  ..  .    .+||+||.......+    ...++.+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v~-----~--~~--~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~   67 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAVE-----F--ND--K----GDIDTPGEYFSHPRWYHALITTLQDVDM   67 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceEEE-----E--CC--C----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence            7999999999999999998864321  11222221     1  11  1    279999973222111    234689999


Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +++|+|.++.+++  +..|+..+.     .+.|+++++||+|..
T Consensus        68 il~v~d~~~~~s~--~~~~~~~~~-----~~~~ii~v~nK~Dl~  104 (158)
T PRK15467         68 LIYVHGANDPESR--LPAGLLDIG-----VSKRQIAVISKTDMP  104 (158)
T ss_pred             EEEEEeCCCcccc--cCHHHHhcc-----CCCCeEEEEEccccC
Confidence            9999999988776  334655541     257899999999953

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.73  E-value=2.2e-16  Score=113.61  Aligned_cols=112  Identities=17%  Similarity=0.114  Sum_probs=74.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch-----------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW-----------   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------   70 (135)
                      ++++++|.+++|||||++++++.... ....+....+  ........  ....+.+|||||..++....           
T Consensus       173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~--~~~~~~~~--~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD--SIDIPFER--NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC--cEeEEEEE--CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            68999999999999999999986532 1111222211  21122111  23378999999976544321           


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+++.+|++++|+|++++.+..... ++..+..    .+.|+++|+||+|..
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccC
Confidence            23578999999999999887765543 3333322    268999999999963

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK10218 GTP-binding protein; Provisional

Probab=99.72  E-value=2.9e-16  Score=116.39  Aligned_cols=114  Identities=17%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhc--CCCCCC------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCD--LTTAEE------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~--~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   68 (135)
                      -||+++|+.++|||||+.+|+.  +.+...            .+.+.|.++.......  +....++++||+||+..|..
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i--~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI--KWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE--ecCCEEEEEEECCCcchhHH
Confidence            3899999999999999999996  322211            2334555544433332  23568999999999999999


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .+..+++.+|++++|+|+.+.... ....++..+..    .++|.+++.||+|..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~  133 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRP  133 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCC
Confidence            999999999999999999875432 23333443322    267889999999953

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=2.4e-16  Score=119.33  Aligned_cols=111  Identities=19%  Similarity=0.115  Sum_probs=73.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHhh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAFQ   74 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~   74 (135)
                      .+|+++|.++||||||+++|++.... ....+.|.+.........  .....+.+|||+|.+.        +......++
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~--~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAE--WAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEE--ECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            58999999999999999999986532 122233332222221111  1345789999999763        233345568


Q ss_pred             ccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+|++++|+|.++.-  .... .|...+..    .+.|+++|+||+|.
T Consensus       353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~----~~~pvIlV~NK~D~  395 (712)
T PRK09518        353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR----AGKPVVLAVNKIDD  395 (712)
T ss_pred             HhCCEEEEEEECCCCC--CHHHHHHHHHHHh----cCCCEEEEEECccc
Confidence            8999999999997642  2332 34444432    36899999999995

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=1.7e-16  Score=108.15  Aligned_cols=114  Identities=14%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC----------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc---
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE----------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE---   67 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---   67 (135)
                      +.++|+++|++|+|||||++++++......          ..+|.+........  ..++..+++++|||||-..+.   
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i--~~~g~~~~l~iiDTpGfgd~~~~~   80 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEI--EENGVKLKLTVIDTPGFGDNINNS   80 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEE--EECCEEEEEEEEecCCccccccch
Confidence            478999999999999999999998876532          23333333333332  344567899999999932211   


Q ss_pred             -----------------------cchHHhhc--cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         68 -----------------------SVWPAFQR--DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        68 -----------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                                             ..+...+.  ++|+++|+++.+.. .+... ...++.+.   .  .+|+++|+||+|
T Consensus        81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~--~v~vi~VinK~D  154 (276)
T cd01850          81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---K--RVNIIPVIAKAD  154 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---c--cCCEEEEEECCC
Confidence                                   11112233  46777888776542 22222 33344442   1  589999999999


Q ss_pred             C
Q psy10117        122 G  122 (135)
Q Consensus       122 ~  122 (135)
                      .
T Consensus       155 ~  155 (276)
T cd01850         155 T  155 (276)
T ss_pred             c
Confidence            5

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.71  E-value=1.5e-16  Score=104.46  Aligned_cols=113  Identities=14%  Similarity=0.062  Sum_probs=69.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC-----------------------------ccCCcceeEEEEEeeeecCCceEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE-----------------------------YHPTQGVRIVECEHSYALDTSKTE   54 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~~   54 (135)
                      ||+++|.+++|||||+++|+...-.-.                             .+...|.+......  ........
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYR--YFSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeeccee--EEecCCce
Confidence            689999999999999999975321100                             00001111111111  11124558


Q ss_pred             EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+|||||++.|.......++.+|++++|+|.+++..- ........+ ...+  ..++++|.||+|.
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~-~~~~--~~~iIvviNK~D~  142 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYIL-SLLG--IRHVVVAVNKMDL  142 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHH-HHcC--CCcEEEEEEchhc
Confidence            89999999988766666778899999999999875321 112211212 1211  2468889999995

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=8.2e-16  Score=92.15  Aligned_cols=104  Identities=23%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chH
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWP   71 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~   71 (135)
                      ||+++|.+|+|||||+++|++....   .....|....+..+..      ....+.++|+||-.....         ...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~------~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~   74 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY------NNKKFILVDTPGINDGESQDNDGKEIRKFL   74 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE------TTEEEEEEESSSCSSSSHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee------ceeeEEEEeCCCCcccchhhHHHHHHHHHH
Confidence            6999999999999999999985322   2223333332222222      445668999999532111         122


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEec
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV  119 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  119 (135)
                      ..+..+|++++|+|..++.. +.....+..+ +    .+.|+++|.||
T Consensus        75 ~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK  116 (116)
T PF01926_consen   75 EQISKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK  116 (116)
T ss_dssp             HHHCTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred             HHHHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence            23478999999999776321 2233344444 1    37899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=4e-16  Score=110.62  Aligned_cols=114  Identities=12%  Similarity=0.057  Sum_probs=78.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----c---hHHhh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----V---WPAFQ   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~~~   74 (135)
                      .|.|+|.|+||||||+|+|++.+....  ...|.......+..     .....+.++|+||...-..    +   .-..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-----~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i  235 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-----DDERSFVVADIPGLIEGASEGAGLGIRFLKHL  235 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-----CCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence            689999999999999999998654321  12232322222222     1234689999999643211    1   12346


Q ss_pred             ccCcEEEEEEeCC---CcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSG---VPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      ++++++++|+|++   +.+.++.+..|++++..+.. +.+.|+++|+||+|.
T Consensus       236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl  287 (390)
T PRK12298        236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL  287 (390)
T ss_pred             HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence            7899999999998   55678888888888876432 246899999999995

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.70  E-value=2.8e-16  Score=116.39  Aligned_cols=112  Identities=19%  Similarity=0.245  Sum_probs=82.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC--CCCCC------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCDL--TTAEE------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~--~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      +|+++|+.++|||||+.+|+..  .+...            .+...|.++........  ....++++|||||+..|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~--~~~~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR--YNGTKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE--ECCEEEEEEECCCHHHHHHH
Confidence            7999999999999999999863  22111            12233444433322222  25689999999999999988


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+++.+|++++|+|+.+. .......|+..+...    ++|+++|+||+|.
T Consensus        81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~  128 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDR  128 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCC
Confidence            99999999999999999864 345556676666442    5789999999995

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.70  E-value=1.7e-16  Score=103.87  Aligned_cols=113  Identities=16%  Similarity=0.155  Sum_probs=71.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCC---CCC--ccCCcceeEEEEEee-------------------e--e----c--CC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTT---AEE--YHPTQGVRIVECEHS-------------------Y--A----L--DT   50 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~---~~~--~~~t~~~~~~~~~~~-------------------~--~----~--~~   50 (135)
                      ++|.++|+.|+|||||+..+.+...   +.+  ...++...+..+...                   .  .    .  ..
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999976521   111  111111111111111                   0  0    0  00


Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....+.+||+||++.+.......+..+|++++|+|++++    .+++.+..|    .. .+  ..|+++|+||+|.
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~--~~~iiivvNK~Dl  149 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MG--LKHIIIVQNKIDL  149 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cC--CCcEEEEEEchhc
Confidence            126889999999998877777777889999999999874    233333222    11 11  2479999999995

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.70  E-value=3.2e-16  Score=98.80  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=70.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----------cccchHHh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----------FESVWPAF   73 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~   73 (135)
                      +|+++|++|+|||||++.+.++.......++.+.+........     ...+.+||+||...          +......|
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~   75 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-----NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEY   75 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-----cCeEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence            4899999999999999999965555545555554332222211     11889999999432          33334445


Q ss_pred             hc---cCcEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QR---DVHGIIFVFNSGVPGH--ISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~---~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.   +.+++++++|..+..+  ...+..|+...       ..|+++++||+|.
T Consensus        76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~  122 (170)
T cd01876          76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADK  122 (170)
T ss_pred             HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhc
Confidence            54   4578899999876532  23344555443       4799999999995

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK00089 era GTPase Era; Reviewed

Probab=99.70  E-value=6.3e-16  Score=106.25  Aligned_cols=109  Identities=24%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC-ccC-CcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE-YHP-TQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF   73 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~   73 (135)
                      .|+++|++|||||||+|++++...... ..+ |.........   ..  ....+.+|||||......        .....
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~---~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV---TE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE---Ec--CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            589999999999999999998764321 111 1111111111   11  336899999999654332        22335


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.++|++++|+|+++.  +.....++......   .+.|+++|+||+|.
T Consensus        82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl  125 (292)
T PRK00089         82 LKDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDL  125 (292)
T ss_pred             HhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcC
Confidence            6789999999999883  22233333332221   25899999999996

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.69  E-value=4.1e-16  Score=112.15  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC--------------------------C---ccCCcceeEEEEEeeeecCCce
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE--------------------------E---YHPTQGVRIVECEHSYALDTSK   52 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~--------------------------~---~~~t~~~~~~~~~~~~~~~~~~   52 (135)
                      .++|+++|+.++|||||+++|+...-.-                          +   .+...|.+......  ..+...
T Consensus         6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~~~   83 (425)
T PRK12317          6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFETDK   83 (425)
T ss_pred             EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEecCC
Confidence            4789999999999999999998432110                          0   00011221111111  112256


Q ss_pred             EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHH-HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE-LLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+++||+||++.|.......++.+|++++|+|+++..++.. ...++..+ ...+  ..|+++++||+|.
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~--~~~iivviNK~Dl  151 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG--INQLIVAINKMDA  151 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC--CCeEEEEEEcccc
Confidence            789999999998886655556789999999999987322222 22222222 2222  3479999999995

>cd00880 Era_like Era (E

Probab=99.69  E-value=4.5e-16  Score=96.95  Aligned_cols=108  Identities=21%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             EECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hHHhhccCc
Q psy10117          7 ILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WPAFQRDVH   78 (135)
Q Consensus         7 viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~~~   78 (135)
                      ++|+.|+|||||++++.+.... ....+.............   .....+.+||+||...+...       ...+++.+|
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d   77 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL---GPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD   77 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe---cCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence            5899999999999999986543 111111111111111111   12568999999997765433       334788999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|+|..+..+..... |+.....    .+.|+++|+||+|.
T Consensus        78 ~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~  116 (163)
T cd00880          78 LILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDL  116 (163)
T ss_pred             EEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEcccc
Confidence            999999999887765554 3333322    37899999999994

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.69  E-value=1.2e-15  Score=98.62  Aligned_cols=112  Identities=20%  Similarity=0.129  Sum_probs=78.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC--------------------ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE--------------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .+|+++|+.++|||||+.+|+.......                    ..-|.......+.    .......+++.|+||
T Consensus         4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~----~~~~~~~i~~iDtPG   79 (188)
T PF00009_consen    4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE----KNENNRKITLIDTPG   79 (188)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE----BTESSEEEEEEEESS
T ss_pred             EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc----ccccccceeeccccc
Confidence            5899999999999999999996542211                    1222222222222    123678999999999


Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +..|.......++.+|++++|+|+.+.-.. .....+..+..    .+.|+++|.||+|.-
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLI  135 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSS
T ss_pred             ccceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccch
Confidence            999988888889999999999999876432 23333333322    267899999999963

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.69  E-value=2e-16  Score=113.73  Aligned_cols=114  Identities=14%  Similarity=0.128  Sum_probs=74.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--CCCC-----------------------------CccCCcceeEEEEEeeeecCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--TTAE-----------------------------EYHPTQGVRIVECEHSYALDT   50 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~   50 (135)
                      .++|+++|+.++|||||+.+|+..  ....                             +...+++.+.....+    ..
T Consensus         7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~----~~   82 (426)
T TIGR00483         7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF----ET   82 (426)
T ss_pred             eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE----cc
Confidence            478999999999999999999852  1110                             001122222222222    22


Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHH--HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL--LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....+++||+||++.|.......+..+|++++|+|+++.+++...  ..++. +.+..+  ..|+++++||+|.
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~--~~~iIVviNK~Dl  153 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG--INQLIVAINKMDS  153 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC--CCeEEEEEEChhc
Confidence            467899999999998876666667899999999999987643211  12222 222222  4589999999996

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=2.4e-16  Score=115.38  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc--CCCC--C-------------C---ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCD--LTTA--E-------------E---YHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~--~~~~--~-------------~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      -+|+++|+.++|||||+.+|+.  +...  .             +   .....|.++.......  +.....+++|||||
T Consensus        11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~--~~~~~~inliDTPG   88 (526)
T PRK00741         11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF--PYRDCLINLLDTPG   88 (526)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE--EECCEEEEEEECCC
Confidence            3899999999999999999973  1100  0             0   0111222222221111  12567899999999


Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG  124 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~  124 (135)
                      ++.|......+++.+|++++|+|.++.-. .....++....    ..++|+++++||+|...
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~----~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCR----LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHH----hcCCCEEEEEECCcccc
Confidence            99998878888999999999999987532 22333333332    23789999999999543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.68  E-value=6.5e-16  Score=116.99  Aligned_cols=111  Identities=18%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----------cccch-
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----------FESVW-   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~-   70 (135)
                      +||+++|.++||||||++++++.... ....+..+.+........    ....+.+|||+|..+          +..+. 
T Consensus       451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~----~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI----DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE----CCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            68999999999999999999987642 121222222222222222    223567999999532          11111 


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+++.+|++++|+|.++..++..+.. +..+..    .+.|+++|+||+|.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~----~~~piIiV~NK~DL  573 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD----AGRALVLVFNKWDL  573 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEEchhc
Confidence            234678999999999999887766643 333322    26899999999995

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=9.8e-16  Score=104.17  Aligned_cols=113  Identities=22%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC----Cc--cCC----------cceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE----EY--HPT----------QGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~----~~--~~t----------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|++|+|||||+++++...-..    ..  ..+          .+........  ........+++||+||...|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~--~~~~~~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVA--PLEWKGHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeE--EEEECCEEEEEEECcCHHHHH
Confidence            58999999999999999997532110    00  000          0111100000  111245789999999998887


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .....+++.+|++++|+|.++.........| ..+..    .++|.+++.||+|..
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~  129 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRE  129 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccC
Confidence            7788899999999999999886654333333 22221    268999999999954

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.68  E-value=2.6e-15  Score=100.16  Aligned_cols=81  Identities=21%  Similarity=0.220  Sum_probs=55.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC-Ccc-CCcceeEEEEEeeeecCCceEEEEEEecCCCcccc----c---chHHhh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE-EYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE----S---VWPAFQ   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~---~~~~~~   74 (135)
                      +++++|++|+|||||++++.+..... .+. .|.......+..      ....+++||+||.....    .   ....++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~------~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~   75 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY------KGAKIQLLDLPGIIEGAADGKGRGRQVIAVA   75 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE------CCeEEEEEECCCcccccccchhHHHHHHHhh
Confidence            79999999999999999999865321 111 222222112222      45689999999974332    1   233468


Q ss_pred             ccCcEEEEEEeCCCcc
Q psy10117         75 RDVHGIIFVFNSGVPG   90 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~   90 (135)
                      +++|++++|+|++++.
T Consensus        76 ~~ad~il~V~D~t~~~   91 (233)
T cd01896          76 RTADLILMVLDATKPE   91 (233)
T ss_pred             ccCCEEEEEecCCcch
Confidence            8999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.67  E-value=2e-15  Score=114.66  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=75.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc----------hH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV----------WP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~   71 (135)
                      +++|+++|.++||||||+|++++....  .....|.+........  ......+++||+||...+...          ..
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~--~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEE--EcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            579999999999999999999987543  2233344332222222  225568999999998765421          12


Q ss_pred             Hhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .++  .++|++++|+|.++.+.   ..+|..++.+.    +.|++++.||+|.
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~----giPvIvVlNK~Dl  124 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLER---NLYLTLQLLEL----GIPCIVALNMLDI  124 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc----CCCEEEEEEchhh
Confidence            233  47999999999987543   33455555332    6899999999994

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=1.2e-15  Score=115.27  Aligned_cols=111  Identities=23%  Similarity=0.194  Sum_probs=80.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-------------C-------CccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-------------E-------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .||+++|+.++|||||+++|+...-.             .       ....|+......+..      ....+++|||||
T Consensus         9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~------~~~~i~liDtPG   82 (687)
T PRK13351          9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW------DNHRINLIDTPG   82 (687)
T ss_pred             cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE------CCEEEEEEECCC
Confidence            48999999999999999999853210             0       122233322222222      567999999999


Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG  124 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~  124 (135)
                      +..|...+..+++.+|++++|+|.++.........| ..+..    .++|+++++||+|...
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence            999988899999999999999999987766555444 33322    2689999999999543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.67  E-value=5.9e-16  Score=109.27  Aligned_cols=110  Identities=18%  Similarity=0.076  Sum_probs=76.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc---------cch
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE---------SVW   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~   70 (135)
                      ..|+++|.|+||||||+|+|++....   ..+..|.+..+.....      ....+.+.||+|-+...         ...
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~------~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa   77 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW------LGREFILIDTGGLDDGDEDELQELIREQA   77 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE------cCceEEEEECCCCCcCCchHHHHHHHHHH
Confidence            56999999999999999999997654   3344444444444443      45579999999965322         233


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ...+..||+++||+|....-+  ...+.+.++.+.   .+.|+++|.||+|..
T Consensus        78 ~~Ai~eADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~  125 (444)
T COG1160          78 LIAIEEADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNL  125 (444)
T ss_pred             HHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCc
Confidence            445679999999999866433  233444444331   268999999999964

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=6.5e-16  Score=113.18  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=77.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhc-CCCCC----------------C---ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCD-LTTAE----------------E---YHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~-~~~~~----------------~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .+|+++|..++|||||+++|+. .....                +   .+...|.++......  .+.....+++|||||
T Consensus        12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~--~~~~~~~inliDTPG   89 (527)
T TIGR00503        12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQ--FPYRDCLVNLLDTPG   89 (527)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEE--EeeCCeEEEEEECCC
Confidence            4899999999999999999863 11110                0   111223332222121  223568999999999


Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG  124 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~  124 (135)
                      +..|.......++.+|++++|+|.++.- ......++.... .   .++|+++++||+|...
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~-~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTR-L---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHH-h---cCCCEEEEEECccccC
Confidence            9988877788899999999999987642 122344444332 2   3689999999999543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.66  E-value=4.6e-15  Score=107.00  Aligned_cols=111  Identities=18%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-----------h
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-----------W   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~   70 (135)
                      ++|+++|.+++|||||++++++.... ....+  |.+..........  ....+.+|||||.......           .
T Consensus       174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~--gtt~~~~~~~~~~--~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIA--GTTRDSIDTPFER--DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCceeecCCC--CceEEEEEEEEEE--CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            79999999999999999999976421 22222  2222222222211  3456889999996432221           1


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+++.+|++++|+|++++.+..... ++..+..    .+.|+++|+||+|.
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl  296 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDL  296 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccC
Confidence            23577999999999999887655443 3333322    25799999999995

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=3.6e-15  Score=101.30  Aligned_cols=113  Identities=19%  Similarity=0.133  Sum_probs=74.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC--C--C---------C---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT--A--E---------E---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~--~--~---------~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|.+++|||||+++|+...-  .  .         +   .+...|.+.......  ......+++++||||+..|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~--~~~~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATT--CFWKDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEE--EEECCEEEEEEECCCcHHHH
Confidence            589999999999999999974211  0  0         0   001112222111111  11246789999999999888


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+...++.+|++++|+|..+...- .....+..+..    .+.|++++.||+|..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~  129 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRT  129 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCC
Confidence            8889999999999999999775322 12233333322    257999999999954

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.65  E-value=2.8e-15  Score=111.28  Aligned_cols=103  Identities=17%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             CCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc------hHHhh--ccCcEE
Q psy10117          9 GPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV------WPAFQ--RDVHGI   80 (135)
Q Consensus         9 G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~   80 (135)
                      |.+|||||||+|++.+........++.+.+........    ....+++||+||+..+...      ...++  +++|++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~----~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv   76 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF----QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV   76 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE----CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence            89999999999999987664444454444433333322    2346899999998876543      33343  378999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|+|.++.+   +..++..++.+    .+.|+++|+||+|.
T Consensus        77 I~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl  111 (591)
T TIGR00437        77 VNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDE  111 (591)
T ss_pred             EEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHH
Confidence            9999998743   22344444432    26899999999994

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.64  E-value=3.2e-15  Score=98.89  Aligned_cols=115  Identities=14%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-----------------------------CCccCCcceeEEEEEeeeecCCceEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-----------------------------EEYHPTQGVRIVECEHSYALDTSKTE   54 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~~~   54 (135)
                      +|+++|+.++|||||+.+|+...-.                             ...+...|.+.......  ......+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--~~~~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--FETEKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE--EeeCCeE
Confidence            5899999999999999998632100                             00000112111111111  1125678


Q ss_pred             EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH---I---SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +++||+||+..|.......++.+|++++|+|+++...   |   ......+... ...  ...|++++.||+|..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~  150 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDV  150 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccc
Confidence            9999999988777666667788999999999988521   1   1122222222 121  236899999999964

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd00066 G-alpha G protein alpha subunit

Probab=99.63  E-value=1e-14  Score=101.28  Aligned_cols=71  Identities=23%  Similarity=0.327  Sum_probs=61.6

Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----------chHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----------GHISELLLFYDYFVTQSDLNNHKCLLIDNVK  120 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  120 (135)
                      ..+.+.+||++|+...+..|.++|.++++++||+|+++-          ..+.+....+..+.+.....+.|++|++||+
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            457889999999999999999999999999999999873          3466667777777777766789999999999


Q ss_pred             C
Q psy10117        121 P  121 (135)
Q Consensus       121 D  121 (135)
                      |
T Consensus       239 D  239 (317)
T cd00066         239 D  239 (317)
T ss_pred             H
Confidence            9

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=8.3e-15  Score=93.81  Aligned_cols=104  Identities=19%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC----CCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------Cccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA----EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~   68 (135)
                      .-|+++|.++||||||||.|+++...    .++..|...+++.+..         .+.+.|.||          ++.+..
T Consensus        25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---------~~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---------ELRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---------cEEEEeCCCcccccCCHHHHHHHHH
Confidence            36899999999999999999997633    3444555555544333         388999999          345556


Q ss_pred             chHHhhc---cCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQR---DVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~---~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +...|++   +-.+++.+.|...+-.-  .++-+|+.+.       ++|++|+.||+|.
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-------~i~~~vv~tK~DK  147 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-------GIPVIVVLTKADK  147 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-------CCCeEEEEEcccc
Confidence            6666775   35688888898765432  1223454443       7999999999993

>KOG0090|consensus

Probab=99.62  E-value=2.6e-15  Score=96.50  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc---cCcEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR---DVHGI   80 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~   80 (135)
                      .|+++|+.+||||+|+..|..+...+++ +++..+...+..      ..-..++.|.||+.+.+.....++.   .+-++
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSiepn~a~~r~------gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIEPNEATYRL------GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCee-eeeccceeeEee------cCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            5899999999999999999998665443 333333333333      1123899999999999888888887   79999


Q ss_pred             EEEEeCCC-cchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGV-PGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~  122 (135)
                      |||+|... +.-...+.+++-++....  ....+|+++++||.|.
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl  157 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL  157 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence            99999753 333555555555554433  3457899999999993

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.60  E-value=2e-14  Score=108.67  Aligned_cols=113  Identities=19%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC----CCccC------------CcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA----EEYHP------------TQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~----~~~~~------------t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|..++|||||+++|+...-.    .....            ..|.+........  ......+++|||||+..+.
T Consensus        12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~--~~~~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV--FWKGHRINIIDTPGHVDFT   89 (689)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE--EECCeEEEEEECCCCcchh
Confidence            8999999999999999999742110    00000            1122111111111  1146789999999999888


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .....+++.+|++++|+|..+........ ++..+..    .+.|+++++||+|..
T Consensus        90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~  140 (689)
T TIGR00484        90 VEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKT  140 (689)
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCC
Confidence            88888999999999999998765543332 2233322    258999999999953

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.60  E-value=1.1e-14  Score=104.24  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=73.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC---C--ccCCcceeEEEEE--------------eeeecC------CceEEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE---E--YHPTQGVRIVECE--------------HSYALD------TSKTEIE   56 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~---~--~~~t~~~~~~~~~--------------~~~~~~------~~~~~~~   56 (135)
                      +++|+++|..++|||||+++|.+.....   +  ..-|+...+..+.              .....+      .....++
T Consensus         4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   83 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS   83 (406)
T ss_pred             eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence            5799999999999999999997532211   1  0111111111111              000000      1246899


Q ss_pred             EEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        57 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||+||++.|...+......+|++++|+|+++.....+..+.+..+. ..+  ..|+++++||+|.
T Consensus        84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g--i~~iIVvvNK~Dl  146 (406)
T TIGR03680        84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG--IKNIVIVQNKIDL  146 (406)
T ss_pred             EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC--CCeEEEEEEcccc
Confidence            99999999998777777888999999999986431122223333221 111  3478999999995

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG1159 Era GTPase [General function prediction only]

Probab=99.59  E-value=3.1e-14  Score=95.92  Aligned_cols=108  Identities=21%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH--------
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA--------   72 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~--------   72 (135)
                      -|+++|.|+||||||+|++.+.+..-   ..+.|.-    ...--...  ....+-+.||||-...+.....        
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~----~I~GI~t~--~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN----RIRGIVTT--DNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh----heeEEEEc--CCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            47899999999999999999987542   1122211    11111111  4668899999996544332222        


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+.++|.++||.|.+++-  ..-.+|+-+..+.   .+.|++++.||.|.
T Consensus        82 sl~dvDlilfvvd~~~~~--~~~d~~il~~lk~---~~~pvil~iNKID~  126 (298)
T COG1159          82 ALKDVDLILFVVDADEGW--GPGDEFILEQLKK---TKTPVILVVNKIDK  126 (298)
T ss_pred             HhccCcEEEEEEeccccC--CccHHHHHHHHhh---cCCCeEEEEEcccc
Confidence            356899999999998743  2233444333222   26899999999994

>KOG1489|consensus

Probab=99.59  E-value=7.9e-15  Score=99.35  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=85.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----cccccchHHh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----HKFESVWPAF   73 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~   73 (135)
                      .+-++|-|++|||||++.++..++.      ++..|.+|...+.         ....+.+=|.||.    ...+.+-..|
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd---------df~q~tVADiPGiI~GAh~nkGlG~~F  268 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD---------DFSQITVADIPGIIEGAHMNKGLGYKF  268 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc---------ccceeEeccCccccccccccCcccHHH
Confidence            4569999999999999999987654      2344555522111         2334899999983    3344444555


Q ss_pred             h---ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhc-cCCCCceEEEEEecCCCCcccccccccc
Q psy10117         74 Q---RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQ-SDLNNHKCLLIDNVKPGRGDSSGHAHSL  133 (135)
Q Consensus        74 ~---~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~~~~~~~~l~~l  133 (135)
                      +   ++|..++||+|++..   +.++.++.+..++..+ ..+.+.|.++|+||+|....+...+++|
T Consensus       269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L  335 (366)
T KOG1489|consen  269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL  335 (366)
T ss_pred             HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH
Confidence            4   479999999999998   7888888888777764 4456889999999999743333334444

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.58  E-value=7.5e-14  Score=99.00  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH-------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA-------   72 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------   72 (135)
                      +|++++|.|++|||||+|.|++....   +-...|.++-...+..      ..+.+.+.||.|........+.       
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i------~G~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL------NGIPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE------CCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence            68999999999999999999987543   2233444433333333      7789999999996654443333       


Q ss_pred             -hhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 -FQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 -~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                       ..++||.+++|+|.+.+. ..+....+       ....+.|+++|.||.|.
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL  336 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADL  336 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhc
Confidence             467999999999999862 22222222       11237899999999994

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.57  E-value=5.2e-14  Score=91.54  Aligned_cols=114  Identities=13%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-----------C---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-----------E---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-----------~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|..++|||||+++|+.....           .   ..+...|.+.......  .+.....+.+.||||+..|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE--YETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE--ecCCCeEEEEEECcCHHHHH
Confidence            478999999999999999999864110           0   0111223322222221  12245678999999998887


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ......+..+|++++|+|....-. ......+..+...    +.| ++++.||+|.
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~~~iIvviNK~D~  130 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV----GVPYIVVFLNKADM  130 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCcEEEEEeCCCC
Confidence            767777889999999999876432 2223333333222    455 7899999995

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.57  E-value=1.9e-14  Score=109.15  Aligned_cols=114  Identities=24%  Similarity=0.136  Sum_probs=76.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC---------------CCCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT---------------TAEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~---------------~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      .||+++|+.++|||||+.+|+...               +...   ...|+.........  ..++..+.+++|||||+.
T Consensus        20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~--~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH--EYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE--eecCCceEEEEEeCCCcc
Confidence            389999999999999999997521               1110   12233222212111  123467899999999999


Q ss_pred             ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .|.......++.+|++++|+|..+.-.......| ..+..    .+.|.+++.||+|..
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~  151 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK----ENVKPVLFINKVDRL  151 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH----cCCCEEEEEEChhcc
Confidence            9988888899999999999998774322222222 22211    256788999999953

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.57  E-value=3.5e-14  Score=105.82  Aligned_cols=109  Identities=16%  Similarity=0.080  Sum_probs=70.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC---CCCCc--cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCc
Q psy10117          4 KILILGPIMAGKTVLANALCDLT---TAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVH   78 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   78 (135)
                      -|.++|..++|||||+++|.+..   .+.+.  ..|+...+..+..     .....+++||+||++.|.......+..+|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~-----~~g~~i~~IDtPGhe~fi~~m~~g~~~~D   76 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ-----PDGRVLGFIDVPGHEKFLSNMLAGVGGID   76 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec-----CCCcEEEEEECCCHHHHHHHHHHHhhcCC
Confidence            47899999999999999998632   22222  2232222222111     12345899999999998776777788999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ++++|+|+++.-. ....+.+..+ ...   +.| ++||.||+|.
T Consensus        77 ~~lLVVda~eg~~-~qT~ehl~il-~~l---gi~~iIVVlNKiDl  116 (614)
T PRK10512         77 HALLVVACDDGVM-AQTREHLAIL-QLT---GNPMLTVALTKADR  116 (614)
T ss_pred             EEEEEEECCCCCc-HHHHHHHHHH-HHc---CCCeEEEEEECCcc
Confidence            9999999887321 1222222222 211   344 6899999995

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.54  E-value=8e-14  Score=99.84  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC---CC--ccCCcceeEEEEEee--------------eecC------CceEEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA---EE--YHPTQGVRIVECEHS--------------YALD------TSKTEIE   56 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~--~~~t~~~~~~~~~~~--------------~~~~------~~~~~~~   56 (135)
                      .++|+++|+.++|||||+.+|.+....   .+  ...|+...+......              ...+      .....++
T Consensus         9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   88 (411)
T PRK04000          9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS   88 (411)
T ss_pred             cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence            478999999999999999999653111   11  112222211111110              0000      1136899


Q ss_pred             EEecCCCcccccchHHhhccCcEEEEEEeCCCcc----hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        57 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||+||++.|..........+|++++|+|++++.    +.+.+.    .+. ..+  ..|+++|+||+|.
T Consensus        89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~-~~~--i~~iiVVlNK~Dl  151 (411)
T PRK04000         89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALD-IIG--IKNIVIVQNKIDL  151 (411)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcC--CCcEEEEEEeecc
Confidence            9999999887654444455679999999998643    233222    221 111  2478999999995

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.53  E-value=2e-13  Score=97.47  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=71.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC-----------C-C--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT-----------A-E--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~-----------~-~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|..++|||||+++|++...           . .  ..+...|.+........  +.....+.+||+||++.|.
T Consensus        12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~--~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY--ETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE--cCCCEEEEEEECCchHHHH
Confidence            46899999999999999999974210           0 0  01111232222222221  2245678999999999886


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~  122 (135)
                      .........+|++++|+|+.+...- ...+.+..+...    ++|. +++.||+|.
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~----gi~~iIvvvNK~Dl  140 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV----GVPYIVVFLNKCDM  140 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCEEEEEEEeccc
Confidence            6555556788999999999874322 222333333222    4564 578999995

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.53  E-value=7e-14  Score=95.26  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-CCccCC-cceeEEEEEeeeecCCceEEEEEEecCCC-c-----ccccchHH--h
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-EEYHPT-QGVRIVECEHSYALDTSKTEIELWDTSGD-H-----KFESVWPA--F   73 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-~-----~~~~~~~~--~   73 (135)
                      -|+|.|.|+||||||++.+++.++. ..|.-| .++..-.+..      ....+++.||||. +     +..-..+.  .
T Consensus       170 TivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~------~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         170 TIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER------GYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             eEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec------CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            5899999999999999999997654 223222 2333333333      5568999999993 2     22111111  1


Q ss_pred             hc-cCcEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         74 QR-DVHGIIFVFNSGVPGH--ISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        74 ~~-~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++ -+++++|++|.+....  .+.=..+++++...-   +.|+++|.||.|
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D  291 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKID  291 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEeccc
Confidence            22 4688999999986554  344345666664332   489999999999

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.53  E-value=1.9e-13  Score=88.94  Aligned_cols=112  Identities=12%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-------chH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-------VWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~   71 (135)
                      .+|+++|.+|+|||||+|.+++.......    ..|..........      ....+.+.||||-.....       ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~------~~~~i~viDTPG~~d~~~~~~~~~~~i~   74 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW------DGRRVNVIDTPGLFDTSVSPEQLSKEIV   74 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE------CCeEEEEEECcCCCCccCChHHHHHHHH
Confidence            47999999999999999999987543221    2233322222222      445899999999543311       111


Q ss_pred             ----HhhccCcEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 ----AFQRDVHGIIFVFNSGVPGH-ISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ----~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                          ....+.|++++|.++.+... ...+..++.++.....  -.+++++.|++|.
T Consensus        75 ~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~  128 (196)
T cd01852          75 RCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKV--LDHTIVLFTRGDD  128 (196)
T ss_pred             HHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHh--HhcEEEEEECccc
Confidence                11346899999999876221 2222334433322111  2588899999984

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12735 elongation factor Tu; Reviewed

Probab=99.53  E-value=2.3e-13  Score=97.18  Aligned_cols=114  Identities=14%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC-----------C---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT-----------A---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~-----------~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|..++|||||+++|++...           .   ...+...|.+........  +.....+.++|+||++.|.
T Consensus        12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~--~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY--ETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE--cCCCcEEEEEECCCHHHHH
Confidence            46899999999999999999986210           0   001112233322222211  1244578999999998876


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEE-EEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL-LIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~  122 (135)
                      ......+..+|++++|+|..+... ....+++..+..    .++|.+ ++.||+|.
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl  140 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDM  140 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCC
Confidence            656666778999999999987432 222333333322    246755 67999995

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.53  E-value=8.3e-14  Score=83.94  Aligned_cols=88  Identities=10%  Similarity=0.008  Sum_probs=67.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCcc-CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +|++++|+.|+|||+|+.++....+...+. ++.+                             +......+++.+++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------------~~~~~~~~~~s~~~~~   51 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------------IDVYDPTSYESFDVVL   51 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------------hhhccccccCCCCEEE
Confidence            589999999999999999998776643332 3333                             2223345667889999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .||+..+.++++.+  |...+....+ .++|.++++||.|.
T Consensus        52 ~v~~~~~~~s~~~~--~~~~i~~~~k-~dl~~~~~~nk~dl   89 (124)
T smart00010       52 QCWRVDDRDSADNK--NVPEVLVGNK-SDLPILVGGNRDVL   89 (124)
T ss_pred             EEEEccCHHHHHHH--hHHHHHhcCC-CCCcEEEEeechhh
Confidence            99999999998766  8877765543 47899999999994

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.51  E-value=2.8e-13  Score=89.85  Aligned_cols=114  Identities=11%  Similarity=0.036  Sum_probs=70.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCcc----------------CC-------cceeEEE----EEee-------eecC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYH----------------PT-------QGVRIVE----CEHS-------YALD   49 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~----------------~t-------~~~~~~~----~~~~-------~~~~   49 (135)
                      ||+++|+.++|||||+.++..+.+.+...                -+       .|.+...    +...       ...+
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999766542110                00       1111000    0000       0011


Q ss_pred             CceEEEEEEecCCCcccccchHHhhc--cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         50 TSKTEIELWDTSGDHKFESVWPAFQR--DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        50 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....+++.|+||++.|.......+.  .+|++++|+|+..... .....++..+..    .++|+++|.||+|.
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~  150 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDL  150 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccc
Confidence            23467899999999888654444443  6899999999876533 222334443322    25789999999994

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12736 elongation factor Tu; Reviewed

Probab=99.50  E-value=3.7e-13  Score=96.05  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC--------------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE--------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|+.++|||||+.+|++.....              ..+...|.+........  +.....+.++|+||++.|.
T Consensus        12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~--~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY--ETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe--cCCCcEEEEEECCCHHHHH
Confidence            4689999999999999999998632100              01112233332222222  1245578999999998886


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      .....-...+|++++|+|..+... ....+++..+...    ++| ++++.||+|.
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~----g~~~~IvviNK~D~  140 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV----GVPYLVVFLNKVDL  140 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc----CCCEEEEEEEecCC
Confidence            655666678999999999876422 1222333333222    466 6789999995

>PLN03126 Elongation factor Tu; Provisional

Probab=99.49  E-value=5.5e-13  Score=96.90  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC------CCC--------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT------TAE--------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~------~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   68 (135)
                      ++|+++|..++|||||+++|+...      ...        ..+...|.+........  +.....++++|+||++.|-.
T Consensus        82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~--~~~~~~i~liDtPGh~~f~~  159 (478)
T PLN03126         82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEY--ETENRHYAHVDCPGHADYVK  159 (478)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEE--ecCCcEEEEEECCCHHHHHH
Confidence            689999999999999999999521      100        11222333322221111  12455889999999998877


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      .....+..+|++++|+|..+... ....+++..+...    ++| ++++.||+|.
T Consensus       160 ~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~----gi~~iIvvvNK~Dl  209 (478)
T PLN03126        160 NMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV----GVPNMVVFLNKQDQ  209 (478)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEecccc
Confidence            67777789999999999886533 2234444444322    567 7889999995

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.49  E-value=8e-14  Score=97.66  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhh-----cc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQ-----RD   76 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~-----~~   76 (135)
                      +++|+|+|++|+|||||||.|.+-.....-....|...++.....+..+..-.+.+||.||-.........|+     ..
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~  114 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYR  114 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccc
Confidence            6899999999999999999998754332222222221111111111112334689999999654333344444     46


Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         77 VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        77 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .|.+|++.+    +.|....-|+..-.+..   +.|+.+|-+|+|.
T Consensus       115 yD~fiii~s----~rf~~ndv~La~~i~~~---gK~fyfVRTKvD~  153 (376)
T PF05049_consen  115 YDFFIIISS----ERFTENDVQLAKEIQRM---GKKFYFVRTKVDS  153 (376)
T ss_dssp             -SEEEEEES----SS--HHHHHHHHHHHHT---T-EEEEEE--HHH
T ss_pred             cCEEEEEeC----CCCchhhHHHHHHHHHc---CCcEEEEEecccc
Confidence            788888775    34656655555443332   5799999999994

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK12739 elongation factor G; Reviewed

Probab=99.48  E-value=6.5e-13  Score=100.59  Aligned_cols=112  Identities=17%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC----CC--------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA----EE--------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~----~~--------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      .+|+++|..++|||||+++|+...-.    ..              ....+..+.....+..    ....++++||||+.
T Consensus         9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTPG~~   84 (691)
T PRK12739          9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KGHRINIIDTPGHV   84 (691)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE----CCEEEEEEcCCCHH
Confidence            37999999999999999999742110    00              0111221111112211    45689999999998


Q ss_pred             ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .|...+...++.+|++++|+|..+.-.-.. ...+..+..    .+.|++++.||+|..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~  138 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCC
Confidence            888888889999999999999987643222 222233322    257999999999953

>CHL00071 tufA elongation factor Tu

Probab=99.48  E-value=1.1e-12  Score=93.96  Aligned_cols=114  Identities=16%  Similarity=0.143  Sum_probs=74.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|..++|||||+++|++..-.              ...+...|.+........  ......+.+.|+||+..|.
T Consensus        12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY--ETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE--ccCCeEEEEEECCChHHHH
Confidence            478999999999999999999964110              001111233322211111  1244578899999988876


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ......+..+|++++|+|....-. ....+.+..+..    .++| ++++.||+|.
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~  140 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQ  140 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCC
Confidence            666667789999999999876432 223333333322    2467 7789999995

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.47  E-value=2.3e-12  Score=86.66  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc--c--------c
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE--S--------V   69 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--~--------~   69 (135)
                      .++|+++|.+|||||||+|++++......  ..++ ......+...    .....++++||||-....  .        .
T Consensus        31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~-T~~~~~~~~~----~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSE-TLRVREVSGT----VDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-eEEEEEEEEE----ECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            57999999999999999999999754321  1111 1111111111    244678999999965431  1        0


Q ss_pred             hHHhhc--cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCC-CCceEEEEEecCCC
Q psy10117         70 WPAFQR--DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDL-NNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~  122 (135)
                      ...++.  ..+++++|..++... +... ...++.+...-+. --.++++|.||+|.
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~  161 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAAS  161 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence            122333  568888887665432 2222 2333333322221 12479999999994

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.45  E-value=2.7e-12  Score=92.79  Aligned_cols=114  Identities=16%  Similarity=0.154  Sum_probs=71.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC------CCC------C--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL------TTA------E--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~------~~~------~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|..++|||||+++|.+.      ...      +  ..+...|.+.......+  +.....+.+.|+||++.|.
T Consensus        61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY--ETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE--cCCCeEEEEEECCCccchH
Confidence            368999999999999999999732      100      0  01111222222211211  1245578999999998876


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      .....-...+|++++|+|..+... ....+.+..+..    .++| ++++.||+|.
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDl  189 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDV  189 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeecc
Confidence            655556678999999999876432 222333333322    2577 5788999995

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.45  E-value=9.4e-13  Score=94.29  Aligned_cols=114  Identities=16%  Similarity=0.086  Sum_probs=70.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-C------------------------------ccCCcceeEEEEEeeeecCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-E------------------------------YHPTQGVRIVECEHSYALDTS   51 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~------------------------------~~~t~~~~~~~~~~~~~~~~~   51 (135)
                      +||+++|+.++|||||+.+|+...-.- .                              .+...|.+...-..  .....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~--~~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYR--YFSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeE--EEccC
Confidence            589999999999999999997432110 0                              00011111111111  11224


Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++.++|+||++.|.......+..+|++++|+|......-...+.| ..+ ...+  ..+++++.||+|.
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~-~~~~--~~~iivviNK~D~  145 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIA-SLLG--IRHVVLAVNKMDL  145 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHH-HHcC--CCcEEEEEEeccc
Confidence            56889999999998866666678899999999998765322111222 112 1111  3468999999995

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.44  E-value=1.8e-12  Score=94.32  Aligned_cols=115  Identities=17%  Similarity=0.068  Sum_probs=70.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CC------------ccC------------------CcceeEEEEEeeeecCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EE------------YHP------------------TQGVRIVECEHSYALDT   50 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~------------~~~------------------t~~~~~~~~~~~~~~~~   50 (135)
                      .++|+++|..++|||||+.+|+...-. ..            ...                  ..|.+...-..  ....
T Consensus        27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~--~~~~  104 (474)
T PRK05124         27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR--YFST  104 (474)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE--Eecc
Confidence            379999999999999999999854211 00            000                  01111111111  1122


Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....+.++|+||++.|.......+..+|++++|+|+...-.-.....+ ..+ ...+  ..|++++.||+|.
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~-~~lg--~~~iIvvvNKiD~  172 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIA-TLLG--IKHLVVAVNKMDL  172 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHH-HHhC--CCceEEEEEeecc
Confidence            456889999999988865555567899999999998764321111111 111 1111  2478999999995

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.43  E-value=1.9e-12  Score=89.73  Aligned_cols=84  Identities=26%  Similarity=0.299  Sum_probs=58.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeee--------------ecCCceEEEEEEecCCC-
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSY--------------ALDTSKTEIELWDTSGD-   63 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~--------------~~~~~~~~~~i~d~~g~-   63 (135)
                      |.++|.++||||||++++++....      .+..|++|..+.......              ......+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987643      234555555433211010              01124478999999997 


Q ss_pred             ---cccccchHHh---hccCcEEEEEEeCCC
Q psy10117         64 ---HKFESVWPAF---QRDVHGIIFVFNSGV   88 (135)
Q Consensus        64 ---~~~~~~~~~~---~~~~~~~i~v~d~~~   88 (135)
                         ++++.+...|   +++||++++|+|+..
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               4555555554   789999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.43  E-value=7.1e-13  Score=88.56  Aligned_cols=114  Identities=16%  Similarity=0.252  Sum_probs=72.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-------cccchHHhh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-------FESVWPAFQ   74 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~   74 (135)
                      .++++++|.+|+|||||+|+++.+...+-.....+.+...+... ..  ..-.+.+||+||-+.       ++.....++
T Consensus        39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~--~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SY--DGENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hc--cccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            46899999999999999999997554322211222211111111 11  224789999999553       555566677


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ...|.++.+.+..|+.---....| .++.....  +.+++++.|.+|
T Consensus       116 ~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~~--~~~~i~~VtQ~D  159 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDEDFL-RDVIILGL--DKRVLFVVTQAD  159 (296)
T ss_pred             hhccEEEEeccCCCccccCCHHHH-HHHHHhcc--CceeEEEEehhh
Confidence            889999999999887532222333 33322222  489999999999

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.43  E-value=1.1e-11  Score=85.03  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=66.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC-ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE-YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~   73 (135)
                      .++|+++|.+|+||||++|++++...... ...+.+........  .  .....++++||||.......       ...+
T Consensus        38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~--~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR--T--RAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE--E--ECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            46899999999999999999998754211 11111221111111  1  14568999999996543211       1112


Q ss_pred             h--ccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCC-CCceEEEEEecCCC
Q psy10117         74 Q--RDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDL-NNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~  122 (135)
                      +  ...|+++||..++... +... ...++.+...-+. --.+.+|+.|++|.
T Consensus       114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~  165 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF  165 (313)
T ss_pred             hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence            2  1589999997665332 2222 2333333322110 12478999999994

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.43  E-value=2.3e-12  Score=93.16  Aligned_cols=114  Identities=14%  Similarity=0.128  Sum_probs=74.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-C----------------------------CccCCcceeEEEEEeeeecCCce
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-E----------------------------EYHPTQGVRIVECEHSYALDTSK   52 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~----------------------------~~~~t~~~~~~~~~~~~~~~~~~   52 (135)
                      .++|+++|+.++|||||+.+|+...-. .                            ..+...|.+...-..  ..+...
T Consensus         7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~--~~~~~~   84 (447)
T PLN00043          7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW--KFETTK   84 (447)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE--EecCCC
Confidence            368999999999999999888742110 0                            001111222111111  223356


Q ss_pred             EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHH-------HHHHHHHHHHhccCCCCc-eEEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHIS-------ELLLFYDYFVTQSDLNNH-KCLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~  122 (135)
                      ..+++.|+||++.|.......+..+|++++|+|+.+. .|+       ...+.+..+..    .++ +++++.||+|.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~  157 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDA  157 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccC
Confidence            7899999999999988888899999999999999873 232       33333222211    245 57889999995

>PRK00049 elongation factor Tu; Reviewed

Probab=99.42  E-value=4.4e-12  Score=90.60  Aligned_cols=114  Identities=15%  Similarity=0.145  Sum_probs=73.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .++|+++|..++|||||+++|++....              ...+...|.+........  ......+.+.|+||+..|.
T Consensus        12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~--~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY--ETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE--cCCCeEEEEEECCCHHHHH
Confidence            478999999999999999999873110              001112233322222222  1244578899999998876


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEE-EEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL-LIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~  122 (135)
                      ......+..+|++++|+|..+... .....++..+...    +.|.+ ++.||+|.
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~  140 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDM  140 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCC
Confidence            666666789999999999976432 2223333333222    56865 68999995

>KOG3886|consensus

Probab=99.41  E-value=5e-13  Score=87.23  Aligned_cols=116  Identities=20%  Similarity=0.244  Sum_probs=81.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc-----ccchHH
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF-----ESVWPA   72 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~   72 (135)
                      ++-||+++|.+|+||||+=..+......   ....+|+++......+-     ....+++||++|++.+     ......
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-----Gnl~LnlwDcGgqe~fmen~~~~q~d~   77 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-----GNLVLNLWDCGGQEEFMENYLSSQEDN   77 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-----hhheeehhccCCcHHHHHHHHhhcchh
Confidence            3568999999999999987766644322   23445555544333321     4478999999999844     335566


Q ss_pred             hhccCcEEEEEEeCCCcchHH---HHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHIS---ELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .+++.++++++||+...+--.   .-+.-++.+.++.+  ...+.+..+|.|..
T Consensus        78 iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP--~AkiF~l~hKmDLv  129 (295)
T KOG3886|consen   78 IFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP--EAKIFCLLHKMDLV  129 (295)
T ss_pred             hheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC--cceEEEEEeechhc
Confidence            788999999999998876433   33445566655544  78999999999943

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.41  E-value=3e-12  Score=96.23  Aligned_cols=115  Identities=14%  Similarity=0.034  Sum_probs=70.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC-------------ccCC------------------cceeEEEEEeeeecCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE-------------YHPT------------------QGVRIVECEHSYALDT   50 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-------------~~~t------------------~~~~~~~~~~~~~~~~   50 (135)
                      .++|+++|++++|||||+++|+...-.-.             ...|                  .|.+...-..  ....
T Consensus        24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~--~~~~  101 (632)
T PRK05506         24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR--YFAT  101 (632)
T ss_pred             eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee--EEcc
Confidence            36899999999999999999996431100             0000                  0111100000  1112


Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....+.++|+||++.|..........+|++++|+|......-. ..+.+..+...   ...+++++.||+|.
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~  169 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDL  169 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEeccc
Confidence            4457889999999887655556678999999999997653211 11122222111   13578999999995

>PRK00007 elongation factor G; Reviewed

Probab=99.41  E-value=4.6e-12  Score=96.08  Aligned_cols=113  Identities=18%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcC--CC--CCCc------------cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDL--TT--AEEY------------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~--~~--~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|..++|||||+++|+..  ..  ....            +...|.+.........  .....+++.||||+..|.
T Consensus        12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~--~~~~~~~liDTPG~~~f~   89 (693)
T PRK00007         12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF--WKDHRINIIDTPGHVDFT   89 (693)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE--ECCeEEEEEeCCCcHHHH
Confidence            8999999999999999999741  11  0000            0112222211111111  145689999999998887


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ......++.+|++++|+|....-.......| ..+..    .+.|.+++.||+|..
T Consensus        90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~  140 (693)
T PRK00007         90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence            6677788899999999998765433322222 22322    257889999999953

>PRK12740 elongation factor G; Reviewed

Probab=99.40  E-value=2.8e-12  Score=97.02  Aligned_cols=105  Identities=21%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             ECCCCCChHHHHHHHhcCCCC----CC----------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          8 LGPIMAGKTVLANALCDLTTA----EE----------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         8 iG~~~~GKssli~~l~~~~~~----~~----------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+.++|||||+++|+...-.    ..                ...|++.....+..      ....+++||+||+..+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~------~~~~i~liDtPG~~~~~   74 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW------KGHKINLIDTPGHVDFT   74 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE------CCEEEEEEECCCcHHHH
Confidence            699999999999999542110    00                11112211122222      56789999999998887


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+..+++.+|++++|+|.+..........| ..+..    .+.|+++|.||+|..
T Consensus        75 ~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~  125 (668)
T PRK12740         75 GEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence            7788899999999999999887665444333 23322    268999999999943

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.40  E-value=3.1e-12  Score=98.64  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=76.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-----------CCc---cCCcceeEE--EEEeeee------------cCCceEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-----------EEY---HPTQGVRIV--ECEHSYA------------LDTSKTEI   55 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-----------~~~---~~t~~~~~~--~~~~~~~------------~~~~~~~~   55 (135)
                      +|+++|+.++|||||+.+|+...-.           .++   +...|.++.  .......            .+.....+
T Consensus        21 ni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  100 (843)
T PLN00116         21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLI  100 (843)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEE
Confidence            8999999999999999999854311           000   011122111  1111111            12246789


Q ss_pred             EEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        56 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++.||||+..|.......++.+|++++|+|+...-.......| ..+..    .+.|++++.||+|..
T Consensus       101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116        101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH----CCCCEEEEEECCccc
Confidence            9999999999988888889999999999998865433222223 23322    368999999999953

>COG2262 HflX GTPases [General function prediction only]

Probab=99.39  E-value=8.6e-12  Score=87.41  Aligned_cols=114  Identities=19%  Similarity=0.191  Sum_probs=75.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCC--CcccccchHHh-----
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG--DHKFESVWPAF-----   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~~~-----   73 (135)
                      ..|.++|..++|||||+|++.+....  +..-.|...+.......     ....+-+-||.|  ++....+...|     
T Consensus       193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-----~g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-----DGRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-----CCceEEEecCccCcccCChHHHHHHHHHHH
Confidence            36899999999999999999976544  22233333332222221     245778889988  22223333333     


Q ss_pred             -hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 -QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                       ...+|.++.|+|.+++...+++..-.+-+ ..-+..++|+++|.||+|.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~  316 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDL  316 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccc
Confidence             24799999999999997666655444433 3334457999999999993

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.39  E-value=6.6e-12  Score=90.81  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC--C-------------------------C--CccCCcceeEEEEEeeeecCCce
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT--A-------------------------E--EYHPTQGVRIVECEHSYALDTSK   52 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~--~-------------------------~--~~~~t~~~~~~~~~~~~~~~~~~   52 (135)
                      .++|+++|+.++|||||+.+|+...-  .                         +  ..+...|.+...-..  ..+...
T Consensus         7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~--~~~~~~   84 (446)
T PTZ00141          7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW--KFETPK   84 (446)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeE--EEccCC
Confidence            47899999999999999998875210  0                         0  001111222111111  223356


Q ss_pred             EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ..+++.|+||++.|..........+|++++|+|.....   .|   ....+.+..+..    ..+| ++++.||+|.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~  157 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDD  157 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccc
Confidence            78999999999999877777788999999999998642   11   122222222221    1455 7799999994

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.39  E-value=2.4e-12  Score=79.06  Aligned_cols=96  Identities=21%  Similarity=0.270  Sum_probs=65.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHhhccCcE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAFQRDVHG   79 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~~~   79 (135)
                      ||+++|+.|||||||+++|.+...  .+..|..+.+.              =++.||||.=    .+....-....+||.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~--------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~   66 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY--------------DNTIDTPGEYIENPRFYHALIVTAQDADV   66 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec--------------ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence            799999999999999999999654  34455444322              2568999931    222223334458999


Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ++++.|.+++.+.  ...-+...      -+.|++=|.||+|..
T Consensus        67 V~ll~dat~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   67 VLLLQDATEPRSV--FPPGFASM------FNKPVIGVITKIDLP  102 (143)
T ss_pred             EEEEecCCCCCcc--CCchhhcc------cCCCEEEEEECccCc
Confidence            9999999987542  11111111      157999999999964

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG3905|consensus

Probab=99.39  E-value=7.8e-12  Score=85.54  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=76.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccC----cE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDV----HG   79 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~----~~   79 (135)
                      +|+++|+.|+|||||+.+|.+.+   ++.+..|..|..............++++|-..|.-.+..+....+...    ..
T Consensus        54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            68999999999999999999865   466777777766666655556778899999999888777766666533    46


Q ss_pred             EEEEEeCCCcch-HHHHHHHHHHHH
Q psy10117         80 IIFVFNSGVPGH-ISELLLFYDYFV  103 (135)
Q Consensus        80 ~i~v~d~~~~~s-~~~~~~~~~~i~  103 (135)
                      +|++.|++++-. ++.++.|..-+.
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~  155 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLR  155 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHH
Confidence            789999999954 677788875544

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.38  E-value=1.4e-11  Score=84.24  Aligned_cols=116  Identities=17%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCc--------cCCcceeEEEEEeeeecCCceEEEEEEecCCCccc------
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEY--------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF------   66 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------   66 (135)
                      ++++|+|+|++|+|||||++.|++.......        .................++..+.++++||||-...      
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4789999999999999999999986543221        11123334444444456678899999999992210      


Q ss_pred             -cc-------chHHhh-------------ccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         67 -ES-------VWPAFQ-------------RDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        67 -~~-------~~~~~~-------------~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                       ..       ....++             .+.|+++|.++.+... +..+ ...++++.     ...++|-|..|.|.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~  154 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADT  154 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccc
Confidence             00       001111             1568999999976532 2222 34555552     25788999999993

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1423|consensus

Probab=99.38  E-value=5.7e-12  Score=85.42  Aligned_cols=112  Identities=11%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------------cch
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------------SVW   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------------~~~   70 (135)
                      .+|+++|.|++|||||.|.+++.+...........   .....--.......+-++||||.-.-.            +..
T Consensus        73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT---r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT---RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             EEEEEEcCCCcchhhhhhHhhCCccccccccccce---eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            57999999999999999999998765322111111   111111112256789999999932111            112


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .....+||.+++++|+++....-+ ...+..+..+   ..+|-++|.||.|
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid  196 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKID  196 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchh
Confidence            234568999999999996432111 2233333333   3689999999999

>smart00275 G_alpha G protein alpha subunit

Probab=99.38  E-value=1.1e-11  Score=86.93  Aligned_cols=85  Identities=19%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----------chHHHHHHHHH
Q psy10117         31 YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----------GHISELLLFYD  100 (135)
Q Consensus        31 ~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~  100 (135)
                      ..||.|+....+..      ....+.+||.+|+...+..|..+|.++++++||+|+++-          ..+.+....++
T Consensus       168 r~~T~Gi~~~~f~~------~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~  241 (342)
T smart00275      168 RVPTTGIQETAFIV------KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFE  241 (342)
T ss_pred             eCCccceEEEEEEE------CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHH
Confidence            45777877666665      567899999999999999999999999999999999973          35677777788


Q ss_pred             HHHhccCCCCceEEEEEecCC
Q psy10117        101 YFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus       101 ~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .+.+.....+.|++|++||.|
T Consensus       242 ~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      242 SICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             HHHcCccccCCcEEEEEecHH
Confidence            888777777899999999999

Subunit of G proteins that contains the guanine nucleotide binding site

>PTZ00416 elongation factor 2; Provisional

Probab=99.36  E-value=8.7e-12  Score=96.10  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC---C--------C---ccCCcceeEE--EEEeeee------cCCceEEEEEEecC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA---E--------E---YHPTQGVRIV--ECEHSYA------LDTSKTEIELWDTS   61 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~---~--------~---~~~t~~~~~~--~~~~~~~------~~~~~~~~~i~d~~   61 (135)
                      +|+++|+.++|||||+.+|+...-.   .        +   .+...|.++.  .......      .+.....+++.|||
T Consensus        21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP  100 (836)
T PTZ00416         21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP  100 (836)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence            8999999999999999999863211   0        0   0011111111  1111111      11235789999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |+..|.......++.+|++++|+|..+.-.... ...+..+..    .+.|++++.||+|..
T Consensus       101 G~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        101 GHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             CHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence            999988888888999999999999887543222 222333322    257999999999953

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=9.6e-12  Score=89.56  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=86.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF   84 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   84 (135)
                      |.++|+-..|||||+..+-.........-.+......++.+.+.. ....+.+.||||++.|..++..=.+-+|.+++|+
T Consensus         8 VtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV   86 (509)
T COG0532           8 VTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAFTAMRARGASVTDIAILVV   86 (509)
T ss_pred             EEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence            789999999999999999998777666666666666777655321 3458999999999999999999889999999999


Q ss_pred             eCCCc---chHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         85 NSGVP---GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        85 d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +++|.   ++.+.+.        +....+.|++++.||+|..
T Consensus        87 a~dDGv~pQTiEAI~--------hak~a~vP~iVAiNKiDk~  120 (509)
T COG0532          87 AADDGVMPQTIEAIN--------HAKAAGVPIVVAINKIDKP  120 (509)
T ss_pred             EccCCcchhHHHHHH--------HHHHCCCCEEEEEecccCC
Confidence            99874   2333322        2223489999999999954

