Psyllid ID: psy10133

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MSLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIEKLLMQ
ccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccccc
ccEEEEEEHHHHHEccccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHcccccccccccccccccEEEEEcHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEcccHHHHHcHcccccEEcEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccEEccccccccccHHHHHHHHcEccEHcccccccEcccccccccccEEEEEEcccccHHHHHHHHHHHHHHccHcccccccc
MSLFLQIkeynftgqgpvptialgsdtggstrnpasycgvvgfkptygtvsrhgliplvnsmdvpgiltrTVEDCATVYNViagsdhrdpttvqknispvtldqldlsrlvigvpeeyksehispevMDTWESVLKLMAKAGAQVkkvslphtqssivTYSILNQCEVASNMARYTGlfyghrvtpsvnsTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGvhalvtpttlttaplvsqyiqldnreqcsvqdyctqpanlagcpaisvpinlsheklpvSIQLMAPNFQDGLLLNLAHWLESQVEFNIEKLLMQ
MSLFLQIKEYnftgqgpvpTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNViagsdhrdpttvqknispvtldqldlsRLVIGVPEeyksehispeVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIEKLLMQ
MSLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHalvtpttlttaplvSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIEKLLMQ
***FLQIKEYNFTGQGPVPTIALG********NPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIEK****
*SLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFN***LL**
MSLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIEKLLMQ
*SLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLFLQIKEYNFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIEKLLMQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q17H91494 Glutamyl-tRNA(Gln) amidot N/A N/A 0.909 0.629 0.601 1e-110
B0WAE3496 Glutamyl-tRNA(Gln) amidot N/A N/A 0.909 0.627 0.617 1e-110
Q7QH64492 Glutamyl-tRNA(Gln) amidot yes N/A 0.906 0.630 0.598 1e-108
Q9VE09508 Glutamyl-tRNA(Gln) amidot yes N/A 0.915 0.616 0.583 1e-106
Q29BT3507 Glutamyl-tRNA(Gln) amidot yes N/A 0.915 0.617 0.574 1e-106
E0VSP9496 Glutamyl-tRNA(Gln) amidot N/A N/A 0.912 0.629 0.541 1e-97
Q29RP9526 Glutamyl-tRNA(Gln) amidot yes N/A 0.926 0.602 0.557 2e-97
Q0VFI5524 Glutamyl-tRNA(Gln) amidot yes N/A 0.918 0.599 0.550 1e-96
Q8AVG9524 Glutamyl-tRNA(Gln) amidot N/A N/A 0.918 0.599 0.553 2e-96
E2QUD0526 Glutamyl-tRNA(Gln) amidot yes N/A 0.923 0.600 0.557 3e-96
>sp|Q17H91|GATA_AEDAE Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Aedes aegypti GN=gatA PE=3 SV=1 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/316 (60%), Positives = 240/316 (75%), Gaps = 5/316 (1%)

Query: 22  ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
           ALGSDTGGSTRNPASYCGVVGFKPTYG +SR+GLIPLVNSMDVPGILTRTV+DC  V+N 
Sbjct: 176 ALGSDTGGSTRNPASYCGVVGFKPTYGLLSRYGLIPLVNSMDVPGILTRTVDDCLAVFNA 235

Query: 82  IAGSDHRDPTTVQKNISPVTL---DQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLM 138
           IAG D RD TT++    P++L    ++ L  L +G+P EY  E +S EV+ TW  V  ++
Sbjct: 236 IAGPDDRDSTTIKTFFKPISLPDASKICLKGLKVGIPIEYHCEGLSDEVLTTWTKVADML 295

Query: 139 AKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAET 198
             AGA V  VSLP+T +SI  YSILNQCEVASNMARY G+ +GHR      ST+QL A++
Sbjct: 296 EDAGASVHPVSLPYTSASIFVYSILNQCEVASNMARYDGIEFGHRSDEDA-STEQLYAKS 354

Query: 199 RKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTL 258
           R + F  VVK+RIL+GN+FLL++NY+ YF KALKVR LIA DF R +   V  L+TPTTL
Sbjct: 355 RAEGFNGVVKNRILSGNFFLLRKNYDKYFEKALKVRRLIANDFDRAFQE-VDILLTPTTL 413

Query: 259 TTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQD 318
           + AP  S++IQ +NR+QC+VQD+CTQPAN+ G PA+S+PI LS ++LP+S+QLMAPNF +
Sbjct: 414 SDAPRYSEFIQSNNRDQCAVQDFCTQPANMGGIPALSLPIRLSEQRLPISLQLMAPNFSE 473