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.35  E-value=7.6e-12  Score=95.38  Aligned_cols=114  Identities=22%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC--C---------CccC---CcceeEE--EEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA--E---------EYHP---TQGVRIV--ECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~--~---------~~~~---t~~~~~~--~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|+++|+.++|||||+.+|+...-.  .         ++.+   ..|.++.  ........++....+++.||||+..|.
T Consensus        22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~  101 (731)
T PRK07560         22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG  101 (731)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH
Confidence            6999999999999999999853211  0         0000   0111111  111111112356789999999999998


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ......++.+|++++|+|....-.-.....|. .+.+.    +.|.+++.||+|.
T Consensus       102 ~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~----~~~~iv~iNK~D~  151 (731)
T PRK07560        102 GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE----RVKPVLFINKVDR  151 (731)
T ss_pred             HHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc----CCCeEEEEECchh
Confidence            88888899999999999987653322223332 22222    4577999999994

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.34  E-value=3.2e-11  Score=85.96  Aligned_cols=85  Identities=27%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-Cc-----cCCcceeEEEEEee---------e-----ecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-EY-----HPTQGVRIVECEHS---------Y-----ALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~-----~~t~~~~~~~~~~~---------~-----~~~~~~~~~~i~d~~g   62 (135)
                      ++|.++|.++||||||+++|++..... .+     .|+.|.........         .     ........+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876542 22     34444322111000         0     0012347799999999


Q ss_pred             C----cccccchHHh---hccCcEEEEEEeCC
Q psy10117         63 D----HKFESVWPAF---QRDVHGIIFVFNSG   87 (135)
Q Consensus        63 ~----~~~~~~~~~~---~~~~~~~i~v~d~~   87 (135)
                      .    +..+.+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3444455556   78999999999997

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.34  E-value=1.5e-11  Score=90.84  Aligned_cols=109  Identities=24%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc------ccchHHhhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF------ESVWPAFQR   75 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------~~~~~~~~~   75 (135)
                      +.+++++|.|+||||||+|++++....-...|.+.++-.+-....    ....+++.|.||--..      +.....|+.
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~----~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY----KGHEIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe----cCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            467999999999999999999997665444455555433333322    3345899999994322      223334443


Q ss_pred             --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                        +.|+++-|.|.++-+.   -.+.--++...    +.|++++.|++|
T Consensus        79 ~~~~D~ivnVvDAtnLeR---nLyltlQLlE~----g~p~ilaLNm~D  119 (653)
T COG0370          79 EGKPDLIVNVVDATNLER---NLYLTLQLLEL----GIPMILALNMID  119 (653)
T ss_pred             cCCCCEEEEEcccchHHH---HHHHHHHHHHc----CCCeEEEeccHh
Confidence              6799999999988542   22222233221    689999999999

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.32  E-value=5.7e-11  Score=75.34  Aligned_cols=64  Identities=14%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             EEEEEEecCCCc----ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117         53 TEIELWDTSGDH----KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVK  120 (135)
Q Consensus        53 ~~~~i~d~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  120 (135)
                      ..+.|.|+||..    ........++..+|++++|.+....-+-.....+.+.....    ...+++|.||.
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence            457899999953    33466788889999999999998866555556665555333    33488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.32  E-value=4.7e-11  Score=86.49  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc----cCcE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR----DVHG   79 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----~~~~   79 (135)
                      .|+|+|..++|||||+.+|.+.+   ++.++.+..|......-........+++|-..|...+..+....+.    .-..
T Consensus        27 ~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~  103 (472)
T PF05783_consen   27 SVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL  103 (472)
T ss_pred             eEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence            68999999999999999987643   4557777777665554443345678999999987777776666555    2368


Q ss_pred             EEEEEeCCCcchH-HHHHHHHHHH
Q psy10117         80 IIFVFNSGVPGHI-SELLLFYDYF  102 (135)
Q Consensus        80 ~i~v~d~~~~~s~-~~~~~~~~~i  102 (135)
                      +|+|.|++.|-.+ +.+..|+..+
T Consensus       104 vvIvlDlS~PW~~~esL~~W~~vl  127 (472)
T PF05783_consen  104 VVIVLDLSKPWNIMESLEKWLSVL  127 (472)
T ss_pred             EEEEecCCChHHHHHHHHHHHHHH
Confidence            8999999999764 5667665433

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.29  E-value=8.3e-11  Score=77.52  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----c---hH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----V---WP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~   71 (135)
                      ++|+++|.+|+||||++|.+++.......    ..|..........      ....+.|+||||--....    .   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~------~g~~v~VIDTPGl~d~~~~~~~~~~~i~   74 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV------DGRQVTVIDTPGLFDSDGSDEEIIREIK   74 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE------TTEEEEEEE--SSEETTEEHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee------cceEEEEEeCCCCCCCcccHHHHHHHHH
Confidence            58999999999999999999987664332    1222222222211      557899999999321111    1   11


Q ss_pred             H----hhccCcEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         72 A----FQRDVHGIIFVFNSGVPGH-ISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        72 ~----~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .    ...+.+++++|+....-.. -..+..++..+....-  -.-++||.+..|
T Consensus        75 ~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d  127 (212)
T PF04548_consen   75 RCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHAD  127 (212)
T ss_dssp             HHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGG
T ss_pred             HHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhcc
Confidence            1    1246899999999883221 1222334444433221  235777888887

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1145|consensus

Probab=99.29  E-value=2.1e-11  Score=88.15  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=85.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF   84 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   84 (135)
                      |.++|.-.-|||||+..|-.........-.+..-+-.+.....   ..-++++.||||+..|..|+.+-..-+|.+++|+
T Consensus       156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVV  232 (683)
T KOG1145|consen  156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVV  232 (683)
T ss_pred             EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CCCEEEEecCCcHHHHHHHHhccCccccEEEEEE
Confidence            6799999999999999999877665544555554445555543   3368999999999999999999888999999999


Q ss_pred             eCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCccc
Q psy10117         85 NSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDS  126 (135)
Q Consensus        85 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~  126 (135)
                      ...|.--    .+-++.| ++....+.|++++.||||....+
T Consensus       233 AadDGVm----pQT~EaI-khAk~A~VpiVvAinKiDkp~a~  269 (683)
T KOG1145|consen  233 AADDGVM----PQTLEAI-KHAKSANVPIVVAINKIDKPGAN  269 (683)
T ss_pred             EccCCcc----HhHHHHH-HHHHhcCCCEEEEEeccCCCCCC
Confidence            9987421    2222222 23333589999999999965443

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.28  E-value=6.3e-11  Score=84.17  Aligned_cols=112  Identities=16%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-----------hH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-----------WP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~   71 (135)
                      +||+++|.|++|||||+|++++.+-.- ..+..|.+..........  ...++.+.||.|-.+-...           ..
T Consensus       179 ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~--~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         179 IKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFER--DGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             eEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEE--CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            799999999999999999999975431 112222222222222221  4568899999994322111           12


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....++.+++|.|.+.+-+-... .....+.    ....++++|.||.|.
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~----~~g~~~vIvvNKWDl  301 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDL-RIAGLIE----EAGRGIVIVVNKWDL  301 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHH-HHHHHHH----HcCCCeEEEEEcccc
Confidence            245689999999999876542221 1111221    136899999999994

>KOG0082|consensus

Probab=99.28  E-value=1.1e-10  Score=81.22  Aligned_cols=84  Identities=21%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc----------hHHHHHHHHHH
Q psy10117         32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----------HISELLLFYDY  101 (135)
Q Consensus        32 ~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~  101 (135)
                      .+|.|+....+..      ...++.+.|.+||..-+..|.++|.++++++||.++++-+          .+.+.....+.
T Consensus       180 ~~T~GI~e~~F~~------k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~s  253 (354)
T KOG0082|consen  180 VPTTGIVEVEFTI------KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFES  253 (354)
T ss_pred             cCcCCeeEEEEEe------CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHH
Confidence            4455655555555      5588999999999888889999999999999999998532          13444567778


Q ss_pred             HHhccCCCCceEEEEEecCC
Q psy10117        102 FVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus       102 i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +.+++-..+.+++++.||.|
T Consensus       254 I~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  254 ICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             HhcCcccccCcEEEEeecHH
Confidence            88888778999999999999

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.28  E-value=3e-11  Score=83.01  Aligned_cols=110  Identities=15%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAF   73 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~   73 (135)
                      .|-++|-|++|||||++.++..++.      ++..|..|+-..         ...-++.+=|.||.-    .-..+-..|
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---------~~~~sfv~ADIPGLIEGAs~G~GLG~~F  231 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---------DGGESFVVADIPGLIEGASEGVGLGLRF  231 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---------cCCCcEEEecCcccccccccCCCccHHH
Confidence            3558999999999999999986654      334455554221         133468899999832    222233333


Q ss_pred             ---hccCcEEEEEEeCCCcch---HHHHHHHHHHHHhc-cCCCCceEEEEEecCCC
Q psy10117         74 ---QRDVHGIIFVFNSGVPGH---ISELLLFYDYFVTQ-SDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ---~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~  122 (135)
                         +++|..+++|+|++..+.   .+..+....++..+ ..+.+.|.+||+||+|.
T Consensus       232 LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~  287 (369)
T COG0536         232 LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL  287 (369)
T ss_pred             HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence               457999999999986553   56666666677665 34568999999999994

>KOG1191|consensus

Probab=99.27  E-value=9.2e-11  Score=83.87  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-ccc--------chHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FES--------VWPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~--------~~~~~   73 (135)
                      ++|+++|+|+||||||+|.|...... -..|-.|.+.......+.  -+.+++.+.||.|-.+ -..        ....-
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~~~drs-IVSpv~GTTRDaiea~v~--~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALSREDRS-IVSPVPGTTRDAIEAQVT--VNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCce-EeCCCCCcchhhheeEee--cCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            68999999999999999999986543 122222332223333333  2778999999999433 111        12224


Q ss_pred             hccCcEEEEEEeC--CCcchHHHHHHHHHHHHhc-----cCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNS--GVPGHISELLLFYDYFVTQ-----SDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~--~~~~s~~~~~~~~~~i~~~-----~~~~~~p~ivv~nK~D~  122 (135)
                      ...+|.+++|+|.  ++-++-..+...++.....     +.....|++++.||.|.
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~  401 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL  401 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence            5689999999999  4433333334444443221     12235799999999993

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.26  E-value=3.9e-11  Score=93.51  Aligned_cols=102  Identities=14%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             CChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecC--------------CceEEEEEEecCCCcccccchHHhhccCc
Q psy10117         13 AGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALD--------------TSKTEIELWDTSGDHKFESVWPAFQRDVH   78 (135)
Q Consensus        13 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   78 (135)
                      ++||||+..+.+........-.+.+.+-.+..+....              ...-.+.+|||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            4599999999987776554455444443444333110              01123899999999999888888888999


Q ss_pred             EEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|+|+++   +++++.+.    .+..    .+.|+++|+||+|.
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL  590 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDL  590 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCC
Confidence            9999999986   44444443    2221    15799999999995

>KOG0468|consensus

Probab=99.23  E-value=1.2e-10  Score=86.09  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=84.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC---------------ccCCcceeEEEEEeee---ecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE---------------YHPTQGVRIVECEHSY---ALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~---------------~~~t~~~~~~~~~~~~---~~~~~~~~~~i~d~~g~~   64 (135)
                      .++.++|+-+.|||+|+..|..+..+..               ++...|+.+.......   +.++..+-+++.||||+-
T Consensus       129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV  208 (971)
T KOG0468|consen  129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV  208 (971)
T ss_pred             EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence            5789999999999999999998776532               1222344333333222   455677889999999999


Q ss_pred             ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .|.......++-+|++++++|+.+.-++.. ...++.    .-..+.|+.+|.||.|
T Consensus       209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikh----aiq~~~~i~vviNKiD  260 (971)
T KOG0468|consen  209 NFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKH----AIQNRLPIVVVINKVD  260 (971)
T ss_pred             cchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHH----HHhccCcEEEEEehhH
Confidence            999999999999999999999987655422 233333    2334789999999999

>cd01882 BMS1 Bms1

Probab=99.21  E-value=2.7e-10  Score=75.77  Aligned_cols=105  Identities=11%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      ..|+++|++|+|||||++.+.+...........|.    +...   .....++.+.|+||.-  .. .....+.+|.+++
T Consensus        40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~---~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll  109 (225)
T cd01882          40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV---TGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL  109 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE---ecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence            35899999999999999999875322212222221    1110   1145678999999853  22 2334578999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ++|.+....... ...+..+..    .+.| +++|.||.|.
T Consensus       110 viDa~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~  145 (225)
T cd01882         110 LIDASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDL  145 (225)
T ss_pred             EEecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEecccc
Confidence            999876443211 222222221    1456 4559999995

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0462|consensus

Probab=99.16  E-value=4.5e-10  Score=81.40  Aligned_cols=119  Identities=19%  Similarity=0.200  Sum_probs=88.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-------------CCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-------------EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-------------~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      |+.|+..-.-|||||..+|+...-.             .+.+...|++....+... +.++..+.+++.||||+-.|...
T Consensus        62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E  141 (650)
T KOG0462|consen   62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE  141 (650)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence            5778888999999999999853221             123455677666665555 34478899999999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccc
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSS  127 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~  127 (135)
                      ..+-+.-|+++++++|.+..-.-..+..+...+.     .+..++.|.||+|....+.
T Consensus       142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adp  194 (650)
T KOG0462|consen  142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADP  194 (650)
T ss_pred             ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCH
Confidence            9999999999999999987654444444433332     2688999999999554443

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.7e-10  Score=79.41  Aligned_cols=117  Identities=14%  Similarity=0.113  Sum_probs=74.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC--CCC---------------------------CccCCcceeEEEEEeeeecCCce
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT--TAE---------------------------EYHPTQGVRIVECEHSYALDTSK   52 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~   52 (135)
                      .++++++|+..+|||||+-+|+.+.  ...                           ..+...|.++..-..  ..+...
T Consensus         7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~--~fet~k   84 (428)
T COG5256           7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHS--KFETDK   84 (428)
T ss_pred             ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEE--EeecCC
Confidence            3689999999999999998888432  110                           011112322211111  222356


Q ss_pred             EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +.++|.|+||+..|-...-.-.+.||++|+|+|+.+.+   .|   -..++.+-.. +..  .-..++|+.||+|.-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La-~tl--Gi~~lIVavNKMD~v  158 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA-RTL--GIKQLIVAVNKMDLV  158 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH-Hhc--CCceEEEEEEccccc
Confidence            78999999998888766666678999999999999874   12   1112222211 111  245899999999963

>smart00053 DYNc Dynamin, GTPase

Probab=99.15  E-value=1.9e-09  Score=72.06  Aligned_cols=66  Identities=15%  Similarity=0.054  Sum_probs=41.3

Q ss_pred             EEEEEEecCCCcc-------------cccchHHhhc-cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117         53 TEIELWDTSGDHK-------------FESVWPAFQR-DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN  118 (135)
Q Consensus        53 ~~~~i~d~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  118 (135)
                      ..+.+.|+||-..             .+.+...|++ ..+.+++|.|+...-+-.......+.+..    ...|+++|.|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~----~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP----QGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH----cCCcEEEEEE
Confidence            6788999999632             1224555677 45688999987653222222233333321    3689999999


Q ss_pred             cCCC
Q psy10117        119 VKPG  122 (135)
Q Consensus       119 K~D~  122 (135)
                      |+|.
T Consensus       201 K~D~  204 (240)
T smart00053      201 KLDL  204 (240)
T ss_pred             CCCC
Confidence            9994

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3887|consensus

Probab=99.14  E-value=2.4e-10  Score=75.49  Aligned_cols=115  Identities=19%  Similarity=0.233  Sum_probs=75.3

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCc---cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc---cchHHhh
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE---SVWPAFQ   74 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---~~~~~~~   74 (135)
                      |+.+|+++|...+||||+-+-..+...|.+.   ++|.-....      ...+.-+.+++||.|||-.+-   -..+..|
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d------~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF   99 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRD------HISNSFINFQVWDFPGQMDFFDPSFDYEMIF   99 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHh------hhhhhhcceEEeecCCccccCCCccCHHHHH
Confidence            4678999999999999998877776654321   111111000      112256789999999986442   2346678


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHh-ccCCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVT-QSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+-+++||+|..+. -.+.+..+...+.+ ++-.+++.+-|+..|.|+
T Consensus       100 ~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDG  147 (347)
T KOG3887|consen  100 RGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDG  147 (347)
T ss_pred             hccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence            999999999998652 23333333333322 333458999999999995

>KOG1707|consensus

Probab=99.13  E-value=1.4e-09  Score=79.27  Aligned_cols=113  Identities=15%  Similarity=0.214  Sum_probs=77.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +++.++|+.++|||.+++.++++........+....+..-.....  +..-.+.+-|.+..+ .......- ..||.+++
T Consensus       426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~--g~~k~LiL~ei~~~~-~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK--GQQKYLILREIGEDD-QDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec--cccceEEEeecCccc-cccccCcc-ceeeeEEE
Confidence            578999999999999999999987766554555544333333222  344556666655431 11111111 67999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||.+++.+|..+...++.-..   ....|+++|+.|+|.
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dl  538 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADL  538 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhh---ccCCceEEEeecccc
Confidence            9999999999887665554322   247999999999994

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=9.6e-10  Score=82.98  Aligned_cols=112  Identities=21%  Similarity=0.186  Sum_probs=79.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC--CC--CC------------ccCCcceeEEEEEeeeecCCc-eEEEEEEecCCCccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLT--TA--EE------------YHPTQGVRIVECEHSYALDTS-KTEIELWDTSGDHKF   66 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~--~~--~~------------~~~t~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~   66 (135)
                      +|.++|+-.+|||||..+++-..  ..  .+            .+...|+++..-.....-  . ...+++.||||+-.|
T Consensus        12 NigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~--~~~~~iNlIDTPGHVDF   89 (697)
T COG0480          12 NIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW--KGDYRINLIDTPGHVDF   89 (697)
T ss_pred             EEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE--cCceEEEEeCCCCcccc
Confidence            78999999999999999888321  11  11            122234444333333321  3 589999999999999


Q ss_pred             ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .......++-+|++++|+|....-....-.-|.+.     ...++|.+++.||+|-
T Consensus        90 t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-----~~~~vp~i~fiNKmDR  140 (697)
T COG0480          90 TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-----DKYGVPRILFVNKMDR  140 (697)
T ss_pred             HHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-----hhcCCCeEEEEECccc
Confidence            99999999999999999999875443333444333     2347999999999993

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.11  E-value=8.6e-10  Score=78.76  Aligned_cols=112  Identities=18%  Similarity=0.259  Sum_probs=83.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      +|+++..-.-|||||+..|+.++-.              .+.+...|+++..+...+.  .+.++++|.||||+..|-..
T Consensus         7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~--~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN--YNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee--cCCeEEEEecCCCcCCccch
Confidence            7899999999999999999975422              1244555666655554432  35689999999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+..++-+|++++++|..+.. .-+.+..++.....    +.+-|||.||+|.
T Consensus        85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDr  132 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDR  132 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCC
Confidence            999999999999999998743 22334444444332    5677889999993

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=9.4e-10  Score=77.98  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=76.0

Q ss_pred             EEEEECCCCCChHHHHHHHhc-CCCCC-------------------CccCCcceeEE--EEEeeeecCCceEEEEEEecC
Q psy10117          4 KILILGPIMAGKTVLANALCD-LTTAE-------------------EYHPTQGVRIV--ECEHSYALDTSKTEIELWDTS   61 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~-~~~~~-------------------~~~~t~~~~~~--~~~~~~~~~~~~~~~~i~d~~   61 (135)
                      ..+|+-.|.+|||||-..|+- +....                   ..+...|++..  ..++.+    ....+++.|||
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y----~~~~iNLLDTP   89 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY----ADCLVNLLDTP   89 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc----CCeEEeccCCC
Confidence            357899999999999987661 11110                   01222344333  333332    56789999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCccc
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDS  126 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~  126 (135)
                      |++.|.......+..+|++++|+|....-.-. ...++ +   -+.+.++|++-+.||.|-++-+
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLf-e---VcrlR~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLF-E---VCRLRDIPIFTFINKLDREGRD  149 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCccHH-HHHHH-H---HHhhcCCceEEEeeccccccCC
Confidence            99999988888899999999999986542111 11222 2   2334579999999999944333

>PRK13768 GTPase; Provisional

Probab=99.09  E-value=3.9e-10  Score=76.19  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=42.9

Q ss_pred             EEEEEecCCCccc---ccchHHhhcc-----CcEEEEEEeCCCcchHHHH--HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         54 EIELWDTSGDHKF---ESVWPAFQRD-----VHGIIFVFNSGVPGHISEL--LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        54 ~~~i~d~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+.+||+||+...   +..+..+++.     ++++++++|.+........  ..|+.......  .+.|+++|.||+|.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhh
Confidence            6789999997653   3444444332     8899999999765443222  23333222111  26899999999994

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.09  E-value=2e-09  Score=80.20  Aligned_cols=116  Identities=15%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCc--cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-------cc---
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-------SV---   69 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~---   69 (135)
                      .++|+++|.+|+||||++|.+++.......  .+... ....+...  .  ....+.|+||||-....       .+   
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~--i--dG~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGL--V--QGVKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEE--E--CCceEEEEECCCCCccccchHHHHHHHHH
Confidence            578999999999999999999997543221  11111 11111111  1  34679999999955321       11   


Q ss_pred             hHHhhc--cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCC-CceEEEEEecCCC
Q psy10117         70 WPAFQR--DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLN-NHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ivv~nK~D~  122 (135)
                      ...++.  ..|++++|..++......+-..+++.+...-+.. -.-+|||.++.|.
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~  248 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS  248 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence            112333  4799999998764433222234555554333311 2367888888883

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.07  E-value=1.9e-09  Score=73.84  Aligned_cols=93  Identities=20%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCc----ccc---cchHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDH----KFE---SVWPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~----~~~---~~~~~~   73 (135)
                      .+++++|+|+||||||++.|++.... .+|..|.      .+.-+ ..+-....+++.|+||--    .-+   ...-..
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT------l~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT------LEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCcee------cccccceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence            47899999999999999999986543 2232221      11111 112267899999999732    111   223445


Q ss_pred             hccCcEEEEEEeCCCcch-HHHHHHHHHH
Q psy10117         74 QRDVHGIIFVFNSGVPGH-ISELLLFYDY  101 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s-~~~~~~~~~~  101 (135)
                      .++||.+++|.|+..... .+.+..-+..
T Consensus       138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~  166 (365)
T COG1163         138 ARNADLIIIVLDVFEDPHHRDIIERELED  166 (365)
T ss_pred             eccCCEEEEEEecCCChhHHHHHHHHHHh
Confidence            789999999999987655 4444444433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.05  E-value=3.7e-10  Score=75.57  Aligned_cols=68  Identities=9%  Similarity=-0.041  Sum_probs=35.8

Q ss_pred             EEEEEecCCCcccccchHHhh--------ccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         54 EIELWDTSGDHKFESVWPAFQ--------RDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        54 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..-++|||||.++-..+....        ...-++++++|.....+- ..+..++..+.-... .+.|.+.|.||+|.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~-~~lP~vnvlsK~Dl  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR-LELPHVNVLSKIDL  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH-HTSEEEEEE--GGG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh-CCCCEEEeeeccCc
Confidence            788999999987765555544        456688999997644331 222222222211111 27899999999994

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.04  E-value=3e-09  Score=77.27  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=71.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC---CC--ccCCcceeEEEEEe-------------eeec--------------C
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA---EE--YHPTQGVRIVECEH-------------SYAL--------------D   49 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~--~~~t~~~~~~~~~~-------------~~~~--------------~   49 (135)
                      .++|.++|.-..|||||+..|++....   .+  -.-|+..-|.....             ....              .
T Consensus        34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (460)
T PTZ00327         34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM  113 (460)
T ss_pred             cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence            478999999999999999999975331   11  11111111111100             0000              0


Q ss_pred             CceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         50 TSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        50 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....+.+.|+||++.|-.....-...+|++++|+|+.+...-....+.+..+ ...+  -.++++|.||+|.
T Consensus       114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lg--i~~iIVvlNKiDl  183 (460)
T PTZ00327        114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMK--LKHIIILQNKIDL  183 (460)
T ss_pred             cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcC--CCcEEEEEecccc
Confidence            01246899999999988766666678999999999998642111222223222 1112  2478999999995

>PTZ00258 GTP-binding protein; Provisional

Probab=99.04  E-value=6.3e-09  Score=73.96  Aligned_cols=85  Identities=25%  Similarity=0.259  Sum_probs=52.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC-c-cCCcceeEEEEEeee-----------ecCCceEEEEEEecCCCccc---
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE-Y-HPTQGVRIVECEHSY-----------ALDTSKTEIELWDTSGDHKF---   66 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-----------~~~~~~~~~~i~d~~g~~~~---   66 (135)
                      ++|.++|.|+||||||+++|.+...... + ..|+..+.......-           ........+.+.|+||...-   
T Consensus        22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~  101 (390)
T PTZ00258         22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASE  101 (390)
T ss_pred             cEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcc
Confidence            6899999999999999999987654322 1 122232222222210           00011345899999995421   


Q ss_pred             -ccchHH---hhccCcEEEEEEeCC
Q psy10117         67 -ESVWPA---FQRDVHGIIFVFNSG   87 (135)
Q Consensus        67 -~~~~~~---~~~~~~~~i~v~d~~   87 (135)
                       +.+...   .++++|++++|+|+.
T Consensus       102 g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        102 GEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence             122223   356899999999984

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.03  E-value=4.3e-09  Score=75.46  Aligned_cols=119  Identities=21%  Similarity=0.204  Sum_probs=87.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC-------------CccCCcceeEEEEEeee---ecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE-------------EYHPTQGVRIVECEHSY---ALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~-------------~~~~t~~~~~~~~~~~~---~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +..++..-.-|||||..|++...-.-             +.+...|++........   ..+++.+.+++.||||+-.|.
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            46778888999999999998643221             13344555554444444   345689999999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccc
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSS  127 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~  127 (135)
                      ....+.+..|.++++++|.+..-.-..+...+..+.     .+.-++-|.||+|....+.
T Consensus        91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp  145 (603)
T COG0481          91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP  145 (603)
T ss_pred             EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH
Confidence            888999999999999999987644444444444442     2788999999999655443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.01  E-value=1.1e-08  Score=71.23  Aligned_cols=116  Identities=15%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC-----ccC---CcceeEEEEEeeeecCCceEEEEEEecCCCc-------c
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE-----YHP---TQGVRIVECEHSYALDTSKTEIELWDTSGDH-------K   65 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-----~~~---t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~   65 (135)
                      +.+.|+++|++|+||||++|.|++......     ..+   ..+.........+..++..+.+++.||||--       .
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999998733321     111   1223333334444666788999999999921       1


Q ss_pred             cc-------cchHHhhc--------------cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         66 FE-------SVWPAFQR--------------DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        66 ~~-------~~~~~~~~--------------~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++       .....|+.              ++|+++|....+. ..+..+ -..++.+..     .+.+|-|..|+|.
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~-----~vNlIPVI~KaD~  174 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK-----RVNLIPVIAKADT  174 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc-----ccCeeeeeecccc
Confidence            11       11111221              4678888887554 334444 345555533     4567777889993

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.00  E-value=6.1e-09  Score=73.31  Aligned_cols=87  Identities=25%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeee---------ecC--CceEEEEEEecCCCccc-
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSY---------ALD--TSKTEIELWDTSGDHKF-   66 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~---------~~~--~~~~~~~i~d~~g~~~~-   66 (135)
                      |.++|.++|.|+||||||++++++......  ...|+...........         ..+  .....+.+.|+||...- 
T Consensus         1 m~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          1 MGLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            568999999999999999999998764321  1222232221222211         000  11235899999995421 


Q ss_pred             ---ccchHHh---hccCcEEEEEEeCC
Q psy10117         67 ---ESVWPAF---QRDVHGIIFVFNSG   87 (135)
Q Consensus        67 ---~~~~~~~---~~~~~~~i~v~d~~   87 (135)
                         +.+...+   ++++|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1222233   56899999999985

>PRK09866 hypothetical protein; Provisional

Probab=99.00  E-value=1.2e-08  Score=76.02  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             EEEEEEecCCCccc-----ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKF-----ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.+.||||-...     .......+.++|+++||+|.....+... ...++.+.+...  ..|+++|.||+|.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K--~~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ--SVPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC--CCCEEEEEEcccC
Confidence            35678899996542     2233446889999999999987543322 222333322211  3699999999995

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.97  E-value=2e-09  Score=66.61  Aligned_cols=54  Identities=26%  Similarity=0.190  Sum_probs=35.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      +++++|.+|+|||||+|++.+..... .....|.+.........  +   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~--~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLT--P---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeC--C---CEEEEECCCc
Confidence            68999999999999999999876542 22222322222222211  1   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.95  E-value=4e-08  Score=69.99  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC--------------ccCCcc-------eeE---EEEEeeeecCCceEEEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE--------------YHPTQG-------VRI---VECEHSYALDTSKTEIEL   57 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--------------~~~t~~-------~~~---~~~~~~~~~~~~~~~~~i   57 (135)
                      ++-|.++|+.++|||||+++|.++...+.              .++..|       ..+   ....+. ..++...++.+
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~-~~~~~~~~Vrl   95 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN-INEGTKFKVRL   95 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe-ccCCCcccEEE
Confidence            35689999999999999999999822211              122223       111   112222 23345678999


Q ss_pred             EecCCCc--------cccc---------------------chHHhhc-cCcEEEEEE-eCC----CcchHHHH-HHHHHH
Q psy10117         58 WDTSGDH--------KFES---------------------VWPAFQR-DVHGIIFVF-NSG----VPGHISEL-LLFYDY  101 (135)
Q Consensus        58 ~d~~g~~--------~~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~~~  101 (135)
                      .||+|-.        +-..                     -....++ +++..++|. |.+    .++.+... ..|+++
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999821        1111                     0122344 788888888 653    11233333 677777


Q ss_pred             HHhccCCCCceEEEEEecCC
Q psy10117        102 FVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus       102 i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +...    +.|++++.||+|
T Consensus       176 Lk~~----~kPfiivlN~~d  191 (492)
T TIGR02836       176 LKEL----NKPFIILLNSTH  191 (492)
T ss_pred             HHhc----CCCEEEEEECcC
Confidence            7543    689999999999

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG2655|consensus

Probab=98.95  E-value=1.9e-08  Score=70.32  Aligned_cols=115  Identities=13%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-------cc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-------KF   66 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~~   66 (135)
                      +.+.++++|++|.|||||+|.|+.......       ..+.....+......+..++..+.+++.||||--       .|
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            468999999999999999999987644321       1111122333333334556788899999999921       12


Q ss_pred             cc-------chHHhh-----------c--cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         67 ES-------VWPAFQ-----------R--DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        67 ~~-------~~~~~~-----------~--~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +.       ....|+           .  ++|+++|.+..+.. .+..+ ...++.+..     .+.++-|..|.|
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~-----~vNiIPVI~KaD  169 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK-----KVNLIPVIAKAD  169 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc-----cccccceeeccc
Confidence            11       122222           1  56888888876543 23334 344555532     466777778998

>cd01900 YchF YchF subfamily

Probab=98.93  E-value=6.9e-09  Score=70.71  Aligned_cols=83  Identities=25%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeee---------ecCC--ceEEEEEEecCCCccc----c
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSY---------ALDT--SKTEIELWDTSGDHKF----E   67 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~---------~~~~--~~~~~~i~d~~g~~~~----~   67 (135)
                      |.++|.|+||||||++++++......  ...|+...........         ..+.  ....+.+.|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57899999999999999999765322  1222232222222211         0000  1235899999994321    1


Q ss_pred             cchHHh---hccCcEEEEEEeCC
Q psy10117         68 SVWPAF---QRDVHGIIFVFNSG   87 (135)
Q Consensus        68 ~~~~~~---~~~~~~~i~v~d~~   87 (135)
                      .+...|   ++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            222233   46899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1547|consensus

Probab=98.87  E-value=7.5e-08  Score=63.84  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc---ccccch
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH---KFESVW   70 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---~~~~~~   70 (135)
                      |+|+|+++|.+|.|||||++.+........       ..-.....+...+.....++...++++.||||--   .....|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            589999999999999999999886433211       1111122233333333556678889999999921   112222


Q ss_pred             HH-----------hhc--------------cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         71 PA-----------FQR--------------DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        71 ~~-----------~~~--------------~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +.           |++              ++++++|.+..+.. ++.-+ -++++.+.+     -+.++-|..|.|
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaD  195 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKAD  195 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeecc
Confidence            21           221              35677777766543 34334 345555532     356677778998

>KOG0705|consensus

Probab=98.86  E-value=2.5e-09  Score=77.72  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=87.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++|+-|+|..++|||+|+.+++.+.+.++..|.-|    .+.-+.-.++...-+.+.|.+|..     -..|...+|++|
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~----~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI  100 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG----RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV  100 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCCcCc----cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence            57899999999999999999999999877766655    222233334567778888887722     245667999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      |||.+.+..+|+.+..+.-.+..+.....+|+++++++.-
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~  140 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH  140 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence            9999999999999988877777666666889999988753

>cd01859 MJ1464 MJ1464

Probab=98.81  E-value=2e-08  Score=63.06  Aligned_cols=54  Identities=28%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .+++++|.+++||||+++++.+.. ...+.++.|.+.......     ....+.+|||||
T Consensus       102 ~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~-----~~~~~~~~DtpG  155 (156)
T cd01859         102 GKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVK-----ITSKIYLLDTPG  155 (156)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEE-----cCCCEEEEECcC
Confidence            578999999999999999999754 334455666533211111     112689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.80  E-value=2.2e-08  Score=63.92  Aligned_cols=55  Identities=27%  Similarity=0.233  Sum_probs=36.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      ++++++|.+++|||||++++.+.... ...+..+.+.........     ..+.++||||-
T Consensus       116 ~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~-----~~~~~iDtpG~  170 (171)
T cd01856         116 IRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS-----PGIYLLDTPGI  170 (171)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec-----CCEEEEECCCC
Confidence            68999999999999999999987653 222322332222222211     35789999983

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.78  E-value=2.3e-08  Score=63.91  Aligned_cols=54  Identities=26%  Similarity=0.318  Sum_probs=36.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      ++++++|.+++|||||+|++.+..... ..+..|.+........     ...+.++|+||
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~-----~~~~~l~DtPG  171 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHL-----DKKVKLLDSPG  171 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEe-----CCCEEEEECcC
Confidence            689999999999999999999865421 2233333322222221     12578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=3e-08  Score=62.35  Aligned_cols=54  Identities=24%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      ++|+++|.+|+|||||+|++.+..... ..+..|.+.....+..     .-.+.+.||||
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~-----~~~~~liDtPG  156 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITL-----MKRIYLIDCPG  156 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEc-----CCCEEEEECcC
Confidence            578899999999999999999865421 2233333222211111     11367999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0458|consensus

Probab=98.74  E-value=6.9e-08  Score=70.65  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-----------------------------CccCCcceeEEEEEeeeecCCceE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-----------------------------EYHPTQGVRIVECEHSYALDTSKT   53 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~   53 (135)
                      +.++++|.-.+|||||+-+++...-..                             ..+...|+++......+.  ....
T Consensus       178 l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe--s~~~  255 (603)
T KOG0458|consen  178 LNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE--SKSK  255 (603)
T ss_pred             eEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--cCce
Confidence            578999999999999998887432110                             123334444433333332  4667


Q ss_pred             EEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hHH---HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         54 EIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HIS---ELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        54 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+.|.|+||+..|-+..-.-...+|++++|+|++..+   .|+   ..++.. .+.+.  +.-..++|+.||+|.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~--Lgi~qlivaiNKmD~  327 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRS--LGISQLIVAINKMDL  327 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHH--cCcceEEEEeecccc
Confidence            8999999998888776666667899999999998643   233   112222 22222  225689999999995

>KOG1954|consensus

Probab=98.72  E-value=2.9e-07  Score=64.60  Aligned_cols=115  Identities=21%  Similarity=0.226  Sum_probs=74.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC---ccCCcceeEEEEEeee---------------------------------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSY---------------------------------   46 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~---------------------------------   46 (135)
                      .=|+++|+-..||||+|+.|+.+.++..   .+||... +.......                                 
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~-Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR-FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce-eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            3489999999999999999999988732   2232211 00000000                                 


Q ss_pred             ---ecCCceEEEEEEecCCCc-----------ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce
Q psy10117         47 ---ALDTSKTEIELWDTSGDH-----------KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK  112 (135)
Q Consensus        47 ---~~~~~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  112 (135)
                         ..+..--+++|.|+||--           .|....+=|..++|.|+++||...-+--++....+..+..+    .-.
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Edk  213 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDK  213 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cce
Confidence               011112568999999932           12233444667999999999987766666667777777554    346


Q ss_pred             EEEEEecCCC
Q psy10117        113 CLLIDNVKPG  122 (135)
Q Consensus       113 ~ivv~nK~D~  122 (135)
                      +-||.||.|.
T Consensus       214 iRVVLNKADq  223 (532)
T KOG1954|consen  214 IRVVLNKADQ  223 (532)
T ss_pred             eEEEeccccc
Confidence            7778899984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.71  E-value=4.3e-08  Score=66.04  Aligned_cols=55  Identities=13%  Similarity=0.127  Sum_probs=48.1

Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++..+...+++++|++++|||++++. +|+.+..|+..+..    .++|+++|+||+|.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL   79 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDL   79 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECccc
Confidence            677778888999999999999999888 89999999987643    36899999999995

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.71  E-value=6.3e-08  Score=66.34  Aligned_cols=55  Identities=29%  Similarity=0.310  Sum_probs=36.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      ++++++|.++||||||+|++.+...... .+..|.+.........     -.+.++||||.
T Consensus       119 ~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~-----~~~~l~DtPG~  173 (276)
T TIGR03596       119 IRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLS-----DGLELLDTPGI  173 (276)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeC-----CCEEEEECCCc
Confidence            6899999999999999999997653211 2222322222222111     25789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.70  E-value=9.3e-08  Score=65.86  Aligned_cols=56  Identities=29%  Similarity=0.303  Sum_probs=37.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      ++++++|.++||||||+|++.+..... ..+..|.+........     ...+.++||||-.
T Consensus       122 ~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~-----~~~~~l~DtPGi~  177 (287)
T PRK09563        122 IRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKL-----GKGLELLDTPGIL  177 (287)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEe-----CCcEEEEECCCcC
Confidence            689999999999999999999865422 1233333322222221     1257899999953

>cd01855 YqeH YqeH

Probab=98.69  E-value=4.7e-08  Score=63.34  Aligned_cols=55  Identities=24%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-------CccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .+++++|.+|+|||||+|.+.+.....       ...+..|.+.........   .  .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~--~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---N--GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---C--CCEEEeCcC
Confidence            478999999999999999999854311       112222332222222211   1  578999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.64  E-value=1e-07  Score=76.35  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCCc----cCC--cceeEEEEEeeeecCCceEEEEEEecCCCc--------ccccch
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEEY----HPT--QGVRIVECEHSYALDTSKTEIELWDTSGDH--------KFESVW   70 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~   70 (135)
                      .+|+|++|+||||++... +..++-..    ..+  ++.+.   .+...   ..-.--++|++|.-        .....|
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~---~c~ww---f~~~avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR---NCDWW---FTDEAVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc---ccceE---ecCCEEEEcCCCccccCCCcccccHHHH
Confidence            479999999999999987 44443211    111  11110   01000   11134588999822        223345


Q ss_pred             HHhhc---------cCcEEEEEEeCCCcch---------HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         71 PAFQR---------DVHGIIFVFNSGVPGH---------ISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        71 ~~~~~---------~~~~~i~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ..++.         ..+|+|+++|+.+--.         -..++..+.++...-+. ..||.|+.+|||
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~-~~PVYvv~Tk~D  254 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA-RFPVYLVLTKAD  254 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecch
Confidence            55542         5899999999864321         13556677777666553 899999999999

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1144|consensus

Probab=98.63  E-value=1.9e-07  Score=70.39  Aligned_cols=110  Identities=18%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeee-------ecCC---ceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSY-------ALDT---SKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~-------~~~~---~~~~~~i~d~~g~~~~~~~   69 (135)
                      =++|+|.-.+|||-|+..+.+.......    ...+|-+|+....-.       ....   ..--+.+.||||++.|..+
T Consensus       477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl  556 (1064)
T KOG1144|consen  477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL  556 (1064)
T ss_pred             eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence            3789999999999999999875443222    222344444433111       0111   1123678999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +......|+.+|+|+|+..   +++.+.+.-+     +.   .+.|++|+.||+|
T Consensus       557 RsrgsslC~~aIlvvdImhGlepqtiESi~lL-----R~---rktpFivALNKiD  603 (1064)
T KOG1144|consen  557 RSRGSSLCDLAILVVDIMHGLEPQTIESINLL-----RM---RKTPFIVALNKID  603 (1064)
T ss_pred             hhccccccceEEEEeehhccCCcchhHHHHHH-----Hh---cCCCeEEeehhhh
Confidence            9999999999999999864   3444433322     11   2789999999999

>TIGR00092 GTP-binding protein YchF

Probab=98.61  E-value=4.4e-07  Score=64.12  Aligned_cols=88  Identities=23%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCC-CC-CccCC-cceeEEEEEeee-----------ecCCceEEEEEEecCCCccc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTT-AE-EYHPT-QGVRIVECEHSY-----------ALDTSKTEIELWDTSGDHKF   66 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~-~~-~~~~t-~~~~~~~~~~~~-----------~~~~~~~~~~i~d~~g~~~~   66 (135)
                      |.+++.++|.|++|||||++.+++... .. .|..+ +..+......+-           ........+.+.|.||.-.-
T Consensus         1 m~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         1 MGLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             CCceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            568999999999999999999998765 32 22222 222221222111           11113346789999995321


Q ss_pred             ----cc---chHHhhccCcEEEEEEeCCC
Q psy10117         67 ----ES---VWPAFQRDVHGIIFVFNSGV   88 (135)
Q Consensus        67 ----~~---~~~~~~~~~~~~i~v~d~~~   88 (135)
                          ..   ..-..++++|+++.|+++.+
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                22   22334679999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.8e-07  Score=64.58  Aligned_cols=87  Identities=30%  Similarity=0.287  Sum_probs=57.8

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeee-------e--cCCceEEEEEEecCCC--
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSY-------A--LDTSKTEIELWDTSGD--   63 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~-------~--~~~~~~~~~i~d~~g~--   63 (135)
                      |.+++-++|.|+||||||++.++.....      .+..|..|..+..- .+.       .  .......+++.|.+|.  
T Consensus         1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            5689999999999999999999986532      22344455433222 111       1  1123466889998873  


Q ss_pred             --cccccchHHh---hccCcEEEEEEeCCC
Q psy10117         64 --HKFESVWPAF---QRDVHGIIFVFNSGV   88 (135)
Q Consensus        64 --~~~~~~~~~~---~~~~~~~i~v~d~~~   88 (135)
                        ..-+.+-..|   ++++|+++.|+|+..
T Consensus        80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          80 GASKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             CcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              3344444555   468999999999873

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.57  E-value=7.3e-07  Score=63.94  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=64.4

Q ss_pred             cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----------chHHHHHHHHHH
Q psy10117         32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----------GHISELLLFYDY  101 (135)
Q Consensus        32 ~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~  101 (135)
                      .+|.|+....+...     ....+.++|++|+..-+..|..+|.++++++||+++++-          ..+.+....++.
T Consensus       220 ~~T~Gi~e~~f~~~-----~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~  294 (389)
T PF00503_consen  220 VKTTGITEIDFNFS-----GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFES  294 (389)
T ss_dssp             ---SSEEEEEEEE------TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHH
T ss_pred             CCCCCeeEEEEEee-----cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHH
Confidence            46667665555542     567899999999998889999999999999999998642          225555667777


Q ss_pred             HHhccCCCCceEEEEEecCC
Q psy10117        102 FVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus       102 i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +.+.....+.|++|+.||.|
T Consensus       295 i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  295 ICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             HHTSGGGTTSEEEEEEE-HH
T ss_pred             HHhCcccccCceEEeeecHH
Confidence            77777777999999999999

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.57  E-value=2e-07  Score=65.10  Aligned_cols=56  Identities=27%  Similarity=0.182  Sum_probs=38.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      ..++.++|-|+|||||+||+|.+.... ..++..|.+-....+....     .+.++||||-
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~-----~i~LlDtPGi  187 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD-----GIYLLDTPGI  187 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC-----CeEEecCCCc
Confidence            368999999999999999999997653 2223334433333333222     4899999993

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.53  E-value=1.5e-06  Score=57.87  Aligned_cols=84  Identities=19%  Similarity=0.205  Sum_probs=50.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC--CCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc------chHH
Q psy10117          4 KILILGPIMAGKTVLANALCDL--TTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES------VWPA   72 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~--~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~   72 (135)
                      -|.|+|++++|||+|+|.+.+.  .+.   .....|.|+-.......   .+....+-+.||+|......      ..-.
T Consensus         9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~---~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK---LGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc---CCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            3779999999999999999998  443   12334455433222221   12356899999999543321      1112


Q ss_pred             hhcc--CcEEEEEEeCCCcc
Q psy10117         73 FQRD--VHGIIFVFNSGVPG   90 (135)
Q Consensus        73 ~~~~--~~~~i~v~d~~~~~   90 (135)
                      .+..  ++.+|+..+.....
T Consensus        86 ~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          86 ALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHhCEEEEeccCcccH
Confidence            2233  67777766655433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.52  E-value=3.9e-07  Score=57.20  Aligned_cols=53  Identities=26%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .+++++|.+++||||++|.+.+.... ....+.....  .....     ....+.+.||||
T Consensus       101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~-----~~~~~~liDtPG  154 (155)
T cd01849         101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVK-----LDNKIKLLDTPG  154 (155)
T ss_pred             cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEE-----ecCCEEEEECCC
Confidence            47899999999999999999986532 1111111111  11111     113588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1490|consensus

Probab=98.50  E-value=2.6e-07  Score=66.90  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC-ccCCc-ceeEEEEEeeeecCCceEEEEEEecCCCccc----ccchHH-----
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE-YHPTQ-GVRIVECEHSYALDTSKTEIELWDTSGDHKF----ESVWPA-----   72 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~-~~~t~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~-----   72 (135)
                      .++++|-|+||||||++.++....... |..|. +.-...      .+-.-...++.||||--..    +...+.     
T Consensus       170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH------~dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH------LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh------hhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            478999999999999998887654322 22221 110001      1114457789999993211    111111     


Q ss_pred             hhccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         73 FQRDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ..+--.+++|+.|++..=  |.+.=...+..|.  +...+.|+++|.||+|
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D  292 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKID  292 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeeccc
Confidence            112235788889987532  3322233333432  1234889999999999

>KOG1486|consensus

Probab=98.50  E-value=2.8e-06  Score=56.97  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCcc------cc-cchHHhh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDHK------FE-SVWPAFQ   74 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~------~~-~~~~~~~   74 (135)
                      .+++++|-|.+|||||+..+.....     ...+..|++.+.-+ -..-+...+++.|.||--.      -+ ...-...
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~S-----eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHS-----EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchh-----hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence            4899999999999999999887433     22233333333333 1112556899999998321      11 1122234


Q ss_pred             ccCcEEEEEEeCCCcchHHHH-HHHHHHH
Q psy10117         75 RDVHGIIFVFNSGVPGHISEL-LLFYDYF  102 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~-~~~~~~i  102 (135)
                      +-||.+++|.|.+..+--.++ +.-++.+
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            679999999999876654433 3444443

>KOG0410|consensus

Probab=98.45  E-value=6.3e-07  Score=61.87  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCC--CcccccchHHh------h
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSG--DHKFESVWPAF------Q   74 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~~~------~   74 (135)
                      |.++|..++|||||++.|......+  ..-.|.+.+......+     ..-.+-+.||-|  ++....+...|      .
T Consensus       181 iavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-----sg~~vlltDTvGFisdLP~~LvaAF~ATLeeV  255 (410)
T KOG0410|consen  181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-----SGNFVLLTDTVGFISDLPIQLVAAFQATLEEV  255 (410)
T ss_pred             EEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-----CCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence            7899999999999999999543322  2223333332222222     444677889988  22222222222      3


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce----EEEEEecCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK----CLLIDNVKP  121 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----~ivv~nK~D  121 (135)
                      ..+|.++-|.|+++|..-.+....+.-+ +.-+.++.|    ++=|-||.|
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD  305 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKID  305 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccc
Confidence            4799999999999997654444444333 223333344    455677777

>KOG2486|consensus

Probab=98.45  E-value=6.9e-07  Score=60.40  Aligned_cols=107  Identities=12%  Similarity=0.127  Sum_probs=63.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccC-CcceeEEEEEeeeecCCceEEEEEEecCC----------CcccccchH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHP-TQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~   71 (135)
                      .+++++|.+++|||||++.+........... ..|.+   ..+..  -...-+..+.|.||          .+.+..+.+
T Consensus       137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~--f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINH--FHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             ceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeee--eeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence            5789999999999999999997655432222 33321   11111  01233778899999          224444556


Q ss_pred             HhhccCcE---EEEEEeCCCc-chHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         72 AFQRDVHG---IIFVFNSGVP-GHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        72 ~~~~~~~~---~i~v~d~~~~-~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .|+.+-+-   +.+..|.+.+ ...+.. ..|+.+       .++|..+|.||||
T Consensus       212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~D  259 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCD  259 (320)
T ss_pred             HHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhh
Confidence            66654333   3344444322 112222 345444       3799999999999

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.43  E-value=1.9e-06  Score=60.13  Aligned_cols=113  Identities=17%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-----------------------------------CccCCcceeEEEEEeeee
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-----------------------------------EYHPTQGVRIVECEHSYA   47 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-----------------------------------~~~~t~~~~~~~~~~~~~   47 (135)
                      +|++-+|.-.-||||||-+|+.....-                                   +..-|+.+.|.      +
T Consensus         7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR------y   80 (431)
T COG2895           7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR------Y   80 (431)
T ss_pred             eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee------e
Confidence            688999999999999999998653320                                   01111222222      2


Q ss_pred             cCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHH--HHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117         48 LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL--LFYDYFVTQSDLNNHKCLLIDNVKPGRGD  125 (135)
Q Consensus        48 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~D~~~~  125 (135)
                      ....+.++-|-||||++.|-..+..=.+-||++|+++|.... -.++.+  .++..++     .=..++++.||+|.-.-
T Consensus        81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy  154 (431)
T COG2895          81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDY  154 (431)
T ss_pred             cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHh-----CCcEEEEEEeeeccccc
Confidence            223677899999999999876666666789999999998432 223332  2333332     23579999999995333


Q ss_pred             cc
Q psy10117        126 SS  127 (135)
Q Consensus       126 ~~  127 (135)
                      +.
T Consensus       155 ~e  156 (431)
T COG2895         155 SE  156 (431)
T ss_pred             CH
Confidence            33

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.43  E-value=2.4e-07  Score=58.37  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -++++|++|||||||+|.|....
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            36899999999999999999874

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG4273|consensus

Probab=98.41  E-value=1.1e-06  Score=58.77  Aligned_cols=113  Identities=14%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             EEEEECCCCC--ChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          4 KILILGPIMA--GKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         4 ki~viG~~~~--GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+++.|-+|+  ||.+|+.++....+.....+.-...++.+++....-...+.+-|.-.. .+.+-. .........+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-CcccccceeeEE
Confidence            4789999999  999999999988877665555555666665543211122233222211 122211 122234567999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++||++..+.+..++.|+.-..-..   ---++.+|||.|
T Consensus        84 mvfdlse~s~l~alqdwl~htdins---fdillcignkvd  120 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVD  120 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc---chhheecccccc
Confidence            9999999999999999986432111   124567799998

>PRK12288 GTPase RsgA; Reviewed

Probab=98.39  E-value=1.1e-06  Score=61.94  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++++|.+|||||||+|+|.+...
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~  230 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAE  230 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccc
Confidence            68999999999999999998644

>KOG0085|consensus

Probab=98.36  E-value=2.4e-07  Score=61.25  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=56.8

Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV----------PGHISELLLFYDYFVTQSDLNNHKCLLIDNVK  120 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  120 (135)
                      ..+.+.+.|.+|+..-+..|-++|.+...++|...++.          ....++....+..|..++=..+.+++++.||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            56788899999998888889999999988888776643          23355556667777777766789999999999


Q ss_pred             C
Q psy10117        121 P  121 (135)
Q Consensus       121 D  121 (135)
                      |
T Consensus       277 D  277 (359)
T KOG0085|consen  277 D  277 (359)
T ss_pred             h
Confidence            9

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.35  E-value=5.2e-07  Score=54.01  Aligned_cols=96  Identities=23%  Similarity=0.228  Sum_probs=60.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch----HHhhccCcE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW----PAFQRDVHG   79 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~   79 (135)
                      |++++|+.|+|||||.+.+.+...  -+..|..+.+..             =-..|+||.---...+    -....+++.
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------------~~~IDTPGEy~~~~~~Y~aL~tt~~dadv   67 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------------KGDIDTPGEYFEHPRWYHALITTLQDADV   67 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------------ccccCCchhhhhhhHHHHHHHHHhhccce
Confidence            799999999999999999988543  234444432211             1256888832111122    223468999


Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|-.++++++-  ...-+..      ....|+|=|.+|.|.
T Consensus        68 i~~v~~and~~s~--f~p~f~~------~~~k~vIgvVTK~DL  102 (148)
T COG4917          68 IIYVHAANDPESR--FPPGFLD------IGVKKVIGVVTKADL  102 (148)
T ss_pred             eeeeecccCcccc--CCccccc------ccccceEEEEecccc
Confidence            9999999998652  0111111      124568888899985

>KOG1491|consensus

Probab=98.33  E-value=4.2e-06  Score=58.17  Aligned_cols=87  Identities=22%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeee---------e--cCCceEEEEEEecCCCc----
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSY---------A--LDTSKTEIELWDTSGDH----   64 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~---------~--~~~~~~~~~i~d~~g~~----   64 (135)
                      .+++-++|-|+||||||+|.+........  +-.|+..+........         +  .......++++|+.|.-    
T Consensus        20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            46899999999999999999998766533  1223333332222221         1  22345678999988743    


Q ss_pred             ccccchHHh---hccCcEEEEEEeCCC
Q psy10117         65 KFESVWPAF---QRDVHGIIFVFNSGV   88 (135)
Q Consensus        65 ~~~~~~~~~---~~~~~~~i~v~d~~~   88 (135)
                      .-+.+-..|   ++.+|+++-|+++..
T Consensus       100 ~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen  100 AGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cCcCchHHHHHhhhhccceeEEEEecC
Confidence            333444444   468999999998753

>KOG0461|consensus

Probab=98.31  E-value=5.4e-06  Score=57.97  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=66.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-------CCccC--CcceeEEEEEeee---ecCCceEEEEEEecCCCcccccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-------EEYHP--TQGVRIVECEHSY---ALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-------~~~~~--t~~~~~~~~~~~~---~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      ++++-++|.-.||||+|.+++..-...       .....  |.+.-+..+....   -..++...+.+.|+||+...   
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL---   83 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL---   83 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH---
Confidence            579999999999999999999864322       11111  1111122222222   23456788899999996543   


Q ss_pred             hHHhhc---cCcEEEEEEeCCCcchHHHHHHH-HHHHHhccCCCCceEEEEEecCC
Q psy10117         70 WPAFQR---DVHGIIFVFNSGVPGHISELLLF-YDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        70 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ....+.   -.|..++|+|+.....-...+-. +-++      --...++|.||+|
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid  133 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKID  133 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccc
Confidence            333333   35778999998765433333222 2222      1246778889988

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.30  E-value=1.9e-06  Score=61.18  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      +++++|.+|||||||+|++.+..
T Consensus       156 ~v~~vG~~nvGKStliN~l~~~~  178 (360)
T TIGR03597       156 DVYVVGVTNVGKSSLINKLLKQN  178 (360)
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            79999999999999999999853

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.30  E-value=1.7e-06  Score=61.58  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++.++|.+|||||||+|+|...
T Consensus       162 ~v~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        162 DVYVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             eEEEEcCCCCcHHHHHHHHHhh
Confidence            6899999999999999999864

>PRK12289 GTPase RsgA; Reviewed

Probab=98.30  E-value=1.8e-06  Score=61.01  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++|+|++|||||||+|.|.+...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~  197 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVE  197 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccc
Confidence            68999999999999999997643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.29  E-value=7.6e-06  Score=56.81  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .+.+-|.||+|.-...   ......+|.++++-.   +.+-+++......+      ...|.++|.||+|..
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l------~~~~~ivv~NK~Dl~  185 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGL------MEIADIYVVNKADGE  185 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHH------hhhccEEEEEccccc
Confidence            5778899998843221   234567788887743   33445555544433      256789999999953

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.28  E-value=2.5e-06  Score=57.50  Aligned_cols=24  Identities=29%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|||||||+|++.+...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~  145 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVK  145 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhh
Confidence            578999999999999999998643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.27  E-value=3.1e-06  Score=58.39  Aligned_cols=25  Identities=28%  Similarity=0.294  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||+|.+.+....
T Consensus       163 ~~~~~G~sg~GKSTlin~l~~~~~~  187 (287)
T cd01854         163 TSVLVGQSGVGKSTLINALLPDLDL  187 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHhchhhc
Confidence            5889999999999999999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0464|consensus

Probab=98.25  E-value=4.5e-07  Score=64.66  Aligned_cols=112  Identities=23%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC----CC------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA----EE------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~----~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|-++..-.+||||.-.+++.-.-.    +.            .....|++..+-.  +..++....+++.||||+-.|+
T Consensus        39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaa--v~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAA--VNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeee--eecccccceEeeecCCCcceEE
Confidence            5778888999999999888742110    00            1222344332222  2455678899999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      -..+.+++--|+++.|||.+-.-.-..+..|-     +...-++|-..+.||+|.
T Consensus       117 leverclrvldgavav~dasagve~qtltvwr-----qadk~~ip~~~finkmdk  166 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWR-----QADKFKIPAHCFINKMDK  166 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeeh-----hccccCCchhhhhhhhhh
Confidence            99999999999999999998654444556663     333458999999999993

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.22  E-value=2.5e-06  Score=56.52  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=20.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++|+||+|||||||++.+.+-..
T Consensus        34 vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcccC
Confidence            68999999999999999988655

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=1.1e-05  Score=55.22  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   68 (135)
                      +||..+|.-.-|||||...+..-...              .......|+++..-...+..  ........|+||+..|-.
T Consensus        13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet--~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET--ANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec--CCceEEeccCCChHHHHH
Confidence            68999999999999999887742110              01223344444333333322  455778899999887754


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..-.-..+.|+.|+|+..++..--....+ +-.. ++.+  -.-++++.||+|.
T Consensus        91 NMItgAaqmDgAILVVsA~dGpmPqTrEH-iLla-rqvG--vp~ivvflnK~Dm  140 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPMPQTREH-ILLA-RQVG--VPYIVVFLNKVDM  140 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhh-hhcC--CcEEEEEEecccc
Confidence            43333456799999999988643222222 1111 1222  3468889999995

>KOG3859|consensus

Probab=98.19  E-value=6.4e-06  Score=56.02  Aligned_cols=60  Identities=20%  Similarity=0.278  Sum_probs=43.9

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC----ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE----YHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      |.++|+-+|+.|.|||||+..|.+..+...    ..|++...  ..+......+..++++|.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~--~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQ--ANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceee--cchhhhhhcCeeEEEEEEeecc
Confidence            568999999999999999999998776533    23333332  3333334556788999999988

>PRK00098 GTPase RsgA; Reviewed

Probab=98.17  E-value=5.3e-06  Score=57.53  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||+|.|.+...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcC
Confidence            478999999999999999998654

>KOG0467|consensus

Probab=98.15  E-value=1.5e-05  Score=60.43  Aligned_cols=107  Identities=22%  Similarity=0.234  Sum_probs=75.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV   69 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   69 (135)
                      +++++..-.-|||||...|....-.              .+.+.+.|+++..-.+.  .-...+.+++.|+||+-.|.+.
T Consensus        11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is--~~~~~~~~nlidspghvdf~se   88 (887)
T KOG0467|consen   11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS--LLHKDYLINLIDSPGHVDFSSE   88 (887)
T ss_pred             EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc--cccCceEEEEecCCCccchhhh
Confidence            6889999999999999988743211              11234445544332222  2236678999999999999999


Q ss_pred             hHHhhccCcEEEEEEeCCCcc---hHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPG---HISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .....+-+|++++.+|+...-   +..-+ +.|++         ....++|.||+|
T Consensus        89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~---------~~~~~lvinkid  135 (887)
T KOG0467|consen   89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE---------GLKPILVINKID  135 (887)
T ss_pred             hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc---------cCceEEEEehhh
Confidence            999999999999999986542   22222 22432         457788999999

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.15  E-value=3e-05  Score=54.43  Aligned_cols=59  Identities=20%  Similarity=0.138  Sum_probs=36.1

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+.|.||+|.....   ......+|.++++.+....   +.++.....+.      ...-++|.||.|.
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~g---d~iq~~k~gi~------E~aDIiVVNKaDl  206 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAG---DELQGIKKGIM------ELADLIVINKADG  206 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCch---HHHHHHHhhhh------hhhheEEeehhcc
Confidence            4678899999965322   2246679999999663333   33333222221      2234899999994

>KOG1532|consensus

Probab=98.12  E-value=3.5e-05  Score=52.44  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|+++|=.||||||++.+|...
T Consensus        20 ~~ilVvGMAGSGKTTF~QrL~~h   42 (366)
T KOG1532|consen   20 VIILVVGMAGSGKTTFMQRLNSH   42 (366)
T ss_pred             cEEEEEecCCCCchhHHHHHHHH
Confidence            45899999999999999998743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.08  E-value=4.3e-06  Score=55.82  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=21.5

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|||||||++.+.+-..+
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC
Confidence            689999999999999999987654

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.07  E-value=4.4e-05  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      +++.|+.|+|||||++++....
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhcc
Confidence            5799999999999999988753

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.05  E-value=5.4e-06  Score=54.39  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=22.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++||+|||||||++.+-+.+.+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~   54 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEP   54 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCC
Confidence            4789999999999999999987665

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.04  E-value=2.8e-05  Score=54.39  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++|+||||++..+...
T Consensus       116 vi~lvGpnGsGKTTt~~kLA~~  137 (318)
T PRK10416        116 VILVVGVNGVGKTTTIGKLAHK  137 (318)
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999988753

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.04  E-value=4.1e-05  Score=55.46  Aligned_cols=112  Identities=19%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC------CCC----CCc-----------cCCcceeEEEEEeeee-----------cCCc
Q psy10117          4 KILILGPIMAGKTVLANALCDL------TTA----EEY-----------HPTQGVRIVECEHSYA-----------LDTS   51 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~------~~~----~~~-----------~~t~~~~~~~~~~~~~-----------~~~~   51 (135)
                      -|+++|++||||||++..|...      +..    +.+           ....++.++.......           ....
T Consensus       102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~  181 (429)
T TIGR01425       102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE  181 (429)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC
Confidence            4789999999999999988721      100    111           1112222222111000           0012


Q ss_pred             eEEEEEEecCCCcccccc----hHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESV----WPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+.+-|.||+|.......    ...+.  .+.+-+++|.|......-   ....+.+...    -.+--++.||.|+
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~  251 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDG  251 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccC
Confidence            568899999996533221    11121  246789999998654322   2222333211    2366777999994

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK08118 topology modulation protein; Reviewed

Probab=98.02  E-value=5.2e-06  Score=52.85  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .||+|+|++|||||||.+.+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999999865

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.02  E-value=7e-05  Score=45.62  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -+++.|++|+|||++++.+.....
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhh
Confidence            478999999999999999998643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.02  E-value=6.6e-06  Score=43.49  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=19.7

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+|.|++|+||||++..+..--+
T Consensus        26 tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            78999999999999998875433

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.02  E-value=9.3e-06  Score=55.81  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      .+++|++|||||||+|+|....
T Consensus       167 svl~GqSGVGKSSLiN~L~p~~  188 (301)
T COG1162         167 TVLLGQSGVGKSTLINALLPEL  188 (301)
T ss_pred             EEEECCCCCcHHHHHHhhCchh
Confidence            5799999999999999999743

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.00  E-value=5.3e-06  Score=53.31  Aligned_cols=23  Identities=52%  Similarity=0.764  Sum_probs=21.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +||+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999986

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.00  E-value=6e-06  Score=49.46  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

...

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.99  E-value=7.4e-06  Score=57.40  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=21.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++||+|||||||++.+.+...+
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~~   55 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEEP   55 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC
Confidence            689999999999999999997764

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=6.3e-05  Score=53.63  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++|+||||++..|...
T Consensus       139 ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        139 VFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998753

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.98  E-value=6.6e-05  Score=46.30  Aligned_cols=106  Identities=16%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             EEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEe
Q psy10117          6 LILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN   85 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (135)
                      +.-|..|+|||++-..+...-...      |.+.--...........+.+.+.|+|+...  ......+..+|.++++.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~------~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~   75 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKL------GKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT   75 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence            456789999999987666532210      111111111111111226788999987432  334567889999999998


Q ss_pred             CCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         86 SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        86 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+ ..++..+...++.+....  ...++.+|.|+.+.
T Consensus        76 ~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          76 PE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             CC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            75 344555555555554332  25678899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0448|consensus

Probab=97.97  E-value=6.8e-05  Score=56.47  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             EEEEEecCCCc---ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117         54 EIELWDTSGDH---KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGD  125 (135)
Q Consensus        54 ~~~i~d~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~  125 (135)
                      .+.+.|.||..   ...+-...+..++|.+|||.+.-+..+..+ .+++....+.    ...+.++.||-|....
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~----KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE----KPNIFILNNKWDASAS  276 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc----CCcEEEEechhhhhcc
Confidence            45677888844   444455667789999999998866544322 4444444332    4566777777785443

>KOG1424|consensus

Probab=97.97  E-value=1.2e-05  Score=58.58  Aligned_cols=56  Identities=20%  Similarity=0.119  Sum_probs=38.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      +-|-++|-|+|||||+||.|.+.+.. ....|.|-+-+-.++.+     .-.+.++|+||.-
T Consensus       315 vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l-----s~~v~LCDCPGLV  370 (562)
T KOG1424|consen  315 VTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL-----SPSVCLCDCPGLV  370 (562)
T ss_pred             eEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc-----CCCceecCCCCcc
Confidence            56889999999999999999997653 23344444332222221     2267899999943

>PRK14531 adenylate kinase; Provisional

Probab=97.97  E-value=7.9e-06  Score=52.71  Aligned_cols=25  Identities=48%  Similarity=0.709  Sum_probs=22.6

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      |+.+|+++|+|||||||+...+...
T Consensus         1 ~~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          1 MKQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999988754

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.95  E-value=7.9e-05  Score=47.49  Aligned_cols=64  Identities=11%  Similarity=0.098  Sum_probs=36.8

Q ss_pred             eEEEEEEecCCCccccc----chHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFES----VWPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+-+.|++|......    ....+.  ...+.+++|+|.....   ....+...+.+..+    ..-++.||.|.
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~----~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG----ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC----CCEEEEECCcC
Confidence            45678899999643211    111111  2489999999986443   23344444433322    35666799994

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.95  E-value=3.9e-05  Score=52.60  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=18.1

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -++++|++|+||||.+..+..
T Consensus        74 vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        74 VILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            477899999999999987764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK07261 topology modulation protein; Provisional

Probab=97.95  E-value=8.3e-06  Score=52.09  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .||+|+|++|||||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998764

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=9.3e-05  Score=53.16  Aligned_cols=109  Identities=18%  Similarity=0.046  Sum_probs=70.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC---CC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCc
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA---EE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVH   78 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~---~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   78 (135)
                      -|...|.-.-|||||+..+.+..-.   ..  -.-|+...++.+..      ....+.+.|.||++++-...-.-....|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~------~d~~~~fIDvpgh~~~i~~miag~~~~d   75 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL------EDGVMGFIDVPGHPDFISNLLAGLGGID   75 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC------CCCceEEeeCCCcHHHHHHHHhhhcCCc
Confidence            4677899999999999999986433   11  22233333332222      3348899999999988766666667899


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+++|++.++.-.....+ .+..+ ..  +.....++|.+|+|.
T Consensus        76 ~alLvV~~deGl~~qtgE-hL~iL-dl--lgi~~giivltk~D~  115 (447)
T COG3276          76 YALLVVAADEGLMAQTGE-HLLIL-DL--LGIKNGIIVLTKADR  115 (447)
T ss_pred             eEEEEEeCccCcchhhHH-HHHHH-Hh--cCCCceEEEEecccc
Confidence            999999996543322222 22222 11  124566999999994

>KOG0447|consensus

Probab=97.92  E-value=0.0002  Score=53.24  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=45.0

Q ss_pred             eEEEEEEecCCC-------------cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117         52 KTEIELWDTSGD-------------HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN  118 (135)
Q Consensus        52 ~~~~~i~d~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  118 (135)
                      ...+.+.|.||-             +....+...|.++.++||+|+--.   |.+.-+.....+.......+...|+|.+
T Consensus       411 LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLT  487 (980)
T KOG0447|consen  411 LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLT  487 (980)
T ss_pred             cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEe
Confidence            345678899982             122346677889999999998532   2333344444554555556788999999


Q ss_pred             cCC
Q psy10117        119 VKP  121 (135)
Q Consensus       119 K~D  121 (135)
                      |.|
T Consensus       488 KVD  490 (980)
T KOG0447|consen  488 KVD  490 (980)
T ss_pred             ecc
Confidence            999

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=3.2e-05  Score=61.80  Aligned_cols=110  Identities=18%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC-CCc---cCCcceeEEEEEeeeecCCceEEEEEEecCCC--------cccccchHH
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA-EEY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGD--------HKFESVWPA   72 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~   72 (135)
                      .+|+|++|+||||++..--- .++ ...   ....+..  +..+.   ....-.--+.||.|.        +..+..|..
T Consensus       128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g--T~~cd---wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG--TRNCD---WWFTDEAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC--CcccC---cccccceEEEcCCcceecccCcchhhHHHHHH
Confidence            37999999999999875433 332 110   0000100  11111   112334567788772        233445665


Q ss_pred             h---------hccCcEEEEEEeCCCcch---------HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         73 F---------QRDVHGIIFVFNSGVPGH---------ISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        73 ~---------~~~~~~~i~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +         .+..+|||+..|+.+--+         ...++.-++++...-. -..||.|+.||.|
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~D  267 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKAD  267 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccc
Confidence            5         236899999999864322         1223455666654433 3789999999999

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.91  E-value=9.2e-06  Score=50.00  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=19.0

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+++|++||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999853

...

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.91  E-value=1.1e-05  Score=49.41  Aligned_cols=24  Identities=38%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            578999999999999999998654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.90  E-value=1e-05  Score=55.67  Aligned_cols=115  Identities=12%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcc-eeEEEEEeeeecCCceEEEEEEec---CC-----CcccccchHHhh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQG-VRIVECEHSYALDTSKTEIELWDT---SG-----DHKFESVWPAFQ   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~~i~d~---~g-----~~~~~~~~~~~~   74 (135)
                      +++++|+++.|||+++++|...-.+. ..+... ......+.+...+.......|.+.   |.     ....+......+
T Consensus        63 ~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll  141 (302)
T PF05621_consen   63 NLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL  141 (302)
T ss_pred             ceEEecCCCCcHHHHHHHHHHHCCCC-CCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999754322 111110 011111111111111111111110   11     111122333466


Q ss_pred             ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCceEEEEEec
Q psy10117         75 RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSDLNNHKCLLIDNV  119 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  119 (135)
                      +....=++++|--..   -+..+-+..+..+......-.+|++.||++
T Consensus       142 r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  142 RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence            778888999985422   123333444444444444447999999986

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.89  E-value=1.3e-05  Score=51.86  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .-.++|+|++|||||||++.+....
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            4468999999999999999997754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.87  E-value=1.7e-05  Score=53.69  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++++||+|||||||++.+.+-..
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhccCC
Confidence            57999999999999999998544

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.85  E-value=2.1e-05  Score=50.58  Aligned_cols=25  Identities=40%  Similarity=0.586  Sum_probs=22.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +++|+|++|+|||||+|.+.+-..+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~P   51 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFETP   51 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccCC
Confidence            5789999999999999999986654

>KOG0099|consensus

Probab=97.84  E-value=7.2e-05  Score=50.63  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=56.7

Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc----------hHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----------HISELLLFYDYFVTQSDLNNHKCLLIDNVK  120 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  120 (135)
                      ..++++.+|.+||..-+..|-..|.+..+++||..+++-.          .+.+...+++.+.+.+-+..+.+|++.||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            5678999999999888888999999999999999987422          234444555666666666689999999999


Q ss_pred             C
Q psy10117        121 P  121 (135)
Q Consensus       121 D  121 (135)
                      |
T Consensus       280 D  280 (379)
T KOG0099|consen  280 D  280 (379)
T ss_pred             H
Confidence            9

>PRK14530 adenylate kinase; Provisional

Probab=97.84  E-value=1.6e-05  Score=52.54  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +..+|+|+|++||||||+.+.|...
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999753

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.84  E-value=1.9e-05  Score=55.67  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++||+||||||+++.+.+-..+
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~p   57 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQP   57 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC
Confidence            569999999999999999987664

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.83  E-value=2.3e-05  Score=50.34  Aligned_cols=24  Identities=33%  Similarity=0.342  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            478999999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.82  E-value=1.3e-05  Score=50.65  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=17.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999875

>PF05729 NACHT: NACHT domain

Probab=97.82  E-value=7.9e-05  Score=46.68  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++|.|++|+|||+++..++..-.
T Consensus         3 l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHHH
Confidence            68999999999999999886543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.80  E-value=2e-05  Score=47.64  Aligned_cols=22  Identities=50%  Similarity=0.653  Sum_probs=20.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      |++.|++|+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999999853

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.80  E-value=2.3e-05  Score=50.32  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=18.8

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .++++|++|+|||||++.+..
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            578999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.79  E-value=3e-05  Score=50.78  Aligned_cols=24  Identities=42%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.79  E-value=3e-05  Score=51.23  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCcC
Confidence            478999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.78  E-value=2.6e-05  Score=42.24  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.77  E-value=2.4e-05  Score=46.03  Aligned_cols=20  Identities=45%  Similarity=0.421  Sum_probs=18.3

Q ss_pred             EEEEECCCCCChHHHHHHHh
Q psy10117          4 KILILGPIMAGKTVLANALC   23 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~   23 (135)
                      -++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47899999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.77  E-value=3.4e-05  Score=50.91  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.77  E-value=2.9e-05  Score=46.94  Aligned_cols=26  Identities=46%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -.++++|++|+|||+++..++.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999986543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.76  E-value=3.4e-05  Score=49.98  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.76  E-value=2.6e-05  Score=48.03  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=19.4

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999975

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK06217 hypothetical protein; Validated

Probab=97.76  E-value=2.9e-05  Score=50.04  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+|+|+|.+||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.76  E-value=3.8e-05  Score=50.50  Aligned_cols=24  Identities=38%  Similarity=0.497  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.++|++|+|||||++.+.+...
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.76  E-value=3.7e-05  Score=51.44  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01855 YqeH YqeH

Probab=97.75  E-value=2.9e-05  Score=50.27  Aligned_cols=50  Identities=8%  Similarity=-0.072  Sum_probs=36.7

Q ss_pred             cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         66 FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++.++..++++++++++|+|+++...     .|...+...  ..+.|+++|+||+|.
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl   73 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDL   73 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhc
Confidence            57788889999999999999987542     122233222  136899999999995

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.75  E-value=4e-05  Score=50.78  Aligned_cols=24  Identities=38%  Similarity=0.393  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.75  E-value=4.1e-05  Score=50.34  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.75  E-value=2.5e-05  Score=50.03  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.74  E-value=3.6e-05  Score=50.87  Aligned_cols=24  Identities=42%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        15 ~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         15 HIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            478999999999999999998654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.74  E-value=4.2e-05  Score=50.09  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.++|++|+|||||++.+.+...
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.74  E-value=4.2e-05  Score=50.37  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998644

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.74  E-value=3.4e-05  Score=48.45  Aligned_cols=25  Identities=36%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +.+||.+-|+|||||||++.++...
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~   28 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEK   28 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHH
Confidence            4689999999999999999998853

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.74  E-value=3.6e-05  Score=50.08  Aligned_cols=24  Identities=38%  Similarity=0.657  Sum_probs=21.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|||||||+|.+.+-..+
T Consensus        34 vv~lGpSGcGKTTLLnl~AGf~~P   57 (259)
T COG4525          34 VVVLGPSGCGKTTLLNLIAGFVTP   57 (259)
T ss_pred             EEEEcCCCccHHHHHHHHhcCcCc
Confidence            689999999999999999876544

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.74  E-value=3.9e-05  Score=50.50  Aligned_cols=24  Identities=46%  Similarity=0.512  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998644

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.73  E-value=5.9e-05  Score=47.98  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+++.||+|+|||+|++.++....+
T Consensus        31 ~iaitGPSG~GKStllk~va~Lisp   55 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLISP   55 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccCC
Confidence            4789999999999999999876553

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.73  E-value=4.4e-05  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.73  E-value=4.4e-05  Score=50.29  Aligned_cols=24  Identities=38%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.73  E-value=4.5e-05  Score=50.52  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.73  E-value=4.4e-05  Score=50.94  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00038  Score=52.00  Aligned_cols=106  Identities=10%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +=++++||+|+|||||++.|...........-.|    .++.   ..+....+++..+|. +.. . .-....-+|.+++
T Consensus        70 fIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTv---vsgK~RRiTflEcp~-Dl~-~-miDvaKIaDLVlL  139 (1077)
T COG5192          70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITV---VSGKTRRITFLECPS-DLH-Q-MIDVAKIADLVLL  139 (1077)
T ss_pred             eEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEE---eecceeEEEEEeChH-HHH-H-HHhHHHhhheeEE
Confidence            4577999999999999998876422111111111    1111   123667889999883 211 1 2233456889999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+|..=.-..+.+ +++..+..+ +  =..++-|.+..|.
T Consensus       140 lIdgnfGfEMETm-EFLnil~~H-G--mPrvlgV~ThlDl  175 (1077)
T COG5192         140 LIDGNFGFEMETM-EFLNILISH-G--MPRVLGVVTHLDL  175 (1077)
T ss_pred             EeccccCceehHH-HHHHHHhhc-C--CCceEEEEeeccc
Confidence            9997644333222 333333322 1  1346667888884

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.73  E-value=4e-05  Score=50.70  Aligned_cols=24  Identities=29%  Similarity=0.170  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.73  E-value=4.6e-05  Score=50.22  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.72  E-value=0.00051  Score=38.95  Aligned_cols=97  Identities=16%  Similarity=0.096  Sum_probs=55.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-hHHhhccCcEEEEE
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-WPAFQRDVHGIIFV   83 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v   83 (135)
                      +++.|..|+|||++...+...-..      .+.......          .+-+.|+++....... .......++.++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v   65 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----------DYVLIDTPPGLGLLVLLCLLALLAADLVIIV   65 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----------CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence            678899999999999888874321      111111100          6788998875433221 14556688999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN  118 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  118 (135)
                      .+.... +........++..........+..++.|
T Consensus        66 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          66 TTPEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             cCCchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            886543 3344443333333333333556655544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.72  E-value=4.7e-05  Score=50.45  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998644

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.72  E-value=5.1e-05  Score=48.05  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.72  E-value=4.5e-05  Score=50.51  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999988654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG0066|consensus

Probab=97.72  E-value=0.00056  Score=49.86  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=24.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      |.-+|+|+||+|||||||+..|++...+
T Consensus       612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P  639 (807)
T KOG0066|consen  612 MDSRIAIVGPNGVGKSTLLKLLIGKLDP  639 (807)
T ss_pred             ccceeEEECCCCccHHHHHHHHhcCCCC
Confidence            3458999999999999999999986554

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.72  E-value=3.2e-05  Score=49.57  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -|+++|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999999853

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.72  E-value=4.8e-05  Score=49.49  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999998654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.72  E-value=4.5e-05  Score=51.24  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            478999999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.72  E-value=3.7e-05  Score=51.84  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      +.++||+|+|||||++.+++...
T Consensus        33 ~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          33 TALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            67999999999999999999544

>TIGR00101 ureG urease accessory protein UreG

Probab=97.71  E-value=3.6e-05  Score=50.38  Aligned_cols=24  Identities=42%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|.++|++|+|||||++++.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999988864

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.71  E-value=0.00023  Score=43.61  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -|++.|+.|+|||||++.+....
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK03839 putative kinase; Provisional

Probab=97.71  E-value=3.3e-05  Score=49.59  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +|+++|.+||||||+.+.+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998864

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.71  E-value=4.9e-05  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          33 TLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.71  E-value=4.7e-05  Score=50.94  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          28 IHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC
Confidence            478999999999999999998644

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.71  E-value=2.8e-05  Score=51.13  Aligned_cols=19  Identities=32%  Similarity=0.532  Sum_probs=16.5

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      .+++||+|||||||++.+-
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            4699999999999998665

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.70  E-value=5e-05  Score=50.04  Aligned_cols=24  Identities=38%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.++|++|+|||||++.+.+...
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC
Confidence            478999999999999999998654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.70  E-value=5.1e-05  Score=51.49  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         29 LLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.70  E-value=4.9e-05  Score=47.16  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC
Confidence            367999999999999999998654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.70  E-value=5.1e-05  Score=50.13  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            478999999999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.70  E-value=5.2e-05  Score=50.63  Aligned_cols=24  Identities=29%  Similarity=0.338  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.70  E-value=5.6e-05  Score=49.30  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        28 ALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.69  E-value=3.6e-05  Score=51.61  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+|++|+|++|||||+|+..++..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            479999999999999999888753

This is thought to be an ATPase involved in viral DNA packaging [].

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.69  E-value=9.2e-05  Score=51.14  Aligned_cols=48  Identities=8%  Similarity=-0.011  Sum_probs=40.7

Q ss_pred             HHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+.++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL  121 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADL  121 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHC
Confidence            44578999999999999988 88888889887753    26899999999995

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.69  E-value=5.6e-05  Score=49.76  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999998654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.69  E-value=5.8e-05  Score=49.31  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        29 ~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         29 LLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999998654

>PRK10908 cell division protein FtsE; Provisional

Probab=97.69  E-value=5.8e-05  Score=50.08  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         30 MAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.69  E-value=5e-05  Score=50.56  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=20.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      |+++|++|+|||||++.+-+...
T Consensus        33 VaiIG~SGaGKSTLLR~lngl~d   55 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNGLVD   55 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhcccC
Confidence            78999999999999999988433

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.69  E-value=5.1e-05  Score=49.82  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          28 IYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            468999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.68  E-value=6.1e-05  Score=48.33  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998644

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.68  E-value=5.6e-05  Score=50.52  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        37 ~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         37 MMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998654

>PRK13949 shikimate kinase; Provisional

Probab=97.68  E-value=4.1e-05  Score=48.85  Aligned_cols=22  Identities=41%  Similarity=0.600  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +|+|+|++|+||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988864

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.68  E-value=6.1e-05  Score=48.50  Aligned_cols=24  Identities=38%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.68  E-value=5.1e-05  Score=50.93  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          30 LVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0465|consensus

Probab=97.68  E-value=6.2e-05  Score=56.08  Aligned_cols=111  Identities=20%  Similarity=0.165  Sum_probs=72.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC--CC--C------------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDLT--TA--E------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~--~~--~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      +|-++..-.+||||+-.+++.-.  ..  .            +.....|++...-..  +..+....+++.||||+-.|.
T Consensus        41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt--~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAAT--YFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeecee--eeeeccceeEEecCCCceeEE
Confidence            45566677899999998776321  00  0            011112222211111  233457899999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      -..+..++-.|++|+++|....-.-....-|.+.- +    -+.|.+.+.||+|
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-r----y~vP~i~FiNKmD  167 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-R----YNVPRICFINKMD  167 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-h----cCCCeEEEEehhh
Confidence            99999999999999999976543323334443332 2    2789999999999

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.68  E-value=5.7e-05  Score=51.34  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        40 ~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         40 FVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.68  E-value=6.4e-05  Score=48.32  Aligned_cols=24  Identities=42%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        27 ~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998644

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.68  E-value=5.9e-05  Score=50.52  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        29 FVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            467999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.68  E-value=5.2e-05  Score=50.86  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          29 FVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            478999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.68  E-value=4.4e-05  Score=49.39  Aligned_cols=24  Identities=46%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+||||+++.+++...
T Consensus        27 ~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcC
Confidence            589999999999999999987543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.67  E-value=6.2e-05  Score=50.86  Aligned_cols=25  Identities=36%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++|+|++|+|||||++.+.+...+
T Consensus        27 ~~~i~G~NGsGKSTLlk~L~G~~~p   51 (246)
T cd03237          27 VIGILGPNGIGKTTFIKMLAGVLKP   51 (246)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC
Confidence            4789999999999999999986543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14532 adenylate kinase; Provisional

Probab=97.66  E-value=4.3e-05  Score=49.37  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++|+++|+|||||||+..++...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999853

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.66  E-value=7e-05  Score=47.57  Aligned_cols=24  Identities=42%  Similarity=0.578  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.66  E-value=7.1e-05  Score=47.79  Aligned_cols=24  Identities=38%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.66  E-value=6e-05  Score=49.73  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        25 ~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          25 VTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.66  E-value=6.8e-05  Score=49.27  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         30 ALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999654

>cd01859 MJ1464 MJ1464

Probab=97.66  E-value=5.3e-05  Score=47.45  Aligned_cols=52  Identities=12%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         66 FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++.+..+..+++|.+++|+|.+++..... ..+...+ ..   .+.|+++|.||+|.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~~---~~~p~iiv~NK~Dl   53 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-LE---LGKKLLIVLNKADL   53 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-Hh---CCCcEEEEEEhHHh
Confidence            34567778889999999999987654322 1222212 11   25799999999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.66  E-value=6.5e-05  Score=50.06  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        28 VTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.65  E-value=4.4e-05  Score=49.12  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -|+++|++||||||+++.+..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999983

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.65  E-value=5.3e-05  Score=48.29  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      ||++-|++|+||||++++++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.65  E-value=0.0004  Score=35.98  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=25.8

Q ss_pred             cCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         76 DVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        76 ~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      -.++++|++|.+..-.+  ++=...++++...-  .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            46889999999876543  33344555554432  3899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=6.8e-05  Score=50.35  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         31 IVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.65  E-value=7.2e-05  Score=49.02  Aligned_cols=24  Identities=42%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         29 LVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.65  E-value=6.3e-05  Score=50.08  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        38 ~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         38 TIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999998754

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.65  E-value=7e-05  Score=49.86  Aligned_cols=24  Identities=42%  Similarity=0.574  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          31 TVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCcC
Confidence            378999999999999999998754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.65  E-value=0.00021  Score=45.67  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.|+|++|||||||+--+.+...
T Consensus        38 ~vaiVG~SGSGKSTLl~vlAGLd~   61 (228)
T COG4181          38 TVAIVGPSGSGKSTLLAVLAGLDD   61 (228)
T ss_pred             eEEEEcCCCCcHHhHHHHHhcCCC
Confidence            478999999999999999998765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.64  E-value=7e-05  Score=50.32  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         30 TLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.64  E-value=7.3e-05  Score=49.17  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        26 ~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          26 ITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1143|consensus

Probab=97.64  E-value=0.00017  Score=51.21  Aligned_cols=116  Identities=14%  Similarity=0.101  Sum_probs=68.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC----------------ccCC-------cceeEEEEEeee--------ecC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE----------------YHPT-------QGVRIVECEHSY--------ALD   49 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~----------------~~~t-------~~~~~~~~~~~~--------~~~   49 (135)
                      ++++++++|...+|||||+--|..+.....                ...|       .|++-......+        -.+
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            368999999999999999988776654321                1111       121111111111        122


Q ss_pred             CceEEEEEEecCCCcccccchHHhhc--cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         50 TSKTEIELWDTSGDHKFESVWPAFQR--DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        50 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ...--+++.|..|+.+|....-.-+.  ..|.++++++....-.+. .++.+-.+..    -++|++++.+|.|
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~D  314 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMD  314 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeec
Confidence            23345789999999888643333222  357778888876543321 2333333321    2899999999999

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.64  E-value=6.3e-05  Score=50.05  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         35 FKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            478999999999999999998643

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.64  E-value=7.1e-05  Score=50.63  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        31 VLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.64  E-value=7.5e-05  Score=48.83  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.++|++|+|||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          28 ALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998654

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.64  E-value=7.8e-05  Score=47.82  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            478999999999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.64  E-value=7e-05  Score=51.27  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         35 IAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.63  E-value=5.3e-05  Score=50.41  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.63  E-value=5.2e-05  Score=46.54  Aligned_cols=23  Identities=43%  Similarity=0.663  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999888753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.63  E-value=4.4e-05  Score=49.02  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      =+++.||+|+||||+++.|....
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            37899999999999999999765

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.63  E-value=4.9e-05  Score=45.72  Aligned_cols=21  Identities=38%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988875

...

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.63  E-value=7.5e-05  Score=49.31  Aligned_cols=24  Identities=38%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        39 ~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         39 ALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.0004  Score=51.65  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|+|+|++|+||||++..|..
T Consensus       352 vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        352 VIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999988875

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.63  E-value=7.2e-05  Score=51.17  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         29 VTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC
Confidence            478999999999999999998654

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.63  E-value=8.1e-05  Score=47.54  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccC
Confidence            478999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.63  E-value=5.6e-05  Score=50.76  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++|+|||||++.+.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        28 IHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.62  E-value=8e-05  Score=49.75  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        13 ~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184        13 FISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.62  E-value=0.0002  Score=50.83  Aligned_cols=49  Identities=16%  Similarity=0.023  Sum_probs=38.4

Q ss_pred             hHHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....+.++|.+++|+|+.++. ....+..|+..+..    .++|+++|+||+|.
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DL  132 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADL  132 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhc
Confidence            344578999999999998876 45567888876632    36899999999995

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.62  E-value=5.2e-05  Score=49.86  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|+|++|||||||++.|...
T Consensus        15 ~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         15 LVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             EEEEECcCCCCHHHHHHHHHhc
Confidence            4789999999999999999754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.61  E-value=8.2e-05  Score=50.19  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         31 VVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.61  E-value=6.5e-05  Score=50.15  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        14 ~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        14 VLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999999754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK02496 adk adenylate kinase; Provisional

Probab=97.61  E-value=6.7e-05  Score=48.34  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|++++|++||||||+.+.+...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998753

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.61  E-value=8.1e-05  Score=50.42  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        32 ~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         32 ILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998644

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.61  E-value=7.2e-05  Score=51.84  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|+|||||++.+++...+
T Consensus        34 ~gllG~NGAGKTTllk~l~gl~~p   57 (293)
T COG1131          34 FGLLGPNGAGKTTLLKILAGLLKP   57 (293)
T ss_pred             EEEECCCCCCHHHHHHHHhCCcCC
Confidence            679999999999999999997654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00025  Score=49.43  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeE----------------EEEEeeeecC------CceEEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRI----------------VECEHSYALD------TSKTEIE   56 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~----------------~~~~~~~~~~------~~~~~~~   56 (135)
                      .++|-.+|.-.-|||||...|++-...   .+....+.+..                ..+......+      .....+.
T Consensus        10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS   89 (415)
T COG5257          10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS   89 (415)
T ss_pred             ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence            478999999999999999999863221   11111111100                0111111111      2345688


Q ss_pred             EEecCCCcccccchHHhhcc---CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         57 LWDTSGDHKFESVWPAFQRD---VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        57 i~d~~g~~~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +.|.||++...   ...++.   -|++++|+..+.+-.--+.++.+..+.-.   .-..++++-||.|
T Consensus        90 fVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKID  151 (415)
T COG5257          90 FVDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKID  151 (415)
T ss_pred             EeeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccc
Confidence            99999987543   333343   48999999988653322333333322111   1357899999999

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.61  E-value=7e-05  Score=51.71  Aligned_cols=24  Identities=38%  Similarity=0.607  Sum_probs=22.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++||+|+|||||++.+.+...+
T Consensus        31 vaLlGpSGaGKsTlLRiIAGLe~p   54 (345)
T COG1118          31 VALLGPSGAGKSTLLRIIAGLETP   54 (345)
T ss_pred             EEEECCCCCcHHHHHHHHhCcCCC
Confidence            689999999999999999998765

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.61  E-value=8.3e-05  Score=47.41  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        30 ~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            468999999999999999999754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
1vg1_A	185	Gdp-bound Rab7 Length = 185		9e-08
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-07
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-07
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-07
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-07
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-07
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-07
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-07
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-07
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-07
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-07
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-07
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-07
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-07
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		6e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		9e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		9e-07
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		9e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		9e-07
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-06
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-06
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-06
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-06
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-06
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-06
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-06
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-06
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		9e-06
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-05
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-05
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-05
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-05
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-05
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-05
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		8e-05
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		8e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		9e-05
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-04
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-04
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-04
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-04
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-04
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-04
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-04
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-04
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-04
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-04
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-04
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-04
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-04
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-04
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-04
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-04
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-04
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		5e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-04
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		6e-04
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-04
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		9e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		9e-04

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L N   +   + +Y  T G   +  E    +D     +++WDT+G
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
             +F+S+  AF R     + VF+   P     L  + D F+ Q+
Sbjct: 67  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L N   +   + +Y  T G   +  E    +D     +++WDT+G
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
             +F+S+  AF R     + VF+   P     L  + D F+ Q+
Sbjct: 67  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L N   +   + +Y  T G   +  E    +D     +++WDT+G
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
             +F+S+  AF R     + VF+   P     L  + D F+ Q+
Sbjct: 67  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L N   +   + +Y  T G   +  E    +D     +++WDT+G
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
             +F+S+  AF R     + VF+   P     L  + D F+ Q+
Sbjct: 67  LERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 64
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYD 90

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 71
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYD 97

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++W
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIW 87
Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVFN 85
           DT+G  +F ++  ++ R  HGII V++
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYD 114

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
           K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 80
Query: 60  TSGDHKFESVWPAFQRDVHGIIFVFN 85
           T+G  +F ++  ++ R  HGII V++
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYD 106

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 64
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYD 90

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 1  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 54
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 55 TAGQERFRTITSSYYRGAHGIIVVYD 80

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 8  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYD 87

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 8  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYD 87

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GK  L     D T  E Y  T GV    R +E      LD    ++++WD
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 71
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  ++ R  HGII V++
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYD 97

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWD 59
           K++++I+G    GKT L     D T  E    T GV  +I   E    L   K  +++WD
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE----LRGKKIRLQIWD 81
Query: 60  TSGDHKFESVWPAFQRDVHGIIFVFN 85
           T+G  +F S+  A+ R   GII V++
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYD 107

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
          +K KI+++G    GKT L +        E Y PT          S+ +DT + E+ LWDT
Sbjct: 6  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA---SFEIDTQRIELSLWDT 62
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
          SG   +++V P    D   ++  F+   P  +  +L
Sbjct: 63 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 98

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
           +K KI+++G    GKT L +        E Y PT          S+ +DT + E+ LWDT
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA---SFEIDTQRIELSLWDT 78
Query: 61  SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
           SG   +++V P    D   ++  F+   P  +  +L
Sbjct: 79  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 114

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          +KILI+G    GK+ L     D T   E   T GV       + ++D +K ++ +WDT+G
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKV--KTISVDGNKAKLAIWDTAG 73
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F ++ P++ R   G+I V++
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYD 96

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
           +K KI+++G    GKT L +        E Y PT          S+ +DT + E+ LWDT
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA---SFEIDTQRIELSLWDT 83
Query: 61  SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
           SG   +++V P    D   ++  F+   P  +  +L
Sbjct: 84  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 119

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           KI+++G    GKT L    C     +    T GV   E   +  +D  + +I+LWDT+G 
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE--RAVDIDGERIKIQLWDTAGQ 79
Query: 64  HKF-ESVWPAFQRDVHGIIFVFN 85
            +F +S+   + R+VH ++FV++
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYD 102

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
            KI+++G    GKT L    C     +    T GV   E   +  +D  + +I+LWDT+G
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE--RAVDIDGERIKIQLWDTAG 87
Query: 63  DHKF-ESVWPAFQRDVHGIIFVFN 85
             +F +S+   + R+VH ++FV++
Sbjct: 88  QERFRKSMVQHYYRNVHAVVFVYD 111

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 5  ILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWDT 60
          +L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++WDT
Sbjct: 1  LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWDT 54
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
          +G  +F ++  ++ R  HGII V++
Sbjct: 55 AGQERFRTITSSYYRGAHGIIVVYD 79

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K+L++G    GK+ L     D T  + Y  T GV       + +L+    ++++WDT+G 
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDF--KIRTISLENKTVKLQIWDTAGQ 68
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           +F ++  ++ R  HGII V++
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYD 90

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDTS 61
          K+L++G    GK+ L     D T   +Y  T GV  +I   E    LD    ++++WDT+
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE----LDGKTVKLQIWDTA 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F ++  ++ R  HGII V++
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYD 89

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDTS 61
           K+L++G    GK+ L     D T   +Y  T GV  +I   E    LD    ++++WDT+
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE----LDGKTVKLQIWDTA 78
Query: 62  GDHKFESVWPAFQRDVHGIIFVFN 85
           G  +F ++  ++ R  HGII V++
Sbjct: 79  GQERFRTITSSYYRGSHGIIIVYD 102

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDTS 61
          K+L++G    GK+ L     D T   +Y  T GV  +I   E    LD    ++++WDT+
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE----LDGKTVKLQIWDTA 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F ++  ++ R  HGII V++
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYD 89

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+LI+G    GK+ L     D T +  Y  T GV    R VE      ++  K ++++WD
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE------INGEKVKLQIWD 64
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++   + R  HG+I V++
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYD 90

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L +   +   +++Y  T G   +  E +   D   T +++WDT+G
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAG 67
Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNN 110
             +F+S+  AF R     + V++         +  + D F+  +++N+
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + K++++G +  GKT +   L      E Y PT       C  +   +  + E+ LWDTS
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET---EEQRVELSLWDTS 83
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
           G   +++V P    D   ++  F+   P  +   L
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 118

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT +       T    Y  T G+  +    +  LD     ++LWDT+
Sbjct: 1  KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLS--KTLYLDEGPVRLQLWDTA 58
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    I V++
Sbjct: 59 GQERFRSLIPSYIRDSAAAIVVYD 82

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + K++++G +  GKT +   L      E Y PT       C  +   +  + E+ LWDTS
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET---EEQRVELSLWDTS 67
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
           G   +++V P    D   ++  F+   P  +   L
Sbjct: 68  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 102

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + K++++G +  GKT +   L      E Y PT       C  +   +  + E+ LWDTS
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET---EEQRVELSLWDTS 66
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
           G   +++V P    D   ++  F+   P  +   L
Sbjct: 67  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 101

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          IK++++G    GK+ +    C     ++Y  T GV  +E      ++     + LWDT+G
Sbjct: 6  IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQIQVNDEDVRLMLWDTAG 63
Query: 63 DHKFESVWPAFQRDVHGIIFVFNS 86
            +F+++  A+ R     + VF++
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFST 87

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV-----RIVECEHSYALDTSKTEIEL 57
          IK+++LG    GK+ +         AE   PT G      R+   EH+        + E+
Sbjct: 4  IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-------VKFEI 56
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP 89
          WDT+G  +F S+ P + R+    + V++   P
Sbjct: 57 WDTAGQERFASLAPXYYRNAQAALVVYDVTKP 88

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 6  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTIRLQLWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 64 GQERFRSLIPSYIRDSAAAVVVYD 87

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           KI++ G    GK+     LC     E    T GV       +  +D  +T ++LWDT+G 
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQ 87
Query: 64  HKFESVWPAFQRDVHGIIFVFN 85
            +F S+  ++ R   G++ +++
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYD 109

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
           IK+L LG    GKT       D     ++  T G+   E    Y             K  
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           ++LWDT+G  +F S+  AF RD  G + +F+
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K+++LG    GKT L    C+    +++  T G   +       +   +  + +WDT+G 
Sbjct: 8  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT--KKLNIGGKRVNLAIWDTAGQ 65
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           +F ++ P + RD +G I V++
Sbjct: 66 ERFHALGPIYYRDSNGAILVYD 87

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++IL++G   AGKT +   L  L       PT G  +   ++            +WD  
Sbjct: 17  EMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFNVETVQYK------NISFTVWDVG 69
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  +  S+W  + R+  G+IFV +S     I E        + + +L N   L+  N
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 71
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYD 95

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           ++IL++G   AGKT +   L  L       PT G  +   ++            +WD  G
Sbjct: 1   MRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFNVETVQYK------NISFTVWDVGG 53
Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
             +  S+W  + R+  G+IFV +S     I E        + + +L N   L+  N
Sbjct: 54  QDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 109

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 2  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 59
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 60 GQERFRSLIPSYIRDSTVAVVVYD 83

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++IL++G   AGKT +   L  L       PT G  +   ++            +WD  
Sbjct: 17  EMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFNVETVQYK------NISFTVWDVG 69
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  +  S+W  + R+  G+IFV +S     I E        + + +L N   L+  N
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 1  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 58
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 59 GQERFRSLIPSYIRDSTVAVVVYD 82

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTIRLQLWDTA 70
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYD 94

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
           IK+L LG    GKT       D     ++  T G+   E    Y    +        K  
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           ++LWDT+G  +F S+  AF RD  G + +F+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
           IK+L LG    GKT       D     ++  T G+   E    Y    +        K  
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           ++LWDT+G  +F S+  AF RD  G + +F+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           ++++ ++G   +GKT   N +     +E+  PT G  +        +      I++WD  
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM------RKVTKGNVTIKIWDIG 75
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSG 87
           G  +F S+W  + R V+ I+++ ++ 
Sbjct: 76  GQPRFRSMWERYCRGVNAIVYMIDAA 101

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
           IK+L LG    GKT       D     ++  T G+   E    Y    +        K  
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           ++LWDT+G  +F S+  AF RD  G +  F+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
           IK+L LG    GKT       D     ++  T G+   E    Y    +        K  
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           ++LWDT+G  +F S+  AF RD  G +  F+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDT--------SKTE 54
           IK L LG    GKT +     D     ++  T G+   E    Y  +          +  
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           ++LWDT+G  +F S+  AF RD  G + +F+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFD 102

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 73
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYD 97

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          K K++ LG    GKT L       +    Y  T G+  +    +  L+     ++LWDT+
Sbjct: 6  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F S+ P++ RD    + V++
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYD 87

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           ++++ ++G   +GKT   N +      E+  PT G  +        +      I+LWD  
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM------RKITKGNVTIKLWDIG 75
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSG 87
           G  +F S+W  + R V  I+++ ++ 
Sbjct: 76  GQPRFRSMWERYCRGVSAIVYMVDAA 101

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K+++LG + AGK+ L          E    T G        + A++ +  + E+WDT+G 
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQ 71
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           ++ S+ P + R     I VF+
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFD 93

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 3  IKILILGPIMAGKTVLANALCD-LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           K++++G    GKT L     D    A  +  T G+          +D  K ++++WDT+
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF--RNKVLDVDGVKVKLQMWDTA 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  +F SV  A+ RD H ++ +++
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYD 92

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GKT +     +      +  T G+    R +E      LD  + ++++WD
Sbjct: 8  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE------LDGKRIKLQIWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  A+ R   GI+ V++
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYD 87

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           ++++ ++G   +GKT   N +      E+  PT G  +        +      I+LWD  
Sbjct: 31  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM------RKITKGNVTIKLWDIG 84
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSG 87
           G  +F S+W  + R V  I+++ ++ 
Sbjct: 85  GQPRFRSMWERYCRGVSAIVYMVDAA 110

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +KIL++G    GK+ L     +      +  T G+       +  ++  K +++LWDT+G
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAG 78
Query: 63  DHKFESVWPAFQRDVHGIIFVFN 85
             +F ++  A+ R   GII V++
Sbjct: 79  QERFRTITTAYYRGAMGIILVYD 101

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+L++G    GKT +     +      +  T G+    R +E      LD  + ++++WD
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE------LDGKRIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
          T+G  +F ++  A+ R   GI+ V++
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYD 89

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          +KIL++G    GK+ L     +      +  T G+       +  ++  K +++LWDT+G
Sbjct: 8  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAG 65
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F ++  A+ R   GII V++
Sbjct: 66 QERFRTITTAYYRGAMGIILVYD 88

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 4   KILILGPIMAGKTVLANALCD-------LTTAEEYHPTQGVRIVECEHSYALDTSKTEIE 56
           K+++LG    GKT L    C+       +TT +    T+ + I            +  + 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI---------GGKRVNLA 72
Query: 57  LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
           +WDT+G  +F ++ P + RD +G I V++
Sbjct: 73  IWDTAGQERFHALGPIYYRDSNGAILVYD 101

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 4  KILILGPIMAGKTVLANALCD-------LTTAEEYHPTQGVRIVECEHSYALDTSKTEIE 56
          K+++LG    GKT L    C+       +TT +    T+ + I            +  + 
Sbjct: 8  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI---------GGKRVNLA 58
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          +WDT+G  +F ++ P + RD +G I V++
Sbjct: 59 IWDTAGQERFHALGPIYYRDSNGAILVYD 87

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          + K+++LG    GK+ L          E    T G   +    S  LD +  + E+WDT+
Sbjct: 8  QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT--QSVCLDDTTVKFEIWDTA 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  ++ S+ P + R     I V++
Sbjct: 66 GQERYHSLAPMYYRGAQAAIVVYD 89

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          KIL++G    GK+ L     +      +  T G+       +  ++  K +++LWDT+G 
Sbjct: 5  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAGQ 62
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           +F ++  A+ R   GII V++
Sbjct: 63 ERFRTITTAYYRGAXGIILVYD 84

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          + K+++LG  + GK+ L          E    T G   +    +  LD +  + E+WDT+
Sbjct: 6  QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G  ++ S+ P + R     I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++IL++G   AGKT +   L  L       PT G   VEC     +        +WD  
Sbjct: 17  EMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFN-VEC-----VQYCNISFTVWDVG 69
Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  +  S+W  +  +  G+IFV +S     I E        + + +L N   L+  N
Sbjct: 70  GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-11
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-09
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-08
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-08
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	9e-08
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-07
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	6e-07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-07
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	7e-07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-07
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	9e-07
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-06
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-06
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-06
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-06
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-06
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-06
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-06
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-06
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-06
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-06
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-06
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-06
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-06
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-06
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-06
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-06
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-06
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-06
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-06
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-06
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-06
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-06
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-06
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-06
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-06
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-06
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-06
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-06
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-06
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-06
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-06
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-06
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-06
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-06
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-06
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-06
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-06
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-06
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-06
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-06
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-06
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-06
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-06
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	7e-06
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	7e-06
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	7e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-06
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-06
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-06
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	9e-06
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	9e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-05
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-05
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-05
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-05
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-05
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-05
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-05
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-05
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-05
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-05
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-05
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-05
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-05
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-05
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-05
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-05
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	7e-05
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	8e-05
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-04
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-04

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 1   MKIKILILGPIMAGKTVLANALCD----------LTTAEEYHPTQGVRIVECEHSYALDT 50
           +  KI+  GP ++GKT     +            ++ A E   T     +  +    +  
Sbjct: 13  INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG-EVKG 71

Query: 51  SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
            KT   L+   G   + +      R V GI+FV +S
Sbjct: 72  FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADS 107

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI----VECEHSYALDTSKTEIEL 57
           +IK+ ++G  MAGKT L   L   T   +   T G+ +             D    E   
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100

Query: 58  --WDTSGDHKFESVWPAFQRDVHGIIFVFN 85
             WD  G     +    F       + + +
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLD 130

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWD 59
          +K KI+++G    GKT L +        E Y PT    + E    S+ +DT + E+ LWD
Sbjct: 6  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT----VFENYTASFEIDTQRIELSLWD 61

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          TSG   +++V P    D   ++  F
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICF 86

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 2  KIKILILGPIMAGKTVLANALCDLT--TAEEYHPTQGVRIVECEHSYALDTSKTEI---E 56
          ++K++I+G   +GKT L   L             T G+ +   +    +   +       
Sbjct: 2  RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDV--KDWPIQIRDKRKRDLVLN 59

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          +WD +G  +F S  P F       + V++
Sbjct: 60 VWDFAGREEFYSTHPHFMTQRALYLAVYD 88

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 48.5 bits (115), Expect = 9e-08
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYH---PTQGVRIVECEHSYALDTSKTEIEL 57
           +  K+L++G   +GK+ + + +    +A +      T  V                 + L
Sbjct: 2   LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-----GNMTLNL 56

Query: 58  WDTSGDHKFESVWPAFQRD-----VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK 112
           WD  G   F   +   Q+D     V  +I VF+      + ++ +F          +   
Sbjct: 57  WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 116

Query: 113 CLLI 116
            + +
Sbjct: 117 KIFV 120

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
           K KI+++G    GKT L +        E Y PT    + E    S+ +DT + E+ LWDT
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT----VFENYTASFEIDTQRIELSLWDT 83

Query: 61  SGDHKFESVWPAFQRDVHGIIFVF 84
           SG   +++V P    D   ++  F
Sbjct: 84  SGSPYYDNVRPLSYPDSDAVLICF 107

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSYALDTSKTEIELW 58
           K +IL++G   +GK+ +   +    +  E      T  +   +  +S     S    ++W
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNS-----SFVNFQIW 74

Query: 59  DTSGDHKFESVWPAFQ---RDVHGIIFVFNS 86
           D  G   F      ++   R    +I+V ++
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTE-IEL 57
          +K++ILG    GKT L +   +   +++Y  T G     + V       +D  K   +++
Sbjct: 9  LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVT------VDGDKVATMQV 62

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WDT+G  +F+S+  AF R     + V+
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVY 89

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
           K++++G    GK+ L   L      +EY PT    I   E SY     +D     +++ D
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----I---EDSYRKQVVIDGETCLLDILD 75

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVF 84
           T+G  ++ ++   + R   G + VF
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVF 100

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++W
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIW 87

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  +F ++  ++ R  HGII V+
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVY 113

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           K+LI+G    GK+ L     D T +  Y  T GV    R VE      ++  K ++++W
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE------INGEKVKLQIW 63

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++   + R  HG+I V+
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVY 89

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          ++ + G    GK+ L       T  E Y PT    +   E +Y    + D S   +++ D
Sbjct: 5  RVAVFGAGGVGKSSLVLRFVKGTFRESYIPT----V---EDTYRQVISCDKSICTLQITD 57

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G H+F ++        H  I V+
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVY 82

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
           + K++++G +  GKT +   L      E Y PT    + E        +  + E+ LWDT
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT----VFENYTACLETEEQRVELSLWDT 82

Query: 61  SGDHKFESVWPAFQRDVHGIIFVF 84
           SG   +++V P    D   ++  F
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCF 106

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          ++++ G    GK+ L       T  + Y PT    I   E +Y    + D S   +++ D
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT----I---EDTYRQVISCDKSVCTLQITD 62

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G H+F ++        H  I VF
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVF 87

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIE 56
           K K++ LG    GKT L       +    Y  T G+    + +       L+     ++
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY------LEDRTVRLQ 68

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
          LWDT+G  +F S+ P++ RD    + V+
Sbjct: 69 LWDTAGLERFRSLIPSYIRDSTVAVVVY 96

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          K++++G    GK+ L   L      +EY PT    I   E SY     +D     +++ D
Sbjct: 6  KLVVVGADGVGKSALTIQLIQNHFVDEYDPT----I---EDSYRKQVVIDGETCLLDILD 58

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  ++ ++   + R   G + VF
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVF 83

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           K+L++G    GK+ L     D T   +Y  T GV    + VE      LD    ++++W
Sbjct: 9  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE------LDGKTVKLQIW 62

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++  ++ R  HGII V+
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVY 88

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA-LDTSKTEIELWD 59
           ++ K++I+G    GKT L          E Y PT    + E   +   +D  + E+ LWD
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT----VFENYIADIEVDGKQVELALWD 79

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVF 84
           T+G   ++ + P    D   I+  F
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCF 104

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           K+L++G    GK+ L     D T  E Y  T GV    R +E      LD    ++++W
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIW 70

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++  ++ R  HGII V+
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVY 96

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIEL 57
            KI ILG    GK+ L     +    + Y PT    I   E+++     ++  +  ++L
Sbjct: 6  SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPT----I---ENTFTKLITVNGQEYHLQL 58

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  ++      +  D++G I V+
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVY 85

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K++++G    GK+ L +         E   T GV    R ++      +D    + ++WD
Sbjct: 7  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ------VDGKTIKAQIWD 60

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  ++  +  A+ R   G + V+
Sbjct: 61 TAGQERYRRITSAYYRGAVGALLVY 85

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 2  KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
          +  +L +G   +GKT+L   L       T      +        + +   +     + L 
Sbjct: 7  QRAVLFVGLCDSGKTLLFVRLLTGQYRDT----QTSITDSSAIYKVN---NNRGNSLTLI 59

Query: 59 DTSGDHKF-ESVWPAFQRDVHGIIFVFNS 86
          D  G       +   F+     ++FV +S
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDS 88

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
            +K++++G    GKT L     D    E Y PT    + E    +  +      + +WDT
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT----VFERYMVNLQVKGKPVHLHIWDT 89

Query: 61  SGDHKFESVWPAFQRDVHGIIFVF 84
           +G   ++ + P F  D   ++  F
Sbjct: 90  AGQDDYDRLRPLFYPDASVLLLCF 113

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          K++++G    GK+ L   L      +E  PT    I   E SY     +D     +++ D
Sbjct: 5  KLVVVGAGGVGKSALTIQLIQNHFVDECDPT----I---EDSYRKQVVIDGETCLLDILD 57

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  ++ ++   + R   G + VF
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVF 82

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            KI++ G    GK+     LC     E    T GV    + +       +D  +T ++LW
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI------VDGERTVLQLW 82

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  +F S+  ++ R   G++ ++
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLY 108

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K++++G    GKT L +       + +   T GV    R V       L T+  + ++W
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM------LGTAAVKAQIW 79

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  ++ ++  A+ R   G + VF
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVF 105

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTE---- 54
           IK+L LG    GKT       D     ++  T G+    + V         +S       
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
           ++LWDT+G  +F S+  AF RD  G + +F
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMF 115

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K+LI+G    GKT       D T    +  T G+    + V           + ++++W
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY------RHEKRVKLQIW 77

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  ++ ++  A+ R   G I ++
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMY 103

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           +KIL++G    GK+ L     +      +  T G+    + V+      ++  K +++LW
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD------INGKKVKLQLW 74

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  +F ++  A+ R   GII V+
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVY 100

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
           K++++G    GK+ L +         E   T GV    R ++      +D    + ++WD
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ------VDGKTIKAQIWD 84

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVF 84
           T+G  ++ ++  A+ R   G + V+
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVY 109

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
          K K++ LG    GKT L       +    Y  T G+    + +       L+     ++L
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY------LEDRTVRLQL 67

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WDT+G  +F S+ P++ RD    + V+
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVY 94

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
          +KIL++G    GK+ L     +      +  T G+    + V+      ++  K ++++W
Sbjct: 4  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD------INGKKVKLQIW 57

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++  A+ R   GII V+
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVY 83

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K +I+G    GK+ L     D      +  T GV    R+V       +D  + ++++W
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN------IDGKQIKLQIW 75

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G   F S+  ++ R   G + V+
Sbjct: 76  DTAGQESFRSITRSYYRGAAGALLVY 101

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
          IK++++G    GK+ +    C     ++Y  T GV    R ++      ++     + LW
Sbjct: 6  IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ------VNDEDVRLMLW 59

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F+++  A+ R     + VF
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVF 85

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTSG 62
          ++++LG    GKT LA+        + +         +  E +  +D   T + + DT  
Sbjct: 6  RVVLLGDPGVGKTSLASLFAGKQERDLHEQL----GEDVYERTLTVDGEDTTLVVVDTWE 61

Query: 63 DHKFESVWPAFQ--RDVHGIIFVF 84
            K +  W      +     + V+
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVY 85

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           K+L++G    GKT +     +      +  T G+    R +E      LD  + ++++W
Sbjct: 9  FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE------LDGKRIKLQIW 62

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++  A+ R   GI+ V+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVY 88

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
           IK + +G    GKT L  +    T   +Y PT    + +    +  ++ +   + LWDT
Sbjct: 8  FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT----VFDNFSANVVVNGATVNLGLWDT 63

Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
          +G   +  + P   R     I  F
Sbjct: 64 AGQEDYNRLRPLSYRGADVFILAF 87

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTS 61
          +K +++G    GKT L  +        EY PT      +      ++D     ++L DT+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT----AFDNFSAVVSVDGRPVRLQLCDTA 76

Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
          G  +F+ + P    +    +  F
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCF 99

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K +I+G +  GK+ L +   +     +   T GV    RI+E      +   K ++++WD
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE------VSGQKIKLQIWD 70

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F +V  ++ R   G + V+
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVY 95

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
           K L++G    GK+ L +   +    ++ + T GV    R+V       +     ++++WD
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN------VGGKTVKLQIWD 80

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVF 84
           T+G  +F SV  ++ R   G + V+
Sbjct: 81  TAGQERFRSVTRSYYRGAAGALLVY 105

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTS 61
           +KI+++G    GKT L  A         Y PT    + E   H       +  + LWDT+
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPT----VFENFSHVMKYKNEEFILHLWDTA 79

Query: 62  GDHKFESVWPAFQRDVHGIIFVF 84
           G  +++ + P    D   ++  F
Sbjct: 80  GQEEYDRLRPLSYADSDVVLLCF 102

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIEL--WDTS 61
          K++++G    GKT            ++Y  T GV +    H     T++  I+   WDT+
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVWDTA 72

Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
          G  KF  +   +       I +F
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMF 95

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K+L++G    GKT       D +    +  T G+    + V           + ++++W
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVY------RHDKRIKLQIW 76

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  ++ ++  A+ R   G + ++
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMY 102

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            KI+++G    GKT L               T GV    + VE      ++  K ++++W
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE------INGEKVKLQIW 80

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  +F S+  ++ R  + +I  +
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTY 106

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTS----KTE 54
           IK L LG    GKT +     D     ++  T G+    + V    +          +  
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
           ++LWDT+G  +F S+  AF RD  G + +F
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLF 101

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWD 59
           ++ K++++G    GKT L          E Y PT    + E       +D  + E+ LWD
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT----VFENYVADIEVDGKQVELALWD 79

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVF 84
           T+G   ++ + P    D   I+  F
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCF 104

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          KI+++G    GK+ L +         +   T GV    R +E      ++  + + ++WD
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLE------IEGKRIKAQIWD 68

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  ++ ++  A+ R   G + V+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVY 93

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            K++++G    GKT +         +E    T GV    + +E      +   + ++++W
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLE------IQGKRVKLQIW 83

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  +F ++  ++ R  +G I  +
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAY 109

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K L++G    GK+ L +   +    ++ + T GV    +I+       +     ++++WD
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN------VGGKYVKLQIWD 65

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F SV  ++ R   G + V+
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVY 90

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
           IK+++LG    GK+ +         AE   PT G     + V       ++    + E+
Sbjct: 3  SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT------INEHTVKFEI 56

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFN 85
          WDT+G  +F S+ P + R+    + V++
Sbjct: 57 WDTAGQERFASLAPXYYRNAQAALVVYD 84

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
          +KILI+G    GK+ L     D T   E   T GV    + +       +D +K ++ +W
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS------VDGNKAKLAIW 69

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++ P++ R   G+I V+
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVY 95

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
          + K+++LG    GK+ L          E    T G     + V       LD +  + E+
Sbjct: 6  QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC------LDDTTVKFEI 59

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WDT+G  ++ S+ P + R     I V+
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVY 86

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           KILI+G    GKT       D +    +  T G+    + +        +  + ++++W
Sbjct: 9  FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY------RNDKRIKLQIW 62

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  ++ ++  A+ R   G I ++
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMY 88

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
           K++ILG    GKT LA+   +   +E Y PT    +   E++Y+    L   +  + L D
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT----V---ENTYSKIVTLGKDEFHLHLVD 78

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVF 84
           T+G  ++  +  +F   VHG + V+
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVY 103

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
          +K++ILG    GKT L N   +   + +Y  T G     + V       +D     +++W
Sbjct: 9  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F+S+  AF R     + VF
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVF 88

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 2   KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
           +  I+I GP  +GKT L   L       T      +Q           A D   + + L 
Sbjct: 48  QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQE-------PLSAADYDGSGVTLV 96

Query: 59  DTSGDHKFESVW----PAFQRDVHGIIFVFNS 86
           D  G  K             + V G+IF+ +S
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 128

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
            IK +++G    GKT L  +        EY PT    + +    +  +D     + LWDT
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVMVDGKPVNLGLWDT 85

Query: 61  SGDHKFESVWPAFQRDVHGIIFVF 84
           +G   ++ + P         +  F
Sbjct: 86  AGQEDYDRLRPLSYPQTDVFLICF 109

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWD 59
          + +K +++G    GKT L  +  +    EEY PT    + +    S  +   +  + L+D
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT----VFDHYAVSVTVGGKQYLLGLYD 72

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G   ++ + P         +  F
Sbjct: 73 TAGQEDYDRLRPLSYPMTDVFLICF 97

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
          K+++LG    GK+ L       T  E+Y PT    I   E  Y     +D+S + +E+ D
Sbjct: 5  KVVVLGSGGVGKSALTVQFVTGTFIEKYDPT----I---EDFYRKEIEVDSSPSVLEILD 57

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F S+   + ++  G I V+
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVY 82

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 2   KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
           + K++I+G   AGKT +         + T+    PT G  V  +            T   
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVIN--------NTRFL 63

Query: 57  LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
           +WD  G     S W  +  +   +I V +S     IS 
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 101

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIELWD 59
           ++++ ++G   +GKT   N +      E+  PT G  +R +   +          I+LWD
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN--------VTIKLWD 73

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVFNS 86
             G  +F S+W  + R V  I+++ ++
Sbjct: 74  IGGQPRFRSMWERYCRGVSAIVYMVDA 100

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
          K++++G    GK+ L           +Y PT    I   E SY     +D     +++ D
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPT----I---EDSYTKICSVDGIPARLDILD 63

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F ++   + R  HG + VF
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVF 88

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
          K++++G    GK+ LA     L     +           E +Y     +D  +  + ++D
Sbjct: 4  KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS------EDTYERRIMVDKEEVTLIVYD 57

Query: 60 TSGDHKFESVWP-AFQRDVHGIIFVF 84
                          +     + VF
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVF 83

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
          ++KI++LG   +GKT L       T  ++Y  T G+    R +              +++
Sbjct: 6  QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP-----GNLNVTLQI 60

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WD  G      +   +     G++ V+
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVY 87