Query: 319 GLLLNLAHWLESQVEF 334
             L  +A W+E QV+F
Sbjct: 474 KRLFKVAKWIEEQVKF 489
Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Aedes aegypti (taxid: 7159)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -
>sp|B0WAE3|GATA_CULQU Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Culex quinquefasciatus GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q7QH64|GATA_ANOGA Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Anopheles gambiae GN=gatA PE=3 SV=3 Back     alignment and function description
>sp|Q9VE09|GATA_DROME Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Drosophila melanogaster GN=gatA PE=2 SV=1 Back     alignment and function description
>sp|Q29BT3|GATA_DROPS Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=gatA PE=3 SV=2 Back     alignment and function description
>sp|E0VSP9|GATA_PEDHC Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Pediculus humanus subsp. corporis GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q29RP9|GATA_BOVIN Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Bos taurus GN=QRSL1 PE=2 SV=1 Back     alignment and function description
>sp|Q0VFI5|GATA_XENTR Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Xenopus tropicalis GN=qrsl1 PE=2 SV=1 Back     alignment and function description
>sp|Q8AVG9|GATA_XENLA Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Xenopus laevis GN=qrsl1 PE=2 SV=1 Back     alignment and function description
>sp|E2QUD0|GATA_CANFA Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Canis familiaris GN=QRSL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
312375578400 hypothetical protein AND_13993 [Anophele 0.909 0.777 0.600 1e-108
157131793 494 glutamyl-tRNA(Gln) amidotransferase subu 0.909 0.629 0.601 1e-108
170035642 496 glutamyl-tRNA(Gln) amidotransferase subu 0.909 0.627 0.617 1e-108
194745218 508 GF16420 [Drosophila ananassae] gi|190628 0.915 0.616 0.586 1e-108
156551449 523 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.912 0.596 0.598 1e-108
195112410 508 GI22341 [Drosophila mojavensis] gi|19391 0.915 0.616 0.586 1e-107
195400018 508 GJ14217 [Drosophila virilis] gi|19414217 0.915 0.616 0.583 1e-106
158287623 492 AGAP004057-PA [Anopheles gambiae str. PE 0.906 0.630 0.598 1e-106
328701989 569 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.929 0.558 0.570 1e-106
195450833 506 GK13718 [Drosophila willistoni] gi|19416 0.912 0.616 0.583 1e-106
>gi|312375578|gb|EFR22924.1| hypothetical protein AND_13993 [Anopheles darlingi] Back     alignment and taxonomy information
 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 238/313 (76%), Gaps = 2/313 (0%)

Query: 22  ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
           ALGSDTGGSTRNPASYCG+VG KPTYG +SRHGLIPLVNSMDVPGI+TRT+EDCA V N 
Sbjct: 82  ALGSDTGGSTRNPASYCGIVGLKPTYGLLSRHGLIPLVNSMDVPGIMTRTIEDCAIVLNA 141

Query: 82  IAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKA 141
           IAG D RD TTV++   P+ LD   +  L +G+P EY  E +  EV++ W  V  L+ +A
Sbjct: 142 IAGPDDRDSTTVKRPFLPIKLDSSFVKGLRVGIPREYHCEGLDKEVLECWTRVADLLERA 201

Query: 142 GAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKD 201
           GA V  VS+P+T SSI  YSILNQCEV+SNMARY G+ YGHR      ST+QL A+TR +
Sbjct: 202 GATVTSVSMPYTASSIFVYSILNQCEVSSNMARYDGIEYGHRSKEDA-STEQLYAKTRAE 260

Query: 202 AFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTTA 261
            F  VVK+RIL+GNYFLL+RNY+ YF KALKVR LIA+DF+R +   V  L+TPTTL+ A
Sbjct: 261 GFNSVVKNRILSGNYFLLRRNYDKYFEKALKVRRLIAEDFVRAFKD-VDILLTPTTLSDA 319

Query: 262 PLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLL 321
           PL   +I+ +NR+QC+VQD+CTQ AN+AG PA+S+PI+LS  +LP+S+QLM  +F + LL
Sbjct: 320 PLYKDFIRSNNRDQCAVQDFCTQSANMAGIPALSLPISLSSRRLPLSLQLMGDHFSEELL 379

Query: 322 LNLAHWLESQVEF 334
           L +  W+E +V+F
Sbjct: 380 LRVGAWIEKEVDF 392

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157131793|ref|XP_001655938.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Aedes aegypti] gi|122118421|sp|Q17H91.1|GATA_AEDAE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Short=Glu-AdT subunit A gi|108881773|gb|EAT45998.1| AAEL002766-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170035642|ref|XP_001845677.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Culex quinquefasciatus] gi|353558706|sp|B0WAE3.1|GATA_CULQU RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Short=Glu-AdT subunit A gi|167877796|gb|EDS41179.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|194745218|ref|XP_001955085.1| GF16420 [Drosophila ananassae] gi|190628122|gb|EDV43646.1| GF16420 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|156551449|ref|XP_001604590.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A homolog [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195112410|ref|XP_002000766.1| GI22341 [Drosophila mojavensis] gi|193917360|gb|EDW16227.1| GI22341 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195400018|ref|XP_002058615.1| GJ14217 [Drosophila virilis] gi|194142175|gb|EDW58583.1| GJ14217 [Drosophila virilis] Back     alignment and taxonomy information
>gi|158287623|ref|XP_309611.3| AGAP004057-PA [Anopheles gambiae str. PEST] gi|353558939|sp|Q7QH64.3|GATA_ANOGA RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Short=Glu-AdT subunit A gi|157019511|gb|EAA05381.3| AGAP004057-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|328701989|ref|XP_001952547.2| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195450833|ref|XP_002072653.1| GK13718 [Drosophila willistoni] gi|194168738|gb|EDW83639.1| GK13718 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
FB|FBgn0260779508 gatA "glutamyl-tRNA amidotrans 0.915 0.616 0.552 5.1e-90
UNIPROTKB|F1MYR8526 QRSL1 "Glutamyl-tRNA(Gln) amid 0.926 0.602 0.536 1.3e-84
UNIPROTKB|Q29RP9526 QRSL1 "Glutamyl-tRNA(Gln) amid 0.926 0.602 0.536 1.3e-84
UNIPROTKB|E2QUD0526 QRSL1 "Glutamyl-tRNA(Gln) amid 0.923 0.600 0.536 1.2e-83
UNIPROTKB|F1RT46526 LOC100737502 "Glutamyl-tRNA(Gl 0.926 0.602 0.529 1.7e-82
ZFIN|ZDB-GENE-030131-5540536 qrsl1 "glutaminyl-tRNA synthas 0.915 0.583 0.511 1.7e-82
UNIPROTKB|F1NLA0514 QRSL1 "Uncharacterized protein 0.926 0.616 0.523 4.5e-82
UNIPROTKB|Q9H0R6528 QRSL1 "Glutamyl-tRNA(Gln) amid 0.926 0.600 0.525 2e-81
RGD|1359490525 Qrsl1 "glutaminyl-tRNA synthas 0.929 0.605 0.520 3.2e-81
MGI|MGI:1923813525 Qrsl1 "glutaminyl-tRNA synthas 0.926 0.603 0.523 4.1e-81
FB|FBgn0260779 gatA "glutamyl-tRNA amidotransferase subunit A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 178/322 (55%), Positives = 228/322 (70%)

Query:    22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
             A+GSDTGGSTRNPASYCGVVG KPTYG VSRHGLIPLVNSMDVPGI  R+V DC  V N 
Sbjct:   176 AIGSDTGGSTRNPASYCGVVGLKPTYGLVSRHGLIPLVNSMDVPGIFARSVSDCVAVLNT 235

Query:    82 IAGSDHRDPTTVQKNISPVTLD---QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLM 138
             +AG D  D TT+++  + + L    Q+DLS + IG+P+EY    +S EV++TW  V  L+
Sbjct:   236 VAGPDKLDSTTIRQPFTRLHLPEVGQIDLSTVRIGIPKEYHCHGLSAEVLETWSKVADLL 295

Query:   139 AKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAET 198
               +GA V++VSLP+T +SI  Y+ILNQCEVASNMARY G+ YGHR T    ST+QL A +
Sbjct:   296 ECSGASVRQVSLPNTAASIFVYTILNQCEVASNMARYDGIEYGHRATDE-RSTEQLYALS 354

Query:   199 RKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSG-----VHXXX 253
             R + F  VVK+RIL GN+ LLK+NY++YF KAL+VR LIA+DF RV+ S      V    
Sbjct:   355 RAEGFNDVVKTRILTGNFLLLKKNYDHYFEKALRVRRLIAEDFARVFDSSAKEERVDILL 414

Query:   254 XXXXXXXXXXXSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMA 313
                          +  L NR+QC+VQD+CTQPAN+AG PA+S+PI LS   LP+S+QLM+
Sbjct:   415 TPTTLTEAPLYKDFASLTNRDQCAVQDFCTQPANMAGIPAVSIPIRLSQAGLPLSLQLMS 474