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          K+++LG    GK+ L          E+Y PT    I   E SY     +D  +  +E+ D
Sbjct: 5  KLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----I---EDSYRKQVEVDCQQCMLEILD 57

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F ++   + ++  G   V+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVY 82

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          K++++G    GK+ L          ++Y PT    I   E SY     +D     +++ D
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPT----I---EDSYLKHTEIDNQWAILDVLD 72

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F ++   + R   G + V+
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVY 97

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV---RIVECEHSYALDTSKTEIELWDT 60
          K++++G    GK+ L          E+Y PT+     + V       LD  + +I++ DT
Sbjct: 6  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV------LDGEEVQIDILDT 59

Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
          +G   + ++   + R   G + VF
Sbjct: 60 AGQEDYAAIRDNYFRSGEGFLCVF 83

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
          K+++LG    GK+ L N         +   T GV    + +E      +D     +++WD
Sbjct: 9  KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE------VDGHFVTMQIWD 62

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G  +F S+   F R     +  F
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTF 87

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          ++K+ I+G + +GK+ L +     T  +E  P  G    E      +D     + + D  
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIV----VDGQSYLLLIRDEG 75

Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
          G  + +     F   V  ++FVF
Sbjct: 76 GPPELQ-----FAAWVDAVVFVF 93

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 2  KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
          +  I+I GP  +GKT L   L       T      +Q           A D   + + L 
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQE-------PLSAADYDGSGVTLV 60

Query: 59 DTSGDHKFESVW----PAFQRDVHGIIFVFNS 86
          D  G  K             + V G+IF+ +S
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 92

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIE 56
            ++K+ +LG    GK+ +              PT G     + V             +  
Sbjct: 22  RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP------CGNELHKFL 75

Query: 57  LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
           +WDT+G  +F S+ P + R     + V+
Sbjct: 76  IWDTAGQERFHSLAPMYYRGSAAAVIVY 103

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 2   KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
           +++IL++G   AGKT +   L     +TT     PT G  V  VE +             
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYK--------NICFT 76

Query: 57  LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
           +WD  G  K   +W  + ++  G+IFV +S
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 106

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 17/89 (19%)

Query: 3  IKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIEL 57
          ++IL++G   AGKT +   L     +TT     PT G  V  VE ++            +
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKN--------ISFTV 48

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
          WD  G  K   +W  + ++  G+IFV +S
Sbjct: 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          K++++G    GK+ L          E+Y PT          SY     LD  + +I++ D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----K---ADSYRKKVVLDGEEVQIDILD 72

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G   + ++   + R   G + VF
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVF 97

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           ++++I+G    GKT L     D T  E    T GV    + VE      L   K  +++W
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE------LRGKKIRLQIW 80

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVF 84
           DT+G  +F S+  A+ R   GII V+
Sbjct: 81  DTAGQERFNSITSAYYRSAKGIILVY 106

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
          ++K+ +LG    GK+ +     + +     +PT G     + V+            +  +
Sbjct: 6  ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ------YQNELHKFLI 59

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WDT+G  +F ++ P + R     I V+
Sbjct: 60 WDTAGLERFRALAPMYYRGSAAAIIVY 86

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
            KI+++G    GKT L    C     +    T GV    R V+      +D  + +I+LW
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD------IDGERIKIQLW 74

Query: 59  DTSGDHKF-ESVWPAFQRDVHGIIFVF 84
           DT+G  +F +S+   + R+VH ++FV+
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVY 101

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 17/90 (18%)

Query: 2  KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
          KI++L+LG   AGKT +   L     +TT     PT G  +  ++ +            E
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTV----PTVGVNLETLQYK--------NISFE 69

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
          +WD  G       W  +  D   +I+V +S
Sbjct: 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 17/90 (18%)

Query: 2  KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
          +++IL+LG   AGKT L   L             PTQG  ++ V+ +          ++ 
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHIT----PTQGFNIKSVQSQ--------GFKLN 63

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
          +WD  G  K    W ++  +   +I+V +S
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDS 93

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
          K++++G    GK+ L          E+Y PT          SY     LD  + +I++ D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----K---ADSYRKKVVLDGEEVQIDILD 68

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
          T+G   + ++   + R   G + VF
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVF 93

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIE 56
          +  K+++LG + AGK+ L          E    T G     + +       ++ +  + E
Sbjct: 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA------VNDATVKFE 64

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
          +WDT+G  ++ S+ P + R     I VF
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVF 92

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
           K+++LG    GKT L    C+    +++  T G     + +       +   +  + +W
Sbjct: 7  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN------IGGKRVNLAIW 60

Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
          DT+G  +F ++ P + RD +G I V+
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVY 86

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 3  IKILILGPIMAGKTVLANALCDLT-TAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
           K++++G    GKT L     D    A  +  T G+    ++++      +D  K ++++
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD------VDGVKVKLQM 64

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
          WDT+G  +F SV  A+ RD H ++ ++
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLY 91

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)

Query: 3  IKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIEL 57
          ++ILILG   AGKT +   L     +TT     PT G  V  +  ++         ++ +
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKN--------LKLNV 66

Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
          WD  G       W  +  D   +IFV +S
Sbjct: 67 WDLGGQTSIRPYWRCYYADTAAVIFVVDS 95

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV---RIVECEHSYALDTSKTEIELWDT 60
          K+L+LG    GK+ LA                G    R +       +D  +  + ++D 
Sbjct: 4  KVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTYDRSIV------VDGEEASLMVYDI 56

Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
                  +           + V+
Sbjct: 57 WEQDGGRWLPGHCMAMGDAYVIVY 80

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 4   KILILGPIMAGKTVLANALCDLTT--AEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
           K+ ++G    GK+ L +      +   ++Y  T GV      V    +    T   E+ L
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT----TVSVELFL 77

Query: 58  WDTSGDHKFESVWPAFQRDVHGIIFVF 84
            DT+G   ++     +   V+  I VF
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVF 104

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          KI ++G    GKT   N + D    + Y+ T G  +           +  +  +WDT+G 
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 64 HKFESVWPAFQRDVHGIIFVF 84
           K   +   +     G I  F
Sbjct: 72 EKKAVLKDVYYIGASGAILFF 92

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
           K++++G    GK+ LA     L     + P         E +Y     +D  +  + ++D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP------EDTYERRIMVDKEEVTLVVYD 78

Query: 60  TSGDHKFESVWP-AFQRDVHGIIFVF 84
                           +     + VF
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVF 104

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 2   KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
           + K++I+G   AGKT +         + T+    PT G  V  +            T   
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVIN--------NTRFL 68

Query: 57  LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
           +WD  G     S W  +  +   +I V +S     IS 
Sbjct: 69  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 106

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTS 61
          IK +++G    GKT L  +        EY P     + +    +  +D     + LWDT+
Sbjct: 6  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
          G   ++ + P         +  F
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICF 84

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
            IK + +G    GKT +           +Y PT    + +    + A+D     + LWDT
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVAVDGQIVNLGLWDT 64

Query: 61  SGDHKFESVWPAFQRDVHGIIFVFNSGVPG--------HISELLLFYDYF----V-TQSD 107
           +G   +  + P   R     +  F+              + EL  F        V T+ D
Sbjct: 65  AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124

Query: 108 LNNHKCLLIDNVKP 121
           L + K  L D+   
Sbjct: 125 LRDDKGYLADHTNV 138

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIELWD 59
          ++++L+LG   AGKT +          +   PT G  ++ +E            ++ +WD
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHR--------GFKLNIWD 68

Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNS 86
            G     S W  +     G+I+V +S
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVDS 95

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 17/90 (18%)

Query: 2  KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
          +++ILILG   AGKT +   L     +TT     PT G  V  V  ++         + +
Sbjct: 7  EMRILILGLDGAGKTTILYRLQVGEVVTTI----PTIGFNVETVTYKN--------LKFQ 54

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
          +WD  G       W  +  +   +I+V +S
Sbjct: 55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIE 56
          +++ + ILG   AGK+ L           EY P     +   E +Y     +D     + 
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPN----L---EDTYSSEETVDHQPVHLR 72

Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
          + DT+      +         H  + V+
Sbjct: 73 VMDTADLDTPRNCERYL-NWAHAFLVVY 99

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 2   KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
             K++ LG   AGKT L + L D           PT      E      L  +      +
Sbjct: 25  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV----PTLH-PTSE-----ELTIAGMTFTTF 74

Query: 59  DTSGDHKFESVWPAFQRDVHGIIFVFNS 86
           D  G  +   VW  +   ++GI+F+ + 
Sbjct: 75  DLGGHIQARRVWKNYLPAINGIVFLVDC 102

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 19/92 (20%)

Query: 2   KIKILILGPIMAGKTVLANAL-----CDLTTAEEYHPTQG--VRIVECEHSYALDTSKTE 54
           ++ +L LG   +GKT + N L               PT G  +   +         S   
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL----PTIGFSIEKFKS--------SSLS 68

Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
             ++D SG  ++ ++W  + ++   IIFV +S
Sbjct: 69  FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 26/122 (21%)

Query: 5   ILILGPIMAG--KTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE-LWD 59
           +LI G  + G  KT +A  +C     +     +   + +  C      ++ +T +E L  
Sbjct: 153 VLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQK 204

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI-DN 118
               ++ +  W +       I    +S +   +  LL    Y           CLL+  N
Sbjct: 205 LL--YQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPY---------ENCLLVLLN 252

Query: 119 VK 120
           V+
Sbjct: 253 VQ 254

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 2   KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
             K+L LG   AGKT L + L +    T      PT       +             +  
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIG--------NIKFT 70

Query: 57  LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
            +D  G  +   +W  +  +V+GI+F+ ++
Sbjct: 71  TFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.96
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.96
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.96
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.96
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.96
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.95
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.95
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.93
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.88
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.93
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.92
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.91
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.9
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.89
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.89
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.89
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.88
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.86
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.86
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.86
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.85
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.85
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.84
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.83
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.82
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.81
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.8
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.79
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.79
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.78
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.78
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.78
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.78
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.78
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.78
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.77
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.77
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.77
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.77
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.77
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.77
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.76
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.76
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.76
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.76
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.76
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.76
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.76
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.76
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.75
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.75
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.75
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.75
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.75
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.74
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.74
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.74
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.74
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.73
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.72
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.71
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.71
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.71
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.71
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.7
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.7
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.69
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.68
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.68
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.67
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.67
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.67
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.66
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.62
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.59
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.59
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.57
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.54
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.5
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.47
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.45
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.45
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.4
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.28
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.27
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.25
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.24
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.22
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.18
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.16
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.13
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.13
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.12
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.1
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.98
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.91
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.81
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.72
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.68
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.66
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.65
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.51
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.41
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.29
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.14
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.11
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.06
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.02
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.02
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.96
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.95
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.95
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.92
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.9
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.9
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.9
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.89
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.88
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.87
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.87
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.87
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.86
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.86
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.86
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.86
1g6h_A	257	High-affinity branched-chain amino acid transport	97.85
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.85
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.84
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.84
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.83
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.83
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.83
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.83
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.82
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.81
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.8
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.8
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.8
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.79
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.78
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.78
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.78
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.77
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.76
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.76
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.76
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.75
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.74
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.74
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.73
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.73
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.73
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.73
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.73
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.72
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.71
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.71
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.7
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.69
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.68
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.68
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.68
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.68
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.68
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.67
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.67
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.67
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.66
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.66
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.65
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.65
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.65
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.65
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.65
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.64
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.63
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.63
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.63
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.62
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.62
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.62
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.62
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.61
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.61
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.6
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.58
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.57
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.57
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.56
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.55
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.55
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.55
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.55
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.55
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.54
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.54
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.53
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.52
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.52
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.52
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.5
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.5
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.5
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.5
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.5
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.5
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.47
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.47
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.46
1via_A	175	Shikimate kinase; structural genomics, transferase	97.46
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.46
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.46
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.46
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.45
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.45
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.45
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.44
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.44
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.43
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.43
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.42
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.42
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.42
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.42
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.41
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.41
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.41
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.41
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.41
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.41
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.41
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.41
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.41
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.4
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.38
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.38
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.37
2og2_A	359	Putative signal recognition particle receptor; nuc	97.37
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.37
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.36
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.36
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.36
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.35
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.34
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.34
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.33
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.33
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.33
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.33
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.32
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.31
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.31
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.31
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.31
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.3
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.3
3co5_A	143	Putative two-component system transcriptional RES	97.29
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.29
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.29
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.28
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.28
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.28
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.28
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.27
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.27
3bos_A	242	Putative DNA replication factor; P-loop containing	97.26
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.26
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.25
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.25
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.25
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.24
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.24
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.24
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.24
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.23
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.23
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.23
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.23
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.23
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.22
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.21
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.21
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.2
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.2
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.2
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.19
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.19
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.19
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.18
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.17
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.16
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.16
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.15
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.15
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.13
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.13
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.13
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.13
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.11
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.09
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.07
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.05
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.04
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.03
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.0
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.99
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.99
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.98
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.98
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.97
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.96
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.96
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.96
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.95
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.95
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.95
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.95
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.94
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.94
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.94
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.93
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.92
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.92
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.91
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.9
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.9
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.89
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.89
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.87
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.87
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.86
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.85
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.85
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.83
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.82
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.82
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.81
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.81
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.8
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.8
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.78
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.78
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.77
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.77
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.76
2qgz_A	308	Helicase loader, putative primosome component; str	96.76
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.76
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.75
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.74
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.74
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.74
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.73
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.73
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.72
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.72
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.7
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.7
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.7

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.9e-35  Score=191.51  Aligned_cols=118  Identities=22%  Similarity=0.368  Sum_probs=98.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+|+|++|||||||++++..+.+...+.||++.++.......  ++..+.++||||+|+++|+.++..|++++++++
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~--~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC--SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe--cceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            589999999999999999999999999999999998877666543  457899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..|+..+..... +++|++|||||+|.
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl  130 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL  130 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTC
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccch
Confidence            99999999999999999999987654 47999999999994

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=3.2e-29  Score=157.29  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=103.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||+||++.+...+..+++++++++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR---KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE---EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE---EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            489999999999999999999998888888888876542   22234456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL  120 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccc
Confidence            99999999999999999999887655568999999999995

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=3.8e-29  Score=160.42  Aligned_cols=115  Identities=21%  Similarity=0.429  Sum_probs=102.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.+|.+.++..+..      ..+.+.+||++|++.+...+..+++++|+++
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK------GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE------TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEe------CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            4799999999999999999999998887888999987665433      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  136 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL  136 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence            99999999999999999999877544458999999999995

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=9.5e-29  Score=155.43  Aligned_cols=118  Identities=21%  Similarity=0.387  Sum_probs=104.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI--NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            579999999999999999999999888888889887765554433  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  120 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDX  120 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCc
Confidence            99999999999999999999877653 47999999999994

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.96  E-value=4e-29  Score=163.49  Aligned_cols=116  Identities=22%  Similarity=0.395  Sum_probs=102.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.+|.+..+.   .....++..+.+.+||++|++++..++..+++++++++
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT---ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE---EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            589999999999999999999999998888899987652   22334457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHH-HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISE-LLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+. +..|+..+....  ++.|+++|+||+|.
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  143 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDL  143 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            9999999999999 699999998765  38999999999995

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=5.3e-29  Score=158.77  Aligned_cols=118  Identities=17%  Similarity=0.286  Sum_probs=104.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+ .  .....++..+.+++||++|++.+...+..+++++|+++
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-L--KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-E--EEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-E--EEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            58999999999999999999999988888888888755 2  22234557788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  135 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL  135 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence            99999999999999999999987655568999999999994

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=5.5e-29  Score=159.67  Aligned_cols=119  Identities=25%  Similarity=0.406  Sum_probs=105.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-cchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-SVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++.......  ++..+.+.+||++|++.+. .++..++++++++
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI--DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE--TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE--CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            479999999999999999999999888888888887765555433  3467899999999999998 8899999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++.+|+.+..|+..+.......+.|+++|+||+|.
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  139 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL  139 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            999999999999999999999988765568999999999995

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=6.4e-29  Score=158.13  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=101.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ....  ..++..+.+.+||+||++.+...+..+++++++++
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLI--TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEE--EETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEE--EECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            47999999999999999999998888888888888765 2222  34456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  123 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL  123 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999987766668999999999995

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=1.2e-28  Score=154.91  Aligned_cols=118  Identities=20%  Similarity=0.299  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++++.+...+.++.+.++.......  +...+.+.+||+||++.+...+..+++++|+++
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL--DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            589999999999999999999998888778888887765544433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl  123 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADL  123 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccC
Confidence            99999999999999999999877643 47999999999994

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1e-28  Score=158.66  Aligned_cols=119  Identities=27%  Similarity=0.402  Sum_probs=105.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV--DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE--CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            479999999999999999999999888888888888765554433  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.++..+..|+..+.......+.|+++|+||+|.
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl  133 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK  133 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence            99999999999999999999987665568999999999995

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=4.7e-29  Score=156.31  Aligned_cols=113  Identities=23%  Similarity=0.380  Sum_probs=98.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+.. +.||.+.....+..      ..+.+.+||+||++.++..+..+++++|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEEC------SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEE------CCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence            589999999999999999999887653 56788755443332      45789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  113 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL  113 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence            9999999999999999999877655568999999999995

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.1e-29  Score=161.32  Aligned_cols=118  Identities=19%  Similarity=0.298  Sum_probs=104.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++++.++.......  ++..+.+.+||++|+++++..+..+++++++++
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI--NGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            479999999999999999999999888888899988776555543  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .+.|+++|+||+|.
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl  143 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDL  143 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence            99999999999999999999876543 47899999999994

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.96  E-value=6.6e-29  Score=158.75  Aligned_cols=117  Identities=27%  Similarity=0.416  Sum_probs=101.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+.   .....++..+.+.+||++|++.+...+..+++++++++
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT---ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            689999999999999999999999888888888876542   22334457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|+.+ ..|+..+....  ++.|+++|+||+|..
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~  124 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLR  124 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhh
Confidence            99999999999999 78999887654  379999999999953

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=4.6e-29  Score=161.71  Aligned_cols=118  Identities=19%  Similarity=0.316  Sum_probs=95.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.+|.+.++.......  ++..+.+.+||++|++++...+..+++++++++
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI--QGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE--TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            479999999999999999999999887778888887665554433  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .+.|+++|+||+|.
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl  146 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKSDL  146 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCcc
Confidence            99999999999999999999977653 47999999999995

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=2.3e-28  Score=153.74  Aligned_cols=118  Identities=18%  Similarity=0.281  Sum_probs=104.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++....+.+||+||++.+...+..+++++++++
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY--QNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE--CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            579999999999999999999999888888889888765554433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... +..|+++|+||+|.
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl  123 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL  123 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECCcc
Confidence            99999999999999999999877533 57999999999995

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=156.17  Aligned_cols=117  Identities=23%  Similarity=0.402  Sum_probs=101.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI--NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE--TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE--CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            479999999999999999999999888788888887665554433  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.++..+..|+..+.....  +.|+++|+||+|.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl  125 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNCD--DVCRILVGNKNDD  125 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCT--TSEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECCCC
Confidence            99999999999999999999977654  7999999999994

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=5.4e-29  Score=160.52  Aligned_cols=115  Identities=18%  Similarity=0.358  Sum_probs=98.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||+++|++..+.. .+.+|.+.....+..      ..+.+.+||++|++.+...+..+++++|++
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEK------GRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEE------TTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEe------CCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            4799999999999999999999998887 788999976555432      678999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCC-------CCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDL-------NNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|..+..|+..+......       .+.|+++|+||+|.
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  139 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA  139 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence            9999999999999999999988765221       27899999999995

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=1.1e-28  Score=157.69  Aligned_cols=114  Identities=22%  Similarity=0.416  Sum_probs=100.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++. ...+.||.+........      ....+.+||+||++.++..+..+++++|+++
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH------RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE------TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            4799999999999999999999988 66778888866544443      4679999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+.++.+.....+.|+++|+||+|.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  131 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL  131 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence            99999999999999999999877654458999999999995

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=9.8e-29  Score=154.97  Aligned_cols=118  Identities=20%  Similarity=0.299  Sum_probs=100.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+.   .....++..+.+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR---KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE---EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            589999999999999999999998887777788776542   22233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+..+.......+.|+++|+||+|.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  121 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  121 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence            99999999999999999999988766568999999999994

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.3e-28  Score=157.24  Aligned_cols=118  Identities=17%  Similarity=0.275  Sum_probs=104.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  +...+.+.+||+||++.+...+..+++.+++++
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC--GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC--SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe--CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            579999999999999999999999887788899988766555433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl  140 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCDL  140 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence            99999999999999999999877653 47999999999995

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=3e-28  Score=154.84  Aligned_cols=118  Identities=21%  Similarity=0.318  Sum_probs=104.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV--NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE--TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE--CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            479999999999999999999999888777888887766555433  345789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... ++.|+++|+||+|.
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl  129 (181)
T 2efe_B           90 IVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDL  129 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcc
Confidence            99999999999999999999987653 47999999999995

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=1.7e-28  Score=153.71  Aligned_cols=118  Identities=21%  Similarity=0.321  Sum_probs=102.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+..+ .  .....++..+.+.+||+||++.+...+..+++++++++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-R--KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-E--EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-E--EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            58999999999999999999999888877778877543 2  22234456788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence            99999999999999999999987765568999999999994

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=1.3e-28  Score=154.70  Aligned_cols=117  Identities=21%  Similarity=0.400  Sum_probs=104.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++++++
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV--NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE--TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE--CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            589999999999999999999999888888899887776555543  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+....  .+.|+++|+||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl  121 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDL  121 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence            9999999999999999999987765  47899999999994

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-28  Score=160.27  Aligned_cols=117  Identities=27%  Similarity=0.419  Sum_probs=102.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+. .  ....++..+.+.+||++|++.+...+..+++++++++
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-A--SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-E--EEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-E--EEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            589999999999999999999999888888888877552 2  2334457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|+.+ ..|+..+....  .+.|+++|+||+|..
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~  145 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLR  145 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhc
Confidence            99999999999999 78999887654  379999999999953

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=9.2e-29  Score=158.39  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=96.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+. .+.+|.+.....+..      ..+.+.+||++|+++++..+..+++++|+++
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI------NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE------TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            579999999999999999999988776 667888765554444      3589999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  129 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  129 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence            99999999999999999999987654458999999999995

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.96  E-value=1.6e-28  Score=158.12  Aligned_cols=116  Identities=18%  Similarity=0.256  Sum_probs=102.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+..   ....++..+.+.+||++|++.+...+..+++++++++
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH---VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE---EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE---EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            4899999999999999999999999888888998876543   2334557788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+ ..|+..+....  .+.|+++|+||+|.
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl  139 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDL  139 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            99999999999997 78998887654  37999999999994

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=158.29  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=97.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++++.+...+.+|.+..+. .  ....++..+.+.+||++|++.++.. ..+++++++++
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-S--EETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-E--EEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-E--EEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            589999999999999999999999988888899887552 2  2233457789999999999998875 67999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.....  ..+.|+++|+||+|.
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  139 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM  139 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence            99999999999999999999876531  147899999999995

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=2.7e-28  Score=155.92  Aligned_cols=118  Identities=18%  Similarity=0.299  Sum_probs=100.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+...+.++.+..+.   .....++..+.+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR---KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE---EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE---EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            589999999999999999999998887777777764332   22234457788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  121 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL  121 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence            99999999999999999999988766678999999999995

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=1.1e-28  Score=157.98  Aligned_cols=112  Identities=18%  Similarity=0.292  Sum_probs=95.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++++.+...+.++.+ .+   ......++..+.+.+||++|++.++     +++++++++
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~---~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF---KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE---EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE---EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            58999999999999999999999998877777744 22   2233445577899999999998876     888999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI  131 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999987755457999999999995

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=156.64  Aligned_cols=118  Identities=25%  Similarity=0.389  Sum_probs=104.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE--CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            479999999999999999999999888888888887766555543  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl  133 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDL  133 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccc
Confidence            99999999999999999999977654 47899999999994

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.96  E-value=1.7e-28  Score=157.68  Aligned_cols=118  Identities=22%  Similarity=0.315  Sum_probs=99.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||++|++.+...+..+++++++++
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI--DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE--TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            589999999999999999999999888777788887665544433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl  138 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDL  138 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccc
Confidence            99999999999999999999977543 47999999999995

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=7.4e-29  Score=160.45  Aligned_cols=115  Identities=23%  Similarity=0.269  Sum_probs=91.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+. .+.+|.+.+...+..      ..+.+.+||+||++.++..+..+++++++++
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTI------AGMTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEE------TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEE------CCEEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            479999999999999999999987764 466777765444433      2379999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|.++..|+.++.+.....+.|+++|+||+|..
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  139 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP  139 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence            999999999999999999999776544589999999999953

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=159.40  Aligned_cols=118  Identities=22%  Similarity=0.275  Sum_probs=98.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ..  ....++..+.+.+||++|++.+...+..+++.+++++
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SK--IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EE--EEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EE--EEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            57999999999999999999999998888888888655 22  2233446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  141 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL  141 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence            99999999999999999999987766568999999999994

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=1.8e-28  Score=155.66  Aligned_cols=118  Identities=19%  Similarity=0.310  Sum_probs=103.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+. .  ....++..+.+.+||+||++.+...+..+++.+++++
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-K--ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-E--EEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-E--EEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            479999999999999999999999888888888887654 2  2233446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++++..+..|+..+.+.....+.|+++|+||+|.
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  126 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  126 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999876555568999999999994

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=2.4e-28  Score=154.82  Aligned_cols=119  Identities=20%  Similarity=0.321  Sum_probs=100.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.++..+..+++++++++
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV--DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE--TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE--CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            479999999999999999999999888888888888765555433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+.....   ..+.|+++|+||+|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  128 (177)
T 1wms_A           85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI  128 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence            99999999999999999999876543   247899999999995

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=3.7e-28  Score=153.08  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=99.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+. .+.|+.+.....+..      ....+.+||+||++.++..+..+++++|+++
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY------KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE------TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE------CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            479999999999999999999988764 466788765544444      3679999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|..+..|+..+.......+.|+++|+||+|.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  120 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM  120 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence            99999999999999999998877654458999999999995

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=2.2e-28  Score=157.31  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=98.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+. .+.+|.+.....+..      ..+.+.+||+||++.++..+..+++++++++
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAI------GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEE------TTEEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEE------CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            469999999999999999999998764 566788775444433      2389999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|+++..|+.++.+.....+.|+++|+||+|..
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  137 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP  137 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence            999999999999999999998776544589999999999953

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=4e-28  Score=155.63  Aligned_cols=118  Identities=18%  Similarity=0.331  Sum_probs=103.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++......  .++..+.+.+||++|++.+...+..+++++|+++
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVY--RHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEE--ETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEE--ECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            47999999999999999999999988878888888766544443  3346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|.
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl  139 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDL  139 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccc
Confidence            9999999999999999999987764 247899999999995

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.96  E-value=1.5e-28  Score=154.63  Aligned_cols=118  Identities=20%  Similarity=0.394  Sum_probs=97.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++++++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI--NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES--SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            589999999999999999999998887778888887665544433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  120 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM  120 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccC
Confidence            99999999999999999999877653 47899999999995

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.96  E-value=3.1e-28  Score=156.12  Aligned_cols=121  Identities=23%  Similarity=0.288  Sum_probs=104.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEE-EEEeeeec-------CCceEEEEEEecCCCcccccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIV-ECEHSYAL-------DTSKTEIELWDTSGDHKFESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-------~~~~~~~~i~d~~g~~~~~~~~~~~   73 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++. ........       ....+.+.+||+||++.+...+..+
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   90 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF   90 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence            479999999999999999999999888888899988765 33332211       1126899999999999999999999


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus        91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  139 (195)
T 3bc1_A           91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL  139 (195)
T ss_dssp             TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred             HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            9999999999999999999999999999987765568999999999995

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=3.4e-29  Score=159.64  Aligned_cols=118  Identities=17%  Similarity=0.336  Sum_probs=78.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL--DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE--TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            479999999999999999999998887778888887766554433  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  125 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDV  125 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--C
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccC
Confidence            99999999999999999999977643 47899999999995

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=3.2e-28  Score=158.00  Aligned_cols=118  Identities=23%  Similarity=0.376  Sum_probs=104.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++.......  ++..+.+.+||+||++.++..+..+++++|+++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL--DGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE--TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            479999999999999999999999988888889888766554433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  125 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDL  125 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence            99999999999999999999876653 47999999999995

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=1.3e-28  Score=155.05  Aligned_cols=118  Identities=19%  Similarity=0.345  Sum_probs=96.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++++++
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI--GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES--SSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE--CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            589999999999999999999998888778888888766554433  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  123 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDL  123 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECccc
Confidence            99999999999999999998876543 37899999999994

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=156.16  Aligned_cols=118  Identities=18%  Similarity=0.298  Sum_probs=104.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++.......  +...+.+.+||+||++++...+..+++++++++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML--GTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE--TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            479999999999999999999999888788888888766554433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|..+..|+..+..... .+.|+++|+||+|.
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl  142 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDL  142 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTSC-TTCEEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECCCc
Confidence            99999999999999999999876543 47999999999994

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=2.8e-28  Score=154.51  Aligned_cols=118  Identities=22%  Similarity=0.376  Sum_probs=103.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++++++
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE--CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            479999999999999999999998888888888887766555433  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  131 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDL  131 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcc
Confidence            99999999999999999999876543 47999999999994

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=156.38  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=100.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC-CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT-TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||++++.+.. +...+.+|.+.....+..      ..+.+.+||++|++.++..+..+++++|++
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS------SSLSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEEC------SSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEE------CCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            4799999999999999999999987 566778888865444433      347999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCC--CCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDL--NNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|+.+..|+..+......  .+.|+++|+||+|.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  138 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL  138 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence            9999999999999999999998876544  57999999999995

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=4.3e-28  Score=156.97  Aligned_cols=118  Identities=21%  Similarity=0.332  Sum_probs=103.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++......  .++..+.+.+||+||++.+...+..+++++++++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY--RNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEE--ECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            47999999999999999999999988878888888766554443  3446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+.... ..+.|+++|+||+|.
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl  125 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDM  125 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccc
Confidence            9999999999999999999987654 247899999999995

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=4.1e-28  Score=153.78  Aligned_cols=118  Identities=20%  Similarity=0.320  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE--TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            479999999999999999999999888778888887665554433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  132 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL  132 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence            99999999999999999999877653 47999999999995

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=2.4e-28  Score=156.01  Aligned_cols=118  Identities=20%  Similarity=0.302  Sum_probs=103.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV--GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            479999999999999999999999888888888887665554433  446689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  127 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDL  127 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence            99999999999999999998876544 47999999999995

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.5e-28  Score=156.75  Aligned_cols=114  Identities=23%  Similarity=0.298  Sum_probs=99.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+ ..+.++.+.....+..      ..+.+.+||++|++.++..+..+++++|+++
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI------NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE------TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE------CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            47999999999999999999999877 5667788766554443      3489999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  134 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  134 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence            99999999999999999999877643458999999999995

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=1.5e-28  Score=156.89  Aligned_cols=114  Identities=24%  Similarity=0.391  Sum_probs=97.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+ ..+.||.|........      ..+.+.+||++|++.++..+..+++++++++
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~------~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQS------QGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEE------TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEE------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            47999999999999999999998754 4466788865444333      3678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  129 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL  129 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence            99999999999999999998876544458999999999995

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=158.74  Aligned_cols=119  Identities=13%  Similarity=0.138  Sum_probs=97.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-chHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-VWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||+++|.+......+.++.+.++......  .++..+.+.+||++|++.+.. ++..+++.++++
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM--VDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEE--ETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEE--ECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            57999999999999999999986554433445555554444432  345778999999999988765 778889999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  142 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL  142 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence            999999999999999999999987665458999999999995

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=4.3e-28  Score=157.06  Aligned_cols=118  Identities=20%  Similarity=0.299  Sum_probs=103.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+.   .....++..+.+.+||+||++.+...+..+++.+++++
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR---KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE---EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE---EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            479999999999999999999998888888888876542   22233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  131 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence            99999999999999999999988766568999999999995

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=1.6e-28  Score=158.18  Aligned_cols=114  Identities=23%  Similarity=0.378  Sum_probs=93.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+. .+.||.+.....+..      ..+.+.+||+||++.++..+..+++++|+++
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEE------TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEE------CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            479999999999999999999988765 456777754433333      4589999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl  142 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM  142 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence            99999999999999999999877655558999999999995

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=2e-28  Score=157.58  Aligned_cols=118  Identities=25%  Similarity=0.416  Sum_probs=96.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++.......  ++..+.+.+||++|++.+...+..+++++|+++
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL--RGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE--CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            579999999999999999999998887778888887765555433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilV~NK~Dl  143 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDC  143 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence            99999999999999999988876543 47999999999994

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3e-28  Score=156.72  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=101.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.+|.+..+. .  ....++..+.+.+||++|+++++..+..+++++|+++
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-V--SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-E--EEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-E--EEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            479999999999999999999999888888888876542 2  2233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++++|..+. .|+..+.....  +.|+++|+||+|..
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~  135 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAP--NVPFLLIGTQIDLR  135 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST--TCCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEEChhhc
Confidence            999999999999997 89999877643  79999999999953

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=3.6e-28  Score=154.99  Aligned_cols=118  Identities=20%  Similarity=0.301  Sum_probs=103.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+..+..   ....++..+.+.+||+||++.+...+..+++.+++++
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK---KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE---EEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE---EEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            4799999999999999999999988887788887765422   2233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  135 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  135 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999999999988766568999999999994

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.96  E-value=3e-28  Score=157.52  Aligned_cols=116  Identities=17%  Similarity=0.251  Sum_probs=94.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.+|.+..+.   .....++..+.+.+||++|++++...+..+++++|+++
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS---AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE---EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE---EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            479999999999999999999998887778888876442   22233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl  136 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCP--KAPIILVGTQSDL  136 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS--SSCEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEECHhh
Confidence            999999999999996 79999877644  7999999999995

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.2e-28  Score=153.59  Aligned_cols=118  Identities=20%  Similarity=0.380  Sum_probs=95.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||++++.+..+. ..+.++.+.++......  .++..+.+.+||+||++.++..+..++++++++
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD--VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEE--ETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEE--ECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            579999999999999999999998875 46778888876554443  344678999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  128 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDS  128 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCST
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence            999999999999999999999877654 57999999999995

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.96  E-value=1.4e-28  Score=156.00  Aligned_cols=120  Identities=18%  Similarity=0.286  Sum_probs=100.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+.++......... ...+.+++||+||++.+...+..+++++|+++
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   84 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG-NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL   84 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT-TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC-CCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence            58999999999999999999999888777788888766555544321 24689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.....  ....|+++|+||+|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl  127 (178)
T 2hxs_A           85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL  127 (178)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence            99999999999999999998876421  123458999999995

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.96  E-value=1.9e-28  Score=159.68  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=99.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.+|.+..+. ..  ...++..+.+.+||++|++.+..++..+++++|+++
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-AN--VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EE--EECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EE--EEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            589999999999999999999999888888888886542 22  233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl  125 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL  125 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEEEEEECHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEeCHHh
Confidence            999999999999996 89999877643  7999999999994

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.96  E-value=3e-28  Score=153.34  Aligned_cols=119  Identities=13%  Similarity=0.114  Sum_probs=87.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-chHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-VWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||++++.+........++.+.+......  ..++..+.+.+||++|++.+.. .+..+++.++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~   79 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRI--MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAF   79 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEE--EETTEEEEEEEECCCCC--------CHHHHHCSEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEE--EECCeEEEEEEEECCCccccchhhhhhhhccCCEE
Confidence            4799999999999999999999876655444554444444333  3345778999999999998876 777889999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  121 (169)
T 3q85_A           80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL  121 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred             EEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcch
Confidence            999999999999999999999988776568999999999995

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=158.05  Aligned_cols=118  Identities=21%  Similarity=0.374  Sum_probs=93.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV--DGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE--TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE--CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            479999999999999999999998887777888887665444433  346788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl  145 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADI  145 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGG
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccc
Confidence            99999999999999999998876543 47899999999995

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.96  E-value=1e-27  Score=154.70  Aligned_cols=117  Identities=20%  Similarity=0.303  Sum_probs=101.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecC--------------------------------
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALD--------------------------------   49 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------------------------   49 (135)
                      .+||+++|++|||||||+++|++..+...+.++.+.++..........                                
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY   86 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999999888888899888776655544211                                


Q ss_pred             ---CceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         50 ---TSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        50 ---~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                         .....+.+||+||++.+...+..+++.+|++++|||++++.++..+..|+..+.....   .|+++|+||+|
T Consensus        87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~piilv~NK~D  158 (208)
T 3clv_A           87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---YIIILVANKID  158 (208)
T ss_dssp             CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---CEEEEEEECTT
T ss_pred             cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---CcEEEEEECCC
Confidence               0128899999999999999999999999999999999999999999999999976543   89999999999

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.4e-28  Score=155.90  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=101.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||++|++. ...+..+++.+++++
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR---HQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE---EEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            479999999999999999999999888888888886542   2223345678999999999988 778899999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl  144 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL  144 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence            99999999999999999999887665568999999999994

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.96  E-value=3.4e-28  Score=152.66  Aligned_cols=117  Identities=14%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+.... ...++.+..+   ......++..+.+.+||++|++.++..+..+++.+++++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   77 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV   77 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE---EEEEEETTEEEEEEEEECC---------------CCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce---EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEE
Confidence            479999999999999999999976543 3345555433   222244557889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  118 (166)
T 3q72_A           78 IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL  118 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccc
Confidence            99999999999999999999987765568999999999995

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.96  E-value=3.3e-28  Score=154.57  Aligned_cols=120  Identities=21%  Similarity=0.394  Sum_probs=92.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++........ .+..+.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   86 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-SSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEc-CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence            5799999999999999999999998888888888877666555432 135689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+.....   ..+.|+++|+||+|.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  130 (182)
T 1ky3_A           87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA  130 (182)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence            99999999999999999998876542   247899999999995

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.96  E-value=5.6e-28  Score=154.07  Aligned_cols=116  Identities=20%  Similarity=0.283  Sum_probs=100.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||+||++.+...+..+++++|+++
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE---EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE---EEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            579999999999999999999998888778888876442   22234457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl  121 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP--NTPIILVGTKLDL  121 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST--TSCEEEEEECHHH
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC--CCCEEEEeEcccc
Confidence            999999999999997 79998876644  7999999999994

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.96  E-value=1.2e-27  Score=149.68  Aligned_cols=118  Identities=17%  Similarity=0.293  Sum_probs=101.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+...+.++.+..+   ......++..+.+.+||+||++.+...+..+++.+++++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY---RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE---EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            47999999999999999999999888777777776543   222233456788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl  120 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL  120 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence            99999999999999999999887765557999999999994

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=8e-28  Score=152.68  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+.. +.+|.+..+ ...  ...++..+.+++||++|+++     ..+++++|+++
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKE--MLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEE--EEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEE--EEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            5899999999999999999999988876 778887543 222  23345678999999999876     56889999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.....  ..+.|+++|+||+|.
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI  120 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            99999999999999997666554322  247899999999996

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8.5e-29  Score=159.10  Aligned_cols=118  Identities=20%  Similarity=0.327  Sum_probs=103.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||++|++.+...+..+++++++++
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR--HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE--TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE--CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            589999999999999999999999888888888877666555533  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .+.|+++|+||+|.
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  140 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDM  140 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence            99999999999999999999977553 48999999999995

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.96  E-value=7.9e-28  Score=156.00  Aligned_cols=120  Identities=27%  Similarity=0.428  Sum_probs=104.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV--DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES--SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            579999999999999999999999888888888888766555433  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++.+|..+..|+..+.....   ..+.|+++|+||+|..
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            99999999999999999998876542   1368999999999953

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.96  E-value=1.8e-28  Score=160.27  Aligned_cols=121  Identities=26%  Similarity=0.372  Sum_probs=103.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecC--------CceEEEEEEecCCCcccccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALD--------TSKTEIELWDTSGDHKFESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~~~i~d~~g~~~~~~~~~~~   73 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++..........        ...+.+.+||++|++.+...+..+
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~  104 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF  104 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence            479999999999999999999999887778888887766555444221        116889999999999999999999


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++.+|++++|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus       105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl  153 (217)
T 2f7s_A          105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL  153 (217)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence            9999999999999999999999999998876654468999999999995

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.9e-28  Score=159.07  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=96.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++.......  ++..+.+.+||+||++++...+..+++.+++++
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI--EGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE--TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            479999999999999999999999888778888887766554433  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl  130 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDL  130 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC---CEEEEEECCGGG
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence            99999999999999999999976643 47899999999994

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.1e-28  Score=157.91  Aligned_cols=119  Identities=16%  Similarity=0.270  Sum_probs=91.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--CCCCCccCCcceeEEEEEeeee-cCCceEEEEEEecCCCcccccchHHhhccCc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--TTAEEYHPTQGVRIVECEHSYA-LDTSKTEIELWDTSGDHKFESVWPAFQRDVH   78 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   78 (135)
                      ++||+++|++|||||||++++.+.  .+...+.+|.+.++..+..... .++..+.+.+||++|++++...+..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  4445678888888776665431 1235778999999999999999999999999


Q ss_pred             EEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVP-GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|||++++ ++|+.+..|+.++....  ++.|+++||||+|.
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  124 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDV  124 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCc
Confidence            99999999998 58999999999987654  37899999999995

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=7.3e-29  Score=160.78  Aligned_cols=121  Identities=18%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--CCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHG   79 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   79 (135)
                      .+||+++|++|||||||++++.+.  .+...+.+|.+.++.............+.+.+||+||++.+...+..+++++|+
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   99 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY   99 (208)
T ss_dssp             EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence            479999999999999999999998  777777888876555444443221127899999999999999999999999999


Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117         80 IIFVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG  122 (135)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~  122 (135)
                      +++|||++++.+|+.+..|+..+.....  ..+.|+++|+||+|.
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  144 (208)
T 2yc2_C          100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL  144 (208)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECccc
Confidence            9999999999999999999999987654  257999999999995

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=3.9e-28  Score=155.59  Aligned_cols=114  Identities=23%  Similarity=0.336  Sum_probs=99.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+. .+.||.+.....+..      ..+.+.+||+||++.++..+..+++++|+++
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY------KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE------TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE------CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            479999999999999999999987764 356787765544443      3679999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  135 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL  135 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence            99999999999999999999877655568999999999995

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=157.48  Aligned_cols=118  Identities=21%  Similarity=0.324  Sum_probs=93.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++.......  ++..+.+.+||++|++.+...+..+++.+++++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV--GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE--TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE--CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            479999999999999999999998888778888887665554433  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  142 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDL  142 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCc
Confidence            99999999999999999999876544 47999999999995

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=1.5e-27  Score=155.26  Aligned_cols=118  Identities=21%  Similarity=0.399  Sum_probs=103.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++++..+...+.++.+.++.......  ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI--NGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE--TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            479999999999999999999998888788888887765554433  345689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl  137 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM  137 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence            99999999999999999999877654 47899999999996

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.96  E-value=2.4e-28  Score=160.24  Aligned_cols=117  Identities=18%  Similarity=0.256  Sum_probs=104.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++.......  +...+.+.+||++|++.+...+..+++++++++
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE--TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            589999999999999999998887777778889888776665543  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|..+..|+..+.....  +.|+++|+||+|.
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl  131 (221)
T 3gj0_A           93 IMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVDI  131 (221)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHST--TCCEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECCcc
Confidence            99999999999999999999987654  7999999999994

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=3.8e-28  Score=154.70  Aligned_cols=114  Identities=23%  Similarity=0.365  Sum_probs=95.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+ ..+.++.+........      ....+.+||+||++.++..+..+++++|+++
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY------KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE------TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            47999999999999999999998776 5667888865544443      3489999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  131 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ  131 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence            99999999999999999999977654568999999999995

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.95  E-value=5.1e-28  Score=158.17  Aligned_cols=116  Identities=19%  Similarity=0.374  Sum_probs=79.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||++|++.+...+..+++++++++
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM---VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE---EEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE---EEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            489999999999999999999998887777788765432   22234457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+. .|+..+....  .+.|+++|+||+|.
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  150 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDL  150 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence            999999999999996 7999987654  37899999999995

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=2.1e-27  Score=152.23  Aligned_cols=118  Identities=19%  Similarity=0.317  Sum_probs=91.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||++|++.+...+..+++.+++++
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR---KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE---EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            479999999999999999999998887777777765432   22233456788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++..+++.+..|+..+.......+.|+++|+||+|.
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl  138 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL  138 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence            99999999999999999999887665557999999999995

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=150.70  Aligned_cols=118  Identities=15%  Similarity=0.124  Sum_probs=88.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--cccchHHhhccCcE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--FESVWPAFQRDVHG   79 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~   79 (135)
                      .+||+++|++|||||||++++.+..+...+ ++.+.++......  .++..+.+.+||++|++.  +......+++.+++
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLT--VDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEE--ETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEE--ECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            589999999999999999999998765433 4556555444333  344678999999999987  56677888999999


Q ss_pred             EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl  123 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL  123 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhh
Confidence            9999999999999999999999877654457999999999995

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.6e-27  Score=149.99  Aligned_cols=118  Identities=21%  Similarity=0.288  Sum_probs=99.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+..+...   ...+...+.+.+||+||++.+...+..+++.+++++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   79 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV---ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI   79 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE---EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE---EEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence            58999999999999999999999888777778877654322   233456788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhcc-CCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQS-DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+.... ...+.|+++|+||+|.
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl  121 (172)
T 2erx_A           80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE  121 (172)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccc
Confidence            9999999999999999988887643 2247899999999994

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.95  E-value=1.2e-27  Score=154.97  Aligned_cols=116  Identities=23%  Similarity=0.339  Sum_probs=100.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.++.+.++...   ...++..+.+.+||+||++.+...+..+++++|+++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD---IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE---EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE---EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            58999999999999999999999988888888888765322   233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+ ..|+..+.....  +.|+++|+||+|.
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl  141 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDL  141 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST--TCCEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecHHh
Confidence            99999999999999 789888876543  7999999999995

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.95  E-value=1.3e-27  Score=155.22  Aligned_cols=116  Identities=20%  Similarity=0.280  Sum_probs=99.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+   ......++..+.+.+||+||++.+...+..+++++|+++
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE---EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee---EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            47999999999999999999999888877778876533   222334557788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+. .|+..+....  .+.|+++|+||+|.
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  146 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL  146 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhh
Confidence            999999999999996 8999887765  47999999999993

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.95  E-value=2.1e-28  Score=155.66  Aligned_cols=116  Identities=18%  Similarity=0.227  Sum_probs=86.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||+||++++...+..+++++|+++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS---ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCCC----------CB---CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE---EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            479999999999999999999998887777777765332   22233446678899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl  124 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP--GVPIVLVGTKLDL  124 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEEEEEECHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEechhh
Confidence            999999999999997 79999877643  7999999999994

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.9e-27  Score=154.61  Aligned_cols=116  Identities=23%  Similarity=0.340  Sum_probs=94.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+...+.++.+..+...   ...++..+.+.+||+||++.+...+..+++++++++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD---IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE---EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE---EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            57999999999999999999999988877778887655322   233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+ ..|+..+....  ++.|+++|+||+|.
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl  141 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDL  141 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhh
Confidence            99999999999999 78988887654  37999999999995

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=159.73  Aligned_cols=118  Identities=25%  Similarity=0.389  Sum_probs=98.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++.......  ++..+.+.+||++|++.+...+..+++++|+++
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE--TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            479999999999999999999998887777777777665554433  346689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl  150 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDL  150 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccC
Confidence            99999999999999999999966544 47999999999994

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.95  E-value=3.4e-27  Score=154.34  Aligned_cols=119  Identities=19%  Similarity=0.203  Sum_probs=103.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++++.+...+.++.+.......... ..+..+.+.+||++|++.+...+..+++++|+++
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD-DQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI   89 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEB-TTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEe-CCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence            689999999999999999999998888778888887665554432 2234589999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  129 (218)
T 4djt_A           90 LFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDI  129 (218)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence            99999999999999999999877654 36899999999994

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.9e-27  Score=151.78  Aligned_cols=118  Identities=21%  Similarity=0.294  Sum_probs=100.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+..   ....+...+.+.+||+||++.+...+..+++.+|+++
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ---VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE---EEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE---EEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4799999999999999999999988887778888765432   2233456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+..... ..+.|+++|+||+|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl  126 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE  126 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence            99999999999999988887766432 246899999999995

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=1.2e-27  Score=153.83  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=91.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC-----------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE-----------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW   70 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~   70 (135)
                      .+||+++|++|||||||++.+.+ .+...           +.+|.+.++...... ..++..+.+++||++|++.++..+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~~~   91 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIG-EVKGFKTRFHLYTVPGQVFYNASR   91 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCC-CSSSCEEEEEEEECCSCCSCSHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccc-cccCCceEEEEEeCCChHHHHHHH
Confidence            58999999999999999976665 44433           234555443322220 234567899999999999999999


Q ss_pred             HHhhccCcEEEEEEeCC------CcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSG------VPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++++++++++|||++      +.++|..+..|+.++..  ...+.|+++|+||+|.
T Consensus        92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl  147 (198)
T 3t1o_A           92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDL  147 (198)
T ss_dssp             HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTS
T ss_pred             HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhc
Confidence            99999999999999999      55778888899998832  3358999999999994

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.4e-26  Score=151.33  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=92.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC--CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchHHhhccCc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT--AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWPAFQRDVH   78 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~   78 (135)
                      .+||+++|++|||||||++++.+...  ...+ ++.+.+++.....  .++..+.+.+||++|++. ++.+...+++.++
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~--~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLM--VDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEE--ETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEE--ECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            47999999999999999999996433  2333 4466655444443  345778899999999876 5556677889999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|||++++++|+.+..|+..+.......++|+++||||+|.
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL  157 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  157 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence            99999999999999999999988876443347999999999995

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.94  E-value=6.7e-27  Score=150.89  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec-CCceEEEEEEecCCCcccccch---HHhhccC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL-DTSKTEIELWDTSGDHKFESVW---PAFQRDV   77 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~---~~~~~~~   77 (135)
                      ++||+++|++|||||||++++.+.... .  ++.+..+......... ++..+.+++||++|+++|....   ..+++++
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   96 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT   96 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence            579999999999999999988874332 2  4444433222222211 2466899999999999987776   8999999


Q ss_pred             cEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         78 HGIIFVFNSGVP--GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        78 ~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++|||+++.  +++..+..|+.++....  .+.|+++||||+|.
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl  141 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDG  141 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEecccc
Confidence            999999999997  67777888888875443  38999999999994

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=160.64  Aligned_cols=114  Identities=23%  Similarity=0.385  Sum_probs=94.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+|+|++|||||||+++|.++.+... .||.+..+..+..      ..+.++|||+||++.+..++..+++.+|+++
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEE------TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEec------CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            46999999999999999999999876543 4677776655444      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|..+..|+..+.......++|+++|+||+|.
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl  278 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL  278 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccC
Confidence            99999999999999999888877665568999999999995

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=6.6e-26  Score=145.99  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC--CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchHHhhccCc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT--AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWPAFQRDVH   78 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~   78 (135)
                      .+||+++|++|||||||++++.+...  ...+ ++.+.+++....  ..++..+.+.+||++|++. ++.+...+++.++
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTL--MVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEE--EETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEE--EECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            57999999999999999999996432  2333 345555544443  3345778889999999876 5667788899999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl  126 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  126 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence            99999999999999999999988876544457999999999995

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=8.1e-26  Score=155.08  Aligned_cols=117  Identities=16%  Similarity=0.211  Sum_probs=94.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc-----ccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF-----ESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~   73 (135)
                      ++||+++|++|||||||++++.++...   ..+.+|++..+......     ..+.+.+||+||++.+     ...+..+
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~-----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   77 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-----GNMTLNLWDCGGQDVFMENYFTKQKDHI   77 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET-----TTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC-----CceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence            689999999999999999999987433   35778888776654431     3689999999999988     7888999


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhcc-CCCCceEEEEEecCCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS-DLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~~  123 (135)
                      +++++++++|||++++++|+.+..|...+.... ..+++|+++|+||+|..
T Consensus        78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence            999999999999999999999977755443321 12479999999999953

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.94  E-value=2.5e-25  Score=143.84  Aligned_cols=118  Identities=19%  Similarity=0.307  Sum_probs=99.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.+..+...+.++.+.++.......  ++..+.+.+||++|+++++..+..+++.+++++
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~--~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE--TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            479999999999999999999999888788888887665554433  446788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++..+++++..|+..+..... .+.|+++++||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i~~v~nK~Dl  122 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDL  122 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECccc
Confidence            99999999999999999988765432 47899999999995

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=2.1e-26  Score=157.95  Aligned_cols=111  Identities=12%  Similarity=0.203  Sum_probs=86.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---chHHhhccC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---VWPAFQRDV   77 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~   77 (135)
                      ||+++|++|||||||++++.++.++.   .+.||+|.++..+       +..++++||||+|+++|+.   .+..||+++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-------~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a   73 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-------STLIDLAVMELPGQLNYFEPSYDSERLFKSV   73 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-------CSSSCEEEEECCSCSSSCCCSHHHHHHHTTC
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-------ccEEEEEEEECCCchhccchhhhhhhhccCC
Confidence            68999999999999999988765442   3678998877543       1348999999999999974   468999999


Q ss_pred             cEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         78 HGIIFVFNSGVP--GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        78 ~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +++++|||++++  +++..+..|+..+....  +++|++++|||+|..
T Consensus        74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ipillvgNK~DL~  119 (331)
T 3r7w_B           74 GALVYVIDSQDEYINAITNLAMIIEYAYKVN--PSINIEVLIHKVDGL  119 (331)
T ss_dssp             SEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCSS
T ss_pred             CEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CCCcEEEEEECcccC
Confidence            999999999997  22333334455554433  479999999999964

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.93  E-value=2.4e-25  Score=153.40  Aligned_cols=116  Identities=20%  Similarity=0.269  Sum_probs=100.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+.   .....++..+.+.+||++|++.+...+..+++++|+++
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE---EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE---EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            479999999999999999999998888888888876442   22234557788999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl  271 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP--NTPIILVGTKLDL  271 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT--TSCEEEEEECHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC--CCcEEEEEEchhc
Confidence            999999999999996 79988876654  7999999999994

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.93  E-value=1e-24  Score=140.28  Aligned_cols=118  Identities=19%  Similarity=0.296  Sum_probs=102.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .++|+++|++|||||||++++.+..++..+.++.+.++.......  ++..+.+.+||++|++++...+..+++.+++++
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~--~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE--TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            479999999999999999999999888888899998776555543  446778899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||.++..+|+++..|+..+..... .+.|+++++||+|.
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i~~v~nK~Dl  146 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDL  146 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence            99999999999999999988765432 47899999999994

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.3e-27  Score=155.04  Aligned_cols=116  Identities=20%  Similarity=0.294  Sum_probs=97.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+   ......++..+.+.+||+||++++...+..+++++|+++
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            47999999999999999999999888777777766533   222233446678899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+. .|+..+.....  +.|+++|+||+|.
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~--~~piilv~NK~Dl  146 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP--NTPIILVGTKLDL  146 (204)
Confidence            999999999999996 89888865543  7899999999995

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.93  E-value=7.2e-25  Score=142.90  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=88.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-chHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-VWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~   80 (135)
                      .+||+++|++|||||||+++++++.+...+.+ .+.++..+..  . ....+.+.+||+||++.++. ++..++++++++
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAIYKV--N-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEEEEC--S-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEEEEe--c-CCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            57999999999999999999999888766644 4444444332  1 11268999999999999987 788999999999


Q ss_pred             EEEEeCCCcc-hHHHHHHHHHHHHhc--cCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPG-HISELLLFYDYFVTQ--SDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~-s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||+++.+ ++..+..|+..+...  ....+.|+++|+||+|.
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  127 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI  127 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence            9999999854 466665554444332  12247899999999995

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2e-25  Score=143.29  Aligned_cols=110  Identities=22%  Similarity=0.278  Sum_probs=86.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhcc--
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRD--   76 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--   76 (135)
                      .++|+++|++|||||||++++.+..+..   .+.++.+..+           ....+.+||+||++.+...+..++..  
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            4699999999999999999999987543   2223322211           34578999999999998888888876  


Q ss_pred             --CcEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117         77 --VHGIIFVFNSG-VPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        77 --~~~~i~v~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~  122 (135)
                        ++++++|||++ +.+++..+..|+..+....   ...+.|+++|+||+|.
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence              89999999999 8889999999998886543   2247999999999994

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=3.6e-25  Score=144.67  Aligned_cols=110  Identities=22%  Similarity=0.278  Sum_probs=90.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhcc--
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRD--   76 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--   76 (135)
                      .++|+++|++|||||||++++.+..+..   .+.++.+..+           ....+.+||+||++.++..+..+++.  
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            4699999999999999999999987643   2333333221           45678999999999999999999987  


Q ss_pred             --CcEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117         77 --VHGIIFVFNSG-VPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        77 --~~~~i~v~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~  122 (135)
                        ++++++|||++ ++++|..+..|+.++....   ...+.|+++|+||+|.
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence              89999999999 8899999999998887653   2247999999999995

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.92  E-value=6e-26  Score=152.09  Aligned_cols=121  Identities=12%  Similarity=0.067  Sum_probs=89.1

Q ss_pred             eEEEEEECCC---------CCChHHHHHHHhc---CCCCCCccCCc-ceeEEEEEeee------------ecCCceEEEE
Q psy10117          2 KIKILILGPI---------MAGKTVLANALCD---LTTAEEYHPTQ-GVRIVECEHSY------------ALDTSKTEIE   56 (135)
Q Consensus         2 ~~ki~viG~~---------~~GKssli~~l~~---~~~~~~~~~t~-~~~~~~~~~~~------------~~~~~~~~~~   56 (135)
                      .+||+++|++         |||||||+++|++   ..+...+.++. +.++.......            ..++..+.++
T Consensus        19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~   98 (255)
T 3c5h_A           19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH   98 (255)
T ss_dssp             CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEE
T ss_pred             eeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEE
Confidence            4899999999         9999999999999   45555555554 33322211110            1234678899


Q ss_pred             EEe-----------------------cCCCcccccchHHhhc---------------------cCcEEEEEEeCCCc--c
Q psy10117         57 LWD-----------------------TSGDHKFESVWPAFQR---------------------DVHGIIFVFNSGVP--G   90 (135)
Q Consensus        57 i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~--~   90 (135)
                      |||                       ++|++++..++..+++                     ++|++++|||++++  +
T Consensus        99 i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~  178 (255)
T 3c5h_A           99 IVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNR  178 (255)
T ss_dssp             EEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----
T ss_pred             EEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchh
Confidence            999                       7788888888888887                     79999999999998  9


Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         91 HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        91 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+.+..|+..+.......++|+++|+||+|.
T Consensus       179 s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl  210 (255)
T 3c5h_A          179 NFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE  210 (255)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             hHHHHHHHHHHHHHHhccCCCCEEEEEEcccc
Confidence            99999999999876532347999999999995

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=1.8e-24  Score=136.95  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=84.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .++|+++|++|||||||++++.+..+...+.++.+.++.......    ....+.+||+||++.+...+..+++.+|+++
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV----NDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE----TTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe----CCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            469999999999999999999998887666565554443333322    2357889999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++..... ..++..+..    .+.|+++|+||+|..
T Consensus        84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~  120 (178)
T 2lkc_A           84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKP  120 (178)
T ss_dssp             EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSS
T ss_pred             EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCC
Confidence            9999988543222 223333321    368999999999964

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.91  E-value=3.7e-23  Score=130.01  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=79.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQR   75 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~   75 (135)
                      +++|+++|++|||||||++++.+..+.....++.+.+........    ....+.+||++|++.+.      .+...+++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY----NGEKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE----TTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE----CCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            579999999999999999999987665444444443332222221    23689999999998775      33456665


Q ss_pred             --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                        +++++++|+|.++.   +....|+.++..    .+.|+++|+||+|.
T Consensus        79 ~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl  120 (165)
T 2wji_A           79 NEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDL  120 (165)
T ss_dssp             HHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHH
T ss_pred             cCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHh
Confidence              89999999999874   445668877754    26899999999993

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.90  E-value=6.9e-24  Score=154.83  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=89.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEe------eeecCCceEEEEEEecCCCcccccchHHhhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEH------SYALDTSKTEIELWDTSGDHKFESVWPAFQR   75 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   75 (135)
                      ++||+++|.+|||||||++++++..+...+.+|.+.++.....      ....++..+.+.+||++|++.+......+++
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~  120 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMT  120 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence            5899999999999999999999998888888999988776532      2233345789999999999999999999999


Q ss_pred             cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         76 DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        76 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++++|||+++   ++.+..|+..+.....  +.|+++|+||+|.
T Consensus       121 ~~d~ii~V~D~s~---~~~~~~~~~~l~~~~~--~~pvilV~NK~Dl  162 (535)
T 3dpu_A          121 RSSVYMLLLDSRT---DSNKHYWLRHIEKYGG--KSPVIVVMNKIDE  162 (535)
T ss_dssp             SSEEEEEEECGGG---GGGHHHHHHHHHHHSS--SCCEEEEECCTTT
T ss_pred             CCcEEEEEEeCCC---chhHHHHHHHHHHhCC--CCCEEEEEECCCc
Confidence            9999999999875   4677889999877654  7899999999994