Query:   314 PNFQDGLLLNLAHWLESQVEFN 335
              +  + LLL +A W+E+QVEF+
Sbjct:   475 NSLNEQLLLTVARWIEAQVEFD 496
GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS
GO:0030717 "karyosome formation" evidence=IMP
GO:0048477 "oogenesis" evidence=IMP
GO:0006412 "translation" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
UNIPROTKB|F1MYR8 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RP9 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUD0 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT46 LOC100737502 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5540 qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLA0 QRSL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0R6 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359490 Qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1923813 Qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CZN8GATA_MOUSE6, ., 3, ., 5, ., -0.54850.92690.6038yesN/A
C0R5M6GATA_WOLWR6, ., 3, ., 5, ., -0.39150.88300.6175yesN/A
Q0BTK2GATA_GRABC6, ., 3, ., 5, ., -0.39420.89760.6152yesN/A
A0LP22GATA_SYNFM6, ., 3, ., 5, ., -0.38990.91520.6440yesN/A
Q9VE09GATA_DROME6, ., 3, ., 5, ., -0.58380.91520.6161yesN/A
Q8R679GATA_FUSNN6, ., 3, ., 5, ., -0.42410.90930.6386yesN/A
Q29RP9GATA_BOVIN6, ., 3, ., 5, ., -0.55790.92690.6026yesN/A
A7FYL3GATA_CLOB16, ., 3, ., 5, ., -0.39750.91810.6474yesN/A
A8F5H6GATA_THELT6, ., 3, ., 5, ., -0.41640.89760.6573yesN/A
A0AJK8GATA_LISW66, ., 3, ., 5, ., -0.40930.91220.6459yesN/A
C0Z4E4GATA_BREBN6, ., 3, ., 5, ., -0.42030.89760.6265yesN/A
B3CMT8GATA_WOLPP6, ., 3, ., 5, ., -0.39150.88300.6188yesN/A
E2QUD0GATA_CANFA6, ., 3, ., 5, ., -0.55790.92390.6007yesN/A
C0QRF9GATA_PERMH6, ., 3, ., 5, ., -0.38920.90050.6350yesN/A
Q04BV7GATA_LACDB6, ., 3, ., 5, ., -0.39680.88590.6312yesN/A
Q5NPF3GATA_ZYMMO6, ., 3, ., 5, ., -0.38850.90640.6300yesN/A
Q92AQ3GATA_LISIN6, ., 3, ., 5, ., -0.40930.91220.6459yesN/A
A0Q2Q0GATA_CLONN6, ., 3, ., 5, ., -0.39180.89760.6329yesN/A
B1L1G9GATA_CLOBM6, ., 3, ., 5, ., -0.39250.91520.6453yesN/A
B1INF7GATA_CLOBK6, ., 3, ., 5, ., -0.39560.91520.6453yesN/A
F7A3P2GATA_ORNAN6, ., 3, ., 5, ., -0.54280.91520.5973yesN/A
B8D125GATA_HALOH6, ., 3, ., 5, ., -0.41320.90930.6519yesN/A
A4J6Z8GATA_DESRM6, ., 3, ., 5, ., -0.43210.89760.6329yesN/A
Q29BT3GATA_DROPS6, ., 3, ., 5, ., -0.57450.91520.6173yesN/A
A5I6Z3GATA_CLOBH6, ., 3, ., 5, ., -0.39750.91810.6474yesN/A
Q9X0Z9GATA_THEMA6, ., 3, ., 5, ., -0.39490.89760.6463yesN/A
Q5FWT5GATA_RAT6, ., 3, ., 5, ., -0.54540.92980.6057yesN/A
C1FLD9GATA_CLOBJ6, ., 3, ., 5, ., -0.39440.91810.6474yesN/A
C3KU97GATA_CLOB66, ., 3, ., 5, ., -0.39250.91520.6453yesN/A
C1F857GATA_ACIC56, ., 3, ., 5, ., -0.42580.88590.6365yesN/A
Q73HP2GATA_WOLPM6, ., 3, ., 5, ., -0.39480.88300.6175yesN/A
O66610GATA_AQUAE6, ., 3, ., 5, ., -0.39800.90050.6443yesN/A
C1KW54GATA_LISMC6, ., 3, ., 5, ., -0.40310.91220.6459yesN/A
F1QAJ4GATA_DANRE6, ., 3, ., 5, ., -0.53330.91520.5839yesN/A
B8DFG8GATA_LISMH6, ., 3, ., 5, ., -0.40620.91220.6459yesN/A
Q8Y6D2GATA_LISMO6, ., 3, ., 5, ., -0.40620.91220.6459yesN/A
Q71YR3GATA_LISMF6, ., 3, ., 5, ., -0.40620.91220.6459yesN/A
Q7QH64GATA_ANOGA6, ., 3, ., 5, ., -0.59810.90640.6300yesN/A
Q1IUE4GATA_KORVE6, ., 3, ., 5, ., -0.41290.88590.6312yesN/A
B9E826GATA_MACCJ6, ., 3, ., 5, ., -0.41290.88880.6320yesN/A
Q746Y7GATA_GEOSL6, ., 3, ., 5, ., -0.39550.89760.6329yesN/A
Q0VFI5GATA_XENTR6, ., 3, ., 5, ., -0.55060.91810.5992yesN/A
Q9H0R6GATA_HUMAN6, ., 3, ., 5, ., -0.54680.92690.6003yesN/A
A7GIK2GATA_CLOBL6, ., 3, ., 5, ., -0.39130.91810.6474yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 1e-119
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 1e-97
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 4e-95
pfam01425431 pfam01425, Amidase, Amidase 7e-82
PRK07139439 PRK07139, PRK07139, amidase; Provisional 1e-54
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 1e-40
PRK09201465 PRK09201, PRK09201, amidase; Provisional 2e-40
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 4e-33
PRK07056454 PRK07056, PRK07056, amidase; Provisional 4e-31
PRK07235502 PRK07235, PRK07235, amidase; Provisional 2e-30
PRK05962424 PRK05962, PRK05962, amidase; Validated 2e-28
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 1e-27
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 5e-26
PRK08310395 PRK08310, PRK08310, amidase; Provisional 2e-25
PRK08137497 PRK08137, PRK08137, amidase; Provisional 1e-24
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 2e-22
PRK06170490 PRK06170, PRK06170, amidase; Provisional 2e-21
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 5e-21
PRK07869468 PRK07869, PRK07869, amidase; Provisional 2e-19
PRK06828491 PRK06828, PRK06828, amidase; Provisional 1e-18
PRK07042464 PRK07042, PRK07042, amidase; Provisional 6e-18
PRK06707536 PRK06707, PRK06707, amidase; Provisional 7e-17
PRK12470462 PRK12470, PRK12470, amidase; Provisional 4e-14
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 1e-13
PRK07486484 PRK07486, PRK07486, amidase; Provisional 1e-11
PRK11910615 PRK11910, PRK11910, amidase; Provisional 4e-11
PRK06529482 PRK06529, PRK06529, amidase; Provisional 5e-11
PRK06061483 PRK06061, PRK06061, amidase; Provisional 2e-10
PRK07487469 PRK07487, PRK07487, amidase; Provisional 4e-10
PRK06061483 PRK06061, PRK06061, amidase; Provisional 8e-08
PRK06565566 PRK06565, PRK06565, amidase; Validated 1e-06
PRK07486484 PRK07486, PRK07486, amidase; Provisional 1e-05
PRK07042464 PRK07042, PRK07042, amidase; Provisional 1e-04
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information 
 Score =  351 bits (904), Expect = e-119
 Identities = 135/310 (43%), Positives = 185/310 (59%), Gaps = 5/310 (1%)

Query: 21  IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
            ALGSDTGGS R PA++CGVVG KPTYG VSR+GLI   +S+D  G   RTVED A + N
Sbjct: 154 AALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLN 213

Query: 81  VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
            IAG D +D T+    +   T     D+  L IGVP+EY  E + PEV +  E+ +K + 
Sbjct: 214 AIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYFGEGLDPEVKEAVEAAIKKLE 273

Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
             GA++ +VSLPHT+ ++  Y I+   E +SN+ARY G+ YG+R        +++  +TR
Sbjct: 274 DLGAEIVEVSLPHTKYALPAYYIIAPAEASSNLARYDGVRYGYRA-EDAKDLEEMYEKTR 332

Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLT 259
            + FG  VK RI+ G Y L    Y+ Y+LKA KVR+LI QDF + +   V  ++ PT  T
Sbjct: 333 SEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEK-VDVILGPTAPT 391

Query: 260 TAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
           TA  + +  + D+     + D  T PANLAG PAISVP       LPV +QL+   F + 
Sbjct: 392 TAFKIGE--KTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEE 449

Query: 320 LLLNLAHWLE 329
            LLN+A+  E
Sbjct: 450 TLLNVAYAFE 459

Length = 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK08137497 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK07139439 amidase; Provisional 100.0
PRK07487469 amidase; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
PRK07056454 amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK12470462 amidase; Provisional 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK06529482 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
PRK06828491 amidase; Provisional 100.0
PRK06707536 amidase; Provisional 100.0
PRK11910615 amidase; Provisional 100.0
KOG1211|consensus506 100.0
PRK06565566 amidase; Validated 100.0
KOG1212|consensus560 100.0
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-62  Score=461.21  Aligned_cols=307  Identities=42%  Similarity=0.670  Sum_probs=241.6