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.90  E-value=4.6e-23  Score=130.52  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch--------HH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW--------PA   72 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~   72 (135)
                      .+||+++|++|||||||++++.+.... ....++.+.++.......    ....+.+||++|++.+....        ..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI----DGMPLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE----TTEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE----CCeEEEEEECCCcccchhHHHHHHHHHHHH
Confidence            479999999999999999999987642 122233333332333322    23468999999987543211        23


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++|++++|||++++.+++ ...|+..+..... .+.|+++|+||+|.
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~-~~~p~ilv~NK~Dl  127 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP-AKLPITVVRNKADI  127 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC-TTCCEEEEEECHHH
T ss_pred             HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc-cCCCEEEEEECccC
Confidence            578999999999999998886 4578777765443 47899999999994

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.89  E-value=3.4e-24  Score=136.97  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=87.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC-----------CcccccchH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG-----------DHKFESVWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~   71 (135)
                      +||+++|++|||||||++++.+..+...+.++.+.....+..      .  .+.+||+||           ++.++..+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~------~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------K--NHKIIDMPGFGFMMGLPKEVQERIKDEIV   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------T--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec------C--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence            689999999999999999999988776666665544433333      1  689999999           677778888


Q ss_pred             Hhhcc-CcEEEEEEeCCCcchHHHH-HHHHHH--------HHhccCCCCceEEEEEecCCCC
Q psy10117         72 AFQRD-VHGIIFVFNSGVPGHISEL-LLFYDY--------FVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        72 ~~~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .+++. +++++++|++.+.+++.++ ..|...        +.......+.|+++|+||+|..
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI  135 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence            88887 8988899999889999887 677653        2222222478999999999953

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.89  E-value=1.8e-22  Score=125.82  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-------cccchHHhh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-------FESVWPAFQ   74 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~   74 (135)
                      .||+++|++|||||||++++.+.... ....++............    ....+.+||+||++.       +...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   77 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET----DRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL   77 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE----TTEEEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe----CCceEEEEECCCCCCccchHHHHHHHHHHHH
Confidence            58999999999999999999987643 122222222222222222    234789999999887       344556678


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +.++++++|+|.++..+.  ...|+.+....   .+.|+++|+||+|..
T Consensus        78 ~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           78 EDAEVVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDP  121 (161)
T ss_dssp             TTCSEEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSG
T ss_pred             HhCCEEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            999999999999886443  22333333332   268999999999953

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=1.5e-22  Score=129.22  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=83.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQR   75 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~   75 (135)
                      ++||+++|++|||||||++++.+..+.....++.+.+........    ....+.+||+||++.+.      .++..++.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY----NGEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE----TTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe----CCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            479999999999999999999987654444455554443333322    34789999999998875      34566665


Q ss_pred             --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                        .++++++|+|.++   ++....|+..+..    .+.|+++|+||+|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~D  123 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMD  123 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHH
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhh
Confidence              5999999999864   6777888888754    3689999999999

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.88  E-value=3.9e-22  Score=131.35  Aligned_cols=113  Identities=14%  Similarity=0.147  Sum_probs=77.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccC--CcceeEEEEEeeeecCCceEEEEEEecCCC------ccc---ccch
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHP--TQGVRIVECEHSYALDTSKTEIELWDTSGD------HKF---ESVW   70 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~------~~~---~~~~   70 (135)
                      .+||+++|++|||||||+++|++..+.....+  +..........      ....+.+||+||+      ++.   ...+
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  102 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH------KLNKYQIIDTPGLLDRAFENRNTIEMTTI  102 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE------TTEEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec------CCCeEEEEECCCCcCcccchhhhHHHHHH
Confidence            47999999999999999999998765421111  12221111111      3478999999998      331   1123


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHH--HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISE--LLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++..++++++|||++++.+|..  ...|+..+....  .+.|+++|+||+|.
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl  154 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDK  154 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGG
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCccc
Confidence            445788999999999999988752  346777765432  37899999999994

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.88  E-value=1.3e-22  Score=130.19  Aligned_cols=109  Identities=12%  Similarity=0.149  Sum_probs=75.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------CcccccchH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVWP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~   71 (135)
                      .++|+++|++|||||||++++++..+...+.++.+.+.........     ..+.+||+||          ++.+...+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----DELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-----CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            3699999999999999999999987655555555443322222111     1589999999          777777888


Q ss_pred             HhhccC---cEEEEEEeCCCcchHHHHH--HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDV---HGIIFVFNSGVPGHISELL--LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~---~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+++.+   +++++|+|++++.++....  .|+..       .+.|+++|+||+|.
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl  146 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-------YGIPVIVIATKADK  146 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGG
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEECccc
Confidence            888877   9999999999987776542  34332       36899999999995

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=2e-21  Score=134.22  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC----------CcchHHHHHHHHHHH
Q psy10117         33 PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG----------VPGHISELLLFYDYF  102 (135)
Q Consensus        33 ~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i  102 (135)
                      +|+|+....+..      ..+++++||++|+++++..|..||+++++++||||++          +.++|.+...|+..+
T Consensus       147 ~TiGi~~~~~~~------~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i  220 (340)
T 4fid_A          147 KTTGIHEYDFVV------KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI  220 (340)
T ss_dssp             CCCSCEEEEEES------SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred             ceeeeEEEEEEe------eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence            445655544444      4689999999999999999999999999999999998          778899999999999


Q ss_pred             HhccCCCCceEEEEEecCC
Q psy10117        103 VTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus       103 ~~~~~~~~~p~ivv~nK~D  121 (135)
                      .+.....+.|++|++||+|
T Consensus       221 ~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          221 MTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             HHCGGGTTSEEEEEEECHH
T ss_pred             hhhhccCCCeEEEEEECch
Confidence            8877667899999999999

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.86  E-value=7e-22  Score=132.41  Aligned_cols=108  Identities=19%  Similarity=0.087  Sum_probs=78.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----------chHH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----------VWPA   72 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~   72 (135)
                      .+|+++|.+|||||||+++|++........|+.+.+........    ....+.+||+||...+..          +...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~   77 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL----GEHLIEITDLPGVYSLVANAEGISQDEQIAAQ   77 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE----TTEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE----CCeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence            48999999999999999999987654434455554443333332    234899999999887754          4555


Q ss_pred             hh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         73 FQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        73 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      |+  +++|++++|+|.++.+++..+..|+.+       .+.|+++|+||+|
T Consensus        78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~-------~~~pvilv~NK~D  121 (256)
T 3iby_A           78 SVIDLEYDCIINVIDACHLERHLYLTSQLFE-------LGKPVVVALNMMD  121 (256)
T ss_dssp             HHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT-------SCSCEEEEEECHH
T ss_pred             HHhhCCCCEEEEEeeCCCchhHHHHHHHHHH-------cCCCEEEEEEChh
Confidence            66  899999999999986555444333322       2689999999999

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.86  E-value=2.8e-21  Score=129.59  Aligned_cols=109  Identities=23%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc------hHHhh-
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV------WPAFQ-   74 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~-   74 (135)
                      .++|+++|++|||||||+++|++..+.....|+............    ....+.+||+||...+...      ...|+ 
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY----KGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE----TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE----CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            479999999999999999999987654333344443333333221    3478999999999877653      24555 


Q ss_pred             -ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         75 -RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        75 -~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                       ..+|++++|+|.++.++   ...|..++...    +.|+++|+||+|
T Consensus        81 ~~~~d~ii~V~D~t~~~~---~~~~~~~l~~~----~~pvilv~NK~D  121 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQ---SLYLLLEILEM----EKKVILAMTAID  121 (258)
T ss_dssp             HSCCSEEEEEEETTSCHH---HHHHHHHHHTT----TCCEEEEEECHH
T ss_pred             hcCCCEEEEEeCCCchhh---HHHHHHHHHhc----CCCEEEEEECcC
Confidence             58999999999998654   34576666442    689999999999

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.86  E-value=1.9e-21  Score=131.50  Aligned_cols=109  Identities=20%  Similarity=0.167  Sum_probs=77.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----------chH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----------VWP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~   71 (135)
                      +++|+++|.+|||||||+++|++..+.....++.+..........    ....+.+||+||...+..          ...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST----TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC----SSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe----CCCceEEEECcCCCccccccccCCHHHHHHH
Confidence            689999999999999999999997654334444444433333322    235788999999887662          122


Q ss_pred             Hhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         72 AFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        72 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      .|+  +++|++++|+|.++.++...+..|+.+.       +.|+++|+||+|
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~D  123 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLD  123 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHH
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECcc
Confidence            333  6999999999998865544444444332       689999999999

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=7.8e-21  Score=130.82  Aligned_cols=84  Identities=18%  Similarity=0.256  Sum_probs=70.1

Q ss_pred             cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC----------CcchHHHHHHHHHH
Q psy10117         32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG----------VPGHISELLLFYDY  101 (135)
Q Consensus        32 ~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~  101 (135)
                      .+|+|.....+..      ..+++++||++|+++++..|..||+++++++||||++          +.++|.+...|+..
T Consensus       152 ~~TiGi~~~~~~~------~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~  225 (327)
T 3ohm_A          152 VPTTGIIEYPFDL------QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT  225 (327)
T ss_dssp             CCCCSEEEEEEEE------TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred             CceeeEEEEEEEe------eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence            3445655444443      4689999999999999999999999999999999665          66778888899999


Q ss_pred             HHhccCCCCceEEEEEecCC
Q psy10117        102 FVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus       102 i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +.+.....+.|++|++||+|
T Consensus       226 i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          226 IITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             HHTSGGGTTCEEEEEEECHH
T ss_pred             HhhhhccCCceEEEEEECch
Confidence            98776667899999999999

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.86  E-value=1.2e-20  Score=129.37  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc----------cc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE----------SV   69 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~   69 (135)
                      -.|+++|.+|||||||+++|++.....   ....|..........     +....+.+|||||...+.          ..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-----~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-----PNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-----TTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-----CCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            368999999999999999999987642   112222211111111     126789999999986554          55


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+++.+|++++|+|+++..++.....|++.+..    .+.|+++|+||+|.
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl  134 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDK  134 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGG
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccC
Confidence            66788999999999999999999888888888755    26899999999995

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.85  E-value=2e-21  Score=124.43  Aligned_cols=108  Identities=13%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------CcccccchH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVWP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~   71 (135)
                      .+||+++|++|||||||++++++... ..+.++.+.+.......     ....+.+||+||          ++.+...+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYL-----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEE-----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEE-----ECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            46999999999999999999999863 33344444322221111     122578999999          667777788


Q ss_pred             HhhccC---cEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDV---HGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~---~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+++.+   +++++|+|.++..+.  ..+..|+...       +.|+++|+||+|.
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl  145 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDK  145 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGG
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhc
Confidence            888776   999999999876443  3444555543       6899999999995

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.85  E-value=2.6e-20  Score=127.35  Aligned_cols=112  Identities=20%  Similarity=0.181  Sum_probs=77.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~   73 (135)
                      .+|+++|.+|||||||+++|++..... ...+...........  .  .....+.+|||||...        +......+
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--T--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--E--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--E--eCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            479999999999999999999987642 122211111111111  1  1457899999999876        34455667


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHH-HHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFY-DYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|+|++++.+.  ...|+ +.+....  .+.|+++|+||+|.
T Consensus        84 l~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~--~~~p~ilV~NK~Dl  129 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTP--EDELVARALKPLV--GKVPILLVGNKLDA  129 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCH--HHHHHHHHHGGGT--TTSCEEEEEECGGG
T ss_pred             HhcCCEEEEEEECCCCCCh--HHHHHHHHHHhhc--CCCCEEEEEECccc
Confidence            8999999999999887543  34555 4443332  36899999999995

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.85  E-value=2.6e-20  Score=129.63  Aligned_cols=72  Identities=17%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV----------PGHISELLLFYDYFVTQSDLNNHKCLLIDNVK  120 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  120 (135)
                      ..+.+++||++|++.++..|..||++++++|||||+++          ..+|.+...|+..+.++....+.|++||+||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            36889999999999999999999999999999999999          56799999999999887655689999999999


Q ss_pred             CC
Q psy10117        121 PG  122 (135)
Q Consensus       121 D~  122 (135)
                      |.
T Consensus       271 DL  272 (353)
T 1cip_A          271 DL  272 (353)
T ss_dssp             HH
T ss_pred             Cc
Confidence            93

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=5.1e-21  Score=129.18  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=78.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQR   75 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~   75 (135)
                      .++|+++|++|||||||+++|++........|...........    .. ...+.+||+||+..+.      .+...|+.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~----~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~   77 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV----KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL   77 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC----TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE----ec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence            4799999999999999999999876433333433332222222    12 5679999999998875      34566665


Q ss_pred             --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                        ++|++++|+|.++.++   ...|..++..    .+.|+++|+||+|
T Consensus        78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~D  118 (272)
T 3b1v_A           78 SQRADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMID  118 (272)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHH
T ss_pred             cCCCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChh
Confidence              6999999999987543   4567666654    2689999999999

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.85  E-value=2.7e-20  Score=125.04  Aligned_cols=115  Identities=19%  Similarity=0.164  Sum_probs=80.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc----
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR----   75 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----   75 (135)
                      ++||+++|++|+|||||+++|++....  ..+.++ ...........    ....+.+|||||++.+......+++    
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~----~~~~l~liDTpG~~~~~~~~~~~~~~i~~  110 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTM----GGFTINIIDTPGLVEAGYVNHQALELIKG  110 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEE----TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEE----CCeeEEEEECCCCCCcccchHHHHHHHHH
Confidence            489999999999999999999987642  222221 11111222211    4458999999999888776666654    


Q ss_pred             -----cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCC-CceEEEEEecCCC
Q psy10117         76 -----DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLN-NHKCLLIDNVKPG  122 (135)
Q Consensus        76 -----~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~-~~p~ivv~nK~D~  122 (135)
                           +++++++|++++... +... ..|++.+....+.. ..|+++|+||+|.
T Consensus       111 ~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A          111 FLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             HTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred             HHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence                 789999999998765 5444 56777776543311 2499999999995

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.84  E-value=1.5e-20  Score=126.77  Aligned_cols=110  Identities=19%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc------chHHhh-
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES------VWPAFQ-   74 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~-   74 (135)
                      .+||+++|++|||||||+++|++..+.....++.+..........    ....+.+||+||...+..      ....|+ 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY----REKEFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE----TTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE----CCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            479999999999999999999997664444555555544443332    334699999999887766      555666 


Q ss_pred             -ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         75 -RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        75 -~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                       .++|++++|+|.++.   +....|..++....   ..|+++|+||+|
T Consensus        79 ~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~---~~p~ilv~NK~D  120 (271)
T 3k53_A           79 DGNADVIVDIVDSTCL---MRNLFLTLELFEME---VKNIILVLNKFD  120 (271)
T ss_dssp             TTCCSEEEEEEEGGGH---HHHHHHHHHHHHTT---CCSEEEEEECHH
T ss_pred             ccCCcEEEEEecCCcc---hhhHHHHHHHHhcC---CCCEEEEEEChh
Confidence             689999999999874   34455555554432   389999999999

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.84  E-value=2e-20  Score=134.72  Aligned_cols=114  Identities=21%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH--------
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA--------   72 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~--------   72 (135)
                      .+||+++|++|||||||+|+|++.... ....++.+.+........    ....+.+|||||...+...++.        
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~----~g~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH----DKTMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE----TTEEEEEEC--------------------C
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----CCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            378999999999999999999987532 222232232222222222    3468999999998776644433        


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++.+|++++|+|.+++.+++++..+...+...   .+.|+++|+||+|.
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl  355 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDR  355 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTS
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCC
Confidence            678999999999999999887544333322222   16899999999995

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.83  E-value=2.3e-20  Score=123.70  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccC--CcceeEEEEEeeeecCCceEEEEEEecCCCc-----------cccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHP--TQGVRIVECEHSYALDTSKTEIELWDTSGDH-----------KFES   68 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----------~~~~   68 (135)
                      .+||+++|++|||||||++++++........+  +.+..........    ....+.||||||..           .+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW----KETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE----TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe----CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            47999999999999999999999877554433  2222222222221    34588999999932           3334


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      ....++++++++++|+|+++...  ....|+..+....+ ....|+++|+||+|.
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~  157 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDD  157 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence            44445668899999999876443  22333333322111 013599999999994

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=1.1e-19  Score=129.99  Aligned_cols=111  Identities=20%  Similarity=0.182  Sum_probs=71.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc---------cccchHH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK---------FESVWPA   72 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~   72 (135)
                      .+|+++|.++||||||+|+|++.... ....|+.+.+........    ....+.+|||+|.+.         ++.....
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW----YGKTFKLVDTCGVFDNPQDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE----TTEEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE----CCeEEEEEECCCccccccchHHHHHHHHHHH
Confidence            47999999999999999999987643 122233322222222222    334789999999764         2345667


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++|++++|+|.++..+..  ..|+..+.+.   .+.|+++|+||+|.
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~  122 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAEN  122 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCS
T ss_pred             HHHhCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCC
Confidence            899999999999998765542  2233333222   16899999999995

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.83  E-value=1.6e-20  Score=122.89  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----------cccccchH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----------HKFESVWP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~   71 (135)
                      .++|+++|++|||||||+++|++.........+.+.+......... ......+.+|||||.          +.+.....
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            3689999999999999999999986321122222221111111111 124568999999994          44456666


Q ss_pred             Hhhcc---CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRD---VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .|++.   +|++++|+|.++..+ ..-..|+..+..    .+.|+++|+||+|.
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~----~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP----TGKPIHSLLTKCDK  156 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG----GCCCEEEEEECGGG
T ss_pred             HHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh----cCCCEEEEEecccc
Confidence            77776   778999999987543 223445555543    36899999999995

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.82  E-value=4.2e-19  Score=119.67  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=77.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH-------h-
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA-------F-   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~-   73 (135)
                      .++|+++|.+|+|||||+++|++...... .+..+.+.........  .....+.+|||||...+......       + 
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~--~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEE--ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEe--eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            57999999999999999999998765311 1111111111111111  14568999999998776543322       1 


Q ss_pred             -hccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCC-CCceEEEEEecCCC
Q psy10117         74 -QRDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDL-NNHKCLLIDNVKPG  122 (135)
Q Consensus        74 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~  122 (135)
                       .+.+|++++|+|++.. ++... ..|+..+....+. ...|+++|+||+|.
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl  166 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF  166 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence             2479999999998764 45444 5777777654331 12699999999995

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=3.7e-20  Score=132.31  Aligned_cols=113  Identities=18%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc--------ccccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH--------KFESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~   73 (135)
                      ..+|+++|.+|||||||+++|++.... ...++.|.+........  ......+.+|||+|++        .++.....+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~   79 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   79 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            469999999999999999999987653 12233343222111111  1234579999999985        566677788


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|+|..++.++.  ..|+.++.+.   .+.|+++|+||+|.
T Consensus        80 ~~~ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~  123 (436)
T 2hjg_A           80 MDEADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDN  123 (436)
T ss_dssp             HHHCSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC
T ss_pred             HHhCCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccC
Confidence            99999999999998876653  3455554432   36899999999995

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.81  E-value=8.3e-20  Score=126.69  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=84.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-CCc-cCCcceeEEEEEeeeecCCceEEEEEEecCCC----cccccchHHhhc--
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-EEY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGD----HKFESVWPAFQR--   75 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~--   75 (135)
                      +|+++|.++||||||++++++..+. ..+ ..|...+...+...     ....+.+||+||.    +.++.+...|++  
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-----~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i  234 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-----DGRSFVMADLPGLIEGAHQGVGLGHQFLRHI  234 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-----SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-----CCceEEEecCCCCcccccccchhHHHHHHHH
Confidence            5889999999999999999987542 112 23333333333321     2358999999995    344555566655  


Q ss_pred             -cCcEEEEEEeCCC---cchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         76 -DVHGIIFVFNSGV---PGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        76 -~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                       .++++++|+|+++   +++++.+..|+.++..+.. ..+.|+++|+||+|.
T Consensus       235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl  286 (342)
T 1lnz_A          235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  286 (342)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence             4999999999998   7889999999999987643 357999999999995

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.81  E-value=6e-19  Score=118.19  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC-CCCCccCC-cceeEEEEEeeeecCCceEEEEEEecCCCcccccchH--------
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT-TAEEYHPT-QGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWP--------   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~--------   71 (135)
                      .++|+|+|++|||||||++++++.. +...+.++ ............    ....+.||||||...+.....        
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW----GNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE----TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe----CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            4799999999999999999999876 33333333 222222222211    346899999999766533222        


Q ss_pred             ---HhhccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         72 ---AFQRDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        72 ---~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                         .+++.+|++++|+|+++.... ..+..|+.++..... ...+++++.||+|..
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~  152 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLN  152 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGT
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccC
Confidence               267889999999999863322 223345544422111 124455555599953

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.81  E-value=4.4e-19  Score=119.84  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=74.7

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCC-CCc-------cCCcceeEEEEEeeeecCCceEEEEEEecCCCc-------c
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTA-EEY-------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-------K   65 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~   65 (135)
                      ++++|+++|.+|+|||||+|+|++.... ..+       .+|.+.+......  ..++..+.+++|||||..       .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI--KEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEE--CC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEE--ecCCeEEEEEEEECCCccccccchhh
Confidence            4689999999999999999998775543 333       5666666554444  233456799999999963       2


Q ss_pred             cccch-------HHhhcc-------------CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         66 FESVW-------PAFQRD-------------VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        66 ~~~~~-------~~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+.       ..|+..             +|+++++++.+.......-..+++.+..     ..|+++|+||+|.
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~  156 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADT  156 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCC
Confidence            33333       444443             7799999987654332333455666532     6899999999994

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.80  E-value=7e-20  Score=130.88  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----------cccccchH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----------HKFESVWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~   71 (135)
                      +||+++|.+|||||||++++++.... ....++.+.+.......  .  ....+.+|||||+          +.|...+.
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~--~--~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT--Y--NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE--E--TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE--E--CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            79999999999999999999987642 12222222222111221  1  2346899999997          44444333


Q ss_pred             -HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 -AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                       .+++.+|++++|+|++++.++... .|+..+..    .+.|+++|+||+|.
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl  298 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDA  298 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGG
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccC
Confidence             478899999999999998887765 57766643    36899999999994

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.79  E-value=3.8e-18  Score=119.16  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWP   71 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~   71 (135)
                      ++|+++|++|||||||++++.+......  ...|.+........      ....+.+|||||...+..         ...
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  241 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED------GYFRYQIIDTPGLLDRPISERNEIEKQAIL  241 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE------TTEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe------cCceEEEEeCCCccccchhhhhHHHHHHHH
Confidence            5899999999999999999998764311  12233332222211      346799999999754321         112


Q ss_pred             HhhccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+...+|++++|+|+++..  +++....|+..+.....  +.|+++|+||+|.
T Consensus       242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl  292 (357)
T 2e87_A          242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDV  292 (357)
T ss_dssp             GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECccc
Confidence            3445799999999998877  67888899998876543  7899999999995

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.79  E-value=3.7e-18  Score=120.94  Aligned_cols=114  Identities=15%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEE------------eee--------ecCCceEEEEEEecC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECE------------HSY--------ALDTSKTEIELWDTS   61 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~------------~~~--------~~~~~~~~~~i~d~~   61 (135)
                      .+||+++|++++|||||+++|++......    .+.......            ...        ........+.+||+|
T Consensus         8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            8 EVNIGVVGHVDHGKTTLVQAITGIWTSKK----LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHSCCCCSS----SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccc----cCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            47999999999999999999998543221    111100000            000        001123789999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |++.|......++..+|++++|+|+++..++.+..+|+..+....   ..|+++|+||+|.
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl  141 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDV  141 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGG
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccc
Confidence            999999999999999999999999999887888888887665432   3589999999994

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.78  E-value=3.4e-19  Score=124.60  Aligned_cols=114  Identities=17%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCc--------cCCcceeEEEEEeeeecCCceEEEEEEecCCC-------cc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEY--------HPTQGVRIVECEHSYALDTSKTEIELWDTSGD-------HK   65 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~   65 (135)
                      .++|+++|++|+|||||+++|++.... ..+        .++++.....+..  ...+..+.+++||++|.       +.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~--~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI--EERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC------CEEEEEEEEC-------------
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEe--ecCCcccceEEEEeccccccCccHHH
Confidence            689999999999999999998765332 222        2444443322222  33345678999999998       77


Q ss_pred             cccchH-------HhhccCcEE-----------EEEEeCCC-cchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         66 FESVWP-------AFQRDVHGI-----------IFVFNSGV-PGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        66 ~~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+..       .|++.++++           +++|++++ ..++..+. .|++.+.     .+.|+++|+||+|.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-----~~~piIlV~NK~Dl  186 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-----NKVNIVPVIAKADT  186 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-----S-SCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-----cCCCEEEEEECCCC
Confidence            777776       777665543           36666655 55676665 4555541     37899999999995

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.78  E-value=2.4e-19  Score=128.75  Aligned_cols=113  Identities=18%  Similarity=0.120  Sum_probs=77.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC--------CcccccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG--------DHKFESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~~   73 (135)
                      ..+|+++|.+|||||||+++|.+.... ....+.|.+.......  .......+.+|||+|        ++.++.....+
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            358999999999999999999987653 1223334332222222  222456899999999        67777788889


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|+|..+.  +.....|+.++.+.   .+.|+++|+||+|.
T Consensus       100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~  143 (456)
T 4dcu_A          100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDN  143 (456)
T ss_dssp             HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC--
T ss_pred             HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccc
Confidence            9999999999997653  44445566655443   36899999999994

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.78  E-value=2.9e-19  Score=127.69  Aligned_cols=115  Identities=15%  Similarity=0.138  Sum_probs=79.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--CCCCC-------------------------------ccCCcceeEEEEEeeeec
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--TTAEE-------------------------------YHPTQGVRIVECEHSYAL   48 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~   48 (135)
                      .+||+++|+.++|||||+++|+..  .+...                               ...|+...+..+.     
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-----   80 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-----   80 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-----
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-----
Confidence            479999999999999999999864  22110                               1122222222222     


Q ss_pred             CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhcc----CCCCceEEEEEecCCCC
Q psy10117         49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS----DLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~p~ivv~nK~D~~  123 (135)
                       .....+++||+||++.|...+..+++.+|++++|+|+++ .+|+.+..|..+...+.    ...-.|+++++||+|..
T Consensus        81 -~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           81 -TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             -CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             -cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence             245789999999999999889999999999999999998 77876554443332221    11124699999999953

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.78  E-value=9.2e-19  Score=126.51  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=74.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC--C-----------------------------C--ccCCcceeEEEEEeeeec
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA--E-----------------------------E--YHPTQGVRIVECEHSYAL   48 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~--~-----------------------------~--~~~t~~~~~~~~~~~~~~   48 (135)
                      .+||+++|.+++|||||+++|++....  .                             +  ...|+...+..+.     
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-----  107 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-----  107 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-----
Confidence            479999999999999999999865110  0                             0  0112222222222     


Q ss_pred             CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHH------HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE------LLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                       .....+.|||+||++.|......+++.+|++++|+|+++..++..      ..+.+..+ ...  ...|+++|+||+|.
T Consensus       108 -~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~--~~~~iIvviNK~Dl  183 (483)
T 3p26_A          108 -THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDN  183 (483)
T ss_dssp             -CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT--TCCCEEEEEECGGG
T ss_pred             -cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc--CCCcEEEEEECcCc
Confidence             245789999999999999999999999999999999998754322      22222222 221  23579999999995

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.78  E-value=2e-18  Score=127.05  Aligned_cols=116  Identities=16%  Similarity=0.221  Sum_probs=79.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC--CCC-----------CccCCcceeEEEEE--eeee-cCCceEEEEEEecCCCccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT--TAE-----------EYHPTQGVRIVECE--HSYA-LDTSKTEIELWDTSGDHKF   66 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~--~~~-----------~~~~t~~~~~~~~~--~~~~-~~~~~~~~~i~d~~g~~~~   66 (135)
                      .||+++|+.++|||||+++|+...  ...           ..+.+.|.++....  ..+. .++..+.+++|||||++.|
T Consensus         5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF   84 (599)
T 3cb4_D            5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF   84 (599)
T ss_dssp             EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence            589999999999999999998632  110           01122333332222  2222 1455789999999999999


Q ss_pred             ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ...+..+++.+|++++|+|+++..++.....|.....     .++|+++|+||+|..
T Consensus        85 ~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~  136 (599)
T 3cb4_D           85 SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLP  136 (599)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTST
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcc
Confidence            9999999999999999999999888888888876552     268999999999954

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.78  E-value=1.2e-18  Score=125.65  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-cccc--------chHH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-KFES--------VWPA   72 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~   72 (135)
                      ++|+++|.++||||||+|+|++.... ....+..+.+........    ....+.+|||+|.. .+..        ....
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~----~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI----RGILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE----TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec----CCeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            79999999999999999999987532 222232222222222222    34679999999987 5542        2345


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++.+|++++|+|++++.+++... +++.+      .+.|+++|+||+|.
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL  362 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDV  362 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSS
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECccc
Confidence            788999999999999988876643 22332      26899999999995

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.77  E-value=2.3e-20  Score=135.73  Aligned_cols=113  Identities=18%  Similarity=0.061  Sum_probs=83.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .++|+++|++++|||||+++|.+..+.....++++..+..+....   +....+++|||||++.|..++..+++.+|+++
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~---~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL---PSGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS---SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe---CCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            368999999999999999999987654444444444332222221   12347899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|+|+++.........| ..+.    ..+.|+++++||+|.
T Consensus        81 LVVDa~dg~~~qt~e~l-~~~~----~~~vPiIVViNKiDl  116 (537)
T 3izy_P           81 LVVAADDGVMKQTVESI-QHAK----DAHVPIVLAINKCDK  116 (537)
T ss_dssp             EECBSSSCCCHHHHHHH-HHHH----TTTCCEEECCBSGGG
T ss_pred             EEEECCCCccHHHHHHH-HHHH----HcCCcEEEEEecccc
Confidence            99999986655444333 2222    136899999999994

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.77  E-value=3.9e-19  Score=126.26  Aligned_cols=111  Identities=15%  Similarity=0.036  Sum_probs=73.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~   73 (135)
                      +++|+++|+.++|||||++++++..+. ....+..............   ....+++|||||++.+...       ...+
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~---~~~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH---PIGPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET---TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC---CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            579999999999999999999987653 1112222222222222221   1238999999999877544       3457


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|++++|+|....   .....|+..+...    +.|+++|+||+|.
T Consensus       111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl  152 (423)
T 3qq5_A          111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDV  152 (423)
T ss_dssp             HTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTT
T ss_pred             HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCC
Confidence            8899999999998332   3446677776544    6899999999994

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.77  E-value=5.3e-19  Score=126.92  Aligned_cols=110  Identities=16%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH--------
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA--------   72 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~--------   72 (135)
                      .+||+++|++|||||||+|+|++.... ....++.+.++.......    ....+.+|||+|...+....+.        
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----~g~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV----GGIPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE----TTEEEEECC--------------------C
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE----CCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence            378999999999999999999986432 222233322221111111    3467899999997665443333        


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++.+|++++|+|.+++.+... ..|++.+.      ..|+++|+||+|.
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl  342 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDL  342 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTS
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCC
Confidence            5778999999999998776544 55666552      3699999999994

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.77  E-value=1e-17  Score=119.60  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=77.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC---CC---------ccCC-----------------------cceeEEEEEeeee
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA---EE---------YHPT-----------------------QGVRIVECEHSYA   47 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~---~~---------~~~t-----------------------~~~~~~~~~~~~~   47 (135)
                      +||+++|+.++|||||+++|++....   ..         ...+                       +...+..+     
T Consensus        25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~-----   99 (434)
T 1zun_B           25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF-----   99 (434)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-----
T ss_pred             eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-----
Confidence            79999999999999999999865411   00         0011                       11111111     


Q ss_pred             cCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         48 LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        48 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                       ......+.+||+||++.|...+..+++.+|++++|+|+++... ....+|+..+... +  ..|+++|+||+|..
T Consensus       100 -~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~--~~~iIvviNK~Dl~  170 (434)
T 1zun_B          100 -STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G--IKHIVVAINKMDLN  170 (434)
T ss_dssp             -ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T--CCEEEEEEECTTTT
T ss_pred             -ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C--CCeEEEEEEcCcCC
Confidence             1245689999999999998888889999999999999988653 3445555544322 1  24799999999963

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.77  E-value=5.3e-18  Score=124.76  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC--CCC-----C------ccCCcceeEEE--EEeeee-cCCceEEEEEEecCCCccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT--TAE-----E------YHPTQGVRIVE--CEHSYA-LDTSKTEIELWDTSGDHKF   66 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~--~~~-----~------~~~t~~~~~~~--~~~~~~-~~~~~~~~~i~d~~g~~~~   66 (135)
                      .+|+++|+.++|||||+++|+...  ...     .      .+...|.++..  ....+. .++..+.+++|||||++.|
T Consensus         7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF   86 (600)
T 2ywe_A            7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF   86 (600)
T ss_dssp             EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence            589999999999999999998631  110     0      01112222211  111111 1345689999999999999


Q ss_pred             ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ...+..+++.+|++++|+|+++..++.....|.....     .++|+++|+||+|..
T Consensus        87 ~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~  138 (600)
T 2ywe_A           87 SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLP  138 (600)
T ss_dssp             HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTST
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCcc
Confidence            9999999999999999999999888888887766542     268999999999954

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.77  E-value=8.4e-18  Score=119.14  Aligned_cols=115  Identities=16%  Similarity=0.129  Sum_probs=80.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--------CCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--------TTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF   66 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   66 (135)
                      .+||+++|++++|||||+++|++.        .+...       .+.+.|.++........  .....+.+||+||++.|
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE--TAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE--CSSCEEEEEECCCSGGG
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec--cCCeEEEEEECCChHHH
Confidence            479999999999999999999873        11100       00112222111111111  24568999999999999


Q ss_pred             ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCCC
Q psy10117         67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPGR  123 (135)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~  123 (135)
                      ......+++.+|++++|+|+++... ....+|+..+...    ++| +++++||+|..
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~Dl~  141 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVDMV  141 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGGGC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECcccc
Confidence            8888899999999999999988654 4456666655432    567 89999999953

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.76  E-value=2.7e-19  Score=129.19  Aligned_cols=112  Identities=14%  Similarity=0.049  Sum_probs=78.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      .+|+++|+.++|||||+++|.+........+++..+...+....    ....+++|||||++.|..++...++.+|++++
T Consensus         5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~----~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET----ENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT----TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE----CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            57999999999999999999976544333333332222222211    23478999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |+|+++........ ++..+..    .+.|+++++||+|..
T Consensus        81 VVda~~g~~~qT~e-~l~~~~~----~~vPiIVviNKiDl~  116 (501)
T 1zo1_I           81 VVAADDGVMPQTIE-AIQHAKA----AQVPVVVAVNKIDKP  116 (501)
T ss_dssp             EEETTTBSCTTTHH-HHHHHHH----TTCCEEEEEECSSSS
T ss_pred             EeecccCccHHHHH-HHHHHHh----cCceEEEEEEecccc
Confidence            99998843221122 2222211    268999999999953

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.76  E-value=9.2e-19  Score=128.89  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=79.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC----ccCCcceeEEEEEeee---e---c----CCceEEEEEEecCCCccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE----YHPTQGVRIVECEHSY---A---L----DTSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~---~---~----~~~~~~~~i~d~~g~~~~~~   68 (135)
                      ++|+++|+.++|||||+++|.+......    ..++++..+..+....   .   .    +.....+++|||||++.|..
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~   85 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence            6899999999999999999987644321    2234444332221100   0   0    01123699999999999999


Q ss_pred             chHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++..+++.+|++++|+|+++   +++++.+..+    ..    .+.|+++++||+|.
T Consensus        86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~----~~vPiIVViNKiDl  134 (594)
T 1g7s_A           86 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM----YRTPFVVAANKIDR  134 (594)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH----TTCCEEEEEECGGG
T ss_pred             HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH----cCCeEEEEeccccc
Confidence            99999999999999999998   5566544422    11    26899999999995

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.76  E-value=8.6e-18  Score=122.39  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC-----------------CCC-------ccCCcceeEEEEEeeeecCCceEEEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT-----------------AEE-------YHPTQGVRIVECEHSYALDTSKTEIEL   57 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~-----------------~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i   57 (135)
                      ..+|+++|++++|||||+++|+...-                 ..+       ...|+......+..      ....+++
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~------~~~~i~l   86 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY------KDYLINL   86 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE------TTEEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe------CCEEEEE
Confidence            35899999999999999999962110                 000       11122222222222      4678999


Q ss_pred             EecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        58 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |||||++.|......+++.+|++++|+|.++..+......|. .+..    .++|+++|+||+|..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~  147 (528)
T 3tr5_A           87 LDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRD  147 (528)
T ss_dssp             ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSC
T ss_pred             EECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCc
Confidence            999999999999999999999999999999887776666553 3322    268999999999953

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.76  E-value=2e-18  Score=121.03  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=78.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      +|+++|++++|||||+++|+      ....|++..+..+..      ....+++||+||++.|.......++.+|++++|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~------~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDK------EGRNMVFVDAHSYPKTLKSLITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECS------SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEec------CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence            89999999999999999998      233455554443332      445799999999999988888889999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEe-cCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDN-VKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~n-K~D~  122 (135)
                      +| + ...+.+..+|+..+...    +.|. +++.| |+|.
T Consensus        91 vd-~-~g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           91 IP-P-QGLDAHTGECIIALDLL----GFKHGIIALTRSDST  125 (370)
T ss_dssp             EC-T-TCCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS
T ss_pred             Ec-C-CCCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC
Confidence            99 4 44566677777665432    4566 88888 9997

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.76  E-value=6.6e-18  Score=123.03  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=76.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC--------------------CccCCcceeEEEEEeeeecCCceEEEEEEecC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE--------------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTS   61 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~   61 (135)
                      ..+|+++|++++|||||+++|+...-..                    ....+.|.+......  ........+++||||
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVM--QFPYHDCLVNLLDTP   90 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEE--EEEETTEEEEEECCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEE--EEEECCeEEEEEECC
Confidence            4689999999999999999998631100                    001112221110000  111145789999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |++.|......+++.+|++++|+|+++.... ....++..+    ...++|+++|+||+|..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~----~~~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT----RLRDTPILTFMNKLDRD  147 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH----TTTTCCEEEEEECTTSC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH----HHcCCCEEEEEcCcCCc
Confidence            9999998889999999999999999876432 222333332    22478999999999954

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.76  E-value=4.2e-18  Score=121.79  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=76.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-------------------------------CCccCCcceeEEEEEeeeecCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-------------------------------EEYHPTQGVRIVECEHSYALDT   50 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~   50 (135)
                      .+||+++|.+++|||||+++|+...-.                               .+..+.++.+.....+.    .
T Consensus        17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~----~   92 (439)
T 3j2k_7           17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE----T   92 (439)
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe----c
Confidence            379999999999999999999653210                               00112222222222221    1


Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcch---HH---HHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH---IS---ELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ....+.+||+||++.|...+..+++.+|++++|+|+++...   |+   ...+.+..+..    .+.| +++|+||+|.
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDD  167 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCC
Confidence            45689999999999999989999999999999999988632   22   22333333221    1455 9999999996

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.76  E-value=9.3e-18  Score=114.76  Aligned_cols=109  Identities=21%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-C--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-c--------cccch
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-E--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-K--------FESVW   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~--------~~~~~   70 (135)
                      .+|+++|++|||||||++++++..... .  ...|... ...+ .  .  .....+.+|||||.+ .        +....
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~-~~gi-~--~--~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGI-H--T--EGAYQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC-EEEE-E--E--ETTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee-EEEE-E--E--ECCeeEEEEECcCCCccchhhHHHHHHHHH
Confidence            479999999999999999999876431 1  1112111 1111 1  1  135689999999987 2        33344


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..+++.+|++++|+|.++   +.....|+.+....   .+.|+++++||+|..
T Consensus        83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNV  129 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTC
T ss_pred             HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccC
Confidence            566789999999999976   44445565554332   368999999999964

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.76  E-value=1.1e-17  Score=117.98  Aligned_cols=84  Identities=21%  Similarity=0.294  Sum_probs=73.3

Q ss_pred             CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC----------cchHHHHHHHHHHH
Q psy10117         33 PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV----------PGHISELLLFYDYF  102 (135)
Q Consensus        33 ~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i  102 (135)
                      +|+|+....+..      ..+.+++||++|+++++..|..||++++++|||||+++          .++|+++..|+..+
T Consensus       203 ~TiGi~~~~~~~------~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i  276 (402)
T 1azs_C          203 LTSGIFETKFQV------DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI  276 (402)
T ss_dssp             CCCSEEEEEEEE------TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH
T ss_pred             ceeeeEEEEeec------CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHH
Confidence            466766544444      35899999999999999999999999999999999999          88999999999999


Q ss_pred             HhccCCCCceEEEEEecCCC
Q psy10117        103 VTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus       103 ~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+.....++|++|||||+|.
T Consensus       277 ~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          277 WNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             HTCTTCSSCCEEEEEECHHH
T ss_pred             HhcccCCCCeEEEEEEChhh
Confidence            88765568999999999993

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.76  E-value=1.1e-18  Score=125.62  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--CCCC-------------------------------CccCCcceeEEEEEeeeec
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--TTAE-------------------------------EYHPTQGVRIVECEHSYAL   48 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~   48 (135)
                      .+||+++|+.++|||||+++|+..  .+..                               ....|++..+..+..    
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~----  118 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET----  118 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC----
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec----
Confidence            369999999999999999999742  1110                               012233322222222    


Q ss_pred             CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCce-EEEEEecCCCC
Q psy10117         49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPGR  123 (135)
Q Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~  123 (135)
                        ....+.|||+||++.|...+...++.+|++++|+|+++.   .+|+....|.+.+..... .++| +++++||+|..
T Consensus       119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGINHLVVVINKMDEP  194 (467)
T ss_dssp             --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCSSEEEEEECTTST
T ss_pred             --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCCEEEEEEECccCC
Confidence              357899999999999998888899999999999999986   344322222222211111 2566 99999999963

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.75  E-value=1.8e-17  Score=117.52  Aligned_cols=118  Identities=17%  Similarity=0.189  Sum_probs=76.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC---CCCCccC--CcceeEEEEEeeee-----------cC--C----ceEEEEEEe
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT---TAEEYHP--TQGVRIVECEHSYA-----------LD--T----SKTEIELWD   59 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~~-----------~~--~----~~~~~~i~d   59 (135)
                      .+||+++|+.++|||||+++|.+..   +..+..+  |++..+........           .+  +    ....+.+||
T Consensus         8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   87 (408)
T 1s0u_A            8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD   87 (408)
T ss_dssp             CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence            4799999999999999999998542   2223333  55554443333110           01  1    137899999


Q ss_pred             cCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||++.|.......+..+|++++|+|+++........+++..+...   ...|+++++||+|.
T Consensus        88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl  147 (408)
T 1s0u_A           88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDL  147 (408)
T ss_dssp             CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTS
T ss_pred             CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCC
Confidence            9999998877777778899999999998643222222222222211   13589999999995

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.75  E-value=1.1e-17  Score=116.93  Aligned_cols=110  Identities=23%  Similarity=0.190  Sum_probs=71.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCc---------ccccchHHh
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH---------KFESVWPAF   73 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~   73 (135)
                      |+++|++|||||||++++.+.....  ...+|.+.....+..      ....+.+|||+|.-         .|+..+ ..
T Consensus       182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~------~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI------NNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE------TTEEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE------CCEEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            8999999999999999999876532  223333332222222      22578999999962         122222 24


Q ss_pred             hccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+|.+++|+|++++.  ..+.+..|.+.+... ...+.|+++|+||+|.
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl  304 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDK  304 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGG
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCC
Confidence            67899999999999877  556666565544332 2347899999999994

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.75  E-value=3.6e-18  Score=126.26  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=76.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC---------------------------------ccCCcceeEEEEEeeeec
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE---------------------------------YHPTQGVRIVECEHSYAL   48 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~~~   48 (135)
                      .+||+++|++++|||||+++|++....-.                                 ...|+...+..+..    
T Consensus       167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~----  242 (611)
T 3izq_1          167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST----  242 (611)
T ss_dssp             CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC----
T ss_pred             ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec----
Confidence            47999999999999999999987532110                                 01122222222222    


Q ss_pred             CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                        ....+.||||||++.|......+++.+|++++|+|+++..   +|   ......+..+. .  ....|+++|+||+|.
T Consensus       243 --~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~--lgi~~iIVVvNKiDl  317 (611)
T 3izq_1          243 --HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-S--LGIHNLIIAMNKMDN  317 (611)
T ss_dssp             --SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-T--TTCCEEEEEEECTTT
T ss_pred             --CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-H--cCCCeEEEEEecccc
Confidence              4568999999999999988888999999999999998742   11   11222222221 1  223569999999995


Q ss_pred             C
Q psy10117        123 R  123 (135)
Q Consensus       123 ~  123 (135)
                      .
T Consensus       318 ~  318 (611)
T 3izq_1          318 V  318 (611)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.75  E-value=5.9e-18  Score=121.53  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=75.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------Ccccccch
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVW   70 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~   70 (135)
                      .+||+++|.+++|||||++++++.... ....++.+.+........    ....+++|||||          ++.|....
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~----~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY----NQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE----TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE----CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            379999999999999999999976421 111222222211111211    334899999999          67776665


Q ss_pred             HH-hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PA-FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .. +++.+|++++|+|+++..+ +....|+..+..    .+.|+++|+||+|.
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl  318 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDA  318 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhc
Confidence            54 7789999999999987543 333455555543    36899999999994

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.75  E-value=1.2e-17  Score=118.17  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=77.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC-------CCC-------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT-------TAE-------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .+||+++|+.++|||||+++|++..       +..       ..+...|.+.......  .+.....+.+||+||++.|.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~--~~~~~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE--YSTAARHYAHTDCPGHADYV   80 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEE--EECSSCEEEEEECSSHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEE--eccCCeEEEEEECCChHHHH
Confidence            4799999999999999999998741       110       0011222222111111  11245689999999999998


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      .....+++.+|++++|+|+++........ ++..+..    .++| +++++||+|.
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~----~~vp~iivviNK~Dl  131 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ----IGVEHVVVYVNKADA  131 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCCEEEEEECGGG
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCeEEEEEECccc
Confidence            88888999999999999999865433333 3343322    2577 7899999995

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.75  E-value=2.6e-17  Score=116.77  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC---CCCCccC--CcceeEEEEEeeee-----------cC--C----ceEEEEEEe
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT---TAEEYHP--TQGVRIVECEHSYA-----------LD--T----SKTEIELWD   59 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~~-----------~~--~----~~~~~~i~d   59 (135)
                      .++|+++|+.++|||||+++|++..   ...+..+  |+...+........           .+  +    ....+++||
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            4799999999999999999998542   2223333  55544443333110           00  1    137899999


Q ss_pred             cCCCcccccchHHhhccCcEEEEEEeCCCcc----hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||++.|.......+..+|++++|+|+++..    +.+.+..|    ... +  ..|+++|+||+|.
T Consensus        90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~--~~~iivviNK~Dl  149 (410)
T 1kk1_A           90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-G--QKNIIIAQNKIEL  149 (410)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-T--CCCEEEEEECGGG
T ss_pred             CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-C--CCcEEEEEECccC
Confidence            9999998877777788899999999998643    34433322    211 1  3589999999995

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.74  E-value=1.8e-17  Score=124.13  Aligned_cols=111  Identities=22%  Similarity=0.156  Sum_probs=80.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC--CC------C------------CccCCcceeEEEEEeeeecCCceEEEEEEecC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT--TA------E------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTS   61 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~--~~------~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~   61 (135)
                      ..+|+++|+.|+|||||+++|+...  ..      .            ....|+......+..      ....+++||||
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~------~~~~i~liDTP   85 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW------KDHRINIIDTP   85 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE------TTEEEEEECCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE------CCeEEEEEECc
Confidence            3689999999999999999998421  10      0            112333322222222      35789999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |+..|...+..+++.+|++++|+|.++..++.....|.. +..    .+.|+++|+||+|..
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~  142 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKT  142 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTST
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcc
Confidence            999999999999999999999999999888777666654 322    268999999999953

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.74  E-value=1.5e-17  Score=126.69  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=84.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC------------CCC------CccCCcceeEEEEEeee----------ecCCceEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT------------TAE------EYHPTQGVRIVECEHSY----------ALDTSKTE   54 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~------------~~~------~~~~t~~~~~~~~~~~~----------~~~~~~~~   54 (135)
                      .||+|+|+.++|||||+++|+...            +.+      ....|+......+.+..          ..++....
T Consensus        20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (842)
T 1n0u_A           20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   99 (842)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence            589999999999999999998641            100      01123332222222221          12345789


Q ss_pred             EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|||||+..|...+..+++.+|++++|+|+++..++.....|.... .    .+.|+++|+||+|.
T Consensus       100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~  162 (842)
T 1n0u_A          100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDR  162 (842)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHH
T ss_pred             EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCc
Confidence            999999999999999999999999999999999998887776665433 2    26899999999994

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.74  E-value=1.4e-17  Score=113.33  Aligned_cols=115  Identities=13%  Similarity=0.094  Sum_probs=74.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC------ccCCc-----------------ceeEEEE-----------------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE------YHPTQ-----------------GVRIVEC-----------------   42 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~------~~~t~-----------------~~~~~~~-----------------   42 (135)
                      ++|+++|.+|||||||+++|++..+.+.      ..|+.                 |..+.+.                 
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~  106 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence            5899999999999999999999876321      11210                 0000000                 


Q ss_pred             ---------EeeeecCCceEEEEEEecCCCc-------------ccccchHHhhccCcEEE-EEEeCCCcchHHHHHHHH
Q psy10117         43 ---------EHSYALDTSKTEIELWDTSGDH-------------KFESVWPAFQRDVHGII-FVFNSGVPGHISELLLFY   99 (135)
Q Consensus        43 ---------~~~~~~~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~   99 (135)
                               ..... ......+.+|||||..             .+..+...|++.+++++ +|+|.++..+......|+
T Consensus       107 ~~gi~~~~~~~~~~-~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~  185 (299)
T 2aka_B          107 NKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             TTCCCSCCEEEEEE-ETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCCccccceEEEEe-CCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence                     00000 0113689999999953             34556677888888776 799998765544444555


Q ss_pred             HHHHhccCCCCceEEEEEecCCC
Q psy10117        100 DYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus       100 ~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+..    .+.|+++|+||+|.
T Consensus       186 ~~~~~----~~~~~i~V~NK~Dl  204 (299)
T 2aka_B          186 KEVDP----QGQRTIGVITKLDL  204 (299)
T ss_dssp             HHHCT----TCSSEEEEEECGGG
T ss_pred             HHhCC----CCCeEEEEEEcccc
Confidence            55532    36899999999994

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.74  E-value=4.7e-18  Score=122.74  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC-------CCCCcc--CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT-------TAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA   72 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~-------~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   72 (135)
                      .++|+++|+.++|||||+++|.+..       ...+..  .|+...+..+..      ....+.+||+||++.|......
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~------~~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL------ENYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE------TTEEEEECCCSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE------CCEEEEEEECCChHHHHHHHHH
Confidence            4799999999999999999999865       111111  233332223322      3478999999999999888888


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +++.+|++++|+|+++... ....+++..+..    .++|.++|+||+|..
T Consensus        93 ~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~----~~ip~IvviNK~Dl~  138 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPK-TQTGEHMLILDH----FNIPIIVVITKSDNA  138 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCBCEEEECTTSS
T ss_pred             HHhhCCEEEEEEecCCCcc-HHHHHHHHHHHH----cCCCEEEEEECCCcc
Confidence            9999999999999987321 112222222222    257889999999953

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.73  E-value=6.8e-18  Score=121.24  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC--CCC-------------------------------CccCCcceeEEEEEeeeec
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT--TAE-------------------------------EYHPTQGVRIVECEHSYAL   48 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~--~~~-------------------------------~~~~t~~~~~~~~~~~~~~   48 (135)
                      .++|+++|.+++|||||+++|++..  +..                               ....|+...+..+..    
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~----   82 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET----   82 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC----
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec----
Confidence            3799999999999999999998641  110                               012333333333322    


Q ss_pred             CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hHH---HHHHHHHHHHhccCCCCc-eEEEEEecCC
Q psy10117         49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HIS---ELLLFYDYFVTQSDLNNH-KCLLIDNVKP  121 (135)
Q Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~-p~ivv~nK~D  121 (135)
                        ....+.+||+||++.|......+++.+|++++|+|+++..   +|+   ...+++..+..    .++ ++++|+||+|
T Consensus        83 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~D  156 (458)
T 1f60_A           83 --PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMD  156 (458)
T ss_dssp             --SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGG
T ss_pred             --CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccc
Confidence              4578999999999999988889999999999999998752   332   33333333322    145 4999999999


Q ss_pred             CC
Q psy10117        122 GR  123 (135)
Q Consensus       122 ~~  123 (135)
                      ..
T Consensus       157 l~  158 (458)
T 1f60_A          157 SV  158 (458)
T ss_dssp             GG
T ss_pred             cc
Confidence            63

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.72  E-value=1.6e-17  Score=107.72  Aligned_cols=108  Identities=16%  Similarity=0.175  Sum_probs=66.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----------cccchHH
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----------FESVWPA   72 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~   72 (135)
                      .+|+++|++|||||||++++++..+...+.++.|...........   .  .+.+||+||...          ++.....
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA---D--GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE---T--TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec---C--CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            589999999999999999999876444445555543322111111   1  478999999742          2333344


Q ss_pred             hh---ccCcEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQ---RDVHGIIFVFNSGVPGHIS--ELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~---~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++   ..++++++++|++++.++.  .+..|+..       .+.|+++++||+|.
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~  149 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADK  149 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGG
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccC
Confidence            55   4689999999998876653  23444432       26899999999994

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=7.5e-17  Score=120.78  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=79.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC--CCCC-----------C-------ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL--TTAE-----------E-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~--~~~~-----------~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g   62 (135)
                      .+|+++|.+|+|||||+++|+..  ....           +       ...|+......+..      ....+++|||||
T Consensus        11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~------~~~~i~liDTPG   84 (693)
T 2xex_A           11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW------EGHRVNIIDTPG   84 (693)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE------TTEEEEEECCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE------CCeeEEEEECcC
Confidence            68999999999999999999852  2110           0       11122211111111      357899999999


Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +..|......+++.+|++++|+|.++..++.....|.. +..    .+.|+++|+||+|..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~  140 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKL  140 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTST
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCcc
Confidence            99999999999999999999999998877766665543 332    268999999999953

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.71  E-value=3.8e-17  Score=113.80  Aligned_cols=72  Identities=18%  Similarity=0.255  Sum_probs=64.0

Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC----------CcchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG----------VPGHISELLLFYDYFVTQSDLNNHKCLLIDNVK  120 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  120 (135)
                      ..+.+++||++|+++++..|..||+++++++||||++          +.++|+++..|++.+.+.....+.|++|||||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          788999999999999876555689999999999


Q ss_pred             CC
Q psy10117        121 PG  122 (135)
Q Consensus       121 D~  122 (135)
                      |.
T Consensus       261 DL  262 (354)
T 2xtz_A          261 DI  262 (354)
T ss_dssp             HH
T ss_pred             ch
Confidence            93

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.71  E-value=5.8e-17  Score=111.12  Aligned_cols=66  Identities=14%  Similarity=0.095  Sum_probs=44.9

Q ss_pred             EEEEEEecCCCcc-------------cccchHHhhccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117         53 TEIELWDTSGDHK-------------FESVWPAFQRDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDN  118 (135)
Q Consensus        53 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~n  118 (135)
                      ..+.+|||||...             +......+++++|++++|+|.++.... .....++..+.    ..+.|+++|+|
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~N  206 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVIT  206 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEc
Confidence            5799999999753             445566788999999999997543311 11123333332    13689999999


Q ss_pred             cCCC
Q psy10117        119 VKPG  122 (135)
Q Consensus       119 K~D~  122 (135)
                      |+|.
T Consensus       207 K~Dl  210 (315)
T 1jwy_B          207 KLDL  210 (315)
T ss_dssp             CTTS
T ss_pred             Cccc
Confidence            9995

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.71  E-value=3.2e-17  Score=119.96  Aligned_cols=115  Identities=22%  Similarity=0.206  Sum_probs=79.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeee--------------------------------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYA--------------------------------   47 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~--------------------------------   47 (135)
                      .+|+|+|.+|+|||||+|+|++....   ....++... .........                                
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~  144 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM  144 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence            68999999999999999999998753   222222211 001100000                                


Q ss_pred             ---cCC-ceEEEEEEecCCCcc-----------cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce
Q psy10117         48 ---LDT-SKTEIELWDTSGDHK-----------FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK  112 (135)
Q Consensus        48 ---~~~-~~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  112 (135)
                         .+. ....+.+|||||...           |......++..+|++++|+|.++.........|+..+..    ...|
T Consensus       145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~p  220 (550)
T 2qpt_A          145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDK  220 (550)
T ss_dssp             EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGG
T ss_pred             EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCC
Confidence               000 003589999999764           445666788999999999999886666777788777643    2579


Q ss_pred             EEEEEecCCC
Q psy10117        113 CLLIDNVKPG  122 (135)
Q Consensus       113 ~ivv~nK~D~  122 (135)
                      +++|+||+|.
T Consensus       221 vilVlNK~Dl  230 (550)
T 2qpt_A          221 IRVVLNKADM  230 (550)
T ss_dssp             EEEEEECGGG
T ss_pred             EEEEEECCCc
Confidence            9999999995

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.71  E-value=6.5e-17  Score=112.95  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             HHHHhcCCCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC---
Q psy10117         19 ANALCDLTTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV---   88 (135)
Q Consensus        19 i~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~---   88 (135)
                      +.++....+.++       ..+|+|+....+..      ..+.+++||++|++.++..|..+|++++++|||||+++   
T Consensus       166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~------~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq  239 (362)
T 1zcb_A          166 LDKLGVPDYIPSQQDILLARRPTKGIHEYDFEI------KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQ  239 (362)
T ss_dssp             HHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEE------TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTC
T ss_pred             HHHHhcCCCCCChhhhhhccCCccceEEEEeee------CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccc
Confidence            445555444433       44677876655554      46899999999999999999999999999999999999   


Q ss_pred             -------cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         89 -------PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        89 -------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                             ..+|.+...|+..+.+.....+.|++|++||+|.
T Consensus       240 ~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL  280 (362)
T 1zcb_A          240 VLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL  280 (362)
T ss_dssp             EETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred             cccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence                   7799999999999987765568999999999993

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.70  E-value=1.4e-16  Score=113.86  Aligned_cols=111  Identities=17%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc------------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV------------   69 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------   69 (135)
                      +||+++|++|||||||++++++.... ....++.+.+........    ....+.+||++|..+....            
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~----~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI----DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE----TTEEEEESSCSCC-----------CCSCCHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE----CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            79999999999999999999987542 111122111111111211    2336899999997543221            


Q ss_pred             hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+++.++++++++|.++..+....  ++......   .+.|+++|+||+|.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl  304 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDL  304 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccC
Confidence            12467789999999999987665542  22222222   26899999999995

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.70  E-value=2.1e-16  Score=110.39  Aligned_cols=115  Identities=12%  Similarity=0.060  Sum_probs=74.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCccee---------------EEEE--------------------------
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVR---------------IVEC--------------------------   42 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~---------------~~~~--------------------------   42 (135)
                      +|+|+|++|||||||++++++..+.+.....+...               +..+                          
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  115 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRET  115 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhc
Confidence            79999999999999999999977632221111100               0000                          


Q ss_pred             -----------EeeeecCCceEEEEEEecCCCccc-------------ccchHHhhccCcEEEEEEeCCCcchHHHHHHH
Q psy10117         43 -----------EHSYALDTSKTEIELWDTSGDHKF-------------ESVWPAFQRDVHGIIFVFNSGVPGHISELLLF   98 (135)
Q Consensus        43 -----------~~~~~~~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~   98 (135)
                                 ..... .+....+.+||+||...+             ..+...|+++++++++++|..+.....  ..|
T Consensus       116 g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~  192 (360)
T 3t34_A          116 GRSKAISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA  192 (360)
T ss_dssp             CTTCCCCCSCEEEEEE-ETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred             CCCCCcccceEEEEEe-CCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence                       00000 012346899999998776             556777899999999999876554332  334


Q ss_pred             HHHHHhccCCCCceEEEEEecCCC
Q psy10117         99 YDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        99 ~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..+..... .+.|+++|+||+|.
T Consensus       193 ~~l~~~~~~-~~~~~i~V~nK~Dl  215 (360)
T 3t34_A          193 IKISREVDP-SGDRTFGVLTKIDL  215 (360)
T ss_dssp             HHHHHHSCT-TCTTEEEEEECGGG
T ss_pred             HHHHHHhcc-cCCCEEEEEeCCcc
Confidence            433332222 36799999999993

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.69  E-value=3.5e-16  Score=117.34  Aligned_cols=116  Identities=17%  Similarity=0.035  Sum_probs=79.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC--CCC-----------C-------ccCCcceeEEEEEeee-ecCCceEEEEEEecC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT--TAE-----------E-------YHPTQGVRIVECEHSY-ALDTSKTEIELWDTS   61 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~--~~~-----------~-------~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~   61 (135)
                      .+|+++|..++|||||+++|+...  ...           +       ...|+......+.... ..++..+.++|||||
T Consensus        11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP   90 (704)
T 2rdo_7           11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP   90 (704)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence            589999999999999999997431  110           0       1112221111111110 012345899999999


Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      |+..|......+++.+|++++|+|.++.........|. .+..    .++|+++|+||+|..
T Consensus        91 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           91 GHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRM  147 (704)
T ss_pred             CccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCcc
Confidence            99999999999999999999999999876655544443 2221    268999999999943

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.68  E-value=1.6e-16  Score=119.07  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             EEEEEEecCCCcc---cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         53 TEIELWDTSGDHK---FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.+|||||...   .......+++++|++++|+|.+++.+......|...+..    .+.|+++|+||+|.
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl  242 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQ  242 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGG
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECccc
Confidence            3689999999654   344556788999999999999988888777777655422    25689999999994

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.68  E-value=1.9e-16  Score=122.69  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCC-------CC-----C--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLT-------TA-----E--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~-------~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      .+||+++|+.++|||||+++|.+..       +.     +  ..+.+.|.++.....  ..+.....+++|||||++.|.
T Consensus       296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v--~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV--EYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCE--EEECSSCEEEEEECCCHHHHH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEE--EEcCCCEEEEEEECCChHHHH
Confidence            3799999999999999999998741       00     0  112233332211111  112245789999999999998


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPGR  123 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~  123 (135)
                      .....+++.+|++++|+|+++... .+..+|+..+...    ++| +++++||+|..
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l----gIP~IIVVINKiDLv  425 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV----GVPYIIVFLNKCDMV  425 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH----TCSCEEEEEECCTTC
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc----CCCeEEEEEeecccc
Confidence            888889999999999999998653 3344555544332    567 89999999963

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.67  E-value=1.9e-16  Score=111.91  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC------ccCCcceeEEEEEeee--------------ecCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE------YHPTQGVRIVECEHSY--------------ALDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~--------------~~~~~~~~~~i~d~~g   62 (135)
                      +||+++|.++||||||++++++......      ..++.+..+.....+.              ..+...+.+.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763211      1223332211111000              0111247899999999


Q ss_pred             Ccc----cccchH---HhhccCcEEEEEEeCCCc
Q psy10117         63 DHK----FESVWP---AFQRDVHGIIFVFNSGVP   89 (135)
Q Consensus        63 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~   89 (135)
                      ...    .+.+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    232333   346899999999999875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.67  E-value=2.2e-15  Score=105.00  Aligned_cols=88  Identities=23%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC-c-cCCcceeEEEEEeeee--------cC---CceEEEEEEecCCCcccc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE-Y-HPTQGVRIVECEHSYA--------LD---TSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~--------~~---~~~~~~~i~d~~g~~~~~   67 (135)
                      |.++|+++|.+|||||||++++++..+... + ..|++.+.......-.        ..   .....+++||+||..++.
T Consensus         1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            678999999999999999999998663211 1 1233332222222100        00   012579999999987653


Q ss_pred             ----cc---hHHhhccCcEEEEEEeCCC
Q psy10117         68 ----SV---WPAFQRDVHGIIFVFNSGV   88 (135)
Q Consensus        68 ----~~---~~~~~~~~~~~i~v~d~~~   88 (135)
                          .+   ...+++++|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                22   2335789999999999986

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.67  E-value=7e-16  Score=115.14  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=79.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC-------------ccC---CcceeEEEEEeeeecCCceEEEEEEecCCCccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE-------------YHP---TQGVRIVECEHSYALDTSKTEIELWDTSGDHKF   66 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~-------------~~~---t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   66 (135)
                      .+|+++|++|+|||||+++|++......             +.+   ..+.++........  ...+.+++||+||++.|
T Consensus        10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~--~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A           10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL--FRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE--ETTEEEEEEECCCSGGG
T ss_pred             cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe--eCCEEEEEEeCCCccch
Confidence            4899999999999999999995432210             000   11222211111111  14678999999999999


Q ss_pred             ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ......+++.+|++++|+|.++..... ...++..+..    .+.|+++|+||+|..
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            999999999999999999987764432 3345554433    268999999999964

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.66  E-value=2.6e-17  Score=121.32  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC---C----------------------------CccCCcceeEEEEEeeeecCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA---E----------------------------EYHPTQGVRIVECEHSYALDT   50 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~---~----------------------------~~~~t~~~~~~~~~~~~~~~~   50 (135)
                      .+||+++|.+++|||||+++|+...-.   .                            +..++++.+.....+    ..
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~----~~  252 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF----ES  252 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE----Ee
Confidence            368999999999999999999642100   0                            001111111111111    11


Q ss_pred             ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ....+.||||||++.|......+++.+|++++|+|+++..   .+   ......+..+.. .   ++| +++|+||+|.
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l---gip~iIvviNKiDl  327 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L---GISEIVVSVNKLDL  327 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S---SCCCEEEEEECGGG
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c---CCCeEEEEEecccc
Confidence            3468899999999999988888999999999999998643   11   112222222221 1   454 9999999995

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=105.88  Aligned_cols=115  Identities=15%  Similarity=0.075  Sum_probs=66.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCC-CCc-------cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-----
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTA-EEY-------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-----   67 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----   67 (135)
                      +.++|+|+|++|||||||++.|++..++ ...       .++.+...  ........+....+++||++|...+.     
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~--i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ--SKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE--EECC------CEEEEEEECC-----------
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee--EEEEEecCCcccceeeeechhhhhhccchhh
Confidence            3678999999999999999999987663 111       12222211  11111223345689999999976531     


Q ss_pred             --cc------------------hHHhhccCcEEEEEEeCCCc-chHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         68 --SV------------------WPAFQRDVHGIIFVFNSGVP-GHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        68 --~~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                        .+                  ...++.++++.+++|+.... .+++.+. .|+..+.     ...|+++|+||+|.
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dl  179 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADT  179 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccC
Confidence              11                  11234456655566665543 4566664 6777773     26899999999995

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.59  E-value=1.8e-15  Score=103.49  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC-CCCCCc--------cCCcceeEEEEEeeeecCCceEEEEEEecCCC-------c
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL-TTAEEY--------HPTQGVRIVECEHSYALDTSKTEIELWDTSGD-------H   64 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~   64 (135)
                      +.++|+++|++|+|||||++++.+. .++...        .++.......+.  ....+....+++||++|.       +
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~--~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVE--IEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEE--EC---CCEEEEEEEEC----------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEE--ecCCCcccCcchhhhhhhhhhcCcHH
Confidence            3589999999999999999998875 443322        122221111111  122345678999999998       6


Q ss_pred             ccccchH-------HhhccCc-------------EEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         65 KFESVWP-------AFQRDVH-------------GIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        65 ~~~~~~~-------~~~~~~~-------------~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .++.+..       .+++..+             +++++.+.+ ..+++.+. .++..+   .  ...|+++|+||+|.
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~~~l~~l---~--~~~~iilV~~K~Dl  167 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI---H--NKVNIVPVIAKADT  167 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHHHHHHHH---T--TTSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHHHHHHHH---H--hcCCEEEEEEeCCC
Confidence            6666655       5555433             333333322 22455543 333333   2  25799999999995

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.59  E-value=7.3e-15  Score=102.42  Aligned_cols=115  Identities=13%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCc------cCCcc----------------------------------------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEY------HPTQG----------------------------------------   36 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~------~~t~~----------------------------------------   36 (135)
                      .+|+|+|.++||||||+++|++..+.+..      .|+..                                        
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~  111 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  111 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence            58999999999999999999998763211      12100                                        


Q ss_pred             ---eeEEEEEeeeecCCceEEEEEEecCCCc-------------ccccchHHhhccCcEEEE-EEeCCCcchHHHHHHHH
Q psy10117         37 ---VRIVECEHSYALDTSKTEIELWDTSGDH-------------KFESVWPAFQRDVHGIIF-VFNSGVPGHISELLLFY   99 (135)
Q Consensus        37 ---~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~   99 (135)
                         ........... ......+.+|||||..             .++.+...|+++++.+++ +.|.+..-.-.....++
T Consensus       112 ~~gi~~~~~~~~i~-~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~  190 (353)
T 2x2e_A          112 NKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA  190 (353)
T ss_dssp             TTCCCCCCEEEEEE-ETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred             CCCcccCceEEEEe-cCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence               00000000000 0123579999999953             344566677777665555 45554322212222344


Q ss_pred             HHHHhccCCCCceEEEEEecCCC
Q psy10117        100 DYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus       100 ~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.    ..+.|+++|+||+|.
T Consensus       191 ~~~~----~~~~~~i~V~NK~Dl  209 (353)
T 2x2e_A          191 KEVD----PQGQRTIGVITKLDL  209 (353)
T ss_dssp             HHHC----TTCTTEEEEEECGGG
T ss_pred             HHhC----cCCCceEEEeccccc
Confidence            4432    236899999999994

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.57  E-value=1.5e-15  Score=103.82  Aligned_cols=94  Identities=11%  Similarity=-0.027  Sum_probs=78.2

Q ss_pred             HHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc-hHHH
Q psy10117         17 VLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG-HISE   94 (135)
Q Consensus        17 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~   94 (135)
                      +++.+++.+.+. ..+.||+|..+. ...  ..+  . .+.+||+  +++++.++..+++++|++++|||+++++ ++..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~--~~~--~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~  103 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTP--DET--G-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI  103 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EEC--CCS--S-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEE--cCC--C-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence            678888888888 789999996443 332  221  1 7899999  8999999999999999999999999987 7899


Q ss_pred             HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         95 LLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        95 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +..|+..+..    .++|+++|+||+|.
T Consensus       104 l~~~l~~~~~----~~~piilv~NK~DL  127 (301)
T 1u0l_A          104 IDKFLVLAEK----NELETVMVINKMDL  127 (301)
T ss_dssp             HHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             HHHHHHHHHH----CCCCEEEEEeHHHc
Confidence            9999998754    37899999999995

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.54  E-value=5e-14  Score=99.95  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=76.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-CCcc-CCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccchHHh---h
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-EEYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVWPAF---Q   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~   74 (135)
                      .|+++|++|||||||++.+++..+. ..+. .|...+...+..    + ....+.+||++|...    +..+...+   .
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~----~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~  233 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV----S-EEERFTLADIPGIIEGASEGKGLGLEFLRHI  233 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC----S-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe----c-CcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence            4789999999999999999987432 1111 122222112221    1 135789999999632    22232333   3


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPGR  123 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~  123 (135)
                      ..++.+++++|++ ...+.++..|.+++..... +...|.++|+||+|..
T Consensus       234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~  282 (416)
T 1udx_A          234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  282 (416)
T ss_dssp             TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence            4799999999998 6778888888887765432 2357899999999953

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.50  E-value=3.3e-13  Score=98.84  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=77.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC-----------------CCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT-----------------AEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~-----------------~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      +|.|+|..++|||||..+|+...-                 ..+   .+...|+++..-..  ........++|.||||+
T Consensus        33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~--~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVM--QFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEE--EEEETTEEEEEECCCCG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceE--EEEECCEEEEEEeCCCc
Confidence            799999999999999999962110                 000   11112221111111  11125679999999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGD  125 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~  125 (135)
                      ..|.......++-+|++++|+|....-.-....-| ..+.+    .++|.+++.||+|....
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchhc
Confidence            99999999999999999999999876554444445 33322    27899999999995433

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.47  E-value=4.2e-14  Score=99.52  Aligned_cols=91  Identities=18%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCc--cCCcceeEEEEEeeee---------cC--CceEEEEEEecCCCccccc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEY--HPTQGVRIVECEHSYA---------LD--TSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~---------~~--~~~~~~~i~d~~g~~~~~~   68 (135)
                      .++|+++|.+|||||||++++++.......  ..|+..+.......-.         .+  .....+.+||+||...+..
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            468999999999999999999987543221  1223322222222100         00  0134699999999876543


Q ss_pred             -------chHHhhccCcEEEEEEeCCCcchH
Q psy10117         69 -------VWPAFQRDVHGIIFVFNSGVPGHI   92 (135)
Q Consensus        69 -------~~~~~~~~~~~~i~v~d~~~~~s~   92 (135)
                             .+..+++++|++++|+|+++.+++
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC------
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence                   345678899999999999875543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.45  E-value=4.6e-13  Score=93.78  Aligned_cols=112  Identities=14%  Similarity=0.061  Sum_probs=70.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc----ccchH---Hh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF----ESVWP---AF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~---~~   73 (135)
                      .+|.++|.|+||||||+|+|++......  ...|..........      ....+.+.|+||.-.-    .....   ..
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~------~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY------KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE------TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe------CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            4799999999999999999998764322  22233332222222      4568899999995321    11112   23


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhc-cCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ-SDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~  122 (135)
                      .+.||++++|+|++++..  .......++... ......|.+++.||+|.
T Consensus       147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            578999999999987632  222222222221 12235688899999994

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.45  E-value=4.5e-13  Score=93.76  Aligned_cols=86  Identities=24%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCc-cCCcceeEEEEEeee----------ecC-----CceEEEEEEecCCCcc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEY-HPTQGVRIVECEHSY----------ALD-----TSKTEIELWDTSGDHK   65 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~-~~t~~~~~~~~~~~~----------~~~-----~~~~~~~i~d~~g~~~   65 (135)
                      ++|+++|.+|||||||++++++.... ..+ ..|+..+........          ...     .....+++||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            57999999999999999999986422 111 112222221222110          000     1245799999999876


Q ss_pred             cc----cch---HHhhccCcEEEEEEeCCC
Q psy10117         66 FE----SVW---PAFQRDVHGIIFVFNSGV   88 (135)
Q Consensus        66 ~~----~~~---~~~~~~~~~~i~v~d~~~   88 (135)
                      +.    .+.   ..+++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42    222   234789999999999986

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.40  E-value=4.6e-12  Score=95.32  Aligned_cols=115  Identities=16%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC--------CC-----C---CccCCcceeEEE--EEeeee---cCCceEEEEEEecCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT--------TA-----E---EYHPTQGVRIVE--CEHSYA---LDTSKTEIELWDTSG   62 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~--------~~-----~---~~~~t~~~~~~~--~~~~~~---~~~~~~~~~i~d~~g   62 (135)
                      ||.|+|+-++|||||..+|+...        ..     .   ..+...|+++..  ....+.   .+...+.+++.||||
T Consensus        15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG   94 (709)
T 4fn5_A           15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG   94 (709)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence            79999999999999999887211        00     0   012223333322  122111   122468999999999


Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +-.|.......++-+|++++|+|+...-......-| .++.++    ++|.+++.||+|..
T Consensus        95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH----TCCEEEEEECSSST
T ss_pred             CcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc----CCCeEEEEcccccc
Confidence            999999999999999999999999876443333333 333222    68999999999943

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.28  E-value=1.4e-12  Score=97.17  Aligned_cols=114  Identities=19%  Similarity=0.223  Sum_probs=76.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC--CCCC-----------Cc---cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117          4 KILILGPIMAGKTVLANALCDL--TTAE-----------EY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE   67 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~--~~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   67 (135)
                      ||.|+|+.++|||||..+|+..  ....           ++   +...|+++..-..  ........+++.||||+..|.
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~--~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT--SFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCC--CCBCSSCBCCCEECCCSSSTH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeE--EEEECCEEEEEEECCCcHHHH
Confidence            6899999999999999998721  1110           00   1111222221111  122355789999999999999


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG  124 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~  124 (135)
                      ......++-+|++++|+|+...-.-.....| ..+.++    ++|.+++.||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~----~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM----GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH----TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc----CCCeEEEEecccccc
Confidence            9999999999999999999875433333333 333222    688999999999533

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.27  E-value=9.3e-12  Score=86.85  Aligned_cols=59  Identities=12%  Similarity=0.088  Sum_probs=41.6

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+.||||||...   ........+|.+++|+|....+.+..+..         ...+.|+++|.||+|.
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl  229 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADG  229 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCG
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCC
Confidence            46889999999432   23445689999999999876554433221         1124699999999995

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.25  E-value=9.5e-11  Score=88.38  Aligned_cols=65  Identities=14%  Similarity=0.042  Sum_probs=43.1

Q ss_pred             EEEEEecCCCcc-------------cccchHHhh-ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEec
Q psy10117         54 EIELWDTSGDHK-------------FESVWPAFQ-RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV  119 (135)
Q Consensus        54 ~~~i~d~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  119 (135)
                      .+.++||||-..             ...+...|+ ..+|.+++|+|.++...-.....++..+..    .+.|+++|.||
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNK  226 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITK  226 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEEC
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeC
Confidence            477999999433             222334454 478999999999875443333344444421    36899999999


Q ss_pred             CCC
Q psy10117        120 KPG  122 (135)
Q Consensus       120 ~D~  122 (135)
                      +|.
T Consensus       227 iDl  229 (772)
T 3zvr_A          227 LDL  229 (772)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            994

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.24  E-value=2.6e-11  Score=84.45  Aligned_cols=59  Identities=14%  Similarity=0.029  Sum_probs=35.8

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+.++||+|...   ........+|.+++|+|.+++.....+..   .+      ...|.++|.||+|.
T Consensus       166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl  224 (349)
T 2www_A          166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDG  224 (349)
T ss_dssp             TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSG
T ss_pred             CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecC
Confidence            45789999999432   12445679999999999887543222211   11      24578999999995

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.22  E-value=6.2e-12  Score=81.90  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCc------cCCc----------ceeEEEEEee--eec----------CCceEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEY------HPTQ----------GVRIVECEHS--YAL----------DTSKTE   54 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~------~~t~----------~~~~~~~~~~--~~~----------~~~~~~   54 (135)
                      .+|+++|.+|||||||+++|+........      .+..          +.........  ...          ......
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  110 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCD  110 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTCS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCCC
Confidence            58999999999999999999875321100      0000          1110000000  000          113467


Q ss_pred             EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+||++|+-...   ..+....+.+++|+|+.+...  ....+....       +.|+++|+||+|.
T Consensus       111 ~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~-------~~~~iiv~NK~Dl  166 (221)
T 2wsm_A          111 LLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEIF-------RVADLIVINKVAL  166 (221)
T ss_dssp             EEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHHH-------HTCSEEEEECGGG
T ss_pred             EEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhhh-------hcCCEEEEecccC
Confidence            8899999851111   111135788999999876532  111222221       4688999999995

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.18  E-value=1e-13  Score=90.65  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=26.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQG   36 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~   36 (135)
                      ++|+++|++|||||||+++++...+.....++++
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~   72 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA   72 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence            6899999999999999999998765443334443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.16  E-value=7.6e-11  Score=78.63  Aligned_cols=66  Identities=9%  Similarity=-0.018  Sum_probs=40.4

Q ss_pred             EEEEEEecCCCcccccchH------HhhccCcEEEEEEeCCCcchHHHHH---HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESVWP------AFQRDVHGIIFVFNSGVPGHISELL---LFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~---~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+.||||||...+.....      ..+.+ +.+++++|.....+.....   .+.......   .+.|+++|+||+|.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~  183 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDL  183 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccc
Confidence            5799999999876533221      24456 8899999876443322222   111111111   25799999999995

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.13  E-value=3.5e-10  Score=76.17  Aligned_cols=113  Identities=17%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCC---------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc----
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEE---------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE----   67 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----   67 (135)
                      |+++++++|++|+|||||++.+++...+..         ...+....  ..............++++|++|-....    
T Consensus         1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~--~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~   78 (270)
T 3sop_A            1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIK--AIGHVIEEGGVKMKLTVIDTPGFGDQINNEN   78 (270)
T ss_dssp             CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCC--EEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeee--eeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence            689999999999999999999998654321         00111101  111111222234478999998732110    


Q ss_pred             --cchHH--------h--------------hccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         68 --SVWPA--------F--------------QRDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        68 --~~~~~--------~--------------~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                        .....        +              ...+++.+++.|.... .+... ...+..+..     ..++++|.+|.|
T Consensus        79 ~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~-----~~~vI~Vi~K~D  151 (270)
T 3sop_A           79 CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK-----VVNIIPVIAKAD  151 (270)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT-----TSEEEEEETTGG
T ss_pred             HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh-----cCcEEEEEeccc
Confidence              00011        0              1135788888885422 22222 334444422     279999999999

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.13  E-value=4.7e-11  Score=82.90  Aligned_cols=60  Identities=17%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ...+.|+||||...+.   ....+.+|++++|+|.+....+..+...   .      .+.|.++|+||+|..
T Consensus       148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~------~~~p~ivv~NK~Dl~  207 (341)
T 2p67_A          148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---L------MEVADLIVINKDDGD  207 (341)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---H------HHHCSEEEECCCCTT
T ss_pred             CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHh---h------hcccCEEEEECCCCC
Confidence            4689999999965433   2356899999999998765432211111   0      146889999999953

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.12  E-value=3.6e-11  Score=77.64  Aligned_cols=59  Identities=10%  Similarity=0.080  Sum_probs=39.4

Q ss_pred             CCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHH---HHHhcc-CCCCceEEEEEecC
Q psy10117         61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYD---YFVTQS-DLNNHKCLLIDNVK  120 (135)
Q Consensus        61 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK~  120 (135)
                      +||+..++.|..||+++|++|||+|.+|.+.++ .+.-+.   .+.... .+.++|++|++||+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKq  172 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCIS  172 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEES
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCC
Confidence            489999999999999999999999999987654 433332   233332 23589999999996

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.10  E-value=4.5e-10  Score=79.18  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=53.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCC-CCCccC--CcceeEEEEEeee---------ecCCc--eEEEEEEecCCCcc---
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTT-AEEYHP--TQGVRIVECEHSY---------ALDTS--KTEIELWDTSGDHK---   65 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~-~~~~~~--t~~~~~~~~~~~~---------~~~~~--~~~~~i~d~~g~~~---   65 (135)
                      .++.++|++|||||||++.|++... .....|  |+..+.......-         .....  ...+.+||++|...   
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s  100 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS  100 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence            5899999999999999999999654 222222  2222221222210         00011  13689999999432   


Q ss_pred             ----cccchHHhhccCcEEEEEEeCCC
Q psy10117         66 ----FESVWPAFQRDVHGIIFVFNSGV   88 (135)
Q Consensus        66 ----~~~~~~~~~~~~~~~i~v~d~~~   88 (135)
                          ........++.+|++++|+|+.+
T Consensus       101 ~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          101 TGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                22234455689999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.06  E-value=2.8e-09  Score=75.76  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccC--CcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHP--TQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      ++++|+|++|+|||||++.+++.........  ..+..................++++|++|-
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            5799999999999999999998753221100  111111111111122223457899999874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.98  E-value=9.4e-10  Score=76.26  Aligned_cols=59  Identities=12%  Similarity=0.016  Sum_probs=35.5

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+.++||+|.....   ......+|.+++++|....+....+..++.         ..+.+++.||+|.
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvlNK~Dl  205 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAVNKADD  205 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH---------HHCSEEEEECCST
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEEEchhc
Confidence            4678999999964322   234578999999999864432211111111         2355777799994

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.91  E-value=3.1e-10  Score=76.58  Aligned_cols=61  Identities=10%  Similarity=0.068  Sum_probs=43.7

Q ss_pred             cCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHH---HHHhcc-CCCCceEEEEEecC-C
Q psy10117         60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYD---YFVTQS-DLNNHKCLLIDNVK-P  121 (135)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK~-D  121 (135)
                      .+||+..++.|..||+++|++|||+|.+|.+.++ ...-+.   .+.... ...++|++|++||+ |
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQD  259 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQG  259 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESST
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccc
Confidence            4688999999999999999999999999988654 322222   222222 13579999999974 6

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=9.4e-10  Score=77.11  Aligned_cols=107  Identities=17%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC------CCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc--------c
Q psy10117          3 IKILILGPIMAGKTVLANALCDL------TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE--------S   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~   68 (135)
                      .+++++|.+|+|||||+|++.+.      .......|.....  ........     .+.+.||||-....        .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~-----~~~liDtPG~~~~~~~~~~l~~~  235 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES-----GATLYDTPGIINHHQMAHFVDAR  235 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST-----TCEEEECCSCCCCSSGGGGSCTT
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC-----CeEEEeCCCcCcHHHHHHHHhHH
Confidence            36899999999999999999986      1111111221111  21221111     27899999953222        1


Q ss_pred             chHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         69 VWPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        69 ~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ....++  +..+.++++++....-.+..+.. ++.    ....+.|++++.||.|
T Consensus       236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~----l~~~~~~~~~v~~k~d  285 (369)
T 3ec1_A          236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDY----IKGGRRSFVCYMANEL  285 (369)
T ss_dssp             THHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEE----EESSSEEEEEEECTTS
T ss_pred             HHHHHhcccccCceEEEEcCCceEEECCEEE-EEE----ccCCCceEEEEecCCc
Confidence            122222  57889999998743211111111 111    1123689999999999

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.81  E-value=1.1e-08  Score=69.95  Aligned_cols=56  Identities=11%  Similarity=-0.027  Sum_probs=49.3

Q ss_pred             CcccccchHHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         63 DHKFESVWPAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++..+...+++++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL  122 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDL  122 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccC
Confidence            7788888888999999999999999986 89989999987754    37899999999995

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.81  E-value=2.6e-09  Score=74.88  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-----CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------c
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-----EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------V   69 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~   69 (135)
                      .+++++|.+|+|||||+|++.+.....     ...+..+.+..........     .+.++||||-.....        .
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-----~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-----ESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-----SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-----CeEEEeCCCcCcHHHHHHHhhHHH
Confidence            368999999999999999999863211     1112222221111221111     278999999533221        1


Q ss_pred             hHHh--hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         70 WPAF--QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        70 ~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+  ....+.++++++....-.+..+.. ++.   .. ....|++++.||.|.
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~---l~-~~~~~~~~v~nk~d~  285 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDY---VS-GGRRAFTCHFSNRLT  285 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEE---EE-SSSEEEEEEECTTSC
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE-EEE---ec-CCCceEEEEecCccc
Confidence            1112  246788888888632211111110 111   11 136899999999993

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.72  E-value=2.8e-09  Score=71.44  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=34.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK   65 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   65 (135)
                      ++++++|.+|+|||||+|++.+..... ..++.|.+.......     ....+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~-----~~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFS-----LENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE-----CTTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEE-----eCCCEEEEECCCccc
Confidence            489999999999999999999865432 223333221111111     112678999999553

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.68  E-value=1.3e-07  Score=67.17  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCc-ceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhh-----ccC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQ-GVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQ-----RDV   77 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~-----~~~   77 (135)
                      .++++|++|+|||||++.+.+...+..-.-.. +..... ..........-.+.+||++|-...+.....++     .+.
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            68999999999999999999865432211111 111000 00011111122578999998532222223332     234


Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         78 HGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        78 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +..++ ++.....   .-+..+.......   +.|+++|.||.|
T Consensus       150 ~~~~~-lS~G~~~---kqrv~la~aL~~~---~~p~~lV~tkpd  186 (413)
T 1tq4_A          150 DFFII-ISATRFK---KNDIDIAKAISMM---KKEFYFVRTKVD  186 (413)
T ss_dssp             SEEEE-EESSCCC---HHHHHHHHHHHHT---TCEEEEEECCHH
T ss_pred             CCeEE-eCCCCcc---HHHHHHHHHHHhc---CCCeEEEEecCc
Confidence            55554 6654211   1222222222221   579999999988

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.66  E-value=6.5e-08  Score=70.26  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             EEEEEECCCCCChHHHHHHHh------cCCCC----CCccCC-----------cceeEEEEEeee-----------ecCC
Q psy10117          3 IKILILGPIMAGKTVLANALC------DLTTA----EEYHPT-----------QGVRIVECEHSY-----------ALDT   50 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~~~-----------~~~~   50 (135)
                      ..|+++|.+||||||+++.|.      +.+..    +.+.+.           .+..++......           ....
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~  181 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN  181 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999998      32211    111111           012211110000           0001


Q ss_pred             ceEEEEEEecCCCccccc-chH---Hh--hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEecCCCC
Q psy10117         51 SKTEIELWDTSGDHKFES-VWP---AF--QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDNVKPGR  123 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~  123 (135)
                      ..+.+.|+||||...... ...   ..  +..++.+++|+|.......   ......+..     ..|+ .+|.||.|..
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----KVDVASVIVTKLDGH  253 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----HHCCCCEEEECTTSC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----hcCceEEEEeCCccc
Confidence            346789999999653221 111   11  2278999999999775431   122223321     1564 8899999953

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.65  E-value=2.2e-08  Score=67.82  Aligned_cols=56  Identities=30%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      ++++++|.+|||||||+|++.+..... ..+..+.+.......  .   ...+.+|||||-.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~--~---~~~~~l~DtpG~~  176 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVK--V---GKELELLDTPGIL  176 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE--E---TTTEEEEECCCCC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEE--e---CCCEEEEECcCcC
Confidence            689999999999999999999865321 112222211111111  1   1258899999954

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.51  E-value=5.2e-08  Score=70.28  Aligned_cols=100  Identities=14%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc--ccccch--------H
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH--KFESVW--------P   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--~~~~~~--------~   71 (135)
                      +.+|+++|.+||||||+.++|....... ..++.+.+...+..  ...+......+||..|.+  +.+..+        .
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999998643210 11121111000000  100112345689988873  233333        5


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhc
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ  105 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~  105 (135)
                      .++..+.+.++|+|.++. +.+....|++.+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            566678899999999987 566677777766543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.41  E-value=5.9e-07  Score=66.40  Aligned_cols=59  Identities=22%  Similarity=0.235  Sum_probs=37.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCc-----cCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEY-----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      .+|+|+|.+++|||||+|+|++....-.+     ..|.|.-.+..  +. .......+.++||||-.
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~--~~-~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCV--PH-PKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEE--EC-SSSTTCEEEEEEECCBC
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeec--cc-ccCCCceEEEecCCCcC
Confidence            57899999999999999999987532111     22333321111  11 11234578999999954

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.29  E-value=3.8e-06  Score=62.46  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++|+|++|||||||++.+.+...+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4899999999999999999997543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.14  E-value=1.3e-06  Score=55.17  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .+++++|++|+|||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.11  E-value=7.9e-06  Score=58.42  Aligned_cols=64  Identities=20%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             ceEEEEEEecCCCcccccch-H---Hh--hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCc-e-EEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESVW-P---AF--QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNH-K-CLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~~-~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~D~  122 (135)
                      ..+.+-|.||+|........ .   ..  ...++.+++|.|.....   ........+.   .  .. | ..+|.||.|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~--~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---E--AVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---T--TSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---h--cccCCeEEEEeCCCC
Confidence            34678999999965432111 1   11  12689999999986543   2222233332   1  24 4 8899999995

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.11  E-value=1.2e-05  Score=57.50  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC----------CCcc-----------CCcceeEEEEEeee-----------ecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA----------EEYH-----------PTQGVRIVECEHSY-----------ALDT   50 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~----------~~~~-----------~t~~~~~~~~~~~~-----------~~~~   50 (135)
                      .-|+++|++||||||++..|...-..          +.+.           ...+..++......           ....
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~  180 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS  180 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999988731100          1111           11122221110000           0000


Q ss_pred             ceEEEEEEecCCCcccccc----hHH--hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         51 SKTEIELWDTSGDHKFESV----WPA--FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.+-|.||+|.......    ...  ....++.+++|.|......   .......+...    -.+..+|.||.|.
T Consensus       181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA----TPIGSIIVTKLDG  251 (443)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS----CTTEEEEEECCSS
T ss_pred             CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh----CCCeEEEEECCCC
Confidence            2367889999995432211    111  1235789999999876433   22222333221    2355788999995

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.06  E-value=6.4e-06  Score=58.85  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             eEEEEEEecCCCcc--ccc----chHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHK--FES----VWPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~--~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+-|.|++|...  ...    ......  ...+.+++|.|........   .....+...    -.+..+|.||.|.
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~----~~~~gVIlTKlD~  250 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA----SPIGSVIITKMDG  250 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH----CSSEEEEEECGGG
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc----cCCcEEEEecccc
Confidence            45778999999543  111    111111  2468999999987654322   222333222    1356788999984

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.02  E-value=2.9e-06  Score=53.52  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -++++|++|||||||++.+.+..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.02  E-value=3e-06  Score=54.33  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|+||+|||||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.95  E-value=4.5e-06  Score=53.75  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      ++++|++|||||||++.+.+..
T Consensus        23 ~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           23 VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6899999999999999998754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.95  E-value=4.7e-06  Score=53.25  Aligned_cols=22  Identities=41%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.95  E-value=6.5e-06  Score=54.24  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -++++|++|||||||++.+.+...+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            3689999999999999999986553

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.94  E-value=5e-06  Score=54.21  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++|+||+|||||||++.+.+...
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            378999999999999999998654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.92  E-value=6.1e-06  Score=51.64  Aligned_cols=19  Identities=21%  Similarity=0.469  Sum_probs=16.7

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      ++++|++|||||||++.+.
T Consensus        12 ~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           12 VVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEECCTTSCHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            6899999999999999543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.90  E-value=6.1e-06  Score=52.17  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++||||||+++.+.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5889999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.90  E-value=6.1e-06  Score=53.67  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++|+|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999998854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.90  E-value=9.8e-06  Score=50.60  Aligned_cols=24  Identities=33%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~   24 (135)
                      |+..|++.|++||||||+.+.+..
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHh
Confidence            566799999999999999999987

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.89  E-value=8.3e-06  Score=53.32  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++++|++|||||||++.+.+...
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            367999999999999999998654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.88  E-value=1e-05  Score=53.44  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++++|++|||||||++.+.+...
T Consensus        27 ~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           27 CVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999998654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.87  E-value=4.7e-06  Score=58.42  Aligned_cols=54  Identities=13%  Similarity=0.035  Sum_probs=43.4

Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .++.|+..+..+++.++++++|+|++++.     ..|...+.+...  +.|+++|+||+|.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~~p~ilV~NK~DL  108 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--NNKVLLVGNKADL  108 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--SSCEEEEEECGGG
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--CCcEEEEEEChhc
Confidence            46789999999999999999999998743     456666655433  7899999999995

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.87  E-value=6.9e-06  Score=51.10  Aligned_cols=23  Identities=30%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|+++|++||||||+.+.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.87  E-value=1.1e-05  Score=54.01  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++++|++|||||||++.+.+...
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999998654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.86  E-value=1.1e-05  Score=52.35  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++++|++|+|||||++.+.+...
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            67999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.86  E-value=1.2e-05  Score=53.88  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+.++|++|||||||++.+.+...+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~p   63 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLSP   63 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            3689999999999999999986543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.86  E-value=8.4e-06  Score=50.51  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -++++|++|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999999865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.86  E-value=8.5e-06  Score=52.29  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -|+|+||+|||||||++.|....
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999998643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.86  E-value=1.1e-05  Score=54.33  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -++++|++|||||||++.+.+...+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            3689999999999999999986543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.85  E-value=1.2e-05  Score=53.65  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -++++|++|||||||++.+.+...+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~p   59 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLKA   59 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3689999999999999999986543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.85  E-value=1e-05  Score=51.49  Aligned_cols=21  Identities=38%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.84  E-value=9.5e-06  Score=52.26  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|.|+|++|||||||++.+.+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.84  E-value=1.6e-05  Score=52.64  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQP   54 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999986543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.84  E-value=9.5e-06  Score=52.30  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      |+++||+||||||+++.|....
T Consensus        11 i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           11 IVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEECcCCCCHHHHHHHHHhhC
Confidence            7899999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.83  E-value=1.3e-05  Score=53.66  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|||||||++.+.+...
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            368999999999999999998654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.83  E-value=1.3e-05  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++++|++|+|||||++.+.+...
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            368999999999999999998654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.83  E-value=1.4e-05  Score=52.42  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999998654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.83  E-value=1.4e-05  Score=53.35  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++++|++|+|||||++.+.+...
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.82  E-value=1.6e-05  Score=52.79  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|||||||++.+.+...+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~p   61 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYIP   61 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999987543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.81  E-value=1.5e-05  Score=52.92  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            368999999999999999998654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.81  E-value=1.2e-05  Score=53.04  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|||||||++.+.+...
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.80  E-value=1.7e-05  Score=50.14  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~   24 (135)
                      .--++++|++||||||+++.+.+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            34578999999999999999986

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.80  E-value=4.8e-05  Score=54.58  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |.|+|++++|||+|+|+|++.
T Consensus        70 VsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           70 VSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhhh
Confidence            679999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.80  E-value=1.8e-05  Score=53.38  Aligned_cols=25  Identities=40%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            4789999999999999999986543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.79  E-value=1.7e-05  Score=53.33  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++|+|++|+|||||++.+.+...+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~p   71 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQP   71 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999987543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.78  E-value=1.9e-05  Score=50.58  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.4

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~   24 (135)
                      |.+.|.++|++||||||+.+.|.+
T Consensus         1 m~~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            1 MTYIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.78  E-value=0.00012  Score=49.77  Aligned_cols=64  Identities=20%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             ceEEEEEEecCCCcc--ccc-chH-----HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCC
Q psy10117         51 SKTEIELWDTSGDHK--FES-VWP-----AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKP  121 (135)
Q Consensus        51 ~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D  121 (135)
                      ..+.+-|.||||...  ... ...     .....++.+++|.|....   .+....+..+..     ..| ..+|.||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            345789999999765  211 111     124478999999998643   222223333322     244 678889998


Q ss_pred             C
Q psy10117        122 G  122 (135)
Q Consensus       122 ~  122 (135)
                      .
T Consensus       251 ~  251 (297)
T 1j8m_F          251 G  251 (297)
T ss_dssp             G
T ss_pred             C
Confidence            4

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.78  E-value=1.8e-05  Score=52.65  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            368999999999999999998654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.77  E-value=1.9e-05  Score=52.95  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            367999999999999999998654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.77  E-value=1.5e-05  Score=52.89  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++|+|||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999985

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.76  E-value=1.2e-05  Score=52.05  Aligned_cols=22  Identities=41%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999986

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.76  E-value=1.6e-05  Score=53.32  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++|+|||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999996

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.76  E-value=7.5e-06  Score=57.38  Aligned_cols=54  Identities=13%  Similarity=0.041  Sum_probs=41.8

Q ss_pred             CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .++.|+..+..+++.++++++|+|++++.+     .|..++.+..  .+.|+++|+||+|.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DL  110 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADL  110 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGG
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhc
Confidence            478899999999999999999999998764     3444443332  37899999999994

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.75  E-value=1.6e-05  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            478999999999999999998643

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.74  E-value=1.6e-05  Score=50.78  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .|+++|++||||||+++.+.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58899999999999999998754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.74  E-value=2e-05  Score=51.97  Aligned_cols=20  Identities=30%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHh
Q psy10117          4 KILILGPIMAGKTVLANALC   23 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~   23 (135)
                      .|+|+|++||||||+++.+.
T Consensus        29 ~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999999

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.73  E-value=2.6e-05  Score=54.46  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|||||||++.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            478999999999999999998654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.73  E-value=1.5e-05  Score=50.75  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.73  E-value=1.9e-05  Score=50.60  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -|+++|++||||||+++.|....
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.73  E-value=1.8e-05  Score=50.59  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|+++|++||||||+++.+.+
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.73  E-value=1.7e-05  Score=53.03  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++++|++||||||+++.+.+..
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhC
Confidence            47899999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.72  E-value=2.2e-05  Score=54.78  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++||+|||||||++.+.+...+
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCchHHHHHHHHhcCCCC
Confidence            679999999999999999997653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.72  E-value=2.4e-05  Score=53.33  Aligned_cols=25  Identities=24%  Similarity=0.109  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -++++|++|||||||++.+.+...+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             eEEEECCCCCcHHHHHHHhcccccc
Confidence            4689999999999999999986553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.72  E-value=2.9e-05  Score=52.02  Aligned_cols=23  Identities=48%  Similarity=0.719  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++++|++|+|||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999876

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.71  E-value=2.2e-05  Score=48.55  Aligned_cols=20  Identities=40%  Similarity=0.393  Sum_probs=18.6

Q ss_pred             EEEEEECCCCCChHHHHHHH
Q psy10117          3 IKILILGPIMAGKTVLANAL   22 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l   22 (135)
                      +-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.71  E-value=1.7e-05  Score=50.96  Aligned_cols=22  Identities=45%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|.|+|++|||||||++.+.+.
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998874

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.70  E-value=2.9e-05  Score=54.16  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|||||||++.+.+...+
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCC
Confidence            679999999999999999987553

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.69  E-value=2.5e-05  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.68  E-value=2.6e-05  Score=50.60  Aligned_cols=23  Identities=39%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|.++|++||||||+.+.+...
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.68  E-value=3.3e-05  Score=54.32  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++||+|||||||++.+.+...+
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEcCCCchHHHHHHHHHcCCCC
Confidence            689999999999999999987653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.68  E-value=3.3e-05  Score=53.98  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|||||||++.+.+...+
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCchHHHHHHHHhcCCCC
Confidence            679999999999999999987553

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.68  E-value=3.3e-05  Score=53.97  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|||||||++.+.+-..+
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEcCCCchHHHHHHHHHCCCCC
Confidence            679999999999999999987553

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.68  E-value=2.7e-05  Score=50.23  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.67  E-value=3e-05  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.67  E-value=2.6e-05  Score=53.32  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|+|++|+|||||++.|.+.
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5789999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.66  E-value=3e-05  Score=50.08  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++|+++|+|||||+|...+|...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.66  E-value=4.3e-05  Score=51.67  Aligned_cols=57  Identities=9%  Similarity=-0.011  Sum_probs=39.9

Q ss_pred             EEecCCCc-ccccchHHhhccCcEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         57 LWDTSGDH-KFESVWPAFQRDVHGIIFVFNSGVPGHIS--ELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        57 i~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |-..||+. .........+.++|+++.|+|+.++.+..  .+..|+         .+.|.++|.||+|.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL   62 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADK   62 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGG
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECccc
Confidence            45578875 45556677789999999999999988764  344443         36899999999994

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.65  E-value=3.8e-05  Score=53.91  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|||||||++.+.+...+
T Consensus        40 ~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCChHHHHHHHHHcCCCC
Confidence            679999999999999999987553

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.65  E-value=3.7e-05  Score=53.96  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++++|++|||||||++.+.+...
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCcHHHHHHHHHHcCCC
Confidence            67999999999999999998755

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.65  E-value=3.7e-05  Score=53.81  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|||||||++.+.+...+
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEcCCCchHHHHHHHHhcCCCC
Confidence            679999999999999999987553

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.65  E-value=1.6e-05  Score=51.98  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=14.7

Q ss_pred             EEEEECCCCCChHHHHHHHh-cC
Q psy10117          4 KILILGPIMAGKTVLANALC-DL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~-~~   25 (135)
                      -++|+|++|||||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            37899999999999999999 64

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.65  E-value=2.2e-05  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.248  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .+++.|++|+|||+|++.+.+..
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.64  E-value=2.9e-05  Score=49.63  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+++|++||||||+.+.+.+.
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.64  E-value=3.8e-05  Score=47.93  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.64  E-value=3e-05  Score=48.36  Aligned_cols=21  Identities=19%  Similarity=0.388  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|+++|++||||||+++.+.+
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.63  E-value=4.4e-05  Score=52.06  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++++|++|||||||++.+. ...
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hhh
Confidence            36899999999999999999 544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=3.6e-05  Score=49.16  Aligned_cols=21  Identities=38%  Similarity=0.592  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|+++|++||||||+.+.+..
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.63  E-value=2.7e-05  Score=50.48  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++|+|++|+|||||++.+++.
T Consensus        28 ~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.62  E-value=2.8e-05  Score=53.18  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Confidence            578999999999999999998654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.62  E-value=3.2e-05  Score=52.49  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999998654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.62  E-value=3.1e-05  Score=54.08  Aligned_cols=26  Identities=35%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .-+++|+|++|+|||||++.+.+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999987543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.62  E-value=3.1e-05  Score=53.12  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|.|+|++|||||||++.+.+.
T Consensus        92 ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           92 IIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHhh
Confidence            5789999999999999988874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.61  E-value=3.1e-05  Score=49.43  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999886

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.61  E-value=2.9e-05  Score=54.04  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|||||||++.+.+...+
T Consensus        29 ~~llGpnGsGKSTLLr~iaGl~~p   52 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAGFHVP   52 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             EEEECCCCccHHHHHHHHHcCCCC
Confidence            689999999999999999987553

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.60  E-value=3.5e-05  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|+|+|++||||||+.+.|...
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.58  E-value=4.2e-05  Score=48.64  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999886

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.57  E-value=0.00012  Score=46.79  Aligned_cols=21  Identities=43%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +++.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.57  E-value=1.1e-05  Score=55.25  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=0.0

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      ++++|++|||||||+|.+.+
T Consensus       176 ~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          176 TVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             EEEEESHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHhcc

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.56  E-value=4.1e-05  Score=53.45  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++|+|++||||||+++.+++..
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            58999999999999999998743

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.55  E-value=4.7e-05  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.102  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++|+|||||++++...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4789999999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.55  E-value=3.6e-05  Score=48.37  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~   24 (135)
                      |...|++.|++||||||+.+.|..
T Consensus         1 M~~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            1 MAPKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             -CCSEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            455799999999999999998875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.55  E-value=4.5e-05  Score=50.33  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -|.|+|++|||||||++.+.+
T Consensus        27 iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           27 LIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.55  E-value=6.5e-05  Score=47.16  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~   24 (135)
                      ...|++.|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.55  E-value=5.6e-05  Score=47.56  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.55  E-value=4.6e-05  Score=49.15  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.54  E-value=4.6e-05  Score=51.25  Aligned_cols=21  Identities=43%  Similarity=0.678  Sum_probs=19.7

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++++||+|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.54  E-value=3e-05  Score=54.06  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=20.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++++|++|||||||++.+.+...
T Consensus        34 ~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            67999999999999999998755

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.53  E-value=6.2e-05  Score=51.97  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|||||||++.+.+...
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999998654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.52  E-value=6.5e-05  Score=47.17  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.52  E-value=5e-05  Score=51.90  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++||||||+++.+.+.
T Consensus       104 vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998853

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.52  E-value=6.3e-05  Score=47.32  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.50  E-value=5.5e-05  Score=51.64  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++||||||+++.+.+.
T Consensus       102 vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.50  E-value=7e-05  Score=52.31  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++|+|||||++.+.+...
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            578999999999999999998654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.50  E-value=4.2e-05  Score=46.81  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.50  E-value=5.2e-05  Score=53.53  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .+.++|++|||||||++.+.+..
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            37899999999999999999753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.50  E-value=7.6e-05  Score=47.06  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.50  E-value=5.9e-05  Score=49.84  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++|+|||+|++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999999874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.47  E-value=8.9e-05  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|++.|++||||||+.+.|..
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.47  E-value=8.4e-05  Score=47.39  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~   24 (135)
                      .+.|++.|++||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.46  E-value=8.6e-05  Score=45.82  Aligned_cols=22  Identities=23%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.46  E-value=6.8e-05  Score=46.77  Aligned_cols=22  Identities=36%  Similarity=0.526  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +|+++|++||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999988753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.46  E-value=2.8e-05  Score=48.79  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .+.|+|++|||||||++.+.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.46  E-value=9.1e-05  Score=46.57  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~   24 (135)
                      ...|++.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.46  E-value=7.1e-05  Score=52.51  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|+|++||||||+++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.46  E-value=0.0011  Score=45.64  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998873

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.45  E-value=7e-05  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++||||||+++.+.+.
T Consensus       131 vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          131 VIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.45  E-value=8.5e-05  Score=48.06  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +.|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.45  E-value=8.6e-05  Score=48.29  Aligned_cols=22  Identities=41%  Similarity=0.610  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +.|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.44  E-value=0.00011  Score=47.03  Aligned_cols=23  Identities=30%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999863

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.44  E-value=0.00092  Score=40.40  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=20.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .|++.|++|+|||++.+.+....
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.44  E-value=7e-05  Score=53.32  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -++|+|++||||||+++.+++...
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcC
Confidence            378999999999999999988543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.43  E-value=0.00011  Score=49.70  Aligned_cols=24  Identities=33%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~   24 (135)
                      |+..|++.|++||||||+.+.|..
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            566799999999999999999886

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.43  E-value=8.2e-05  Score=46.11  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.42  E-value=8e-05  Score=50.40  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|++.|++||||||+.+.+...
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.42  E-value=8.3e-05  Score=46.59  Aligned_cols=21  Identities=24%  Similarity=0.339  Sum_probs=18.5

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      .+|+|++|+|||||+..+...
T Consensus        29 ~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.42  E-value=0.00012  Score=46.12  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.42  E-value=0.00011  Score=46.36  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+|+++|++||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.41  E-value=8.2e-05  Score=51.32  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.41  E-value=7.4e-05  Score=51.03  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|.|+|++|||||||++.+.+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999988874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.41  E-value=0.00011  Score=48.79  Aligned_cols=21  Identities=43%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCChHHHHHHHh
Q psy10117          3 IKILILGPIMAGKTVLANALC   23 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~   23 (135)
                      ..|.|+|++||||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999998

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.41  E-value=0.00014  Score=53.40  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999999986543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.41  E-value=8.8e-05  Score=49.26  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.41  E-value=0.0001  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.41  E-value=0.00011  Score=47.06  Aligned_cols=23  Identities=39%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|+++|++||||||+.+.|...
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.41  E-value=9.1e-05  Score=48.19  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|+|.|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.41  E-value=7.1e-05  Score=48.91  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|.|++||||||+++.+.+.
T Consensus        22 ~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           22 TVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4889999999999999998875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.40  E-value=9e-05  Score=49.70  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -++++|++|+|||+|++.+.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            38999999999999999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.39  E-value=0.00011  Score=53.60  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++|+|++||||||+++.+++...
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            489999999999999999998654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.38  E-value=0.00014  Score=53.39  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|+|||||++.+.+...+
T Consensus        28 ~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           28 LGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            679999999999999999986543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.38  E-value=0.00012  Score=45.87  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|++.|++||||||+.+.+..
T Consensus        13 ~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.37  E-value=0.0001  Score=47.67  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=18.8

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++++|++|+|||||+..+...
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            689999999999999998853

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.37  E-value=9.7e-05  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++||||||+++.+.+.
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHhh
Confidence            4789999999999999988864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.37  E-value=0.0001  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +=|.|+|++|||||||++.+.+.
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999988653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.36  E-value=0.00013  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.36  E-value=9.9e-05  Score=47.21  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .-|.++|++||||||+++.+.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.36  E-value=8.9e-05  Score=53.44  Aligned_cols=23  Identities=35%  Similarity=0.726  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++|+|++|||||||++.+++..
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            57899999999999999998753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.35  E-value=0.00012  Score=50.98  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++.++|++|+|||||++.+.+...
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999999999754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00017  Score=53.76  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -+.++|++|+|||||++.+.+...+
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            3689999999999999999986544

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.34  E-value=0.00012  Score=47.26  Aligned_cols=22  Identities=14%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|+++|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.33  E-value=0.00012  Score=47.45  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.33  E-value=0.00015  Score=45.70  Aligned_cols=21  Identities=33%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.33  E-value=9.7e-05  Score=46.78  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|++.|++||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.32  E-value=0.00012  Score=53.17  Aligned_cols=22  Identities=32%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++|+|++|||||||++.|.+.
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHH
Confidence            4789999999999999998853

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.32  E-value=0.00015  Score=45.83  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.31  E-value=0.00015  Score=47.21  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=17.8

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+++|+|||||+|...+|...
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999988753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.31  E-value=0.00019  Score=45.75  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|+|.|++||||||+.+.|..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.31  E-value=0.00016  Score=45.21  Aligned_cols=22  Identities=23%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+.++|++|||||||+.++...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.31  E-value=0.00017  Score=44.14  Aligned_cols=19  Identities=37%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      .+|+|++|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.30  E-value=0.00019  Score=45.16  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|++.|.+||||||+.+.+...
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.30  E-value=0.00014  Score=48.08  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.29  E-value=0.00082  Score=40.56  Aligned_cols=22  Identities=9%  Similarity=0.069  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|++.|++|+|||++.+.+...
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCT
T ss_pred             cEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.29  E-value=5e-05  Score=48.74  Aligned_cols=22  Identities=36%  Similarity=0.289  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.29  E-value=0.0002  Score=53.01  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999986543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.29  E-value=0.00023  Score=53.03  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+.++|++|+|||||++.+.+...+
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~p  143 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLIP  143 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCCC
Confidence            4789999999999999999986543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.28  E-value=0.0001  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      ++|+|+.|||||||++.+.+..
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEecCCCCHHHHHHHHHhhc
Confidence            5789999999999999999754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.28  E-value=0.00016  Score=45.15  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|++.|++||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999998773

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.28  E-value=0.00018  Score=47.01  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+|+++|++||||||+.+.|...
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.28  E-value=0.00012  Score=45.48  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999988764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.27  E-value=0.00019  Score=53.09  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .++++|++|+|||||++.+.+...
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            578999999999999999998654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.27  E-value=0.00013  Score=49.26  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=19.4

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      ++|+|++|+|||||+..+.+..
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999888643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.26  E-value=0.00018  Score=46.63  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        54 ~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           54 AIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.26  E-value=0.00014  Score=52.61  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++|+|++|+|||||++.+.+...
T Consensus        32 ~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           32 TTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999986543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.26  E-value=0.00017  Score=46.18  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.25  E-value=0.00021  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .-|.|.|++|||||||++.+..
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.25  E-value=0.00017  Score=51.66  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      ++.++|++|+|||||++.+.+...
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            578999999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.25  E-value=0.00014  Score=48.28  Aligned_cols=23  Identities=35%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|+++|++||||||+.+.+...
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999998763

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.24  E-value=0.00025  Score=45.77  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~   24 (135)
                      .+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.24  E-value=0.00024  Score=52.21  Aligned_cols=25  Identities=48%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+.++|++|+|||||++.+.+...+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3689999999999999999986553

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.24  E-value=0.00024  Score=47.26  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.24  E-value=0.00024  Score=52.87  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+.++|++|+|||||++.+.+...+
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p  408 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEP  408 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999986543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.23  E-value=0.0002  Score=45.63  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhc
Q psy10117          1 MKIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~   24 (135)
                      |+..|.|.|++||||||+.+.|..
T Consensus         1 m~~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            1 MRGIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            444789999999999999998876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.23  E-value=0.00019  Score=46.00  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|++.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.23  E-value=0.00019  Score=46.81  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++++|++|+|||||+..++..
T Consensus        27 ~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           27 TEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.23  E-value=0.00028  Score=51.80  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+.|+|++|+|||||++.+.+...+
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~p  338 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999999986543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.23  E-value=0.00023  Score=45.15  Aligned_cols=23  Identities=39%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|+|.|++||||||+.+.|...
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            56899999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.21  E-value=0.0002  Score=45.98  Aligned_cols=20  Identities=35%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      ++++|++|+|||||+..+..
T Consensus        23 ~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           23 TQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999987

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.21  E-value=0.00029  Score=48.52  Aligned_cols=25  Identities=48%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      |...|+|+|++|||||||...|...
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999988863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.20  E-value=0.00024  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +.|++.|++||||||+.+.+..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.20  E-value=0.00028  Score=43.60  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.20  E-value=0.00024  Score=45.16  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -.+++.|++|+|||+|+..+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999888643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.19  E-value=0.00015  Score=45.32  Aligned_cols=21  Identities=43%  Similarity=0.518  Sum_probs=15.3

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|++.|.+||||||+.+.|..
T Consensus         7 ~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             EEEEECCC----CHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.19  E-value=0.00025  Score=52.70  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=21.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~~p  407 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFYDV  407 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC
Confidence            5789999999999999999986543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.19  E-value=0.00018  Score=47.75  Aligned_cols=21  Identities=19%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .|+++|++||||||+.+.+..
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.18  E-value=0.00023  Score=46.60  Aligned_cols=23  Identities=30%  Similarity=0.327  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|++.|++||||||+++.+...
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999998874

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.17  E-value=0.00024  Score=49.69  Aligned_cols=19  Identities=37%  Similarity=0.527  Sum_probs=17.4

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      .+|+|++|+|||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4699999999999999887

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.16  E-value=0.00025  Score=45.61  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|++.|++||||||+.+.+...
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999988763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.00034  Score=52.13  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|+|||||++.+.+...+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            689999999999999999987654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.15  E-value=0.0003  Score=49.19  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALC   23 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~   23 (135)
                      ..||+++|.+||||||+++.+.
T Consensus        33 ~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHHH
Confidence            3699999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.15  E-value=0.0002  Score=52.93  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~~p  393 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFYDV  393 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            5789999999999999998886543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.13  E-value=0.00025  Score=49.85  Aligned_cols=21  Identities=52%  Similarity=0.656  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -++++|++|+|||||++.+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.13  E-value=0.00037  Score=48.28  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +.-|+|+|++|||||||...|...
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCcCcHHHHHHHHHHH
Confidence            346899999999999999988864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.13  E-value=0.00026  Score=47.77  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        56 ~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           56 GLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.13  E-value=0.00027  Score=45.57  Aligned_cols=22  Identities=32%  Similarity=0.288  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++|.|++|+|||++++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.11  E-value=0.00028  Score=47.27  Aligned_cols=22  Identities=45%  Similarity=0.631  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.09  E-value=0.00031  Score=46.32  Aligned_cols=22  Identities=45%  Similarity=0.617  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        41 ~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.09  E-value=0.0003  Score=52.14  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|+|||||++.+.+...+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCccC
Confidence            5789999999999999999886543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.07  E-value=0.00031  Score=47.72  Aligned_cols=22  Identities=41%  Similarity=0.637  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            4899999999999999999874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.05  E-value=0.0003  Score=47.16  Aligned_cols=20  Identities=35%  Similarity=0.361  Sum_probs=18.4

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      ++|+|++|+|||||+..++.
T Consensus        33 ~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           33 GALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999998885

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.05  E-value=0.00031  Score=47.61  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++.||+|+|||+|++.+...
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677899999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.04  E-value=0.00049  Score=45.49  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +.|.|.|++||||||+.+.|..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.03  E-value=0.00035  Score=47.76  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||+|++.+...
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999998874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.00  E-value=0.0006  Score=43.45  Aligned_cols=23  Identities=26%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +.|.+.|.+||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.99  E-value=0.0005  Score=46.31  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +.|+|.|++||||||+.+.|..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998873

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.99  E-value=0.0068  Score=38.31  Aligned_cols=67  Identities=7%  Similarity=-0.079  Sum_probs=47.2

Q ss_pred             eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~  122 (135)
                      .+.+-|.|+|+..  .......+..+|.++++...+..+  ..+...++.+..... .++.++.+|.|+.+.
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~  142 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE  142 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            4678899999865  234456677899999999876544  666666666654321 235678999999984

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.98  E-value=0.00052  Score=44.08  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      ..|+|+|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999998753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.98  E-value=0.00044  Score=46.81  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        69 ~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999876653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.98  E-value=0.00052  Score=44.03  Aligned_cols=19  Identities=37%  Similarity=0.496  Sum_probs=16.9

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      .+|+|++|+||||++..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4789999999999999775

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.97  E-value=0.00039  Score=47.28  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.8

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .++++|++|+||||++..+..
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.96  E-value=0.00049  Score=53.79  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.++|++|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999997543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.96  E-value=0.00034  Score=45.16  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||+++..++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999998888763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.96  E-value=0.0004  Score=48.12  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|.|++|+|||+|++.+...
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.95  E-value=0.00036  Score=54.49  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      .+.|+|++|+|||||++.+.+...
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.95  E-value=0.00049  Score=46.42  Aligned_cols=22  Identities=45%  Similarity=0.736  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        52 ~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.95  E-value=0.00046  Score=47.54  Aligned_cols=22  Identities=36%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      +++.||+|+||||+++.+.+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.95  E-value=0.0005  Score=47.00  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+++|++|+||||++..+...
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHH
Confidence            4789999999999999988753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.94  E-value=0.00049  Score=46.54  Aligned_cols=23  Identities=43%  Similarity=0.582  Sum_probs=20.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .+++.|++|+|||++++.+....
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHHH
Confidence            58999999999999999988753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.94  E-value=0.00049  Score=47.86  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++|.|++|+|||++++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.94  E-value=0.00056  Score=45.59  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      -.+++.|++|+|||++++.+...
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999999874

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.93  E-value=0.00069  Score=47.23  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALC   23 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~   23 (135)
                      .+||+++|..+|||||+++.+.
T Consensus         9 ~~k~lllG~~~sGKsT~~kq~~   30 (354)
T 2xtz_A            9 IRKLLLLGAGESGKSTIFKQIK   30 (354)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEECCCCCcHHHHHHHHH
Confidence            4799999999999999998665

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0005  Score=49.09  Aligned_cols=21  Identities=38%  Similarity=0.670  Sum_probs=19.6

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |++.||||+|||+|++.+.+.
T Consensus       209 iLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.00053  Score=44.73  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=17.3

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      ++++|++|+|||+|+..++.
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999877654

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.91  E-value=0.0022  Score=46.08  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=35.9

Q ss_pred             EEEECCCCCChHHHHHHHhc------------------CCCC---CCccCCcceeEEEEEeee-ecCCceEEEEEEecCC
Q psy10117          5 ILILGPIMAGKTVLANALCD------------------LTTA---EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSG   62 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~------------------~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g   62 (135)
                      |.|+|+.++|||+|+|.++.                  ..+.   .....|.|+-+....+.. ..++..+.+-+.||.|
T Consensus        70 vsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG  149 (457)
T 4ido_A           70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG  149 (457)
T ss_dssp             EEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECC
T ss_pred             EEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccC
Confidence            55999999999999995541                  1111   112345554322111111 2245678899999999


Q ss_pred             Cc
Q psy10117         63 DH   64 (135)
Q Consensus        63 ~~   64 (135)
                      ..
T Consensus       150 ~~  151 (457)
T 4ido_A          150 TF  151 (457)
T ss_dssp             BT
T ss_pred             CC
Confidence            54

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.90  E-value=0.00059  Score=48.50  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+++|++||||||+.+.+...
T Consensus       260 lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          260 VVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             EEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.00056  Score=48.93  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|++.||||+|||+|++.+.+.
T Consensus       217 GvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          217 GALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eeEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.89  E-value=0.00055  Score=46.98  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||+|++.+...
T Consensus        47 ~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           47 GILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4899999999999999999874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.89  E-value=0.00063  Score=44.48  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..|.|+|++||||||+.+.+..
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998885

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.87  E-value=0.0007  Score=46.85  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|+||+|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.87  E-value=0.00068  Score=46.54  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|+||+|||||+|...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4678999999999999999864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.00062  Score=48.76  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|++.||||+|||+|++.+.+.
T Consensus       217 GvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          217 GVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999874

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.85  E-value=0.00064  Score=49.07  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +++++|++|+|||++++.+...
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.85  E-value=0.00056  Score=47.56  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      +.|+|++|+|||||+..++...
T Consensus       134 ~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          134 TEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999998754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.83  E-value=0.001  Score=45.59  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|+||+|||||+|...+...
T Consensus        12 ~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            4789999999999999999864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.83  E-value=0.00067  Score=46.63  Aligned_cols=21  Identities=38%  Similarity=0.414  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.82  E-value=0.00064  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -++++||+|+|||+|++.+.+..
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            47899999999999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.82  E-value=0.00076  Score=46.20  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        53 ~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           53 GILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999874

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.81  E-value=0.00078  Score=46.55  Aligned_cols=19  Identities=37%  Similarity=0.496  Sum_probs=16.8

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      .+|+|++|+||||++..+.
T Consensus        26 ~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3699999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.81  E-value=0.0009  Score=43.88  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +++.++|++||||||+...|..
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            6889999999999999998875

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.00073  Score=47.86  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|++.||||+|||.|++.+.+.
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEeCCCCCCHHHHHHHHHHh
Confidence            4899999999999999999874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.80  E-value=0.00095  Score=46.53  Aligned_cols=22  Identities=27%  Similarity=0.706  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .+|+++|++|+||||+.+.+..
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999987764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.78  E-value=0.00063  Score=47.19  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.78  E-value=0.0003  Score=46.68  Aligned_cols=21  Identities=43%  Similarity=0.694  Sum_probs=19.1

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +++.|++|+|||++++.+...
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.77  E-value=0.00069  Score=46.95  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||++++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.77  E-value=0.00018  Score=47.16  Aligned_cols=22  Identities=23%  Similarity=0.166  Sum_probs=18.9

Q ss_pred             EEECCCCCChHHHHHHHhcCCC
Q psy10117          6 LILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~~~~~   27 (135)
                      +|+||+|+|||||++.+.+...
T Consensus        31 ~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           31 TLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHhcccc
Confidence            4789999999999999987544

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.77  E-value=0.00066  Score=46.56  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=18.1

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      .+|+|++|+|||+|+..+..
T Consensus        27 ~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           27 TAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEECCTTTCSTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            57999999999999999873

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.76  E-value=0.00073  Score=49.42  Aligned_cols=19  Identities=26%  Similarity=0.371  Sum_probs=0.0

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      ++|+|++|+|||||++.++
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.76  E-value=0.00093  Score=45.62  Aligned_cols=23  Identities=22%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      -.+++.|++|+|||+|+..+...
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.76  E-value=0.00083  Score=46.08  Aligned_cols=22  Identities=45%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.75  E-value=0.00079  Score=49.03  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.74  E-value=0.00089  Score=45.77  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            3789999999999999998864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.74  E-value=0.0011  Score=41.93  Aligned_cols=21  Identities=38%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++|+|+++||||++...+...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.74  E-value=0.00097  Score=46.59  Aligned_cols=20  Identities=40%  Similarity=0.197  Sum_probs=18.1

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      .+++|++|+||||++..+..
T Consensus        29 ~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           29 TGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            57999999999999998874

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.73  E-value=0.00051  Score=50.61  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      ..++++|++|||||||++.|.+..
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhh
Confidence            358899999999999999998753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.73  E-value=0.00085  Score=48.05  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||+|++.+.+.
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.72  E-value=0.00093  Score=46.45  Aligned_cols=22  Identities=50%  Similarity=0.845  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||++.+.+...
T Consensus        53 ~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           53 NILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.72  E-value=0.00091  Score=46.52  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|++.|++|+|||+|++.+...
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.70  E-value=0.0011  Score=46.38  Aligned_cols=22  Identities=41%  Similarity=0.747  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.|++|+|||++++.+...
T Consensus        74 ~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.70  E-value=0.0011  Score=43.94  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .+++.|++|+|||++++.+....
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CEEEECCCCCcHHHHHHHHHHhc
Confidence            58999999999999999998753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.70  E-value=0.00096  Score=48.30  Aligned_cols=22  Identities=45%  Similarity=0.652  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++.||+|+|||+|++.+.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-14
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-13
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-13
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-12
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-12
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-11
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-11
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-10
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-08
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-08
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-07
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-07
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	7e-07
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-07
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-06
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-06
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-06
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-06
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-06
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-06
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-06
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-06
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-06
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-05
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-05
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-05
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-05
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-05
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-05
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-05
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-04
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-04
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-04
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-04
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.002
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	0.002
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	0.003
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (157), Expect = 1e-14
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 2/114 (1%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
            K+L++G    GKT +     +      +  T G+       +  LD  + ++++WDT+G
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF--KIRTIELDGKRIKLQIWDTAG 64

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
             +F ++  A+ R   GI+ V++         +  +       +  +  K +L 
Sbjct: 65  QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 118

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (151), Expect = 8e-14
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          +KIL++G    GK+ L     +      +  T G+       +  ++  K ++++WDT+G
Sbjct: 3  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQIWDTAG 60

Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F ++  A+ R   GII V++
Sbjct: 61 QERFRTITTAYYRGAMGIILVYD 83

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (148), Expect = 3e-13
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           K+L++G    GK+ L     D T   +Y  T GV       +  LD    ++++WDT+G
Sbjct: 7  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF--KIKTVELDGKTVKLQIWDTAG 64

Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F ++  ++ R  HGII V++
Sbjct: 65 QERFRTITSSYYRGSHGIIIVYD 87

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 5e-13
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI--------VECEHSYALDTSKTE 54
           IK+L LG    GKT       D     ++  T G+           +  +  +    K  
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 55  IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL 114
           ++LWDT+G  +F S+  AF RD  G + +F+         +  +       +   N   +
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 115 LIDN 118
           LI N
Sbjct: 126 LIGN 129

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 3e-12
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           KILI+G    GKT       D +    +  T G+       +   +  + ++++WDT+G 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYRNDKRIKLQIWDTAGQ 64

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
            ++ ++  A+ R   G I +++       + +  +     T S  N    L+ + 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 119

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 5e-12
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +KILI+G    GK+ L     D T   E   T GV       + ++D +K ++ +WDT+G
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISVDGNKAKLAIWDTAG 65

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
             +F ++ P++ R   G+I V++        +L  + +   T    N+   +L+ N
Sbjct: 66  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 5e-11
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           KI+++G    GKT L               T GV       +  ++  K ++++WDT+G
Sbjct: 6  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF--MIKTVEINGEKVKLQIWDTAG 63

Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F S+  ++ R  + +I  ++
Sbjct: 64 QERFRSITQSYYRSANALILTYD 86

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 6e-11
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K L++G    GK+ L +   +    ++ + T GV       +        ++++WDT+G 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV--GGKYVKLQIWDTAGQ 64

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL 115
            +F SV  ++ R   G + V++       + L  +       +  N    L 
Sbjct: 65  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 116

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 3e-10
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 1/111 (0%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K++++G    GKT L     D         +  V I        +D  K ++++WDT+G 
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFIST-VGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL 114
            +F SV  A+ RD H ++ +++         +  +       +  +    L
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 117

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 3e-08
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K++++G    GK+ L +         E   T GV       S  +D    + ++WDT+G 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDTAGQ 63

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
            ++  +  A+ R   G + V++         +  +       +D +N   +L+ N
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGN 117

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L +   +   +++Y  T G   +  E +         +++WDT+G
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQVWDTAG 61

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC 113
             +F+S+  AF R     + V++         +  + D F+  +++N+ + 
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 112

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 4e-08
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
            KI+++G    GKT L    C     +    T GV   E       +  K ++       
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW-DTAGQ 61

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121
           +   +S+   + R+VH ++FV++         L  + +        N+   +L+ N   
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 45.7 bits (107), Expect = 1e-07
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++ILILG   AGKT +   L          PT G  +    +         ++ +WD  
Sbjct: 17  ELRILILGLDGAGKTTILYRLQI-GEVVTTKPTIGFNVETLSY------KNLKLNVWDLG 69

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G       W  +  D   +IFV +S     +S         + + +L +   L+ 
Sbjct: 70  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 124

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 2e-07
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          +KIL+LG   +GK+     +  +       PT+G+   + E            ++ D  G
Sbjct: 3  VKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHEYDFEIKN------VPFKMVDVGG 53

Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
                 W      V  I+F+ +
Sbjct: 54 QRSERKRWFECFDSVTSILFLVS 76

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          ++L+LG   +GK+ +   +           T G+   +          K    ++D  G 
Sbjct: 8  RLLLLGAGESGKSTIVKQMRI----LHVVLTSGIFETK------FQVDKVNFHMFDVGGQ 57

Query: 64 HKFESVWPAFQRDVHGIIFVFNS 86
                W     DV  IIFV  S
Sbjct: 58 RDERRKWIQCFNDVTAIIFVVAS 80

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 7e-07
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 3/115 (2%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K +I+G    GK+ L     D      +  T GV       +      K +I  WDT+G 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI--WDTAGQ 62

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
             F S+  ++ R   G + V++       + L  + +     S  +N   +LI N
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGN 116

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 9e-07
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K++ LG    GKT L       +    Y  T  + I     +  L+     ++LWDT+G 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQAT--IGIDFLSKTMYLEDRTIRLQLWDTAGQ 59

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL 114
            +F S+ P++ RD    + V++        +   + D   T+   +    L
Sbjct: 60  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 110

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 4  KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
          K+++LG    GKT L    C+    +++  T G   +  + +         I  WDT+G 
Sbjct: 5  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAI--WDTAGQ 62

Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
           +F ++ P + RD +G I V++
Sbjct: 63 ERFHALGPIYYRDSNGAILVYD 84

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           K +I+G +  GK+ L +   +     +   T GV          +   K ++++WDT+G
Sbjct: 5  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF--GTRIIEVSGQKIKLQIWDTAG 62

Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
            +F +V  ++ R   G + V++
Sbjct: 63 QERFRAVTRSYYRGAAGALMVYD 85

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++IL+LG   AGKT +   L    +                 +        +  +WD  
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV-------KFNVWDVG 64

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  K   +W  +     G+IFV +      I E        +   ++ +   L+  N
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 1e-06
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K++ILG    GKT L N   +   + +Y  T G   +  E          +I  WDT+G
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI--WDTAG 60

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC 113
             +F+S+  AF R     + VF+   P     L  + D F+ Q+   + + 
Sbjct: 61  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 111

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K+++LG    GK+ L          E    T G   +         T K EI  WDT+G 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI--WDTAGQ 65

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL 114
            ++ S+ P + R     I V++       +    +      Q+  N    L
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 2e-06
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           ++++L+LG   AGKT +          +   PT G  I   EH         ++ +WD  
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNG-EDVDTISPTLGFNIKTLEHRG------FKLNIWDVG 54

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G     S W  +     G+I+V +S     + +        + +  L     L+ 
Sbjct: 55  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 109

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 3e-06
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + K+++LG    GK+ L       T  E+Y PT             +D+S + +E+ DT+
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF---YRKEIEVDSSPSVLEILDTA 59

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  +F S+   + ++  G I V++        ++    D  +          +L+ N
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 1   MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
           ++ K++I+G    GKT L          E Y PT             +D  + E+ LWDT
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF---ENYVADIEVDGKQVELALWDT 57

Query: 61  SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC 113
           +G   ++ + P    D   I+  F+   P  +  +   +   V     N    
Sbjct: 58  AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 110

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 41.8 bits (97), Expect = 3e-06
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K++++G    GK+ L          E+Y PT+            LD  + +I++ DT+G 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVLDGEEVQIDILDTAGQ 62

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
             + ++   + R   G + VF+       +    F +  +   +  N   LL+ N
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 9e-06
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           ++IL++G   AGKT +   L                      + +          WD  G
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV-------WDVGG 53

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
             K   +W  + ++  G+IFV +S     ++E        + + +L +   L+ 
Sbjct: 54  QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 9e-06
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 3  IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
          IK+++LG    GK+ +         AE   PT G   +    +   +    + E+WDT+G
Sbjct: 4  IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI--NEHTVKFEIWDTAG 61

Query: 63 DHKFESVWPAFQRDVHGIIFVFNS 86
            +F S+ P + R+    + V++ 
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDV 85

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + K++++G    GK+ L   L      +EY PT      +             +++ DT+
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID---GETCLLDILDTA 59

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  ++ ++   + R   G + VF         ++  + +      D ++   +L+ N
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           K +++++G    GK+ L           +Y PT      +             +++ DT+
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVID---DRAARLDILDTA 61

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G  +F ++   + R   G + VF+    G   E+  F    +   D +    +LI
Sbjct: 62  GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILI 116

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-05
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
            K+++LG    GK+ L N         +   T GV  +  +          +I  WDT+G
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI--WDTAG 64

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
             +F S+   F R     +  F+         L  +   F+  +D+   +    
Sbjct: 65  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
          + IK++++G    GK+ +    C     ++Y  T GV  +E +     +     + LWDT
Sbjct: 1  VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV--NDEDVRLMLWDT 58

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
          +G  +F+++  A+ R     + VF+
Sbjct: 59 AGQEEFDAITKAYYRGAQACVLVFS 83

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K++++G    GK+ L           +Y PT             +D     +++ DT+G 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI---EDSYLKHTEIDNQWAILDVLDTAGQ 62

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
            +F ++   + R   G + V++         +  F+   +   D  +   +L+ N
Sbjct: 63  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 117

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          ++K+L+LG   +GK+ +   +  +          G+                  +++D  
Sbjct: 2  EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHFTFKD------LHFKMFDVG 50

Query: 62 GDHKFESVWPAFQRDVHGIIFVFNS 86
          G       W      V  IIF    
Sbjct: 51 GQRSERKKWIHCFEGVTAIIFCVAL 75

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-05
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           + K+++LG    GK+ L          E+Y PT      +          +  +E+ DT+
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD---CQQCMLEILDTA 59

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G  +F ++   + ++  G   V++       ++L    +  +   D  +   +L+
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILV 114

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          ++K+L+LG   +GK+     +  +       PT G+     +             + D  
Sbjct: 2  ELKLLLLGTGESGKSTFIKQMRIIH--GSGVPTTGIIEYPFDLQS------VIFRMVDVG 53

Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
          G       W     +V  I+F+  
Sbjct: 54 GQRSERRKWIHCFENVTSIMFLVA 77

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 1   MK-IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWD 59
           M+ IK +++G    GKT L  +        EY PT          +  +      + L+D
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAVTVMIGGEPYTLGLFD 57

Query: 60  TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL 115
           T+G   ++ + P         +  F+   P     +   +   +T         L+
Sbjct: 58  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLV 113

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (85), Expect = 1e-04
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 4   KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
           K+L LG   AGKT L + L +        PT      E            +   +D  G 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKN-DRLATLQPTWHPTSEELAI------GNIKFTTFDLGGH 54

Query: 64  HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL 115
            +   +W  +  +V+GI+F+ ++  P    E  +  D     ++L +   ++
Sbjct: 55  IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           ++K+ +LG    GK+ +     + +     +PT G   +     Y  +  K  I  WDT+
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI--WDTA 61

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL 114
           G  +F ++ P + R     I V++       S L  +          +    +
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 114

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           +++IL+LG   AGKT L   L     +                 +       ++ +WD  
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF-------KLNVWDIG 68

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G  K    W ++  +   +I+V +S       E        + +  L+    L+ 
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 7e-04
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 1  MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
          +K KI+++G    GKT L +        E Y PT          S+ +DT + E+ LWDT
Sbjct: 1  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDT 57

Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
          SG   +++V P    D   ++  F+
Sbjct: 58 SGSPYYDNVRPLSYPDSDAVLICFD 82

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 8e-04
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
             K++++G    GK+ L           +Y PT            ++D     +++ DT+
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI---EDSYTKICSVDGIPARLDILDTA 62

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G  +F ++   + R  HG + VF        +E+   +   +   D ++   +L+
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 117

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 8e-04
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
           ++++ ++G   +GKT   N +      E+  PT G  + +             I+LWD  
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN------VTIKLWDIG 55

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
           G  +F S+W  + R V  I+++ ++     I          + +  L     L++
Sbjct: 56  GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 110

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 2  KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
          + K++I+G   AGKT +                         ++           +WD  
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-------RFLMWDIG 67

Query: 62 GDHKFESVWPAFQRDVHGIIF 82
          G     S W  +  +   +I 
Sbjct: 68 GQESLRSSWNTYYTNTEFVIV 88

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
           +K+ I G    GK+ L           EY PT    +       A    +        + 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT----LESTYRHQATIDDEVVSMEILDTA 58

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
             +         R   G + V++    G   E+L   +         N   +L+ N
Sbjct: 59  GQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 114

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 3   IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
            ++ + G    GK+ L       T  E Y PT      +         S   +++ DT+G
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD---KSICTLQITDTTG 59

Query: 63  DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFV-TQSDLNNHKCLLIDN 118
            H+F ++        H  I V++      + EL   Y+     + D+ +   +L+ N
Sbjct: 60  SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 116

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.004
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 2   KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
             KI ILG    GK+ L     +    + Y PT             ++  +  ++L DT+
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI---ENTFTKLITVNGQEYHLQLVDTA 60

Query: 62  GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
           G  ++      +  D++G I V++         + + +   +          +L+ N
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.98
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.91
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.88
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.84
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.83
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.74
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.74
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.74
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.73
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.7
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.66
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.65
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.63
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.6
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.58
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.54
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.53
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.5
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.46
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.42
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.32
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.3
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.2
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.1
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.05
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.03
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.99
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.85
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.74
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.59
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.43
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.24
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.21
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.17
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.12
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.08
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.07
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.06
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.04
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.02
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.01
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.01
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.01
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.01
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.99
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.92
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.92
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.91
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.9
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.9
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.89
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.88
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.88
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.86
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.86
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.84
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.83
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.83
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.82
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.81
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.8
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.8
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.8
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.8
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.78
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.78
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.77
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.77
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.76
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.75
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.74
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.72
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.72
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.71
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.7
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.7
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.69
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.68
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.66
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.66
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.66
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.65
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.64
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.61
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.61
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.6
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.58
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.53
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.49
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.49
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.49
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.48
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.43
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.43
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.39
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.37
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.36
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.32
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.31
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.31
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.25
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.25
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.24
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.23
d1okkd2	207	GTPase domain of the signal recognition particle r	97.22
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.2
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.2
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.19
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.19
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.19
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.19
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.16
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.16
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.16
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.07
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.01
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.0
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.98
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.98
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.96
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.96
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.96
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.93
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.91
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.8
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.8
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.78
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.77
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.71
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.69
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.69
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.68
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.66
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.66
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.61
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.58
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.43
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.42
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.41
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.36
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.36
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.33
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.32
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.29
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.27
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.22
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.2
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.18
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.12
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.08
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.04
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.03
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.99
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.97
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.89
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.7
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.66
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.65
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.56
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.03
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.81
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.74
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.74
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	94.67
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.65
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	94.62
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.6
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.58
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.46
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.76
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.02
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	93.0
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.79
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.67
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.55
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.46
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.21
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.12
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.9
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.42
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.35
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.27
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.85
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.81
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.77
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	88.25
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.0
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.54
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.47
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.2
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.52
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	85.54
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	85.36
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	84.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	84.6
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.22
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	83.52
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.21
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	82.93
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.56
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	81.18

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=176.44  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=103.0

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      +++||+++|++|||||||+++++++.+...+.||++.++......  .++..+.+.+||++|++.+..++..++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~--~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   79 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH--TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   79 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEEC--BTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccc--cccccccccccccccccccceecchhcccccch
Confidence            489999999999999999999999999999999999887665554  455789999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||+++++||+++..|+..+.+...  ++|+++||||+|.
T Consensus        80 ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~piilvgnK~Dl  119 (170)
T d1i2ma_          80 IIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVDI  119 (170)
T ss_dssp             EEEEETTSGGGGTTHHHHHHHHHHHHC--SCCEEEEEECCCC
T ss_pred             hhccccccccccchhHHHHHHHhhccC--CCceeeecchhhh
Confidence            999999999999999999999887654  8999999999994

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-32  Score=171.11  Aligned_cols=118  Identities=20%  Similarity=0.409  Sum_probs=107.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      |.+||+++|++|||||||+++|.++.+...+.||++.+.......  ..+..+.+.+||++|++.+...+..++++++++
T Consensus         1 ~~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   78 (164)
T d1z2aa1           1 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ--VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   78 (164)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEE--ETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeee--ecCceeeeeeeccCCccchhhhhhhhhccCceE
Confidence            578999999999999999999999999999999999877666554  345788999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||+++++||+++..|++++.++.+  ++|+++||||+|.
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~iilVgnK~Dl  118 (164)
T d1z2aa1          79 VLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDL  118 (164)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHC--SCCEEEEEECGGG
T ss_pred             EEEEeccchhhhhhcccccccccccCC--CceEEEeeccCCc
Confidence            999999999999999999999987655  7999999999994

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=171.03  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=106.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++++.+...+.||.+.++.   .....++..+.+.+||++|.+.+..++..+++.+++++
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~---~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT---KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE---EEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc---eEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            479999999999999999999999998889999988642   22344568899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+.+..|+.++.+.....++|+++||||+|.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  121 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL  121 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTC
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccc
Confidence            99999999999999999999988776678999999999994

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.9e-32  Score=170.60  Aligned_cols=118  Identities=17%  Similarity=0.290  Sum_probs=105.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.|+.+..+.   .....++..+.+++||++|++.+..++..+++++++++
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL---KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE---EEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccc---cccccccccccccccccccccccccchhhhhhhccEEE
Confidence            489999999999999999999999998888899886442   22344568899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..|+.++.+.....+.|++++|||+|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  121 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL  121 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccch
Confidence            99999999999999999999988766668999999999994

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-31  Score=168.15  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=106.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+...+.++.+..+.   .....+...+.+.+||++|++.+...+..+++++++++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~---~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR---KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE---EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc---eeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            489999999999999999999999999999999886542   23345568899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..|+..+.+....+++|+++||||+|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl  120 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL  120 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCc
Confidence            99999999999999999999987666668999999999994

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-31  Score=169.28  Aligned_cols=118  Identities=25%  Similarity=0.317  Sum_probs=99.9

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      ++.||+++|++|||||||++++.++.+...+.||.+....   .....+...+.+++||++|++.+...+..++++++++
T Consensus         1 ~r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~---~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   77 (177)
T d1kmqa_           1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI   77 (177)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecc---ccccccccceeeeccccCccchhcccchhhcccchhh
Confidence            5899999999999999999999999999889999875332   2223445788999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||+++++||+++..|...+..... +++|++|||||+|.
T Consensus        78 ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl  118 (177)
T d1kmqa_          78 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL  118 (177)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGG
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccc
Confidence            999999999999998765544444332 47999999999994

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.98  E-value=5.4e-32  Score=169.79  Aligned_cols=117  Identities=21%  Similarity=0.307  Sum_probs=102.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|+++||||||+++++.+.+...+.||.+.++.   .....++..+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~---~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR---KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc---cccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            79999999999999999999999999999999987543   223445678999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+.+..|++++.+.....++|+++||||+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl  121 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  121 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccc
Confidence            9999999999999999999988766678999999999994

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=167.55  Aligned_cols=116  Identities=14%  Similarity=0.136  Sum_probs=86.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      |||+++|++|||||||++++.+..+.. +.++.+..+ .  .....++..+.+.+||++|++.++.++..+++++|++++
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~-~--~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~il   77 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-D--RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   77 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEE-E--EEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeee-c--ceeeccccccceeeeecccccccceecccchhhhhhhce
Confidence            799999999999999999999876543 334444432 2  223445678999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+.++........+|+++||||+|.
T Consensus        78 v~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  117 (168)
T d2gjsa1          78 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL  117 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC
T ss_pred             eccccccccccccccccchhhcccccccceEEEeecccch
Confidence            9999999999999999999988776678999999999994

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=165.48  Aligned_cols=118  Identities=21%  Similarity=0.311  Sum_probs=104.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++++.+...+.++.+..+ ..  ....++..+.+.+||++|++.+...+..+++++++++
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~--~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RK--EIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EE--EEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeee-ee--eeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            49999999999999999999999999888889888532 22  2244567899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+.+....+++|++|||||+|.
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl  120 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccch
Confidence            99999999999999999999887666678999999999994

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=168.41  Aligned_cols=118  Identities=21%  Similarity=0.285  Sum_probs=102.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +|||+++|++|||||||+++++++.+...+.||.+..+..   ....++..+.+.+||++|++.+...+..+++.+++++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~---~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   78 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ---VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI   78 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE---EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecccc---ceeeccccceeccccccccccccccccccccceeEEE
Confidence            5899999999999999999999999988899999865432   2234567889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhcc-CCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQS-DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+..+.+.. ...++|+++||||+|.
T Consensus        79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl  120 (171)
T d2erxa1          79 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE  120 (171)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred             EEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccc
Confidence            9999999999999999998887643 3457899999999994

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=167.56  Aligned_cols=117  Identities=21%  Similarity=0.249  Sum_probs=101.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++++.+...+.||++.++...   ...++..+.+++||++|++.+. .+..+++.+++++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~---~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~i   77 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ---ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFV   77 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE---EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc---ccccccceEEEEeecccccccc-cchhhhcccccce
Confidence            68999999999999999999999999999999999865433   2345678999999999998875 4677899999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|...+.......+.|+++||||+|.
T Consensus        78 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl  118 (168)
T d2atva1          78 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL  118 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred             eecccCCccchhhhhhhcccccccccccCcceeeeccchhh
Confidence            99999999999999998877766666568999999999994

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.8e-31  Score=166.08  Aligned_cols=118  Identities=19%  Similarity=0.307  Sum_probs=103.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++++.+...+.++..... ...  ...++..+.+.+||++|++++...+..+++++++++
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~--~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKI--CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE-EEE--EEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccce-eeE--eccCCeeeeeeccccccccccccccchhhccceeee
Confidence            47999999999999999999999999888888865432 233  334567899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+.+..|+..+.+.....++|+++||||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  123 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  123 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeech
Confidence            99999999999999999999887666668999999999994

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=167.03  Aligned_cols=118  Identities=20%  Similarity=0.358  Sum_probs=101.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+...+.|+.+...   ......++..+.+.+||++|++.+...+..+++.+++++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~---~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY---TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE---EEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce---eeeeeecccccccccccccccccccccccccccccceEE
Confidence            68999999999999999999999999888889887533   223344567899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+.+..|+.++.+.......|+++||||+|.
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl  122 (171)
T d2erya1          82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL  122 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTC
T ss_pred             EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccch
Confidence            99999999999999999999887766668999999999994

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=167.29  Aligned_cols=118  Identities=19%  Similarity=0.354  Sum_probs=98.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.|+.+..+......  .++..+.+.+||++|++.++.++..+++++++++
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN--IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   80 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEE--SSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeec--cCCccceeeeeccCCcceecccchhhccCCceeE
Confidence            58999999999999999999999999999999998876665553  3457889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..|++.+..... ...|+++||||+|.
T Consensus        81 ~v~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl  120 (167)
T d1z08a1          81 LVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDL  120 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGG
T ss_pred             EEEeCCchhHHHhhhhhhhhcccccc-cccceeeecccccc
Confidence            99999999999999999988765543 47899999999993

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-31  Score=165.69  Aligned_cols=118  Identities=18%  Similarity=0.303  Sum_probs=106.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+++||||||+++|+++.+...+.++.+..+..   .....+..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK---QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE---EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc---ceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            5899999999999999999999999999899999875433   2334457899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+.+....+++|+++||||+|.
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL  120 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTC
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccc
Confidence            99999999999999999999988777678999999999994

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.7e-31  Score=166.03  Aligned_cols=118  Identities=26%  Similarity=0.408  Sum_probs=100.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      +++||+++|++|||||||+++++.+.++..+.||.+.... ..  ...++..+.+++||++|++.+...+..++++++++
T Consensus         1 ~~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   77 (179)
T d1m7ba_           1 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-AS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   77 (179)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EE--EECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeccc-cc--ccccceEEeeccccccccccccccccchhhhhhhh
Confidence            5899999999999999999999999999889998875332 22  23456889999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||+++++||+.+..|......... +++|+++||||+|.
T Consensus        78 ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl  118 (179)
T d1m7ba_          78 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDL  118 (179)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGG
T ss_pred             heeeecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccc
Confidence            999999999999999766555443322 38999999999994

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=166.17  Aligned_cols=118  Identities=19%  Similarity=0.298  Sum_probs=105.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++.......  ++..+.+.+||++|++.+..++..+++++++++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI--NGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEE--CCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            489999999999999999999999998888898888776666543  457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.+|+.+..|+..+.+... ...|+++||||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~  122 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDL  122 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             Eeeecccchhhhhhhhhhhhhccccc-ccccEEEEEeeccc
Confidence            99999999999999999998866543 47899999999993

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=162.79  Aligned_cols=115  Identities=21%  Similarity=0.429  Sum_probs=105.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+++||||||++++.++.+...+.||.+.++.....      ..+.+++||++|++.+...+..++..+++++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   75 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK------GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE------TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeee------eeEEEEEeeccccccccccccccccccchhh
Confidence            6899999999999999999999999988899999987765554      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++.++|+++..|+..+.+....++.|+++|+||+|.
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl  116 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL  116 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred             cccccccccccchhhhhhhhhhhhhcccCCcEEEEEecccc
Confidence            99999999999999999999888776678999999999994

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.4e-30  Score=163.33  Aligned_cols=118  Identities=21%  Similarity=0.346  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.+.......  .....+.+++||++|++.+..++..+++++++++
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY--RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEE--eecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            47999999999999999999999999888889998776655553  3446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++++..+..|+..+.... ..+.|++++|||+|.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~  122 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDM  122 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTC
T ss_pred             EEEECccchhhhhhhhhhhhhhccc-CCcceEEEEEeeccc
Confidence            9999999999999999988775544 358999999999994

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=162.15  Aligned_cols=117  Identities=22%  Similarity=0.388  Sum_probs=105.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      |||+++|++|||||||++++.++.+...+.++.+.........  .++..+.+.+||++|++.+...+..++++++++++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il   78 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY--LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVV   78 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE--CSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeec--cCCCceeeeecccCCcchhccchHHHhhccceEEE
Confidence            6999999999999999999999999999999988766555543  34578999999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||++++++|+++..|+.++.+... +++|+++||||+|.
T Consensus        79 v~d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl  117 (164)
T d1yzqa1          79 VYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL  117 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTC
T ss_pred             eeccccccchhhhHhhHHHHHHhcC-CCceEEEEecccch
Confidence            9999999999999999999876654 48999999999994

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-30  Score=161.81  Aligned_cols=118  Identities=17%  Similarity=0.259  Sum_probs=105.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++..+.+...+.+|.+..+......  .+.....+.+||++|++.+..++..+++++++++
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ--YQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccc--ccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            58999999999999999999999999999999998866555443  4447788899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+..... .+.|+++||||+|.
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl  121 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL  121 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTC
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccC-CcceEEEecccchh
Confidence            99999999999999999988866554 58999999999995

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=163.42  Aligned_cols=118  Identities=21%  Similarity=0.311  Sum_probs=105.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +|||+++|++|||||||+++|.++.+...+.++.+..+......  .....+.+.+||++|++.+..++..+++++++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC--LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE--ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceee--ccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            68999999999999999999999999999999999876655553  3456789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++.++|+++..|...+.+... +++|+++||||+|.
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl  123 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADL  123 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccC-CCceEEeecccccc
Confidence            99999999999999999998866443 58999999999993

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=162.66  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=102.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.........  .++..+.+.+||++|++.|...+..+++.+++++
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ--VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEE--ETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEE--ECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            37999999999999999999999999888888887766555553  3457889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||..+..|+..+.++.. +++|+++||||+|.
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl  121 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDL  121 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecc
Confidence            99999999999999999999977655 57999999999995

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=165.42  Aligned_cols=116  Identities=19%  Similarity=0.226  Sum_probs=98.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++.+.+...+.||.+... ...  ....+..+.+++||++|++.+...+..+++++++++
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~--~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVS--VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEE--EESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-eEE--EeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            58999999999999999999999999988999987533 222  234457899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHH-HHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLL-FYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++.. |...+....  +++|+++||||+|.
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl  125 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDL  125 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTS
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcC--CCCCeeEeeecccc
Confidence            9999999999998865 544444343  48999999999994

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=160.48  Aligned_cols=118  Identities=20%  Similarity=0.329  Sum_probs=104.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++......  .++..+.+.+||++|++.++.++..+++.+++++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE--VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEE--ETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEE--ECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            37999999999999999999999999888888888776655554  3457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++.+||+.+..|+..+.+... ...|++++|||+|.
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl  121 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL  121 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhcc-ccceEEEEcccccc
Confidence            99999999999999999998866543 58899999999994

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=168.55  Aligned_cols=121  Identities=26%  Similarity=0.362  Sum_probs=107.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeee--------cCCceEEEEEEecCCCcccccchHHh
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA--------LDTSKTEIELWDTSGDHKFESVWPAF   73 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------~~~~~~~~~i~d~~g~~~~~~~~~~~   73 (135)
                      .+||+++|++|||||||+++++++.+...+.++.+.++........        .....+.+++||++|++.++.++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            4899999999999999999999999988888888887766655442        22345789999999999999999999


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++++++|||++++++|+.+..|+..+..+.....+|+++||||+|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl  133 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL  133 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccc
Confidence            9999999999999999999999999999877776678999999999994

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=164.57  Aligned_cols=116  Identities=17%  Similarity=0.206  Sum_probs=98.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++++.+.+...+.||.+.... ..  ...++..+.+++||++|+++|..++..+++++++++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~-~~--~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VT--VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EE--EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecc-ee--EeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            479999999999999999999999999999999885432 22  233457789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHH-HHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLF-YDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..| ...+....  ++.|+++||||+|.
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~i~lvgnK~Dl  119 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDL  119 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECGGG
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcC--CCCceEEEeccccc
Confidence            99999999999999765 44444333  48999999999994

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8e-30  Score=163.13  Aligned_cols=118  Identities=23%  Similarity=0.372  Sum_probs=104.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+|+|++|||||||++++.++.+...+.++.+..+.......  ++..+.+++||++|++++..++..+++++++++
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~--~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL--DGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE--TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEE--eeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            589999999999999999999999999999999988776555543  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|..+..|...+.+.. ..+.|+++||||+|.
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~  123 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDL  123 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTC
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEecccc
Confidence            9999999999999999988886544 358999999999994

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-30  Score=160.21  Aligned_cols=118  Identities=22%  Similarity=0.315  Sum_probs=100.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+||+|+|++|||||||++++.++.+...+.++.+..........  ....+.+.+||++|++.+..++..+++.+|+++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI--DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE--TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeee--eeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            379999999999999999999999988888888777665555543  346789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+.+..|+..+.+... .++|++|||||+|.
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~  120 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDL  120 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCC-CCCeEEEEecCCch
Confidence            99999999999999999999876544 58999999999994

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.8e-30  Score=160.07  Aligned_cols=118  Identities=20%  Similarity=0.306  Sum_probs=105.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++..+.+...+.++.+........  ..+.....+.+||++|++++..++..+++.+++++
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII--NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEE--EETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEE--EecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            4899999999999999999999999988888988876654444  33457889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||.+++++|.++..|+..+..... .++|+++||||+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~  122 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDL  122 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEecccchhHHHHhhhhcccccccC-CceEEEEEEecccc
Confidence            99999999999999999999877654 58999999999993

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1e-29  Score=158.69  Aligned_cols=119  Identities=25%  Similarity=0.406  Sum_probs=103.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-cchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-SVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~   80 (135)
                      -+||+++|++|||||||++++.++.+...+.++.+..........  ......+.+||.+|.+.+. ..+..+++++|++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   79 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI--DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   79 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE--TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeee--eccceEEEEEeccCchhhccccceeeecCCCce
Confidence            379999999999999999999999999888898887765555433  3467889999999987664 4577899999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|+++..|+.++.++....++|++|||||+|.
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl  121 (165)
T d1z06a1          80 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL  121 (165)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred             EEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccc
Confidence            999999999999999999999988777678999999999994

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.9e-30  Score=161.30  Aligned_cols=115  Identities=20%  Similarity=0.304  Sum_probs=98.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||+++|+.+.+...+.+|++.... .  ....++..+.+.+||++|++.+..++..+++++++++
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~-~--~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-A--NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-E--EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeecee-e--eeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            589999999999999999999999999999999885432 2  2334567889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHH-HHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISELLL-FYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||+++++||+++.. |...+..+.  .++|++|||||+|
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~--~~~piilvgnK~D  120 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLD  120 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHH
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Confidence            9999999999999976 555554443  4799999999999

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-30  Score=162.52  Aligned_cols=119  Identities=17%  Similarity=0.334  Sum_probs=79.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+||+++|+++||||||+++|+++.+...+.++.+.++.......  ++..+.+++||++|++.+..++..+++.+++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL--DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE--TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEE--CCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            379999999999999999999999988888899988776666543  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      +|||++++.||+.+..|...+..... .+.|+++|+||+|..
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~D~~  124 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVN  124 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CC
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhcc-CCceEEEEEecccch
Confidence            99999999999999999998865443 579999999999943

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-29  Score=158.93  Aligned_cols=119  Identities=27%  Similarity=0.410  Sum_probs=106.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+..+......  .+...+.+.+||++|++.++.++..+++++++++
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS--VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE--ETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEE--EeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            47999999999999999999999999888888888766555443  3457889999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++++.+..|+.++.+.......|+++++||+|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~  125 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK  125 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccc
Confidence            99999999999999999999988777778999999999994

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-29  Score=156.23  Aligned_cols=118  Identities=21%  Similarity=0.389  Sum_probs=105.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.++.+...+.++.+.++......  .++..+.+.+||++|++.+...+..+++++++++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~--~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT--INEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE--ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccc--cccccccccccccCCchhHHHHHHHHHhccceEE
Confidence            47999999999999999999999999999999999877665553  4457899999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++++|+++..|+.++..... ...|+++++||+|.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~  120 (170)
T d1ek0a_          81 VVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDM  120 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred             EEEeCCcccchhhhhhhhhhhccccc-cccceeeeeccccc
Confidence            99999999999999999988766544 47899999999983

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-29  Score=157.26  Aligned_cols=117  Identities=21%  Similarity=0.403  Sum_probs=98.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|+++||||||+++++++.+...+.+|.+.++.......  ++..+.+.+||+||++.++.++..++++++++++
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI--NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES--SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEE--CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            79999999999999999999999999999999998877766654  4578899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      |||.+++++|+.+..|...+..... ...|++++++|.|.
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~  119 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM  119 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred             EEECCCccCHHHHHhhhhhhhcccc-Ccceeeeecchhhh
Confidence            9999999999999998888766544 47899999999984

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=1.1e-28  Score=154.00  Aligned_cols=114  Identities=22%  Similarity=0.415  Sum_probs=100.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++|.+..+ ..+.||.+.....+..      ..+.+.+||++|++.++..+..+++.+++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~------~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   74 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEH------RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   74 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEEE------TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeeccc------cccceeeeecCcchhhhhHHHhhhhhhhcce
Confidence            58999999999999999999998755 5678888877665544      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++||+++..++..+..|+.....+....+.|+++|+||+|.
T Consensus        75 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  115 (165)
T d1ksha_          75 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL  115 (165)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             eeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccc
Confidence            99999999999999888777766666678999999999994

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.3e-29  Score=155.07  Aligned_cols=118  Identities=20%  Similarity=0.382  Sum_probs=93.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI   80 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (135)
                      .+||+++|+++||||||+++++++.+.. .+.++.+.++......  .++..+.+++||++|++.++.++..++++++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD--VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEE--ETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEE--ecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            5899999999999999999999988754 4566667776655553  345778999999999999999999999999999


Q ss_pred             EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++|||++++++|..+..|+..+.+... ...|+++|+||+|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~  124 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDS  124 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCST
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeech
Confidence            999999999999999999888766554 47899999999994

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.3e-29  Score=156.08  Aligned_cols=118  Identities=19%  Similarity=0.332  Sum_probs=99.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+|+|+++||||||++++.++.+...+.+|.+.........  .++..+.+.+||++|+..+...+..++..++++++
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE--VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEE--ETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeee--ecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            7999999999999999999999999988999988866554443  34578899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~  122 (135)
                      +||.+++.||+.+..|++++.+..   ...+.|+++||||+|.
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl  127 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI  127 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccch
Confidence            999999999999999998886543   3347899999999994

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.6e-29  Score=156.62  Aligned_cols=119  Identities=21%  Similarity=0.388  Sum_probs=90.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++.+...+.++.+.......... .+.....+.+||++|++.+...+..+++.++++++
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV-DGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECC-SSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeee-cCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            79999999999999999999999998888888877665544443 23356789999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~  122 (135)
                      |||++++.||+.+..|++++....   ...++|+++||||+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl  124 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA  124 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccch
Confidence            999999999999999999887543   2347899999999994

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.2e-28  Score=156.27  Aligned_cols=119  Identities=27%  Similarity=0.430  Sum_probs=105.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      -+||+|+|++|||||||+++++++.+...+.+|.+.++.......  .+..+.+.+||++|++.+...+..++..+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV--DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   79 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES--SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeee--CCceEEEEeeecCCcccccccccccccCccEEE
Confidence            479999999999999999999999999999999998776666544  446789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~  122 (135)
                      ++||.+++.+|+.+..|++++..+..   ..++|+++||||+|.
T Consensus        80 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl  123 (184)
T d1vg8a_          80 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL  123 (184)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred             EeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecc
Confidence            99999999999999999998876432   236899999999994

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.6e-28  Score=155.47  Aligned_cols=114  Identities=23%  Similarity=0.371  Sum_probs=96.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.+..+. ...||.+........      ..+.+.+||++|++.++..+..+++.+++++
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSY------KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEE------TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEee------CCEEEEEEecccccccchhHHhhhccceeEE
Confidence            589999999999999999999887664 355777776655544      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||++++.++.++..|+.++.+.....+.|++||+||+|.
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl  130 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ  130 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred             EEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecc
Confidence            99999999999999999988877766678999999999994

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.95  E-value=3.7e-28  Score=152.90  Aligned_cols=114  Identities=24%  Similarity=0.394  Sum_probs=98.9

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||++++.++.+. ...++.+.+......      ..+.+.+||++|++.++..+..+++.+++++
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   88 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQS------QGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEE------TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEecc------CCeeEeEeeccccccchhHHHHHhhccceeE
Confidence            589999999999999999999998764 334566665544433      4679999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++..++.++..|+.++.......++|+++|+||+|.
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl  129 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL  129 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred             EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccc
Confidence            99999999999999999988877766678999999999994

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.95  E-value=4.7e-28  Score=152.21  Aligned_cols=114  Identities=22%  Similarity=0.391  Sum_probs=98.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+++||||||++++..+.+.. ..+|.+........      ..+.+.+||++|++.++..+..+++.+++++
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~~~~------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEEEEE------TTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEEeec------cceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            5899999999999999999999877643 44666765544443      5689999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++.+++.++..|+....+.....+.|+++++||+|.
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl  125 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL  125 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccc
Confidence            99999999999999999888877655568999999999994

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-28  Score=151.88  Aligned_cols=116  Identities=13%  Similarity=0.153  Sum_probs=93.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCC---CcccccchHHhhccCc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG---DHKFESVWPAFQRDVH   78 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g---~~~~~~~~~~~~~~~~   78 (135)
                      |||+++|++|||||||++++.+..+. ....++.+.+.+.....  .++..+.+.+||+++   ++++  ++..++++++
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM--VDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE--ETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeec--cCCceeeeeeeccccccccccc--cccccccccc
Confidence            89999999999999999999987654 34456666665555543  345778888999764   4544  5677899999


Q ss_pred             EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++++|||++++++|+++..|..++......+++|+++||||+|.
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  123 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  123 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccc
Confidence            99999999999999999999999987766668999999999994

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-27  Score=147.96  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=91.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+++||||||++++.++.+.. +.++.+..+ .  .....++..+.+.+||++|++.+     .|++.+|+++
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~--~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-K--KEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-E--EEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-E--EEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            5899999999999999999999988754 445555533 2  22344568899999999998764     4789999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~  122 (135)
                      +|||+++++||+++..|++.+....  ...++|+++||||.|.
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~  118 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI  118 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTC
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCc
Confidence            9999999999999999999886543  3357899999999884

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=134.10  Aligned_cols=113  Identities=20%  Similarity=0.317  Sum_probs=96.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF   82 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (135)
                      +||+++|++|||||||++++.++++...+...... .....      ...+.+.+||++|.+.+...+..++..++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-VETVE------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-EEEEE------CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-EEEEe------eeeEEEEEecCCCcccchhhhhhhhccceeEEE
Confidence            59999999999999999999998876554333222 22222      267899999999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||++++.++..+..|+.++.........|+++++||+|.
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~  113 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL  113 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccc
Confidence            9999999999999999999888777778999999999984

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=6.7e-25  Score=139.44  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=87.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+.|||||||+++|....+     |+.+.....+..      ....+++||++|++.++..+..|++.+++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~~~~~~~------~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i   70 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHFTF------KDLHFKMFDVGGQRSERKKWIHCFEGVTAII   70 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHS-----CCCSEEEEEEEE------TTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC-----CCccEEEEEEEe------eeeeeeeeccccccccccchhhcccCCceee
Confidence            68999999999999999999998776     455654444443      6789999999999999999999999999999


Q ss_pred             EEEeCCCcchHHH----------HHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGHISE----------LLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s~~~----------~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|||+++.++|..          ...+...+.........|+++++||+|
T Consensus        71 ~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d  120 (195)
T d1svsa1          71 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  120 (195)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccch
Confidence            9999998887632          223333333444446889999999998

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.4e-25  Score=141.02  Aligned_cols=111  Identities=22%  Similarity=0.342  Sum_probs=87.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|++|||||||++++.   +...+.||+|.....+..      ....+++||++|++.++..+..+++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~------~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~   72 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEI------KNVPFKMVDVGGQRSERKRWFECFDSVTSIL   72 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEE------TTEEEEEEEECC-------CTTSCTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEee------eeeeeeeecccceeeecccccccccccceeE
Confidence            3799999999999999999994   345678999987766665      6789999999999999999999999999999


Q ss_pred             EEEeCCCcch----------HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGH----------ISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++||.++..+          +++...|+..+.+.....+.|+++++||+|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~D  122 (200)
T d1zcba2          73 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  122 (200)
T ss_dssp             EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccch
Confidence            9999988654          455566667776666667899999999999

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-24  Score=137.43  Aligned_cols=111  Identities=19%  Similarity=0.249  Sum_probs=94.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|+.|||||||++++..+.+  .+.||+|.++..+..      ..+.+++||++|++.++..+..+++.+++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~~~------~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   73 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDL------QSVIFRMVDVGGQRSERRKWIHCFENVTSIM   73 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEEEC------SSCEEEEEECCCSTTGGGGGGGGCSSCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEEec------cceeeeeccccccccccccccccccccceee
Confidence            68999999999999999999998876  467999998766655      6789999999999999999999999999999


Q ss_pred             EEEeCCCcch-----------HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPGH-----------ISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~s-----------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++||.++..+           ++....|...+... ...+.|+++++||+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~D  123 (200)
T d2bcjq2          74 FLVALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKD  123 (200)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHH
T ss_pred             EeeeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhh
Confidence            9999987642           45556676666443 345899999999999

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.7e-24  Score=139.12  Aligned_cols=110  Identities=22%  Similarity=0.317  Sum_probs=92.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      .+||+++|+.|||||||++++..+.+    .||+|.....+..      ..+.+++||++|++.++..|..+++++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~~~~------~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV------DKVNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEEEEE------TTEEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEEEEE------CcEEEEEEecCccceeccchhhhcccccceE
Confidence            47999999999999999999987654    4889987766655      5689999999999999999999999999999


Q ss_pred             EEEeCCCcc----------hHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         82 FVFNSGVPG----------HISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        82 ~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +++|+++..          .+.+...++..+.+.....++|++|++||+|
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~D  125 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  125 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhh
Confidence            999998643          3444555566666666667899999999999

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.89  E-value=1e-22  Score=127.58  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=91.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|.+|||||||++++.+.++.. ..++.+........      ..+.+.+||.++.+..+..+..++..+++++
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVI------NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEEEE------TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEEee------cceEEEEeccccccccccchhhhhccceeee
Confidence            5899999999999999999999987653 33444443333333      5679999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|.++..+++....+...........+.|+++|+||+|.
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  128 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  128 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccc
Confidence            99999999999998887777766666678999999999994

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.2e-22  Score=129.27  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-cchHHhhccCcEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-SVWPAFQRDVHGIIF   82 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i~   82 (135)
                      +|+++|+++||||||+++|.++.+... .++.+.+...+...   +...+.+.+||++|++.++ ..+..+++.++++++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~   77 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN---NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF   77 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS---STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe---eeeeeeeeeeeccccccccchhhhhhhhhccccce
Confidence            699999999999999999999887654 46777665544432   3456789999999998875 466788899999999


Q ss_pred             EEeCCCcchH-HHHHHHHHHHHhc--cCCCCceEEEEEecCCC
Q psy10117         83 VFNSGVPGHI-SELLLFYDYFVTQ--SDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        83 v~d~~~~~s~-~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~  122 (135)
                      |+|+++..++ .....|+..+...  .....+|++||+||+|.
T Consensus        78 v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl  120 (207)
T d2fh5b1          78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI  120 (207)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred             EEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECccc
Confidence            9999987663 4555555554432  22246899999999995

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.6e-22  Score=121.99  Aligned_cols=112  Identities=23%  Similarity=0.353  Sum_probs=97.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      ||+++|+++||||||++++.++.+. .+.|+.+........      ......+||+++...+...+..++..+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAI------GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECC------TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEecc------CCeeEEEEeeccchhhhhhHhhhhhheeeeeee
Confidence            8999999999999999999998764 466777766554443      456789999999999999999999999999999


Q ss_pred             EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|.++..++.....|...........+.|+++++||.|.
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~  113 (166)
T d2qtvb1          75 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA  113 (166)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTS
T ss_pred             ccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccc
Confidence            999999999999888888877777778999999999994

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.87  E-value=9.3e-21  Score=117.30  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=96.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      ++||+++|++|||||||+++++++.+.. ..++.+........      ..+.+.+|+.++.+.+......++..+++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTY------KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   77 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEE------TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceeeeeecc------CceEEEEeeccccccccccchhhhhhhhhhh
Confidence            5899999999999999999999988764 34666655444433      5678999999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|+.+..++.....+.............|+++++||.|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl  118 (169)
T d1upta_          78 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM  118 (169)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccc
Confidence            99999999999888887777666666668999999999994

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=9.6e-21  Score=118.93  Aligned_cols=110  Identities=21%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch--------HH
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW--------PA   72 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~   72 (135)
                      .|+|+|.+|||||||+++|++.....   ....+..........      ....+.+||+||........        ..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE------GRRQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE------TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee------eeeeeeecccccccccccccchhccccccc
Confidence            69999999999999999999875421   122222222211111      45689999999975543333        33


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++++|++++|+|++++.+... ..|++.+....  .+.|+++|+||+|.
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~--~~~piilv~NK~Dl  127 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLV--GKVPILLVGNKLDA  127 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT--TTSCEEEEEECGGG
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheeccc--cchhhhhhhccccc
Confidence            4678999999999987644322 33444443332  36899999999994

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.84  E-value=2.1e-20  Score=117.30  Aligned_cols=114  Identities=23%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII   81 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (135)
                      +.||+++|++|||||||+++|.++.+.. ..++.+.+......      ......+||+.++..+...+..++...++++
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTI------AGMTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEE------TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEe------cccccccccccchhhhhhHHhhhhcccceee
Confidence            4799999999999999999999987653 33555555544444      4567899999999999999999999999999


Q ss_pred             EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +++|.++...+.+...++..........+.|+++++||+|.
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~  126 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR  126 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCc
Confidence            99999999999888777766666666678999999999994

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4e-20  Score=114.12  Aligned_cols=113  Identities=14%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF   73 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~   73 (135)
                      +||+++|+++||||||+++|++..... ...++..........  ..  ....+.+||++|......        ....+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   77 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI--HI--DGMPLHIIDTAGLREASDEVERIGIERAWQE   77 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEE--EE--TTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeee--ec--cCceeeeccccccccccccchhHHHHHHHHH
Confidence            799999999999999999999876431 222222221111111  11  456788999999543322        12345


Q ss_pred             hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +..++++++++|..+..+++....|.+.+.....  +.|+++|+||+|
T Consensus        78 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~D  123 (161)
T d2gj8a1          78 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKAD  123 (161)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHH
T ss_pred             HHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhh
Confidence            6799999999999999888888777666654443  789999999999

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3e-20  Score=119.02  Aligned_cols=113  Identities=22%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc----cC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR----DV   77 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----~~   77 (135)
                      +..|+++|+++||||||+|+|++..+.+.    .+........    ......+.+||+||++.++..+..++.    .+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~   74 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAA----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   74 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEET----TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEEE----EeCCeEEEEEecccccchhhHHHHHHHHHhhhc
Confidence            56899999999999999999999876532    2221112222    224557889999999988776666553    55


Q ss_pred             cEEEEEEeCC-CcchHHHHHHHHHHHH---hccCCCCceEEEEEecCCC
Q psy10117         78 HGIIFVFNSG-VPGHISELLLFYDYFV---TQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        78 ~~~i~v~d~~-~~~s~~~~~~~~~~i~---~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+++++|.. +..+++.+..|+.++.   +.....+.|+++|+||+|.
T Consensus        75 ~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~  123 (209)
T d1nrjb_          75 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  123 (209)
T ss_dssp             EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecc
Confidence            8888899966 4566777777775443   2333458999999999995

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=3.9e-18  Score=106.96  Aligned_cols=112  Identities=14%  Similarity=0.063  Sum_probs=69.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc----c---cchHHhh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF----E---SVWPAFQ   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~---~~~~~~~   74 (135)
                      +|+++|.++||||||+|+|++......  ...+....+....     ......+.+||+||....    +   ......+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~   77 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-----VSEEERFTLADIPGIIEGASEGKGLGLEFLRHI   77 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE-----CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceee-----ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHH
Confidence            589999999999999999987654321  1222222221111     124557899999994321    1   1223446


Q ss_pred             ccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++.+++++|.....  .......|+......  ..+.|+++|+||+|.
T Consensus        78 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~D~  125 (180)
T d1udxa2          78 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPA--LLRRPSLVALNKVDL  125 (180)
T ss_dssp             TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHH--HHHSCEEEEEECCTT
T ss_pred             Hhhhhhhhhcccccccccchhhhhhhhhccccc--cchhhhhhhhhhhhh
Confidence            7899999999986542  233334444333211  125799999999995

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=7.6e-18  Score=103.59  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=69.7

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC-C--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc------c---cch
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE-E--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF------E---SVW   70 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------~---~~~   70 (135)
                      +||+++|.++||||||+++|++..... .  ...+.......+..      ....+.+||+||....      .   ...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   74 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI------RGILFRIVDTAGVRSETNDLVERLGIERT   74 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE------TTEEEEEEESSCCCSSCCTTCCCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe------CCeeEEeccccccccCCccHHHHHHHHHH
Confidence            699999999999999999999765321 1  11222211112222      4568899999993211      0   111


Q ss_pred             HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+.++|++++|+|.+++........+. .+      ...+++++.||+|.
T Consensus        75 ~~~~~~ad~ii~v~d~~~~~~~~~~~~~~-~~------~~~~~i~~~~k~d~  119 (160)
T d1xzpa2          75 LQEIEKADIVLFVLDASSPLDEEDRKILE-RI------KNKRYLVVINKVDV  119 (160)
T ss_dssp             HHHHHHCSEEEEEEETTSCCCHHHHHHHH-HH------TTSSEEEEEEECSS
T ss_pred             HHHHHhCCEEEEEEeCCCCcchhhhhhhh-hc------ccccceeeeeeccc
Confidence            22357899999999999887654433322 21      25789999999993

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=3.5e-17  Score=101.78  Aligned_cols=108  Identities=22%  Similarity=0.222  Sum_probs=67.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc---------cccchH
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK---------FESVWP   71 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~   71 (135)
                      .|+++|++|||||||+++|++....   .....+.......+..      ....+.+||++|...         +.....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   75 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW------YGKTFKLVDTCGVFDNPQDIISQKMKEVTL   75 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE------TTEEEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccc------cccccccccccceeeeeccccccccccccc
Confidence            6899999999999999999986542   1122222222222222      556789999998321         112223


Q ss_pred             HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .++..+|+++++.|.++.... ....++..+...    +.|+++|+||+|.
T Consensus        76 ~~~~~ad~i~~~~~~~~~~~~-~~~~~~~~l~~~----~~pviiv~NK~Dl  121 (171)
T d1mkya1          76 NMIREADLVLFVVDGKRGITK-EDESLADFLRKS----TVDTILVANKAEN  121 (171)
T ss_dssp             HHHTTCSEEEEEEETTTCCCH-HHHHHHHHHHHH----TCCEEEEEESCCS
T ss_pred             cccccCcEEEEeecccccccc-cccccccccccc----cccccccchhhhh
Confidence            346789999999998765543 234455554432    5799999999994

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=6.2e-18  Score=109.85  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             CeEE---EEEECCCCCChHHHHHHHhcCCCCCCcc--CCcceeEEEEEeee------------ecCCceEEEEEEecCCC
Q psy10117          1 MKIK---ILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSY------------ALDTSKTEIELWDTSGD   63 (135)
Q Consensus         1 ~~~k---i~viG~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~------------~~~~~~~~~~i~d~~g~   63 (135)
                      |++|   |+|+|.+++|||||+++|++........  .+............            ........+.+.||||+
T Consensus         1 ~~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh   80 (227)
T d1g7sa4           1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH   80 (227)
T ss_dssp             CEECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             CCCCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccce
Confidence            4554   9999999999999999998753221110  11111111111110            11224457899999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.|.......+..+|++++|+|+.+.-.-. ....+..+..    .+.|+++|.||+|.
T Consensus        81 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iivlNK~D~  134 (227)
T d1g7sa4          81 EAFTTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDR  134 (227)
T ss_dssp             SCCTTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred             ecccccchhcccccceEEEEEecccCcccc-hhHHHHHhhc----CCCeEEEEEECccC
Confidence            999888888889999999999997653322 2233333322    26899999999993

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=4.1e-18  Score=106.96  Aligned_cols=107  Identities=16%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc-----------c----c
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF-----------E----S   68 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~----~   68 (135)
                      .|+++|++|||||||+|+|++........|........+..      .  .+.+||+||....           .    .
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~------~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccc------c--cceecccCCceeccccccccccccchhhhh
Confidence            58999999999999999999876543322222222222221      1  3578999994211           1    1


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHH----------HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISEL----------LLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~----------~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....++.+|++++|+|..........          .+.++.+..    .+.|+++|+||+|.
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~  133 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDK  133 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeeh
Confidence            122345689999999998754321111          112222221    26899999999994

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.73  E-value=9.5e-18  Score=105.26  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCc-----cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhcc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEY-----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRD   76 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   76 (135)
                      .++|+++|.+++|||||+++|++.......     ....+........  ........+.++|++|+..|.......+..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS--AFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCC--EEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccc--ccccCCccccccccccccccccchhhhhhh
Confidence            478999999999999999999964322110     0111111100000  111255788999999999998888889999


Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         77 VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        77 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +|++++++|.++.........| ..+..    .++|+++|.||+|.
T Consensus        83 ~d~~ilv~d~~~g~~~~~~~~~-~~~~~----~~~p~iiv~NKiD~  123 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTGEHM-LILDH----FNIPIIVVITKSDN  123 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCBCEEEECTTS
T ss_pred             ccccccccccccccchhhhhhh-hhhhh----cCCcceeccccccc
Confidence            9999999999886543222222 22221    26899999999995

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=1.6e-16  Score=99.83  Aligned_cols=109  Identities=16%  Similarity=0.043  Sum_probs=67.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC--CCc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCc------------ccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA--EEY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH------------KFE   67 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~------------~~~   67 (135)
                      +||+++|.++||||||+++|++....  ... ..+.......+..      ....+.++|++|..            .+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI------DGRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE------TTEEEEESSCSCC-----------CCSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeecc------CCceeeeeccCCccccccccccccccchh
Confidence            79999999999999999999986532  111 1111211112221      33456777777743            223


Q ss_pred             cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....+++.+|++++|+|...+.. .....++..+..    .+.|+++|+||+|.
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~----~~~~~i~v~nK~D~  132 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER----RGRASVVVFNKWDL  132 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGG
T ss_pred             HHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH----cCCceeeeccchhh
Confidence            344445678999999999976543 233444444433    25799999999994

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=4.1e-16  Score=99.61  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=76.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC--------CCCC----C-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL--------TTAE----E-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~--------~~~~----~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      +||+++|..++|||||+++|+..        ....    +       ..-|+......+..      ...++++.|+||+
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~------~~~~i~iiDtPGh   77 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET------AKRHYSHVDCPGH   77 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC------SSCEEEEEECCCS
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe------CCeEEEEEeCCCc
Confidence            79999999999999999999732        0000    0       02233332222222      5678999999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      ..|.......++.+|++++|+|+.+.-.....+.|. .+..    .++| ++++.||+|.
T Consensus        78 ~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~----~gi~~iiv~iNK~D~  132 (204)
T d2c78a3          78 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ----VGVPYIVVFMNKVDM  132 (204)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH----TTCCCEEEEEECGGG
T ss_pred             hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH----cCCCeEEEEEEeccc
Confidence            999888888899999999999998876554444443 2222    1455 7788999994

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=1.1e-16  Score=100.59  Aligned_cols=114  Identities=11%  Similarity=0.001  Sum_probs=68.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCC-C-ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHH---hh
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAE-E-YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPA---FQ   74 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~---~~   74 (135)
                      +|+++|+++||||||+|+|++..... . ...|..........     .....+.+||+||..    ........   .+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~-----~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~   77 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-----DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI   77 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-----SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEe-----cCCcEEEEecCCCcccCchHHHHHHHHHHHHH
Confidence            68999999999999999998765321 1 12222222222222     133468899999942    11222222   34


Q ss_pred             ccCcEEEEEEeCCCcchHHHHHHHH---HH-HHhccCCCCceEEEEEecCCC
Q psy10117         75 RDVHGIIFVFNSGVPGHISELLLFY---DY-FVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        75 ~~~~~~i~v~d~~~~~s~~~~~~~~---~~-i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..++.++++++............+.   .. ........+.|+++|+||+|.
T Consensus        78 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl  129 (185)
T d1lnza2          78 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  129 (185)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             HHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch
Confidence            5788999999877655433322211   11 112233447899999999995

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=8.1e-16  Score=101.93  Aligned_cols=111  Identities=21%  Similarity=0.160  Sum_probs=80.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC--CC------------------CccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT--AE------------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~--~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      +|+++|+.++|||||+.+++...-  ..                  ...-|+......+.+      ...++++.||||+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~------~~~~~n~iDtPG~   81 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW------KDHRINIIDAPGH   81 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE------TTEEEEEECCCSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc------CCeEEEEecCCch
Confidence            699999999999999999973211  00                  011222222223333      6679999999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGD  125 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~  125 (135)
                      ..|.......++.+|++|+|+|..+.-.....+.|- .+.    ..++|.+++.||+|....
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~----~~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAE----KYKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHH----TTTCCEEEEEECTTSTTC
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHH-HHH----HcCCCEEEEEeccccccc
Confidence            999999999999999999999998876655555552 222    237999999999995443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.65  E-value=1e-15  Score=101.17  Aligned_cols=109  Identities=14%  Similarity=0.064  Sum_probs=79.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-C-------------------CccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-E-------------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD   63 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-~-------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   63 (135)
                      +|+++|+.++|||||+.+++...-. .                   ....|+......+..      ...+++++||||+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~------~~~~~n~iDtPGh   77 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF------RGHRVFLLDAPGY   77 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE------TTEEEEEEECCCS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc------cccceeEEccCch
Confidence            6999999999999999998632111 0                   012233333333333      5678999999999


Q ss_pred             cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      ..|.......++-+|++++|+|..+.-.......|- .+.+    .++|.+++.||+|..
T Consensus        78 ~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          78 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh----ccccccccccccccc
Confidence            999999999999999999999998776554445453 2222    268999999999953

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4.1e-16  Score=108.63  Aligned_cols=113  Identities=13%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHh-----hcc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAF-----QRD   76 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-----~~~   76 (135)
                      .++|+|+|.+|||||||+|.|.+......-....|....+.............+.+|||||-.........+     +..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~  135 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  135 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhhc
Confidence            479999999999999999999985432211111111111111111111123357799999965433222322     457


Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         77 VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        77 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      +|.++++.|..-.   ++-...+..+...    +.|+++|.||+|
T Consensus       136 ~d~~l~~~~~~~~---~~d~~l~~~l~~~----~k~~~~V~nK~D  173 (400)
T d1tq4a_         136 YDFFIIISATRFK---KNDIDIAKAISMM----KKEFYFVRTKVD  173 (400)
T ss_dssp             CSEEEEEESSCCC---HHHHHHHHHHHHT----TCEEEEEECCHH
T ss_pred             ceEEEEecCCCCC---HHHHHHHHHHHHc----CCCEEEEEeCcc
Confidence            7888887764321   1222334444332    579999999999

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.63  E-value=2.3e-15  Score=95.52  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=77.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC------CC--------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT------TA--------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES   68 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~------~~--------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   68 (135)
                      ++|+++|..++|||||+++|++..      ..        ...+...|.+.......  .......+++.|+||+..|..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~--~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE--YSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEE--EECSSCEEEEEECSSHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEE--EEeceeeEEeecCcchHHHHH
Confidence            799999999999999999997420      00        01122334433222222  223567899999999999988


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....-++.+|++++|+|..+.-. .+-++.+..+...   .-.|++++.||+|.
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~  131 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADA  131 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGG
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccc
Confidence            78888899999999999987543 3333333333222   23589999999994

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=2.1e-15  Score=95.42  Aligned_cols=107  Identities=11%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCCCCccCCcc--eeEEEEEeeeecCCceEEEEEEecCCCccc----------cc---
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIELWDTSGDHKF----------ES---   68 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~---   68 (135)
                      +|+|+|.+|||||||+|+|++...........+  ........       ...+.+.|+++....          ..   
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-------NDELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-------TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-------cccceEEEEEeeccccccccccchhhhHHh
Confidence            799999999999999999998653222111111  11111111       123345555552211          11   


Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....+..++++++++|.+++.. ..-..+++.+..    .+.|+++|+||+|.
T Consensus        98 ~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~----~~~piivv~NK~D~  146 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY----YGIPVIVIATKADK  146 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred             hhhccccchhhhhhhhhcccccc-cccccccccccc----ccCcceechhhccc
Confidence            11123346789999999876533 222344444432    25799999999994

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.58  E-value=3.6e-14  Score=89.79  Aligned_cols=118  Identities=16%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC-----ccCCcceeEEEEEeee-----------------ecCCceEEEEEEe
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE-----YHPTQGVRIVECEHSY-----------------ALDTSKTEIELWD   59 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-----~~~t~~~~~~~~~~~~-----------------~~~~~~~~~~i~d   59 (135)
                      .++|+++|..++|||||+++|++......     ...+....+.......                 ........+++.|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            47899999999999999999987432211     1111111111111110                 1111245689999


Q ss_pred             cCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +||++.|......-+..+|+++++.|..+........+.+..+... +  ..+++++.||+|.
T Consensus        85 tPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~--~~~iiv~inK~D~  144 (195)
T d1kk1a3          85 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-G--QKNIIIAQNKIEL  144 (195)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T--CCCEEEEEECGGG
T ss_pred             cchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-c--Cccceeeeecccc
Confidence            9999999888888888999999999998764333333333333222 1  3468889999984

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=2.9e-14  Score=93.90  Aligned_cols=116  Identities=12%  Similarity=0.039  Sum_probs=68.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hH
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WP   71 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~   71 (135)
                      .++|+++|.+|||||||+|.+++......   ...|..........      ....+.++||||-......       ..
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~------~g~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR------AGFTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE------TTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEe------ccEEEEEEeeecccCCcchHHHHHHHHH
Confidence            57999999999999999999998754321   12222222222222      4568999999995322111       11


Q ss_pred             Hhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCC-CCceEEEEEecCCCC
Q psy10117         72 AFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDL-NNHKCLLIDNVKPGR  123 (135)
Q Consensus        72 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~  123 (135)
                      .+.  ...++++||++++...--..-...+..+....+. --.++++|.||+|..
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~  160 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS  160 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccC
Confidence            112  3568899999887643212223333333222111 124789999999953

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=7.4e-14  Score=94.97  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC--CCC--------------CC--ccCCcceeEEEEEeee----------ecCCceEEE
Q psy10117          4 KILILGPIMAGKTVLANALCDL--TTA--------------EE--YHPTQGVRIVECEHSY----------ALDTSKTEI   55 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~--~~~--------------~~--~~~t~~~~~~~~~~~~----------~~~~~~~~~   55 (135)
                      +|+|+|+.++|||||+.+|+..  ...              .+  -.-|+......+..+.          ..++....+
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i   98 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI   98 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence            5999999999999999999721  110              00  0111111111121111          123467889


Q ss_pred             EEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        56 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ++.||||+..|.......++-+|++++|+|+.+.-.......|-... .    .+.|++++.||+|
T Consensus        99 nliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~----~~~p~i~viNKiD  159 (341)
T d1n0ua2          99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVD  159 (341)
T ss_dssp             EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHH
T ss_pred             EEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H----cCCCeEEEEECcc
Confidence            99999999999999999999999999999998876554444443332 2    2689999999999

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=1.7e-13  Score=87.33  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCCC---cc--C--CcceeEEEEEeee--------------------ecCCceEEE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAEE---YH--P--TQGVRIVECEHSY--------------------ALDTSKTEI   55 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~~---~~--~--t~~~~~~~~~~~~--------------------~~~~~~~~~   55 (135)
                      ++|+++|..++|||||+++|++......   ..  .  ..+..........                    ........+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            6999999999999999999987432210   00  0  0111111110000                    001123478


Q ss_pred             EEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        56 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ++.|+||++.|.......+..+|++++|+|..+.-.-...++.+..+... +  -.|++|+.||+|.
T Consensus        89 ~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~--i~~iIV~vNK~Dl  152 (205)
T d2qn6a3          89 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G--VKNLIIVQNKVDV  152 (205)
T ss_dssp             EEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T--CCCEEEEEECGGG
T ss_pred             EEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-C--CceeeeccccCCC
Confidence            99999999999877777788999999999998753222223333333221 1  3589999999994

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.50  E-value=6.2e-13  Score=85.61  Aligned_cols=111  Identities=13%  Similarity=0.064  Sum_probs=71.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC--CC-----------------------------ccC--CcceeEEEEEeeeecC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA--EE-----------------------------YHP--TQGVRIVECEHSYALD   49 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~--~~-----------------------------~~~--t~~~~~~~~~~~~~~~   49 (135)
                      +||+++|..++|||||+.+|+...-.  ..                             ...  ..+.+.....    ..
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~----~~   85 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY----FS   85 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE----EE
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE----Ee
Confidence            68999999999999999999632110  00                             000  0111111111    11


Q ss_pred             CceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCc-eEEEEEecCCC
Q psy10117         50 TSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNH-KCLLIDNVKPG  122 (135)
Q Consensus        50 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~  122 (135)
                      .....+++.|+||++.|-.....-...+|++++|+|+.+.-.-. ..+.+..+. ..   ++ .++++.||+|.
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~-~~---gv~~iiv~vNK~D~  154 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIAS-LL---GIKHIVVAINKMDL  154 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHH-HT---TCCEEEEEEECTTT
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHH-Hc---CCCEEEEEEEcccc
Confidence            24568999999999999888888889999999999998754322 222222221 11   34 58999999995

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=5.5e-14  Score=91.55  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC--C-C------------------C------------CCccCCcceeEEEEEeeeec
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL--T-T------------------A------------EEYHPTQGVRIVECEHSYAL   48 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~--~-~------------------~------------~~~~~t~~~~~~~~~~~~~~   48 (135)
                      .++|+++|..++|||||+.+|+..  . .                  .            .+..-|+......+..    
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~----   81 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET----   81 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC----
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc----
Confidence            379999999999999999998621  0 0                  0            0022333333333333    


Q ss_pred             CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCc-eEEEEEecCC
Q psy10117         49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH---I---SELLLFYDYFVTQSDLNNH-KCLLIDNVKP  121 (135)
Q Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D  121 (135)
                        ...++++.|+||+..|......-...+|++++|+|.....-   +   -+..+.+..+. .   .++ +++++.||+|
T Consensus        82 --~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~---~gv~~iiv~iNKmD  155 (239)
T d1f60a3          82 --PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T---LGVRQLIVAVNKMD  155 (239)
T ss_dssp             --SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H---TTCCEEEEEEECGG
T ss_pred             --CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-H---cCCCeEEEEEECCC
Confidence              56799999999999999888888999999999999976421   0   12222222221 1   144 5889999999


Q ss_pred             CC
Q psy10117        122 GR  123 (135)
Q Consensus       122 ~~  123 (135)
                      ..
T Consensus       156 ~~  157 (239)
T d1f60a3         156 SV  157 (239)
T ss_dssp             GG
T ss_pred             CC
Confidence            43

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.42  E-value=5.2e-14  Score=90.91  Aligned_cols=115  Identities=16%  Similarity=0.115  Sum_probs=72.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC--CCC---------------------------CccCCcceeEEEEEeeeecCCceE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT--TAE---------------------------EYHPTQGVRIVECEHSYALDTSKT   53 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~~   53 (135)
                      ++|+++|.-++|||||+.+|+...  ...                           ..+...|.+......  ..+....
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~--~~~~~~~   81 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--RFETKKY   81 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--EEECSSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEE--EEecCCc
Confidence            799999999999999999886311  000                           001111221111111  1122567


Q ss_pred             EEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcch------HHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         54 EIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH------ISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        54 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+++.|+||++.|......-.+-+|++++|+|+.+.-.      .....+.+.....   ..-.+++++.||+|.
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~~~iIv~iNK~D~  153 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDL  153 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGG
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCCCceEEEEEcccC
Confidence            89999999999999989999999999999999987521      1122222222211   124578999999994

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=7.1e-12  Score=81.73  Aligned_cols=116  Identities=15%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCC--CC---------------------------CccCCcceeEEEEEeeeecCCceE
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTT--AE---------------------------EYHPTQGVRIVECEHSYALDTSKT   53 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~~   53 (135)
                      ++|+++|.-++|||||+.+|+...-  ..                           ......+........  .......
T Consensus        25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~--~~~~~~~  102 (245)
T d1r5ba3          25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA--YFETEHR  102 (245)
T ss_dssp             EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC--EEECSSE
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccc--ccccccc
Confidence            5899999999999999999953110  00                           000111111100000  1112446


Q ss_pred             EEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117         54 EIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR  123 (135)
Q Consensus        54 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~  123 (135)
                      .+++.|+||+..|......-...+|++++|+|+.+..   ++   .+..+.+..+... +  -.+++++.||+|..
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~--i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-G--INHLVVVINKMDEP  175 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-T--CSSEEEEEECTTST
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-C--CCeEEEEEEcCCCC
Confidence            7999999999999888888889999999999997642   11   1223333222211 1  23588999999954

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3e-11  Score=74.73  Aligned_cols=108  Identities=22%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC-CCcc-CCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chHH
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA-EEYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWPA   72 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~   72 (135)
                      .|+++|.+|||||||+|+|++.... .... .+...........     ....+..||++|......         ....
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-----GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-----TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec-----CCceeEeecCCCceecchhhhhhhhhhcccc
Confidence            5899999999999999999986432 1111 1111111111111     334556788877432211         1111


Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ....++.++++.|..+..  .....+...+..    ...|.++|.||+|.
T Consensus        82 ~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~  125 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDN  125 (179)
T ss_dssp             CCCCEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTT
T ss_pred             chhhcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeec
Confidence            223567777888866533  223333333322    25688999999984

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=6.4e-11  Score=73.41  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++|+++|.++||||||+|+|++....
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            479999999999999999999987643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=2e-10  Score=77.26  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=47.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCCC------CccCCcceeEEEEEeee-------e-------cCCceEEEEEEecCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTAE------EYHPTQGVRIVECEHSY-------A-------LDTSKTEIELWDTSG   62 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~~------~~~~t~~~~~~~~~~~~-------~-------~~~~~~~~~i~d~~g   62 (135)
                      +||.++|.|+||||||+|++++.....      +..|..|+.........       .       .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999865431      12334454322221111       0       011336799999999


Q ss_pred             Cccc----ccchHHh---hccCcEEEEEEeCCC
Q psy10117         63 DHKF----ESVWPAF---QRDVHGIIFVFNSGV   88 (135)
Q Consensus        63 ~~~~----~~~~~~~---~~~~~~~i~v~d~~~   88 (135)
                      .-..    ......+   ++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4221    1222222   468999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=2.3e-09  Score=71.31  Aligned_cols=116  Identities=13%  Similarity=0.051  Sum_probs=69.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCC-CCCccCCcce-eEEEEEeee-------e--------------------------
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTT-AEEYHPTQGV-RIVECEHSY-------A--------------------------   47 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~-~~~~~~t~~~-~~~~~~~~~-------~--------------------------   47 (135)
                      .+|+|+|+.++|||||+|+|++... +....++... ..-.+....       .                          
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            4799999999999999999999775 3333232211 111110000       0                          


Q ss_pred             -------------cCCceEEEEEEecCCCccc-------------ccchHHhhccCcE-EEEEEeCCCcchHHHHHHHHH
Q psy10117         48 -------------LDTSKTEIELWDTSGDHKF-------------ESVWPAFQRDVHG-IIFVFNSGVPGHISELLLFYD  100 (135)
Q Consensus        48 -------------~~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~  100 (135)
                                   ..+....+.++|+||-...             ..+...|..+.+. +++|.+....-+-..+..+.+
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~  186 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK  186 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHH
Confidence                         0001224789999994311             1334456666664 556666665555556667766


Q ss_pred             HHHhccCCCCceEEEEEecCCC
Q psy10117        101 YFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus       101 ~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+..    ...++++|.||+|.
T Consensus       187 ~~~~----~~~r~i~Vltk~D~  204 (299)
T d2akab1         187 EVDP----QGQRTIGVITKLDL  204 (299)
T ss_dssp             HHCT----TCSSEEEEEECGGG
T ss_pred             HhCc----CCCceeeEEecccc
Confidence            6532    24689999999993

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.03  E-value=1.3e-09  Score=72.76  Aligned_cols=66  Identities=14%  Similarity=0.090  Sum_probs=42.1

Q ss_pred             EEEEEEecCCCcc-------------cccchHHhhccCcEEEEEEe-CCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117         53 TEIELWDTSGDHK-------------FESVWPAFQRDVHGIIFVFN-SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN  118 (135)
Q Consensus        53 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  118 (135)
                      ..+.++|+||-..             ...+...|+.+++++++++. ....-.-.....+.+++..    ...++++|.|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~----~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc----CCCeEEEEEe
Confidence            3578999999432             12455667888998766664 4333333444566666522    2468999999


Q ss_pred             cCCC
Q psy10117        119 VKPG  122 (135)
Q Consensus       119 K~D~  122 (135)
                      |+|.
T Consensus       207 k~D~  210 (306)
T d1jwyb_         207 KLDL  210 (306)
T ss_dssp             CTTS
T ss_pred             cccc
Confidence            9994

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=3.1e-10  Score=75.09  Aligned_cols=83  Identities=27%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeee---------ecCCc--eEEEEEEecCCC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSY---------ALDTS--KTEIELWDTSGD   63 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~---------~~~~~--~~~~~i~d~~g~   63 (135)
                      |.+||-++|-|+||||||+++++.....      .+..|..|+    ...+-         ..+..  ...+.+.|.||.
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv----v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GL   76 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGL   76 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE----EecccHhHHHHHHhcCCCceeeeeEEEEEcccc
Confidence            7899999999999999999999976543      223444553    22211         11111  235889999994


Q ss_pred             cc----cccc---hHHhhccCcEEEEEEeCC
Q psy10117         64 HK----FESV---WPAFQRDVHGIIFVFNSG   87 (135)
Q Consensus        64 ~~----~~~~---~~~~~~~~~~~i~v~d~~   87 (135)
                      -.    -+.+   .-..+++||+++.|+|+.
T Consensus        77 i~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          77 VAGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             CTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence            32    1222   233467999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.85  E-value=2.2e-08  Score=66.58  Aligned_cols=87  Identities=16%  Similarity=0.130  Sum_probs=53.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCC--CCCcc-CCcceeEEEEEeee-----------ecCCceEEEEEEecCCCc---
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTT--AEEYH-PTQGVRIVECEHSY-----------ALDTSKTEIELWDTSGDH---   64 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~--~~~~~-~t~~~~~~~~~~~~-----------~~~~~~~~~~i~d~~g~~---   64 (135)
                      .+||.++|.|+||||||++.+++...  ...|. .|+..+......+-           ........+.+.|.||.-   
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            57999999999999999999997543  22222 22222222222211           000123578899999733   


Q ss_pred             -ccccc---hHHhhccCcEEEEEEeCCC
Q psy10117         65 -KFESV---WPAFQRDVHGIIFVFNSGV   88 (135)
Q Consensus        65 -~~~~~---~~~~~~~~~~~i~v~d~~~   88 (135)
                       .-..+   .-..+++||+++.|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence             22222   2334579999999999865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.74  E-value=1e-09  Score=70.65  Aligned_cols=68  Identities=9%  Similarity=-0.019  Sum_probs=38.8

Q ss_pred             eEEEEEEecCCCcccccchHH---hh--ccCcEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         52 KTEIELWDTSGDHKFESVWPA---FQ--RDVHGIIFVFNSGVPG---HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        52 ~~~~~i~d~~g~~~~~~~~~~---~~--~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ...+.+.|+||+..+......   +.  ...+.++++.|.....   .+.........+..+   -..|.++|.||+|.
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~  169 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDL  169 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGG
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccc
Confidence            345889999998755332222   22  2456889999975432   222221111111111   16799999999994

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.59  E-value=2.1e-08  Score=65.93  Aligned_cols=57  Identities=30%  Similarity=0.330  Sum_probs=34.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      .++|+|+|-|+||||||+|++.+.... ...+..|.+.......     ..-.+.+.||||--
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~-~~~~~pG~Tr~~~~i~-----~~~~~~l~DTPGi~  168 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVK-----VGKELELLDTPGIL  168 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE-----ETTTEEEEECCCCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccceE-EECCcccccccceEEE-----CCCCeEEecCCCcc
Confidence            478999999999999999999986543 2223333322111111     11248999999943

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.43  E-value=5.4e-08  Score=59.51  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=21.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      +||+++||+|+|||||++.+++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            589999999999999999999743

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=1.4e-07  Score=60.13  Aligned_cols=24  Identities=25%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      ..+++|++|||||||+|+|.+...
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhh
Confidence            368999999999999999987643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=1.3e-07  Score=60.49  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=19.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      ..+++|++|||||||+|+|.+...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC---
T ss_pred             eEEEECCCCccHHHHHHhhccHhH
Confidence            357999999999999999998643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.21  E-value=3.2e-07  Score=55.98  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      =+|+|.|++|||||||++.|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.17  E-value=4.1e-07  Score=54.98  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .||+++|++||||||+.+.|...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.12  E-value=7.8e-07  Score=54.42  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.08  E-value=1e-06  Score=53.24  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++|++.|++||||||+.+.|...
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            68999999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.07  E-value=1.1e-06  Score=53.91  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +||+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.06  E-value=1.2e-06  Score=53.70  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +||+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.04  E-value=1.8e-06  Score=51.89  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=21.8

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      |+--|++.|++||||||+.+.|...
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5656899999999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.02  E-value=1.5e-06  Score=53.59  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +||+++|+|||||||+...|..
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999885

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.4e-06  Score=53.26  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +||+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.01  E-value=2.3e-06  Score=50.65  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      |+-=|++.|++||||||+++.+...
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4445889999999999999998753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.9e-06  Score=51.83  Aligned_cols=22  Identities=23%  Similarity=0.081  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .=+.|+|++|||||||++++..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3488999999999999999985

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.01  E-value=1.8e-06  Score=53.54  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +||+|+|+|||||||+...|+..
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHH
Confidence            69999999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=1.9e-06  Score=52.79  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+||+|+|++||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.97  E-value=1.4e-06  Score=53.80  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|+|+|++||||||+...|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999988754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.95  E-value=3.2e-06  Score=52.91  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++|++|+|||||++.+++...+
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCChHHHHHHHHhccccc
Confidence            679999999999999999986553

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=4e-06  Score=53.52  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++||+|||||||++.+.+...+
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~~p   52 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLETI   52 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCChHHHHHHHHhcCCCC
Confidence            689999999999999999986654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.5e-05  Score=52.15  Aligned_cols=57  Identities=23%  Similarity=0.228  Sum_probs=39.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCC-----ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEE-----YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH   64 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   64 (135)
                      |.++|+.++|||+|+|.+.+....-.     ...|.|+-+....   ...+....+-+.|+.|..
T Consensus        35 vsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~---~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          35 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVP---HPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEE---CSSSTTCEEEEEEECCBC
T ss_pred             EEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEee---ccCCCCceEEEEeccccc
Confidence            67999999999999999998764322     3455665332222   233456678899999853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=2.5e-06  Score=51.53  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.4

Q ss_pred             EE-EEECCCCCChHHHHHHHhc
Q psy10117          4 KI-LILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki-~viG~~~~GKssli~~l~~   24 (135)
                      || .|+|.+|||||||+++++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 4999999999999998875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=2.7e-06  Score=50.63  Aligned_cols=22  Identities=32%  Similarity=0.690  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.90  E-value=2.9e-06  Score=51.22  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=20.3

Q ss_pred             CeEEEEEE-CCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILIL-GPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~vi-G~~~~GKssli~~l~~~   25 (135)
                      |.-||+++ |++||||||+.+.|...
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44556655 99999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=4.6e-06  Score=53.58  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +++|+|++|||||||++.+.+...+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            6899999999999999999986553

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.89  E-value=4.5e-06  Score=53.22  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      +.++|++|||||||++.+.+-..
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCcchhhHhccCCCC
Confidence            68999999999999998888654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.88  E-value=4.9e-06  Score=53.32  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      ++++||+|||||||++.+.+-..+
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCChHHHHHHHHHcCCCC
Confidence            578999999999999999987653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.88  E-value=5.7e-06  Score=53.20  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|||||||++.+.+-..+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC
Confidence            6889999999999999999986543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.86  E-value=5.8e-06  Score=52.97  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=21.4

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|||||||++.+.+-..+
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCChHHHHHHHHHcCCCC
Confidence            689999999999999999987654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.4e-06  Score=51.15  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCChHHHHHHHhc
Q psy10117          2 KIKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~   24 (135)
                      .+.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.6e-06  Score=53.16  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++++|++|||||||++.+.+-..+
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCC
Confidence            5899999999999999999986543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=4.9e-06  Score=51.27  Aligned_cols=21  Identities=38%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.83  E-value=6.2e-06  Score=53.37  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++|+|++|||||||++.+.+-..+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             EEEEECCCCChHHHHHHHHhcccCC
Confidence            5899999999999999999986543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.3e-06  Score=50.24  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|+|.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999988853

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.82  E-value=4.6e-06  Score=51.48  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .-|+|+|+|||||||+..+|+..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.5e-06  Score=51.61  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      |+|+||+|||||||++.|+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6789999999999999998643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=4.6e-06  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      .||+++|.+||||||+.+.+...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999988753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.80  E-value=8.3e-06  Score=52.29  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -+.++|++|||||||++.+.+...
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            367999999999999999998765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.80  E-value=5.1e-06  Score=52.90  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.5

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|||||||++.+.+-..+
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCcCC
Confidence            689999999999999999997653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=7.8e-06  Score=53.65  Aligned_cols=25  Identities=28%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .++|+|++|+|||||++.+.+...+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCcC
Confidence            5789999999999999999986543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=6.6e-06  Score=50.37  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.9

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+++||+||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=7.9e-06  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~   27 (135)
                      +.++|++|||||||++.+.+-..
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHcCCcc
Confidence            67999999999999999998654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.78  E-value=9.2e-06  Score=52.13  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++||+|+|||||++.+.+-..+
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCC
Confidence            579999999999999999997653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=7.4e-06  Score=49.91  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      =|+++|.+||||||+...+...
T Consensus        16 liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999988653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=7.5e-06  Score=49.22  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=18.6

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++++|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.8e-06  Score=50.08  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      =|+|+||+||||+||+++|...
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            4889999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=8.2e-06  Score=50.44  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+|+||+|||||||++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.75  E-value=7.1e-06  Score=49.35  Aligned_cols=22  Identities=36%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +|+++|++||||||+.+.+...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=8.4e-06  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.74  E-value=1.1e-05  Score=51.62  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|+|||||++.+.+...+
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC
Confidence            569999999999999999997653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.74  E-value=8.9e-06  Score=49.35  Aligned_cols=20  Identities=20%  Similarity=0.265  Sum_probs=17.8

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=9.5e-06  Score=50.14  Aligned_cols=22  Identities=32%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+++|++||||||+...|+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999863

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.72  E-value=7.9e-06  Score=52.68  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -|++.||||+|||||++.+....
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38899999999999999998743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.72  E-value=9.6e-06  Score=48.85  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=18.5

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |++.|++||||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999998764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.71  E-value=8e-06  Score=52.86  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +++|+|++|||||||++.+.+...+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~p   70 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYDV   70 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCCc
Confidence            6899999999999999998876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.70  E-value=1e-05  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=18.2

Q ss_pred             EEEE-EECCCCCChHHHHHHHhc
Q psy10117          3 IKIL-ILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~-viG~~~~GKssli~~l~~   24 (135)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3665 569999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.70  E-value=1.4e-05  Score=51.64  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=21.4

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~   28 (135)
                      +.++|++|+|||||++.+.+...+
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCcC
Confidence            579999999999999999997654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=7.4e-06  Score=52.30  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      +.++|++|+|||||++.+.+..
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6799999999999999999853

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.2e-05  Score=53.88  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|.|.|+||||||||+++|..
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHH
Confidence            5799999999999999999973

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.66  E-value=1.3e-05  Score=48.24  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=18.9

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +-|.++|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999988874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.6e-05  Score=49.36  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++++|++|||||+++..+...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            37899999999999999888864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.66  E-value=8e-06  Score=52.40  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      .+.++|++|||||||++.+.+-..+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcCC
Confidence            4789999999999999999997653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.65  E-value=1.9e-05  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcCCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLTT   27 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~~   27 (135)
                      -+.++|++|||||||++.+.+-..
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcc
Confidence            368999999999999999998654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.64  E-value=1.3e-05  Score=49.45  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=19.0

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+++|+|||||||+..+|...
T Consensus        11 I~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            779999999999999999863

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=1.5e-05  Score=50.62  Aligned_cols=22  Identities=36%  Similarity=0.606  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||||+||||+++.+...
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.61  E-value=1.8e-05  Score=49.61  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +++|+|.||+||||||+...|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357888899999999999999863

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=1.6e-05  Score=50.44  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4899999999999999998864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2e-05  Score=51.28  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++++|++|||||+++..+...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            37999999999999999988864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.58  E-value=5.7e-05  Score=50.40  Aligned_cols=26  Identities=15%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcCCCC
Q psy10117          3 IKILILGPIMAGKTVLANALCDLTTA   28 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~~~~   28 (135)
                      -+|+|.|++||||||+++.++...++
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc
Confidence            36899999999999999999986543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.57  E-value=1.9e-05  Score=47.70  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      =.|+++|++||||||+.+.+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.53  E-value=3e-05  Score=51.77  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ++|.|.|+||+|||||+.++..
T Consensus        52 ~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHH
Confidence            5799999999999999999884

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.3e-05  Score=49.04  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=18.7

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -|.+.|.+||||||+.+.|..
T Consensus        21 vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477899999999999999974

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.8e-05  Score=47.53  Aligned_cols=21  Identities=43%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      =|.|-|++|||||||.+.|..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999998874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.49  E-value=2.8e-05  Score=51.55  Aligned_cols=22  Identities=45%  Similarity=0.736  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++||||||||.|.+.+...
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4899999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.48  E-value=2.9e-05  Score=49.88  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|++.||+|+|||++++.+...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4899999999999999999863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=3.6e-05  Score=49.09  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+||||+++.++..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999974

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.43  E-value=4.2e-05  Score=48.28  Aligned_cols=22  Identities=41%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||++++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.39  E-value=4.2e-05  Score=49.04  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.6

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -++|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            367899999999999998875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.36  E-value=5.6e-05  Score=48.35  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      .++|.|++|+|||++++.+...-
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999988643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=6.3e-05  Score=48.32  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++.||+|+|||++++.+.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999973

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=6.9e-05  Score=46.68  Aligned_cols=21  Identities=43%  Similarity=0.559  Sum_probs=18.4

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |+|.||+||||+|+...|...
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            677799999999999988864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=5e-05  Score=52.77  Aligned_cols=23  Identities=43%  Similarity=0.674  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+|+++||+|||||-|.++|..-
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999863

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0001  Score=45.84  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +-|.|.|++|||||||.+.|..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999998854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=8.1e-05  Score=48.05  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||++++.+...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=8.8e-05  Score=46.73  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3789999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=9e-05  Score=46.55  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4789999999999999988753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=8.6e-05  Score=47.89  Aligned_cols=22  Identities=41%  Similarity=0.638  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+|||++++.+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4899999999999999999884

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.22  E-value=0.0001  Score=46.11  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=17.4

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |+++|++||||||.+-+|..
T Consensus         9 i~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           9 VLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68899999999999877763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00011  Score=46.01  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      =|+++|++||||||.+-+|..
T Consensus        11 vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          11 VILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999988873

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00011  Score=46.07  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=18.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      .-|+++|++||||||.+-+|..
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999877763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.19  E-value=0.00026  Score=42.29  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCC--CccCCcce
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAE--EYHPTQGV   37 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~   37 (135)
                      |++-|+=|+|||||++.++..--..  -.+||...
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l   70 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL   70 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC
T ss_pred             EEEecCCCccHHHHHHHHHhhcccccccCCCceEE
Confidence            7789999999999999998653322  23455443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.19  E-value=5.9e-05  Score=48.52  Aligned_cols=20  Identities=30%  Similarity=0.257  Sum_probs=17.4

Q ss_pred             EEECCCCCChHHHHHHHhcC
Q psy10117          6 LILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~~~   25 (135)
                      ++.||+|+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            45699999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=8.5e-05  Score=47.24  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999988864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.19  E-value=8.8e-05  Score=46.53  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=13.7

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      =|+++||+||||||.+-+|..
T Consensus        14 vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          14 VIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             EEEEECSCCC----HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999877763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0001  Score=46.29  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .+++.||+|+||||+++.++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4789999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00017  Score=44.94  Aligned_cols=26  Identities=35%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcCC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~~   26 (135)
                      |+|=|.|.|..||||||+.+.|....
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHCC
Confidence            67778899999999999999887543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=6.8e-05  Score=51.23  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.0

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      +++++|++|||||+++..|..
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            689999999999999976654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.16  E-value=9.5e-05  Score=45.37  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      +=|+|-|..||||||+++.|...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.14  E-value=0.00013  Score=45.52  Aligned_cols=20  Identities=30%  Similarity=0.301  Sum_probs=17.4

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |+++|++||||||.+-.|..
T Consensus        13 i~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57899999999999988763

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00014  Score=47.13  Aligned_cols=22  Identities=41%  Similarity=0.637  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|++.||+|+|||+|++.++..
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            4899999999999999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00023  Score=43.92  Aligned_cols=21  Identities=38%  Similarity=0.322  Sum_probs=18.8

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=3.2e-05  Score=47.31  Aligned_cols=18  Identities=28%  Similarity=0.259  Sum_probs=16.2

Q ss_pred             EEECCCCCChHHHHHHHh
Q psy10117          6 LILGPIMAGKTVLANALC   23 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~   23 (135)
                      +|+|++|+||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            468999999999999886

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00042  Score=42.93  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117          1 MKIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         1 ~~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      |.+=|.|.|..||||||+.+.|...
T Consensus         1 M~~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHC
Confidence            6677899999999999999988643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.98  E-value=0.00024  Score=44.33  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=18.6

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      =|.+.|.+||||||+.+.|..
T Consensus        26 vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.96  E-value=0.0002  Score=48.46  Aligned_cols=22  Identities=41%  Similarity=0.747  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      +++++||+|||||-|.++|...
T Consensus        70 niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHhh
Confidence            5899999999999999998754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.96  E-value=0.00083  Score=45.90  Aligned_cols=81  Identities=19%  Similarity=0.161  Sum_probs=43.0

Q ss_pred             EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCC-ceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117          5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDT-SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV   83 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (135)
                      |+|.||.||||||.+..++......      ..++.+++-++...- ....+++-... ...|.......++..-=++++
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~~~~------~~~i~tiEdPiE~~~~~~~q~~v~~~~-~~~~~~~l~~~lR~dPDvi~i  233 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQELNSS------ERNILTVEDPIEFDIDGIGQTQVNPRV-DMTFARGLRAILRQDPDVVMV  233 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHCCT------TSCEEEEESSCCSCCSSSEEEECBGGG-TBCHHHHHHHHGGGCCSEEEE
T ss_pred             EEEEcCCCCCccHHHHHHhhhhcCC------CceEEEeccCcccccCCCCeeeecCCc-CCCHHHHHHHHHhhcCCEEEe
Confidence            7899999999999999998854321      112334443332111 12233332222 234555555555544344455


Q ss_pred             EeCCCcchH
Q psy10117         84 FNSGVPGHI   92 (135)
Q Consensus        84 ~d~~~~~s~   92 (135)
                      =.+.|.++.
T Consensus       234 gEiRd~~ta  242 (401)
T d1p9ra_         234 GEIRDLETA  242 (401)
T ss_dssp             SCCCSHHHH
T ss_pred             cCcCChHHH
Confidence            555555544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00016  Score=47.30  Aligned_cols=18  Identities=33%  Similarity=0.543  Sum_probs=16.2

Q ss_pred             EEECCCCCChHHHHHHHh
Q psy10117          6 LILGPIMAGKTVLANALC   23 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~   23 (135)
                      +++|++|||||+++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            689999999999998773

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00063  Score=41.65  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      ++|.|++|+|||+|...++...
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5799999999999998887643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.91  E-value=0.00032  Score=42.79  Aligned_cols=24  Identities=38%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCChHHHHHHHhcC
Q psy10117          2 KIKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         2 ~~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++=|.|.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            356789999999999999988653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.84  E-value=0.00017  Score=47.98  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      .+++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            489999999999999999875

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00037  Score=46.15  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++++||+|||||.|.+.+...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            5789999999999999998864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00036  Score=43.26  Aligned_cols=20  Identities=40%  Similarity=0.441  Sum_probs=17.9

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00027  Score=44.45  Aligned_cols=22  Identities=50%  Similarity=0.610  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.77  E-value=0.00046  Score=41.89  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      =|++.|++|+||||+.-.+...-
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            37899999999999999888643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00038  Score=43.79  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      .+|-|.-|||||||+++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            5688999999999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.69  E-value=0.00098  Score=43.12  Aligned_cols=47  Identities=6%  Similarity=0.033  Sum_probs=34.6

Q ss_pred             chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .....+..+|.+++|.|+.++-+..+  ..++++.+     +.|+++|.||+|.
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DL   54 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADK   54 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGG
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccC
Confidence            34557889999999999998876532  33344422     5799999999993

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0015  Score=40.77  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=18.4

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|++|+|||+|...++..
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            679999999999999888754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.68  E-value=0.00054  Score=41.63  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      =|++.|++|+|||++...+...-
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            37899999999999999888643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00047  Score=46.73  Aligned_cols=18  Identities=33%  Similarity=0.600  Sum_probs=16.4

Q ss_pred             EEECCCCCChHHHHHHHh
Q psy10117          6 LILGPIMAGKTVLANALC   23 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~   23 (135)
                      +|+|++|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            688999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.66  E-value=0.0005  Score=46.43  Aligned_cols=22  Identities=55%  Similarity=0.687  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++.||||+|||++...++..
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00053  Score=42.67  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=17.0

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |+|-|+.||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999998887764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00056  Score=43.15  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.3

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|++|+|||+|...++..
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            679999999999999888753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.58  E-value=0.00067  Score=45.01  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +++.||||+|||.|.+.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00062  Score=44.94  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +=|.|.|++||||||+.+.|..
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCcHHHHHHHH
Confidence            5588999999999999887764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.48  E-value=0.00082  Score=40.51  Aligned_cols=23  Identities=30%  Similarity=0.235  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      =|++.|++|+||||+.-.+...-
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            47999999999999998877653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.001  Score=41.22  Aligned_cols=21  Identities=29%  Similarity=0.252  Sum_probs=18.7

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +++.|++|+|||+++..++..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHh
Confidence            789999999999999987753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.42  E-value=0.0009  Score=42.05  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|++|+|||+|+..++..
T Consensus        29 ~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          29 ILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            689999999999999888764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.41  E-value=0.00096  Score=41.63  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +.+.|++|+|||.|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            678999999999999998874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0011  Score=41.82  Aligned_cols=20  Identities=35%  Similarity=0.396  Sum_probs=17.9

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      +++.||+|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999998765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.36  E-value=0.00048  Score=45.05  Aligned_cols=20  Identities=20%  Similarity=0.316  Sum_probs=14.8

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |.|.|++||||||+.+.|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999987754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=41.67  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999863

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0012  Score=41.45  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|++|+|||+|...++..
T Consensus        40 ~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          40 TEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0014  Score=42.83  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=17.1

Q ss_pred             EEEEEECCCCCChHHHHHHHh
Q psy10117          3 IKILILGPIMAGKTVLANALC   23 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~   23 (135)
                      +=|.|.|++|||||||...+.
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHH
Confidence            346789999999999887653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.29  E-value=0.0012  Score=41.32  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=18.9

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      ++|.|++|+|||+|...++...
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5799999999999999887543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.27  E-value=0.0017  Score=43.28  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|=|.-||||||+++.|...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            68999999999999999999874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.22  E-value=0.0019  Score=40.57  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=18.2

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      |.|.|..||||||+.+.|..
T Consensus         4 IgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0014  Score=40.80  Aligned_cols=21  Identities=43%  Similarity=0.393  Sum_probs=18.5

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.18  E-value=0.0016  Score=43.25  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|=|+-||||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.12  E-value=0.0015  Score=43.55  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ++|.|=|.-||||||+++.+...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.08  E-value=0.0018  Score=41.92  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      |.|.|..|+|||||+..+...
T Consensus        47 v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          47 LFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.04  E-value=0.0013  Score=42.61  Aligned_cols=16  Identities=31%  Similarity=0.343  Sum_probs=13.7

Q ss_pred             EEEEECCCCCChHHHH
Q psy10117          4 KILILGPIMAGKTVLA   19 (135)
Q Consensus         4 ki~viG~~~~GKssli   19 (135)
                      .++|+|++|+|||+.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3689999999999865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.03  E-value=0.0021  Score=41.23  Aligned_cols=20  Identities=15%  Similarity=0.165  Sum_probs=17.2

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999877764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.99  E-value=0.002  Score=39.93  Aligned_cols=19  Identities=26%  Similarity=0.371  Sum_probs=16.4

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      ++|.|++|+|||+|...++
T Consensus        29 ~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6789999999999987654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.97  E-value=0.0015  Score=42.64  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=13.4

Q ss_pred             EEEECCCCCChHHHH
Q psy10117          5 ILILGPIMAGKTVLA   19 (135)
Q Consensus         5 i~viG~~~~GKssli   19 (135)
                      ++|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999765

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.89  E-value=0.0022  Score=42.32  Aligned_cols=23  Identities=43%  Similarity=0.582  Sum_probs=19.6

Q ss_pred             EEEEECCCCCChHHHHHHHhcCC
Q psy10117          4 KILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~~   26 (135)
                      -++++||+|+|||.+.+.+...-
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            46888999999999999888643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0035  Score=40.87  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0032  Score=40.18  Aligned_cols=20  Identities=35%  Similarity=0.361  Sum_probs=17.0

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      .+|.|++|+|||+|+..+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999977653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0031  Score=42.93  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      .++|+|.+|+|||+++..++.+
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            3799999999999998877653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.56  E-value=0.0029  Score=39.08  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+++.||+++|||.++..++.-
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            3789999999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0077  Score=40.41  Aligned_cols=18  Identities=33%  Similarity=0.294  Sum_probs=15.0

Q ss_pred             EEEECCCCCChHHHHHHH
Q psy10117          5 ILILGPIMAGKTVLANAL   22 (135)
Q Consensus         5 i~viG~~~~GKssli~~l   22 (135)
                      .+|.|++|+|||+++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            578999999999987543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.81  E-value=0.036  Score=34.60  Aligned_cols=45  Identities=16%  Similarity=0.125  Sum_probs=35.1

Q ss_pred             hccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.|.+++|+.+.+|+ +...+..++-.+..    .++|.+||.||+|.
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL   53 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDL   53 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCccc
Confidence            46889999999998865 45666777766643    27899999999995

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.011  Score=37.24  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=17.5

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      ++|-||+.+|||++++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            57899999999999997763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.74  E-value=0.0098  Score=38.25  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      -+.+.|++++|||+|++.+...
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3678899999999999988864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.74  E-value=0.048  Score=34.16  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=35.0

Q ss_pred             hccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         74 QRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        74 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      ..+.|.+++|+++.+|. ++..+..++-....    .+++.+||.||+|.
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL   53 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDL   53 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGG
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccc
Confidence            46889999999998875 46667777666533    37899999999995

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.67  E-value=0.009  Score=36.16  Aligned_cols=22  Identities=36%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             EEEECCCCCChHHHHHHHhcCC
Q psy10117          5 ILILGPIMAGKTVLANALCDLT   26 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~~   26 (135)
                      ++|+|...||||.+...+....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999987643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.65  E-value=0.012  Score=38.08  Aligned_cols=22  Identities=41%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      |+.++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888754

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.15  Score=28.90  Aligned_cols=42  Identities=5%  Similarity=-0.039  Sum_probs=27.5

Q ss_pred             hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      .+.+++.  +.+  +..+=|+.+..+...+...    +.+|++.|-..|-
T Consensus        70 ~~~~~d~--I~I--DEaQFf~dl~~~~~~~~~~----~~~Viv~GLd~Df  111 (133)
T d1xbta1          70 EALGVAV--IGI--DEGQFFPDIVEFCEAMANA----GKTVIVAALDGTF  111 (133)
T ss_dssp             HHHTCSE--EEE--SSGGGCTTHHHHHHHHHHT----TCEEEEECCSBCT
T ss_pred             hhcccce--EEe--ehhHHHHHHHHHHHHHHhc----CCcEEEEEecccc
Confidence            4556664  333  3345566777777666542    6899999999994

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.60  E-value=0.012  Score=37.37  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCChHHHHHHHhcC
Q psy10117          3 IKILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~~   25 (135)
                      ..|+|.|++|+||+.+.+.+...
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHHh
Confidence            35899999999999999888753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.58  E-value=0.013  Score=36.70  Aligned_cols=19  Identities=42%  Similarity=0.690  Sum_probs=17.2

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      ++|-||+.+|||++++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999766

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.014  Score=37.47  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=17.6

Q ss_pred             EEEECCCCCChHHHHHHHhcC
Q psy10117          5 ILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~~   25 (135)
                      +.+.|++|+|||+|.-.++..
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            468999999999999777743

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.76  E-value=0.018  Score=32.67  Aligned_cols=20  Identities=20%  Similarity=0.204  Sum_probs=16.3

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      .++.+|.|+|||.++-.+..
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47899999999998866553

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.02  E-value=0.035  Score=35.14  Aligned_cols=69  Identities=12%  Similarity=0.019  Sum_probs=37.8

Q ss_pred             EEEEEEecCCCcccccc-hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESV-WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~  122 (135)
                      +.+-+.|+|+.-..... .......++.++++... +..++..+...++.+.......+.+ .-++.|+.+.
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~  186 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV  186 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecC
Confidence            56788888764332222 22223457877777765 4455655555555554433322333 3477888774

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.79  E-value=0.023  Score=36.81  Aligned_cols=22  Identities=32%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      |+.++|++|+|||+|+..+...
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            6789999999999998766643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.67  E-value=0.04  Score=31.70  Aligned_cols=18  Identities=50%  Similarity=0.803  Sum_probs=14.0

Q ss_pred             EEECCCCCChHH-HHHHHh
Q psy10117          6 LILGPIMAGKTV-LANALC   23 (135)
Q Consensus         6 ~viG~~~~GKss-li~~l~   23 (135)
                      +++||-.||||| |++++-
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            578999999999 555543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.057  Score=30.31  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      +-|.+-|.+|+||+++.+.|..
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            5688999999999999998864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.045  Score=33.13  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=17.1

Q ss_pred             EEEEECCC-CCChHHHHHHHh
Q psy10117          4 KILILGPI-MAGKTVLANALC   23 (135)
Q Consensus         4 ki~viG~~-~~GKssli~~l~   23 (135)
                      |+.|.|-. ||||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            78899995 999999987666

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.21  E-value=0.051  Score=34.84  Aligned_cols=20  Identities=40%  Similarity=0.461  Sum_probs=16.7

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      +.+.|++++|||+|+-.++.
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            46899999999999876664

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.034  Score=36.42  Aligned_cols=14  Identities=36%  Similarity=0.520  Sum_probs=12.6

Q ss_pred             EEECCCCCChHHHH
Q psy10117          6 LILGPIMAGKTVLA   19 (135)
Q Consensus         6 ~viG~~~~GKssli   19 (135)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999964

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.90  E-value=0.05  Score=33.14  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCChHHHHHHHhc
Q psy10117          3 IKILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~~   24 (135)
                      ..+++-|++|+|||++...+..
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998876

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.72  E-value=0.035  Score=36.44  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=12.9

Q ss_pred             EEEECCCCCChHHHH
Q psy10117          5 ILILGPIMAGKTVLA   19 (135)
Q Consensus         5 i~viG~~~~GKssli   19 (135)
                      -++.|.+|.|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            378999999999963

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.66  E-value=0.057  Score=34.56  Aligned_cols=20  Identities=45%  Similarity=0.531  Sum_probs=17.1

Q ss_pred             EEEECCCCCChHHHHHHHhc
Q psy10117          5 ILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~~   24 (135)
                      +.+.|++++|||+|...++.
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            45889999999999987774

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.07  Score=33.92  Aligned_cols=19  Identities=26%  Similarity=0.310  Sum_probs=15.5

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      |++.|-.||||||+.-.+.
T Consensus        11 i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHH
Confidence            6789999999999766554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.35  E-value=0.047  Score=35.88  Aligned_cols=15  Identities=33%  Similarity=0.472  Sum_probs=13.2

Q ss_pred             EEEECCCCCChHHHH
Q psy10117          5 ILILGPIMAGKTVLA   19 (135)
Q Consensus         5 i~viG~~~~GKssli   19 (135)
                      -++.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999985

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.27  E-value=0.074  Score=33.96  Aligned_cols=69  Identities=14%  Similarity=0.084  Sum_probs=34.5

Q ss_pred             EEEEEEecCCCcccccchHHhh-ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESVWPAFQ-RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~  122 (135)
                      +.+-+.|+|+.-.......... ..++.++++.. .+..++..+...++.+.+.....+.++ -+|.|+.+.
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~  189 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT  189 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcc
Confidence            5667788776433222222222 24555555543 334445555555555443332234554 377888764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.20  E-value=0.035  Score=35.74  Aligned_cols=22  Identities=32%  Similarity=0.324  Sum_probs=18.1

Q ss_pred             EEEEECCCCCChHHHHHHHhcC
Q psy10117          4 KILILGPIMAGKTVLANALCDL   25 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~~   25 (135)
                      |+.++|++|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6789999999999998765543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.087  Score=33.30  Aligned_cols=19  Identities=37%  Similarity=0.586  Sum_probs=14.3

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      |++.|-.||||||+.-.|.
T Consensus        23 ii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3455999999999865554

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.81  E-value=0.08  Score=31.69  Aligned_cols=15  Identities=40%  Similarity=0.541  Sum_probs=12.9

Q ss_pred             EEEEECCCCCChHHH
Q psy10117          4 KILILGPIMAGKTVL   18 (135)
Q Consensus         4 ki~viG~~~~GKssl   18 (135)
                      ++++.+|.|+|||..
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.77  E-value=0.042  Score=30.64  Aligned_cols=15  Identities=27%  Similarity=-0.037  Sum_probs=12.3

Q ss_pred             EEEEECCCCCChHHH
Q psy10117          4 KILILGPIMAGKTVL   18 (135)
Q Consensus         4 ki~viG~~~~GKssl   18 (135)
                      ++++.+++|+|||..
T Consensus         9 ~~il~~~tGsGKT~~   23 (140)
T d1yksa1           9 TTVLDFHPGAGKTRR   23 (140)
T ss_dssp             EEEECCCTTSSTTTT
T ss_pred             cEEEEcCCCCChhHH
Confidence            567889999999933

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=88.25  E-value=0.15  Score=36.92  Aligned_cols=19  Identities=32%  Similarity=0.415  Sum_probs=16.2

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      |++.|++|+|||.-.+.++
T Consensus        89 IiisGeSGsGKTe~~k~il  107 (684)
T d1lkxa_          89 VIISGESGAGKTEASKKIM  107 (684)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            8999999999999776554

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.00  E-value=0.07  Score=32.21  Aligned_cols=16  Identities=50%  Similarity=0.727  Sum_probs=13.7

Q ss_pred             EEEEECCCCCChHHHH
Q psy10117          4 KILILGPIMAGKTVLA   19 (135)
Q Consensus         4 ki~viG~~~~GKssli   19 (135)
                      ++++.+|+|+|||...
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            5789999999999753

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.54  E-value=0.17  Score=36.74  Aligned_cols=20  Identities=35%  Similarity=0.366  Sum_probs=16.6

Q ss_pred             EEEEECCCCCChHHHHHHHh
Q psy10117          4 KILILGPIMAGKTVLANALC   23 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~   23 (135)
                      -|++.|++|+|||.-.+.++
T Consensus       127 sIiisGeSGaGKTe~~k~il  146 (712)
T d1d0xa2         127 SLLITGESGAGKTENTKKVI  146 (712)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEeCCCCCCHHHHHHHHH
Confidence            38999999999998776554

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.47  E-value=0.12  Score=32.80  Aligned_cols=16  Identities=25%  Similarity=-0.022  Sum_probs=13.0

Q ss_pred             EEEEECCCCCChHH-HH
Q psy10117          4 KILILGPIMAGKTV-LA   19 (135)
Q Consensus         4 ki~viG~~~~GKss-li   19 (135)
                      .+++.+++|+|||. ++
T Consensus        11 ~~lv~~~TGsGKT~~~l   27 (305)
T d2bmfa2          11 LTIMDLHPGAGKTKRYL   27 (305)
T ss_dssp             EEEECCCTTSSTTTTHH
T ss_pred             cEEEEECCCCCHHHHHH
Confidence            46889999999994 44

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.20  E-value=0.19  Score=36.55  Aligned_cols=19  Identities=37%  Similarity=0.316  Sum_probs=16.3

Q ss_pred             EEEECCCCCChHHHHHHHh
Q psy10117          5 ILILGPIMAGKTVLANALC   23 (135)
Q Consensus         5 i~viG~~~~GKssli~~l~   23 (135)
                      |++.|++|+|||.-.+.++
T Consensus        94 IiisGeSGaGKTe~~k~il  112 (710)
T d1br2a2          94 ILCTGESGAGKTENTKKVI  112 (710)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            8999999999998766554

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.52  E-value=0.19  Score=37.00  Aligned_cols=18  Identities=50%  Similarity=0.541  Sum_probs=14.5

Q ss_pred             EEEECCCCCChHHHHHHH
Q psy10117          5 ILILGPIMAGKTVLANAL   22 (135)
Q Consensus         5 i~viG~~~~GKssli~~l   22 (135)
                      |++.|++|+|||.-.+.+
T Consensus       126 IiisGeSGaGKTe~~K~i  143 (794)
T d2mysa2         126 ILITGESGAGKTVNTKRV  143 (794)
T ss_dssp             EEEEECTTSCHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            899999999999655433

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=85.54  E-value=0.26  Score=36.29  Aligned_cols=19  Identities=37%  Similarity=0.337  Sum_probs=15.0

Q ss_pred             EEEEECCCCCChHHHHHHH
Q psy10117          4 KILILGPIMAGKTVLANAL   22 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l   22 (135)
                      -|++.|++|+|||.-.+.+
T Consensus       123 ~IiisGESGaGKTe~~K~i  141 (789)
T d1kk8a2         123 SCLITGESGAGKTENTKKV  141 (789)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            3789999999999764433

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=85.36  E-value=0.26  Score=35.84  Aligned_cols=20  Identities=40%  Similarity=0.394  Sum_probs=16.3

Q ss_pred             EEEEECCCCCChHHHHHHHh
Q psy10117          4 KILILGPIMAGKTVLANALC   23 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~   23 (135)
                      -|++.|++|+|||.-.+.++
T Consensus        96 ~IiisGeSGsGKTe~~k~il  115 (730)
T d1w7ja2          96 SIIVSGESGAGKTVSAKYAM  115 (730)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            48899999999998766554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.91  E-value=0.33  Score=27.76  Aligned_cols=19  Identities=26%  Similarity=0.415  Sum_probs=15.4

Q ss_pred             EEECCCCCChHHHHHHHhc
Q psy10117          6 LILGPIMAGKTVLANALCD   24 (135)
Q Consensus         6 ~viG~~~~GKssli~~l~~   24 (135)
                      +++||-.|||||-+-+...
T Consensus        11 lI~GpMfSGKTteLi~~~~   29 (141)
T d1xx6a1          11 VIVGPMYSGKSEELIRRIR   29 (141)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEEeccccHHHHHHHHHHH
Confidence            5789999999998765553

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=84.60  E-value=2.5  Score=24.77  Aligned_cols=50  Identities=12%  Similarity=-0.048  Sum_probs=30.3

Q ss_pred             HHhhccCcEEEEEEeCCCcch---HHH-------HHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117         71 PAFQRDVHGIIFVFNSGVPGH---ISE-------LLLFYDYFVTQSDLNNHKCLLIDNVKP  121 (135)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~s---~~~-------~~~~~~~i~~~~~~~~~p~ivv~nK~D  121 (135)
                      ...+.++|.+++.-.......   .+.       ++.+.+.+.++.+ .+.-+++++|=.|
T Consensus        95 ~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~-~~~~vlvv~NPvd  154 (175)
T d7mdha1          95 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS-KNVKVLVVGNPCN  154 (175)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSC-TTCEEEECSSSHH
T ss_pred             hhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CCcEEEEecCcHH
Confidence            345678999998876654332   122       2345555655543 2577888888766

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.22  E-value=0.19  Score=30.95  Aligned_cols=16  Identities=25%  Similarity=0.329  Sum_probs=13.2

Q ss_pred             EEEEECCCCCChHHHH
Q psy10117          4 KILILGPIMAGKTVLA   19 (135)
Q Consensus         4 ki~viG~~~~GKssli   19 (135)
                      .+++++|+|+|||...
T Consensus        60 ~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          60 SFAATAPTGVGKTSFG   75 (237)
T ss_dssp             CEECCCCBTSCSHHHH
T ss_pred             CEEEEecCCChHHHHH
Confidence            4688999999999653

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.52  E-value=0.65  Score=28.02  Aligned_cols=64  Identities=14%  Similarity=-0.010  Sum_probs=36.7

Q ss_pred             EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117         53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG  122 (135)
Q Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~  122 (135)
                      +.+-|.|+++.-..  .....+..+|.++++.... ..++......+..+.+..   ..++-+|.|+.+.
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~---~~~~~iv~N~~~~  173 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG---TKVLGVVVNRITT  173 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CEEEEEEEEEECT
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhcc---ccccccccccccc
Confidence            44678888775432  2334566789999888764 334444444343333322   2345578899863

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.21  E-value=1.3  Score=25.33  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=16.3

Q ss_pred             eEEEEEECC-CCCChHHHHHHHhc
Q psy10117          2 KIKILILGP-IMAGKTVLANALCD   24 (135)
Q Consensus         2 ~~ki~viG~-~~~GKssli~~l~~   24 (135)
                      .+||.|+|- .++|.+.......+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~   26 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNG   26 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHH
Confidence            479999995 78888765544333

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.34  Score=32.58  Aligned_cols=16  Identities=31%  Similarity=0.241  Sum_probs=13.8

Q ss_pred             EEEEECCCCCChHHHH
Q psy10117          4 KILILGPIMAGKTVLA   19 (135)
Q Consensus         4 ki~viG~~~~GKssli   19 (135)
                      ..+|.+..|+|||+.+
T Consensus        18 ~~lv~A~AGsGKT~~l   33 (485)
T d1w36b1          18 ERLIEASAGTGKTFTI   33 (485)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEEcCchHHHHHH
Confidence            4688999999999876

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.56  E-value=0.52  Score=29.28  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=17.0

Q ss_pred             EEEEEECCCCCChHHHHHHHh
Q psy10117          3 IKILILGPIMAGKTVLANALC   23 (135)
Q Consensus         3 ~ki~viG~~~~GKssli~~l~   23 (135)
                      ...++.|+.|||||-+.-+..
T Consensus        77 ~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          77 MDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             CEEEEECCCCTTTHHHHHHHH
T ss_pred             cCeEEEcCCCCCcHHHHHHHH
Confidence            467899999999998875554

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.18  E-value=0.59  Score=28.12  Aligned_cols=21  Identities=33%  Similarity=0.276  Sum_probs=16.4

Q ss_pred             EEEEECCCCCChHHHHHHHhc
Q psy10117          4 KILILGPIMAGKTVLANALCD   24 (135)
Q Consensus         4 ki~viG~~~~GKssli~~l~~   24 (135)
                      +.++.++.|+|||-+.-.++.
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~  107 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAIN  107 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHH
T ss_pred             CcEEEeCCCCCceehHHhHHH
Confidence            567889999999977665554