Q ss_pred             cccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCC
Q psy10133         11 NFTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDP   90 (342)
Q Consensus        11 ~~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~   90 (342)
                      .||||+|++++|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|.
T Consensus       162 AaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~  241 (475)
T COG0154         162 AAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS  241 (475)
T ss_pred             HHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             -CCccCCCCCcCccCCCCCCcEEEEeccCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcc--hhHHHHHHhHH
Q psy10133         91 -TTVQKNISPVTLDQLDLSRLVIGVPEEYKS-EHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQS--SIVTYSILNQC  166 (342)
Q Consensus        91 -~~~~~p~~~~~~~~~~~~~lrIg~~~~~~~-~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~--~~~~~~~~~~~  166 (342)
                       .+.+.+..+ .....+++++|||++.++.. .+.++++.++++++++.|+++|++|+++++|....  ....|.     
T Consensus       242 ~~~~~~~~~~-~~~~~~~~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga~v~~v~lp~~~~~~~~~~~~-----  315 (475)
T COG0154         242 PLPPPPPVPP-ALAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYALAAYY-----  315 (475)
T ss_pred             ccccccCccc-hhhccCCCCcEEEEECcccccCCCcHHHHHHHHHHHHHHHHCCCEEEeccCCchhhhhhhhHHH-----
Confidence             333222222 11146678899999998876 36788999999999999999999999999985432  222221     


Q ss_pred             HHHHHhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHh
Q psy10133        167 EVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWH  246 (342)
Q Consensus       167 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~  246 (342)
                           +..+++..++.+.. .     . +...+...+.+.++.|+..|...+....+...+.++.+  +.+++.+.++| 
T Consensus       316 -----~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~--~~i~~~~~~~f-  380 (475)
T COG0154         316 -----LARFDGERYGLRAA-D-----L-YGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQK--TLIRRAFDKLF-  380 (475)
T ss_pred             -----HHHhhhhhhhhcch-h-----h-hhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHH--HHHHHHHHHHH-
Confidence                 22233333333211 0     0 33455677999999999999888763333333333222  44588899999 


Q ss_pred             cCCCEEEecCCCCCCCCcch-hhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHH
Q psy10133        247 SGVHALVTPTTLTTAPLVSQ-YIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLA  325 (342)
Q Consensus       247 ~~~D~li~Pt~~~~ap~~~~-~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a  325 (342)
                      +++|+||+||++.++|++++ ...............||.++|++|+|+++||+|++.+|||+||||+|++|+|..||++|
T Consensus       381 ~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a  460 (475)
T COG0154         381 EEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLA  460 (475)
T ss_pred             HhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHH
Confidence            78999999999999999987 21111222223344689999999999999999998889999999999999999999999


Q ss_pred             HHHHHhcCCCccc
Q psy10133        326 HWLESQVEFNIEK  338 (342)
Q Consensus       326 ~~le~~~~~~~~~  338 (342)
                      ++||++++|+...
T Consensus       461 ~~~E~~~~~~~~~  473 (475)
T COG0154         461 AALEQALGWHRRP  473 (475)
T ss_pred             HHHHHhhCCCCCC
Confidence            9999999987654

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>KOG1211|consensus Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>KOG1212|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 4e-58
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 1e-55
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 2e-53
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 8e-50
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 5e-37
2dc0_A434 Crystal Structure Of Amidase Length = 434 8e-20
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 5e-18
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 9e-18
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 4e-14
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 4e-08
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-07
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 1e-04
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 4e-07
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 1e-04
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 6e-06
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 6e-06
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 6e-06
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 6e-06
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 6e-06
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 7e-06
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 7e-06
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 2e-05
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (564), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 183/312 (58%), Gaps = 6/312 (1%)
Query: 21  IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
           ++LGSDTGGS R PAS+CGV+G KPTYG VSR+GL+   +S+D  G+  R  ED A V  
Sbjct: 162 VSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLE 221
Query: 81  VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
           VI+G D +D T+ +  +   + + + ++  L IG+P+E+    + P+V + +E+ +K + 
Sbjct: 222 VISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELE 281
Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
           K G ++K+VSLPH + SI TY I+   E +SN+ARY G+ YG+R         ++ A TR
Sbjct: 282 KEGFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAK-EYKDIFEMYARTR 340
Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXX 259
            + FG  VK RI+ G + L    Y+ Y+LKA KVR LI  DFL+ +   V          
Sbjct: 341 DEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEE-VDVIASPTTPT 399
Query: 260 XXXXXSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
                 +  +L+N  +  + D  T PANLAG PAIS+PI    + LPV  QL+  ++ + 
Sbjct: 400 LPFKFGE--RLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDET 456
Query: 320 LLLNLAHWLESQ 331
            LL +++  E +
Sbjct: 457 TLLQISYLWEQK 468
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 1e-111
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-111
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-111
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 1e-106
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 1e-100
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 4e-98
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 3e-96
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 5e-87
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 7e-72
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 7e-47
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
 Score =  331 bits (850), Expect = e-111
 Identities = 126/323 (39%), Positives = 181/323 (56%), Gaps = 23/323 (7%)

Query: 21  IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
            ALGSDTGGS R PAS CGVVG+KPTYG VSR+GL+   +S+D  G +T+TV D A +  
Sbjct: 157 AALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILME 216

Query: 81  VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
           +I+G D  D TTV + +  ++  +  +S +   VPEE     I   V + +E  LKL+ +
Sbjct: 217 IISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLER 276

Query: 141 AGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRK 200
            GA+V++V +PH + S+ TY ++   E +SN+AR+ G+ YG R+        ++  +TR 
Sbjct: 277 LGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEK--GLREMYMKTRN 334

Query: 201 DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLTT 260
             FG  V+ RI+ G + L    YE YF KA+KVR  I+ +   V      A++TPT+  T
Sbjct: 335 VGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ-YDAILTPTSPVT 393

Query: 261 A--------PLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLM 312
           A        PL + Y+           D  T PANLAG PAISVP   S   LPV +Q++
Sbjct: 394 AFKIGEIKDPL-TYYL----------MDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVI 441

Query: 313 APNFQDGLLLNLAHWLESQVEFN 335
              F DG +  +A  +E    +N
Sbjct: 442 GRRFADGKVFRIARAIEKNSPYN 464
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
Probab=100.00  E-value=9.7e-67  Score=494.42  Aligned_cols=323  Identities=36%  Similarity=0.576  Sum_probs=274.1

Q ss_pred             ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133         12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT   91 (342)
Q Consensus        12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~   91 (342)
                      ||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|.|+|+.|+.
T Consensus       160 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~  239 (485)
T 3ip4_A          160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST  239 (485)
T ss_dssp             HHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred             HHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CccCCCCCcCcc-CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHH
Q psy10133         92 TVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVAS  170 (342)
Q Consensus        92 ~~~~p~~~~~~~-~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~  170 (342)
                      +.+.|+.++... ..+.+++||||+.+++...++++++++++++++.|+++|++|+++++|........|..++..|+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~  319 (485)
T 3ip4_A          240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASS  319 (485)
T ss_dssp             SCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccccCccchhhhhccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHHHHHHHHHH
Confidence            887776554333 4467899999999877667899999999999999999999999999998766677788888899999


Q ss_pred             HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133        171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH  250 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D  250 (342)
                      ++.+|++..++++.. ....+++++...+...+.+.++.++..|.........+.+|.++++.|+.+++.+.++| +++|
T Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~-~~~D  397 (485)
T 3ip4_A          320 NLSRFDGIRYGYHSK-EAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVF-ENYD  397 (485)
T ss_dssp             HTTTCSSSSSSCCCT-TCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHH-TTCS
T ss_pred             HHHhhhhhhcccccc-ccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence            998887766654432 34567777766666778898988888776433323333457889999999999999999 7999


Q ss_pred             EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133        251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES  330 (342)
Q Consensus       251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~  330 (342)
                      +||+||++.+||+++.... +.. ..+....||.++|++|+|+++||+|++ +|||+||||+|++|+|+.||++|+++|+
T Consensus       398 ~ll~Pt~~~~a~~~~~~~~-~~~-~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A~~lE~  474 (485)
T 3ip4_A          398 VVVGPTAPTTAFNLGEEID-DPL-TMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYET  474 (485)
T ss_dssp             EEEEESSSSSCCBTTTSTT-CHH-HHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCCcccccC-ChH-HHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHHHHHHH
Confidence            9999999999999876421 111 111123489999999999999999985 9999999999999999999999999999


Q ss_pred             hcCCCcccc
Q psy10133        331 QVEFNIEKL  339 (342)
Q Consensus       331 ~~~~~~~~~  339 (342)
                      +++|+.+++
T Consensus       475 ~~~~~~~~p  483 (485)
T 3ip4_A          475 QYNLHDVYE  483 (485)
T ss_dssp             HSCCTTTGG
T ss_pred             hcCcccCCC
Confidence            999987654
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 3e-88
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 2e-81
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 2e-29
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 6e-29
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 3e-22
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  271 bits (694), Expect = 3e-88
 Identities = 116/315 (36%), Positives = 180/315 (57%), Gaps = 6/315 (1%)

Query: 21  IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
           ++LGSDTGGS R PA+YCGVVG KPTYG VSR GL+   +S+D  G LTR V+D A V  
Sbjct: 169 LSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLE 228

Query: 81  VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
            I+G+D  D T+   +    T +   D+  L + +P+EY  E ++ +V +  ++ ++ + 
Sbjct: 229 AISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLK 288

Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
             GA V++VSLP+T+  I +Y ++   E +SN++R+ G+ YG+  +   +S ++L   +R
Sbjct: 289 SLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYH-SKEAHSLEELYKMSR 347

Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHALVTPTTLT 259
            + FG  VK RI  G + L    Y+ Y+ K+ KVR+LI  DF +V+      +V PT  T
Sbjct: 348 SEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE-NYDVVVGPTAPT 406

Query: 260 TAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
           TA  + +  ++D+       D  T P NLAG P ISVP   S    P+ +Q +   F + 
Sbjct: 407 TAFNLGE--EIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEK 463

Query: 320 LLLNLAHWLESQVEF 334
            L  +A+  E+Q   
Sbjct: 464 TLYRVAYQYETQYNL 478
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=9.5e-66  Score=489.84  Aligned_cols=323  Identities=36%  Similarity=0.564  Sum_probs=281.4

Q ss_pred             ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133         12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT   91 (342)
Q Consensus        12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~   91 (342)
                      ||||+|+++||+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|.++.|+.
T Consensus       160 aavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~  239 (485)
T d2f2aa1         160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST  239 (485)
T ss_dssp             HHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTT
T ss_pred             hhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCcCcc-CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHH
Q psy10133         92 TVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVAS  170 (342)
Q Consensus        92 ~~~~p~~~~~~~-~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~  170 (342)
                      +.+.+..++... ..+.+++|||++.+++...++++++++++++++.|+++|++|+++++|........+..+...|+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~G~~v~ev~lp~~~~~~~~~~~~~~~e~~~  319 (485)
T d2f2aa1         240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASS  319 (485)
T ss_dssp             SCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCCccchhhhhcCCccCCEEEEEcccccCcCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchhhhHHHHHHHHHHHHHH
Confidence            888776655433 5668899999999988888999999999999999999999999999998877777778888889999


Q ss_pred             HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133        171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH  250 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D  250 (342)
                      ++..|.+..++.... ....+++++...+.+.+.+.+..++..+...+.....+..+.++++.++.+.+.++++| +++|
T Consensus       320 ~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f-~~~D  397 (485)
T d2f2aa1         320 NLSRFDGIRYGYHSK-EAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVF-ENYD  397 (485)
T ss_dssp             HTTTCSSSSSSCCCS-SCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHT-TTCS
T ss_pred             HHHHhhhhhhccccc-cccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-ccCC
Confidence            998887766655443 55677888877777889999999988887666555556778888899999999999999 7999


Q ss_pred             EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133        251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES  330 (342)
Q Consensus       251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~  330 (342)
                      +||+|+++.+||++++.... . ...+....||.++|++|+|+++||+|+ .+|+|+||||+|++|+|+.||++|++||+
T Consensus       398 ~ll~Pt~~~~a~~~~~~~~~-~-~~~~~~~~~t~~~Nl~G~PaisvP~G~-~dGlPvGlQiig~~~~D~~LL~~A~~~E~  474 (485)
T d2f2aa1         398 VVVGPTAPTTAFNLGEEIDD-P-LTMYANDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQFIGKPFDEKTLYRVAYQYET  474 (485)
T ss_dssp             EEEEESSSSSCCBTTTSTTC-H-HHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCCcccccCC-H-HHHhhhhHHHHHHHHHCCCeEEEECCC-CCCCCEeEEEECCCCCHHHHHHHHHHHHh
Confidence            99999999999998764311 1 111123348999999999999999997 78999999999999999999999999999


Q ss_pred             hcCCCcccc
Q psy10133        331 QVEFNIEKL  339 (342)
Q Consensus       331 ~~~~~~~~~  339 (342)
                      +++|+...+
T Consensus       475 ~~~~~~~~p  483 (485)
T d2f2aa1         475 QYNLHDVYE  483 (485)
T ss_dssp             HSCCTTTGG
T ss_pred             hCCCCcCCC
Confidence            999987654
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure