Psyllid ID: psy10137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-----
Protein Sequence
MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDAN
Secondary Structure (PSIPRED)
cccccccccccccccEEEEccccccccHHHHHcccccccccccccccccccHHHcccccccccccccccccccEEEEEEEcccccccccccccccccccEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHcccccEEEEEEEEccccHHHHHHHHHHHHHHHcHHHHcccEEccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHcHcccccHHHHHHEEccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHEEccccEEccccccccEccccEEcHHHHHHHHHHHcccccHcccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccc
Coil and Loop (DISEMBL)
mqtvshqenpgrdfpvtmGVNAFRGFMNEFMnsrggsieaekprsgkakrtkerkkdkkasrkQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVcqncrhtchrkcytrimgecglarssaarshghrvfgvplsqlsssdgkvpslVDRLITTIELRGiytegiyrksgihSKIQELKTkidegklpelelEVYSVHILANLLKLFLRempeplltfEYYEEFLRAADLTEDRVSTLFSILktlpkpnfdLMERLIFHLARVAYheeanrmtpnslaivfapcilrqrhfpaqdalsdiSRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQirsskpkpfpqiHSKIQELKTkidegklpelelEVYSVHILANLLKLFLRempeplltfEYYEEFLRAADLTEDRVSTLFSILktlpkpnfdLMERLIFHLARVAYheeanrmtpnSLAIVFAQELKTkidegklpeseLAIHSKIQELKTkidegklpelelEVYSVHILANLLKLFLRempeplltfEYYEEFLRAADLTEDRVSTLFSILktlpkpnfdLMERLIFHLARVAYheeanrmtpnsldan
Flexible Loop (DISEMBL)
mqtvshqenpgrdfpvtMGVNAFRGFMNEFMNsrggsieaekprsgkakrtkerkkdkkasrkqedrivylgheleskiiniPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGvplsqlsssdgkvpSLVDRLITtielrgiytegiyrksgihsKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILktlpkpnfDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANtrirqirsskpkpfpqiHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILktlpkpnfDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIdegklpeseLAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILktlpkpnfDLMERLIFHLARVAyheeanrmtpnsldan
Low Complexity Region (SEG)
MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGkakrtkerkkdkkasrkQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDAN
Disordered region (IsUnstruct)
****************TMGVNAFRGFM***************************************RIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAA**HGHRVFGVPL*********VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLD*************************************GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI**********AIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYH**************
Disordered Region (DISOPRED)
****************TMGVNAFRGFMN*********************************************ELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM*******************GVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDI*******************************************************************KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANR**P******
Disordered Region (DISEMBL)
*********PGRDFPVTMGVNAFRGFMNEFMNSRGG****************************EDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDAN
Disordered Region (DISPRO)
***********RDFPVTMGVNAFRGFMNEFMNSRG**********************************YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	625	2.2.26 [Sep-21-2011]
B2RTY4	2548	Unconventional myosin-IXa	yes	N/A	0.526	0.129	0.390	5e-63
Q8C170	2542	Unconventional myosin-IXa	no	N/A	0.534	0.131	0.389	1e-62
Q9Z1N3	2626	Unconventional myosin-IXa	yes	N/A	0.512	0.121	0.403	3e-61
Q13459	2157	Unconventional myosin-IXb	no	N/A	0.484	0.140	0.354	4e-54
Q9QY06	2114	Unconventional myosin-IXb	no	N/A	0.414	0.122	0.386	3e-52
Q63358	1980	Unconventional myosin-IXb	no	N/A	0.414	0.130	0.382	4e-52
Q17QN0	334	N-chimaerin OS=Bos taurus	no	N/A	0.392	0.733	0.305	2e-30
P15882	459	N-chimaerin OS=Homo sapie	no	N/A	0.392	0.533	0.305	4e-30
P30337	334	N-chimaerin OS=Rattus nor	no	N/A	0.392	0.733	0.298	9e-30
Q91V57	459	N-chimaerin OS=Mus muscul	no	N/A	0.392	0.533	0.298	1e-29

>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2

 Score =  243 bits (619), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 217/371 (58%), Gaps = 42/371 (11%)

Query: 15   PVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIV--YLG 72
            PV + VN F+ F++E+MN         + ++     TK  K ++K  RK+E  +V  + G
Sbjct: 1949 PVRVWVNTFKVFLDEYMN---------EFKTSDCTATKVPKTERKKRRKKETDLVEEHNG 1999

Query: 73   HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
            H  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C         S
Sbjct: 2000 HIFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSS 2058

Query: 133  HGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
               R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D 
Sbjct: 2059 ---RQFGVELSRLTSEDRTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDT 2115

Query: 193  GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDR--VSTLFSIL 250
                 + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E +  +  ++S++
Sbjct: 2116 DA-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVI 2174

Query: 251  KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
              L + + + +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR               
Sbjct: 2175 DQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILR--------------- 2219

Query: 311  QTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANT 370
               C +     Q      ++ DIS+ T C+ELI+ EQ+ K    LKDI  L+ A + A T
Sbjct: 2220 ---CPDTTDPLQ------SVQDISKTTTCVELIVVEQMNKYKARLKDISSLEFAENKAKT 2270

Query: 371  RIRQIRSSKPK 381
            R+  IR S  K
Sbjct: 2271 RLSLIRRSMGK 2281

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.
Homo sapiens (taxid: 9606)

>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 219/375 (58%), Gaps = 41/375 (10%)

Query: 12   RDF---PVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRI 68
            RD+   PV + VN F+ F++E+MN    ++++  P+  K +R K RKK+     +     
Sbjct: 1945 RDWNESPVRVWVNTFKVFLDEYMNE-FKTLDSTAPKVLKTERKKRRKKETDLVEEHN--- 2000

Query: 69   VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSS 128
               GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C      
Sbjct: 2001 ---GHIFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDP 2056

Query: 129  AARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKT 188
               S   R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+ 
Sbjct: 2057 ELSS---RQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQ 2113

Query: 189  KIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDR--VSTL 246
             +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E +  +  +
Sbjct: 2114 GLDTD-AESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGV 2172

Query: 247  FSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
            +S++  L + + + +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR           
Sbjct: 2173 YSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILR----------- 2221

Query: 307  DISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARH 366
                   C +     Q      ++ DIS+ T C+ELI+ EQ+ K    LKDI  L+ A +
Sbjct: 2222 -------CPDTTDPLQ------SVQDISKTTTCVELIVVEQMNKYKARLKDISSLEFAEN 2268

Query: 367  SANTRIRQIRSSKPK 381
             A TR+  IR S  K
Sbjct: 2269 KAKTRLSLIRRSMGK 2283

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Mus musculus (taxid: 10090)

>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1

 Score =  236 bits (603), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/337 (40%), Positives = 208/337 (61%), Gaps = 17/337 (5%)

Query: 2    QTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKAS 61
            +T+  ++    + PV + VN F+ F++E+MN    ++++  P+  K +R K RKK+    
Sbjct: 2004 KTMRFEQRDWNESPVRVWVNTFKVFLDEYMNE-FKTLDSTAPKVLKTERKKRRKKETDLV 2062

Query: 62   RKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
             +        GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +
Sbjct: 2063 EEHN------GHMFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAK 2115

Query: 122  CGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHS 181
            C         S   R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +
Sbjct: 2116 CSKKYDPELSS---RQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTN 2172

Query: 182  KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 241
            KI+EL+  +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E 
Sbjct: 2173 KIKELRQGLDTD-AESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQER 2231

Query: 242  R--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QR 297
            +  +  ++S++  L + +   +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR    
Sbjct: 2232 KETIRGVYSVIDQLSRTHLSTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDT 2291

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDIS 334
              P Q ++ DIS+ T C+ELI+ EQ+ K    L DIS
Sbjct: 2292 TDPLQ-SVQDISKTTTCVELIVVEQMNKYKARLKDIS 2327

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho by stimulating it's GTPase activity in neurons, has a role in the regulation of neuronal morphology and function.

Rattus norvegicus (taxid: 10116)

>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3

 Score =  213 bits (542), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 199/322 (61%), Gaps = 19/322 (5%)

Query: 20   VNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKI 79
            +N F+  ++EF  +RG +    +P     K++K +KK +K  R  ++   + GH   S  
Sbjct: 1589 LNLFQSLLDEF--TRGYTKNDFEP----VKQSKAQKKKRKQERAVQE---HNGHVFASYQ 1639

Query: 80   INIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA---RSSAARSHGHR 136
            ++IP +CE C S + W +++ L+C  C+ TCH+KC  +I   C      +       GH 
Sbjct: 1640 VSIPQSCEQCLS-YIWLMDKALLCSVCKMTCHKKCVHKIQSHCSYTYGRKGEPGVEPGH- 1697

Query: 137  VFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP 196
             FGV +  L+S    VP ++++L+  +E+ G+YTEG+YRKSG  ++ +EL+  + +    
Sbjct: 1698 -FGVCVDSLTSDKASVPIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQAL-QTDPA 1755

Query: 197  ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLP 254
             ++LE + +H +  +LK +LRE+PEPL+TF  Y +FLRA +L E  ++++ ++++L+ LP
Sbjct: 1756 AVKLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLAAIYAVLEHLP 1815

Query: 255  KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDALSDISRQTL 313
            + N + +ERLIFHL +VA  E+ NRM+P +LAI+FAPC+LR   +     ++ D+ + T 
Sbjct: 1816 EANHNSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCLLRCPDNSDPLTSMKDVLKITT 1875

Query: 314  CIELIISEQLKKLADALSDISR 335
            C+E++I EQ++K    + +IS+
Sbjct: 1876 CVEMLIKEQMRKYKVKMEEISQ 1897

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Homo sapiens (taxid: 9606)

>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2

 Score =  207 bits (526), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 171/269 (63%), Gaps = 10/269 (3%)

Query: 72   GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC---GLARSS 128
            GH   S  +NIP +CE C S + W +++ L+C  C+ TCH+KC  +I   C   G  +S 
Sbjct: 1590 GHVFASYQVNIPQSCEQCLS-YIWLMDKALLCSVCKMTCHKKCVHKIQSYCSYTGRRKSE 1648

Query: 129  AARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKT 188
                 GH  FGV +  L+S    VP ++++L+  +E+ G+YTEG+YRKSG  ++ +EL+ 
Sbjct: 1649 LGAEPGH--FGVCVDSLTSDKASVPIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQ 1706

Query: 189  KIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTL 246
             + +     ++LE + +H +  +LK +LRE+PEPL+TF  Y +FLRA +L E  +++S +
Sbjct: 1707 AL-QTDPAAVKLEDFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLSAI 1765

Query: 247  FSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDAL 305
            +++L  LP+ N   +ERLIFHL +VA  E+ NRM+P +LAI+FAPC+LR   +     ++
Sbjct: 1766 YAVLDHLPEANHTSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCLLRCPDNSDPLTSM 1825

Query: 306  SDISRQTLCIELIISEQLKKLADALSDIS 334
             D+ + T C+E++I EQ++K    + +I+
Sbjct: 1826 KDVLKITTCVEMLIKEQMRKYKMKMEEIN 1854

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Mus musculus (taxid: 10090)

>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1

 Score =  206 bits (525), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 171/269 (63%), Gaps = 10/269 (3%)

Query: 72   GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC---GLARSS 128
            GH   S  +NIP +CE C S + W +++ L+C  C+ TCH+KC  +I   C   G  +S 
Sbjct: 1592 GHVFASYQVNIPQSCEQCLS-YIWLMDKALLCSVCKMTCHKKCVHKIQSYCSYTGRRKSE 1650

Query: 129  AARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKT 188
                 GH  FGV +  L+S    VP ++++L+  +E+ G+YTEG+YRKSG  ++ +EL+ 
Sbjct: 1651 LGAEPGH--FGVCVDSLTSDKASVPIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQ 1708

Query: 189  KIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTL 246
             + +     ++LE + +H +  +LK +LRE+PEPL+TF  Y +FLRA +L E  ++++ +
Sbjct: 1709 AL-QTDPATVKLEDFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLAAI 1767

Query: 247  FSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDAL 305
            +++L  LP+ N   +ERLIFHL +VA  E+ NRM+P +LAI+FAPC+LR   +     ++
Sbjct: 1768 YAVLDHLPEANHTSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCLLRCPDNSDPLTSM 1827

Query: 306  SDISRQTLCIELIISEQLKKLADALSDIS 334
             D+ + T C+E++I EQ++K    + +I+
Sbjct: 1828 KDVLKITTCVEMLIKEQMRKYKVKMEEIN 1856

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Rattus norvegicus (taxid: 10116)

>sp|Q17QN0|CHIN_BOVIN N-chimaerin OS=Bos taurus GN=CHN1 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
           H  +      P  CE C +     I + + C +C    H++C   +  +C          
Sbjct: 81  HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLK 135

Query: 133 HGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
           H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K   D
Sbjct: 136 HVKKVYSCDLTTLVKARTTKRPMVVDMCIREIEARGLNSEGLYRVSGFSDLIEDVKMAFD 195

Query: 192 -EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLF 247
            +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +  +++ TL 
Sbjct: 196 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH 255

Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307
             LK LP  + + +  L+ HL RV  HE+ N M   +L IVF P ++R     A  AL+D
Sbjct: 256 EALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALND 315

Query: 308 ISRQTLCIELIISEQ 322
           I  Q L +EL+I  +
Sbjct: 316 IRYQRLVVELLIKNE 330

GTPase-activating protein for p21-rac and a phorbol ester receptor. Involved in the assembly of neuronal locomotor circuits as a direct effector of EPHA4 in axon guidance.

Bos taurus (taxid: 9913)

>sp|P15882|CHIN_HUMAN N-chimaerin OS=Homo sapiens GN=CHN1 PE=1 SV=3

 Score =  133 bits (335), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
           H  +      P  CE C +     I + + C +C    H++C   +  +C          
Sbjct: 206 HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLK 260

Query: 133 HGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
           H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K   D
Sbjct: 261 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 320

Query: 192 -EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLF 247
            +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +  +++ TL 
Sbjct: 321 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH 380

Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307
             LK LP  + + +  L+ HL RV  HE+ N M   +L IVF P ++R     A  AL+D
Sbjct: 381 EALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALND 440

Query: 308 ISRQTLCIELIISEQ 322
           I  Q L +EL+I  +
Sbjct: 441 IRYQRLVVELLIKNE 455

GTPase-activating protein for p21-rac and a phorbol ester receptor. Involved in the assembly of neuronal locomotor circuits as a direct effector of EPHA4 in axon guidance.

Homo sapiens (taxid: 9606)

>sp|P30337|CHIN_RAT N-chimaerin OS=Rattus norvegicus GN=Chn1 PE=2 SV=2

 Score =  132 bits (332), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
           H  +      P  CE C +     I + + C +C    H++C   +  +C          
Sbjct: 81  HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLK 135

Query: 133 HGHRVFGVPLSQLSSSD-GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
           H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K   D
Sbjct: 136 HVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 195

Query: 192 -EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLF 247
            +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +  +++ TL 
Sbjct: 196 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIVDPDEQLETLH 255

Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307
             L++LP  + + +  L+ HL RV  HE+ N M+  +L IVF P ++R        AL+D
Sbjct: 256 EALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALND 315

Query: 308 ISRQTLCIELIISEQ 322
           I  Q L +EL+I  +
Sbjct: 316 IRYQRLVVELLIKNE 330

GTPase-activating protein for p21-rac and a phorbol ester receptor. Involved in the assembly of neuronal locomotor circuits as a direct effector of EPHA4 in axon guidance.

Rattus norvegicus (taxid: 10116)

>sp|Q91V57|CHIN_MOUSE N-chimaerin OS=Mus musculus GN=Chn1 PE=1 SV=2

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
           H  +      P  CE C +     I + + C +C    H++C   +  +C          
Sbjct: 206 HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLK 260

Query: 133 HGHRVFGVPLSQLSSSD-GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
           H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K   D
Sbjct: 261 HVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 320

Query: 192 -EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLF 247
            +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +  +++ TL 
Sbjct: 321 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH 380

Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307
             L++LP  + + +  L+ HL RV  HE+ N M+  +L IVF P ++R        AL+D
Sbjct: 381 EALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALND 440

Query: 308 ISRQTLCIELIISEQ 322
           I  Q L +EL+I  +
Sbjct: 441 IRYQRLVVELLIKNE 455

GTPase-activating protein for p21-rac and a phorbol ester receptor. May play an important role in neuronal signal-transduction mechanisms (By similarity). Involved in the assembly of neuronal locomotor circuits as a direct effector of EPHA4 in axon guidance.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	625
307214947	2177	Myosin-IXb [Harpegnathos saltator]	0.550	0.158	0.549	1e-110
328785348	2183	PREDICTED: myosin-IXa [Apis mellifera]	0.548	0.157	0.544	1e-109
380020084	2290	PREDICTED: LOW QUALITY PROTEIN: unconven	0.548	0.149	0.544	1e-109
383855596	2288	PREDICTED: unconventional myosin-IXa-lik	0.550	0.150	0.541	1e-109
350414458	2176	PREDICTED: myosin-IXa-like [Bombus impat	0.548	0.157	0.539	1e-109
345485984	2155	PREDICTED: myosin-IXa [Nasonia vitripenn	0.553	0.160	0.562	1e-109
340715385	2139	PREDICTED: LOW QUALITY PROTEIN: myosin-I	0.548	0.160	0.539	1e-109
332022806	2287	Myosin-IXa [Acromyrmex echinatior]	0.550	0.150	0.539	1e-107
322797024	2118	hypothetical protein SINV_09798 [Solenop	0.550	0.162	0.544	1e-107
307173524	2287	Myosin-IXa [Camponotus floridanus]	0.550	0.150	0.541	1e-107

>gi|307214947|gb|EFN89792.1| Myosin-IXb [Harpegnathos saltator]

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/382 (54%), Positives = 265/382 (69%), Gaps = 38/382 (9%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P         + K+ K+ 
Sbjct: 1715 METVCKQENTREDFPVTMGVNAFRGFMNEFMTI----VKTEAPEK-----HSKSKRKKEK 1765

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RKQE+ I +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCYT+ + 
Sbjct: 1766 KRKQEEPIRHGSHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYTKAVA 1825

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG    S + ++  +VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1826 ECG-KEGSLSETNPRKVFGVPLYKLDCGDGKVPLVVDRLITTIEMHGLYTEGIYRKSGVS 1884

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLT+EYY++FL AA+LT+
Sbjct: 1885 SKVRELKMKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTYEYYDDFLHAANLTD 1944

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 1945 PHDRISTLFAILKKLPKPNFDLMERLIVHLARVARHEVDNRMSPSALAIVFAPCILRTNR 2004

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2005 TLPAQDSLQDVGRQTRCVETI-------------------------VQEKLRVVRATLAD 2039

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2040 INTLESACHTATHRLSSLRSSK 2061

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785348|ref|XP_003250584.1| PREDICTED: myosin-IXa [Apis mellifera]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/382 (54%), Positives = 259/382 (67%), Gaps = 39/382 (10%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P      + K     K+ 
Sbjct: 1712 METVCKQENTSEDFPVTMGVNAFRGFMNEFMTL----VKTEAPEKQSKSKRK-----KEK 1762

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RK E+   +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCY +   
Sbjct: 1763 KRKHEEPTRHGNHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYMKASA 1822

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG  + +    + H+VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1823 ECG--KEALHEMNSHKVFGVPLYKLDCGDGKVPIVVDRLITTIEMHGLYTEGIYRKSGVS 1880

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L  ++ E Y VH+LA +LK F R+MPEPLLTFEYY++FL AA+LT+
Sbjct: 1881 SKVKELKLKMDEGDLEGVDFENYQVHVLAAVLKSFFRDMPEPLLTFEYYDDFLHAANLTD 1940

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 1941 PRDRISTLFAILKKLPKPNFDLMERLIVHLARVALHEVDNRMSPSALAIVFAPCILRTNR 2000

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2001 TLPAQDSLQDVGRQTCCVETI-------------------------VQEKLRVVRATLAD 2035

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2036 INTLESACHTATHRLSSLRSSK 2057

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020084|ref|XP_003693926.1| PREDICTED: LOW QUALITY PROTEIN: unconventional myosin-IXa-like [Apis florea]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/382 (54%), Positives = 259/382 (67%), Gaps = 39/382 (10%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P      + K     K+ 
Sbjct: 1819 METVCKQENTSEDFPVTMGVNAFRGFMNEFMTL----VKTEAPEKQSKSKRK-----KEK 1869

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RK E+   +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCY +   
Sbjct: 1870 KRKHEEPTRHGNHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYMKASA 1929

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG  + +    + H+VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1930 ECG--KEALHEMNSHKVFGVPLYKLDCGDGKVPIVVDRLITTIEMHGLYTEGIYRKSGVS 1987

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L  ++ E Y VH+LA +LK F R+MPEPLLTFEYY++FL AA+LT+
Sbjct: 1988 SKVKELKLKMDEGDLEGVDFENYQVHVLAAVLKSFFRDMPEPLLTFEYYDDFLHAANLTD 2047

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 2048 PRDRISTLFAILKKLPKPNFDLMERLIVHLARVALHEVDNRMSPSALAIVFAPCILRTNR 2107

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2108 TLPAQDSLQDVGRQTCCVETI-------------------------VQEKLRVVRATLAD 2142

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2143 INTLESACHTATHRLSSLRSSK 2164

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855596|ref|XP_003703296.1| PREDICTED: unconventional myosin-IXa-like [Megachile rotundata]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/382 (54%), Positives = 261/382 (68%), Gaps = 38/382 (9%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P      + K+ KK K+ 
Sbjct: 1826 METVCKQENTTEDFPVTMGVNAFRGFMNEFMTL----VKTEAPEKQSKSKRKKEKKRKQE 1881

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
               +     +  H  +  +INIPTACE+C S F WPIER LVCQNC+ TCH+KCY ++  
Sbjct: 1882 EPTR-----HGNHMFQLTMINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYMKVSA 1936

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG   +S    + H+VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1937 ECG-KDASLHEMNSHKVFGVPLYKLDCGDGKVPVVVDRLITTIEMHGLYTEGIYRKSGVS 1995

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLTFEYY++FL AA+LT+
Sbjct: 1996 SKVKELKLKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTFEYYDDFLHAANLTD 2055

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 2056 PRDRISTLFAILKKLPKPNFDLMERLIVHLARVALHEVDNRMSPSALAIVFAPCILRTNR 2115

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2116 ALPAQDSLQDVGRQTCCVETI-------------------------VQEKLRVVRATLAD 2150

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2151 INTLESACHTATHRLSSLRSSK 2172

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414458|ref|XP_003490324.1| PREDICTED: myosin-IXa-like [Bombus impatiens]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/382 (53%), Positives = 261/382 (68%), Gaps = 39/382 (10%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            ++TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P      + K     K+ 
Sbjct: 1714 IETVCKQENTSEDFPVTMGVNAFRGFMNEFMTL----VKTEAPEKQSKSKRK-----KEK 1764

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RK E+ I +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCY +   
Sbjct: 1765 KRKHEEPIRHGNHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYIKASA 1824

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG  + ++   +  ++FGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1825 ECG--KEASHEMNSRKIFGVPLYKLDCGDGKVPIVVDRLITTIEMHGLYTEGIYRKSGVS 1882

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLTFEYY++FL AA+LT+
Sbjct: 1883 SKVKELKVKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTFEYYDDFLHAANLTD 1942

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 1943 PRDRISTLFAILKKLPKPNFDLMERLIVHLARVALHEVDNRMSPSALAIVFAPCILRTNR 2002

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2003 TLPAQDSLQDVGRQTCCVETI-------------------------VQEKLRVVRATLAD 2037

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2038 INTLESACHTATYRLSSLRSSK 2059

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485984|ref|XP_001605165.2| PREDICTED: myosin-IXa [Nasonia vitripennis]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/382 (56%), Positives = 264/382 (69%), Gaps = 36/382 (9%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFP+TMGVNAFRGFMNEFM          K  + + +   +RKK+KK 
Sbjct: 1688 METVCKQENLKEDFPLTMGVNAFRGFMNEFM-------ALAKTEAMEKQSKSKRKKEKKE 1740

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RKQE+ I +  H  +  IINIPTACE+C S F WPIER L+CQNC+ TCH+KCYTR   
Sbjct: 1741 KRKQEEPIKHGNHMFQLTIINIPTACEVCTSFFMWPIERGLICQNCKLTCHKKCYTRASA 1800

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG        ++  +VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1801 ECG-KDGVPHDANSRKVFGVPLYKLDCGDGKVPLVVDRLITTIEMHGLYTEGIYRKSGVS 1859

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELKTK+DEG L +++ E Y VH+LA +LK F R+MPEPLLTFEYY++FL AA LTE
Sbjct: 1860 SKVKELKTKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTFEYYDDFLHAASLTE 1919

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 1920 PQDRISTLFAILKKLPKPNFDLMERLIVHLARVALHEVDNRMSPSALAIVFAPCILRTNR 1979

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 1980 SLPAQDSLQDVGRQTKCVETI-------------------------VHEKLRIVKTTLAD 2014

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ LD+A HSA  R+  +RSSK
Sbjct: 2015 INTLDSACHSATHRLSSLRSSK 2036

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715385|ref|XP_003396195.1| PREDICTED: LOW QUALITY PROTEIN: myosin-IXa-like [Bombus terrestris]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/382 (53%), Positives = 260/382 (68%), Gaps = 39/382 (10%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            ++TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P      + K     K+ 
Sbjct: 1677 IETVCKQENTSEDFPVTMGVNAFRGFMNEFMTL----VKTEAPEKQSKSKRK-----KEK 1727

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RK E+ I +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCY +   
Sbjct: 1728 KRKHEEPIRHGNHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYIKASA 1787

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG  + +    +  ++FGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1788 ECG--KEALHEMNSRKIFGVPLYKLDCGDGKVPIVVDRLITTIEMHGLYTEGIYRKSGVS 1845

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLTFEYY++FL AA+LT+
Sbjct: 1846 SKVKELKVKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTFEYYDDFLHAANLTD 1905

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPNFDLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 1906 PRDRISTLFAILKKLPKPNFDLMERLIVHLARVALHEVDNRMSPSALAIVFAPCILRTNR 1965

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 1966 TLPAQDSLQDVGRQTCCVETI-------------------------VQEKLRVVRATLAD 2000

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2001 INTLESACHTATYRLSSLRSSK 2022

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022806|gb|EGI63079.1| Myosin-IXa [Acromyrmex echinatior]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/382 (53%), Positives = 258/382 (67%), Gaps = 38/382 (9%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM      ++ E P      + K+ KK K+ 
Sbjct: 1824 METVCKQENTREDFPVTMGVNAFRGFMNEFM----AMVKTEAPEKQSKSKRKKEKKRKQE 1879

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
                   I +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCY +   
Sbjct: 1880 EP-----IRHGSHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYMKASA 1934

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG    S    +  +VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1935 ECG-KDGSLPEMNSRKVFGVPLYKLDCGDGKVPLVVDRLITTIEMHGLYTEGIYRKSGVS 1993

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLT+EYY++FL AA+LT+
Sbjct: 1994 SKVRELKMKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTYEYYDDFLHAANLTD 2053

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPN+DLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 2054 PHDRISTLFAILKKLPKPNYDLMERLIVHLARVARHEVDNRMSPSALAIVFAPCILRTNR 2113

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2114 TLPAQDSLQDVGRQTRCVETI-------------------------VQEKLRVVRATLAD 2148

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2149 INTLESACHTATHRLSSLRSSK 2170

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797024|gb|EFZ19338.1| hypothetical protein SINV_09798 [Solenopsis invicta]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/382 (54%), Positives = 263/382 (68%), Gaps = 38/382 (9%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM      I+ E       ++  + K+ K+ 
Sbjct: 1709 METVCKQENTREDFPVTMGVNAFRGFMNEFM----AMIKTEA-----LEKQSKSKRKKEK 1759

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RKQE+ I +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCY +   
Sbjct: 1760 KRKQEEPIRHGSHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYMKASA 1819

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG    S   ++  +VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1820 ECG-KDGSLPETNSRKVFGVPLYKLDCGDGKVPLVVDRLITTIEMHGLYTEGIYRKSGVS 1878

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLT+EYY++FL AA+LT+
Sbjct: 1879 SKVRELKMKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTYEYYDDFLHAANLTD 1938

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPN+DLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 1939 PHDRISTLFAILKKLPKPNYDLMERLIVHLARVARHEVDNRMSPSALAIVFAPCILRTNR 1998

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 1999 MLPAQDSLQDVGRQTRCVETI-------------------------VQEKLRVVRATLAD 2033

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2034 INTLESACHTATHRLSSLRSSK 2055

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173524|gb|EFN64434.1| Myosin-IXa [Camponotus floridanus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/382 (54%), Positives = 262/382 (68%), Gaps = 38/382 (9%)

Query: 1    MQTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGKAKRTKERKKDKKA 60
            M+TV  QEN   DFPVTMGVNAFRGFMNEFM            ++   ++  + K+ K+ 
Sbjct: 1824 METVCKQENTREDFPVTMGVNAFRGFMNEFMTI---------VKTEALEKQSKSKRKKEK 1874

Query: 61   SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
             RKQE+ I +  H  +  IINIPTACE+C S F WPIER LVCQNC+ TCH+KCYT+   
Sbjct: 1875 KRKQEEPIRHGNHMFQLTIINIPTACEVCTSFFMWPIERGLVCQNCKLTCHKKCYTKASS 1934

Query: 121  ECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
            ECG    S   ++  +VFGVPL +L   DGKVP +VDRLITTIE+ G+YTEGIYRKSG+ 
Sbjct: 1935 ECG-KDGSLLETNSRKVFGVPLYKLDCGDGKVPLVVDRLITTIEMHGLYTEGIYRKSGVS 1993

Query: 181  SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 240
            SK++ELK K+DEG L +++ E Y VH+LA +LK F R+MPEPLLT+EYY++FL AA LT+
Sbjct: 1994 SKVRELKMKMDEGDLEKVDFENYQVHVLAAVLKSFFRDMPEPLLTYEYYDDFLHAASLTD 2053

Query: 241  --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QR 297
              DR+STLF+ILK LPKPN+DLMERLI HLARVA HE  NRM+P++LAIVFAPCILR  R
Sbjct: 2054 PHDRISTLFAILKKLPKPNYDLMERLIVHLARVARHEVDNRMSPSALAIVFAPCILRTNR 2113

Query: 298  HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
              PAQD+L D+ RQT C+E I                         + E+L+ +  TL D
Sbjct: 2114 TLPAQDSLQDVGRQTRCVETI-------------------------VHEKLRVVRATLAD 2148

Query: 358  IDDLDTARHSANTRIRQIRSSK 379
            I+ L++A H+A  R+  +RSSK
Sbjct: 2149 INTLESACHTATHRLSSLRSSK 2170

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	625
UNIPROTKB|H3BV44	1398	MYO9A "Unconventional myosin-I	0.489	0.218	0.403	1.5e-65
MGI|MGI:107735	2542	Myo9a "myosin IXa" [Mus muscul	0.512	0.125	0.388	2.2e-65
UNIPROTKB|H3BRD5	2396	MYO9A "Unconventional myosin-I	0.489	0.127	0.403	1e-64
UNIPROTKB|B2RTY4	2548	MYO9A "Unconventional myosin-I	0.489	0.120	0.403	1.2e-64
ZFIN|ZDB-GENE-080424-5	2522	myo9al1 "myosin IXa-like 1" [D	0.512	0.126	0.376	3.3e-62
UNIPROTKB|J9P187	2560	MYO9A "Uncharacterized protein	0.411	0.100	0.445	7.1e-58
UNIPROTKB|E2RNI0	2628	MYO9A "Uncharacterized protein	0.411	0.097	0.445	7.9e-58
RGD|621395	2626	Myo9a "myosin IXA" [Rattus nor	0.628	0.149	0.344	2.4e-57
UNIPROTKB|Q9Z1N3	2626	Myo9a "Unconventional myosin-I	0.628	0.149	0.344	2.4e-57
UNIPROTKB|E1BR51	2628	Gga.54670 "Uncharacterized pro	0.721	0.171	0.340	2.5e-57

UNIPROTKB|H3BV44 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
 Identities = 131/325 (40%), Positives = 194/325 (59%)

Query:    15 PVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXXXXQEDRIV-YLGH 73
             PV + VN F+ F++E+MN        E   S                  + D +  + GH
Sbjct:   799 PVRVWVNTFKVFLDEYMN--------EFKTSDCTATKVPKTERKKRRKKETDLVEEHNGH 850

Query:    74 ELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSH 133
               ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C         S 
Sbjct:   851 IFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSS- 908

Query:   134 GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG 193
               R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D  
Sbjct:   909 --RQFGVELSRLTSEDRTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTD 966

Query:   194 KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILK 251
                 + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E  + +  ++S++ 
Sbjct:   967 A-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVID 1025

Query:   252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSDIS 309
              L + + + +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR      P Q ++ DIS
Sbjct:  1026 QLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTTDPLQ-SVQDIS 1084

Query:   310 RQTLCIELIISEQLKKLADALSDIS 334
             + T C+ELI+ EQ+ K    L DIS
Sbjct:  1085 KTTTCVELIVVEQMNKYKARLKDIS 1109

GO:0005622 "intracellular" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:107735 Myo9a "myosin IXa" [Mus musculus (taxid:10090)]

 Score = 600 (216.3 bits), Expect = 2.2e-65, Sum P(2) = 2.2e-65
 Identities = 131/337 (38%), Positives = 202/337 (59%)

Query:     2 QTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXX 61
             +T+  ++    + PV + VN F+ F++E+MN    ++++  P+                 
Sbjct:  1938 KTMRLEQRDWNESPVRVWVNTFKVFLDEYMNEFK-TLDSTAPK--VLKTERKKRRKKETD 1994

Query:    62 XXQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
               +E      GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +
Sbjct:  1995 LVEEHN----GHIFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAK 2049

Query:   122 CGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHS 181
             C         S   R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +
Sbjct:  2050 CSKKYDPELSS---RQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTN 2106

Query:   182 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 240
             KI+EL+  +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E 
Sbjct:  2107 KIKELRQGLDTDA-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQER 2165

Query:   241 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QR 297
              + +  ++S++  L + + + +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR    
Sbjct:  2166 KETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDT 2225

Query:   298 HFPAQDALSDISRQTLCIELIISEQLKKLADALSDIS 334
               P Q ++ DIS+ T C+ELI+ EQ+ K    L DIS
Sbjct:  2226 TDPLQ-SVQDISKTTTCVELIVVEQMNKYKARLKDIS 2261

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H3BRD5 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
 Identities = 131/325 (40%), Positives = 194/325 (59%)

Query:    15 PVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXXXXQEDRIV-YLGH 73
             PV + VN F+ F++E+MN        E   S                  + D +  + GH
Sbjct:  1949 PVRVWVNTFKVFLDEYMN--------EFKTSDCTATKVPKTERKKRRKKETDLVEEHNGH 2000

Query:    74 ELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSH 133
               ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C         S 
Sbjct:  2001 IFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSS- 2058

Query:   134 GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG 193
               R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D  
Sbjct:  2059 --RQFGVELSRLTSEDRTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTD 2116

Query:   194 KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILK 251
                 + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E  + +  ++S++ 
Sbjct:  2117 A-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVID 2175

Query:   252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSDIS 309
              L + + + +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR      P Q ++ DIS
Sbjct:  2176 QLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTTDPLQ-SVQDIS 2234

Query:   310 RQTLCIELIISEQLKKLADALSDIS 334
             + T C+ELI+ EQ+ K    L DIS
Sbjct:  2235 KTTTCVELIVVEQMNKYKARLKDIS 2259

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B2RTY4 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
 Identities = 131/325 (40%), Positives = 194/325 (59%)

Query:    15 PVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXXXXQEDRIV-YLGH 73
             PV + VN F+ F++E+MN        E   S                  + D +  + GH
Sbjct:  1949 PVRVWVNTFKVFLDEYMN--------EFKTSDCTATKVPKTERKKRRKKETDLVEEHNGH 2000

Query:    74 ELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSH 133
               ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C         S 
Sbjct:  2001 IFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSS- 2058

Query:   134 GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG 193
               R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D  
Sbjct:  2059 --RQFGVELSRLTSEDRTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTD 2116

Query:   194 KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILK 251
                 + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E  + +  ++S++ 
Sbjct:  2117 A-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVID 2175

Query:   252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSDIS 309
              L + + + +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR      P Q ++ DIS
Sbjct:  2176 QLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTTDPLQ-SVQDIS 2234

Query:   310 RQTLCIELIISEQLKKLADALSDIS 334
             + T C+ELI+ EQ+ K    L DIS
Sbjct:  2235 KTTTCVELIVVEQMNKYKARLKDIS 2259

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016461 "unconventional myosin complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007601 "visual perception" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

ZFIN|ZDB-GENE-080424-5 myo9al1 "myosin IXa-like 1" [Danio rerio (taxid:7955)]

 Score = 576 (207.8 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
 Identities = 127/337 (37%), Positives = 197/337 (58%)

Query:     2 QTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXX 61
             + +  ++    + PV + VN F+ F++EFM          KP                  
Sbjct:  1927 KNMRQEQRDWSESPVKVWVNTFKVFLDEFMTEH-------KPLDSSLGKAPKPDRKKRRK 1979

Query:    62 XXQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
                +    + GH  +S   +IPT CE C+SL  W +++  VC+ CR+ CHRKC  ++  +
Sbjct:  1980 KDTDVVEEHNGHIFKSTQYSIPTYCEYCSSLI-WMMDKACVCKLCRYACHRKCCQKMTTK 2038

Query:   122 CGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHS 181
             C         S   R FGV LS+L++ +  VP +V++L+  IE+ G+YTEGIYRKSG  +
Sbjct:  2039 CSKKYDPELSS---RQFGVELSRLTNDERTVPLVVEKLVNYIEMHGLYTEGIYRKSGSTN 2095

Query:   182 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 241
             KI+ELK  +D   +  + L+ Y+++++A++ K +LR++P PL+TFE YEEFLRA  L + 
Sbjct:  2096 KIKELKQGLDTD-VNGVNLDDYNINVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQDK 2154

Query:   242 R--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QR 297
             +  +  ++S++  L + + + +ERLIFHL R+A  EE NRM+ N+LAIVFAPCILR    
Sbjct:  2155 KEVIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDT 2214

Query:   298 HFPAQDALSDISRQTLCIELIISEQLKKLADALSDIS 334
               P + ++ DI + T C+ELII EQ+ K    L DI+
Sbjct:  2215 IDPLR-SVQDIGKTTACVELIICEQMNKYRARLKDIN 2250

GO:0016459 "myosin complex" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9P187 MYO9A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 578 (208.5 bits), Expect = 7.1e-58, Sum P(3) = 7.1e-58
 Identities = 119/267 (44%), Positives = 174/267 (65%)

Query:    72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAAR 131
             GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C         
Sbjct:  2011 GHIFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELS 2069

Query:   132 SHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
             S   R FGV LS+L+S +  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D
Sbjct:  2070 S---RQFGVELSRLTSEERTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLD 2126

Query:   192 EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSI 249
                   + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E  + +  ++S+
Sbjct:  2127 TDA-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSV 2185

Query:   250 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSD 307
             +  L + + + +ERLIFHL R+A  EE NRM+ N+LAIVFAPCILR      P Q ++ D
Sbjct:  2186 IDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTIDPLQ-SVQD 2244

Query:   308 ISRQTLCIELIISEQLKKLADALSDIS 334
             IS+ T C+ELI+ EQ+ K    L DIS
Sbjct:  2245 ISKTTTCVELIVVEQMNKYKARLKDIS 2271

GO:0046872 "metal ion binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|E2RNI0 MYO9A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 578 (208.5 bits), Expect = 7.9e-58, Sum P(3) = 7.9e-58
 Identities = 119/267 (44%), Positives = 174/267 (65%)

Query:    72 GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAAR 131
             GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +C         
Sbjct:  2079 GHIFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELS 2137

Query:   132 SHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
             S   R FGV LS+L+S +  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D
Sbjct:  2138 S---RQFGVELSRLTSEERTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLD 2194

Query:   192 EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSI 249
                   + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E  + +  ++S+
Sbjct:  2195 TDA-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSV 2253

Query:   250 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSD 307
             +  L + + + +ERLIFHL R+A  EE NRM+ N+LAIVFAPCILR      P Q ++ D
Sbjct:  2254 IDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTIDPLQ-SVQD 2312

Query:   308 ISRQTLCIELIISEQLKKLADALSDIS 334
             IS+ T C+ELI+ EQ+ K    L DIS
Sbjct:  2313 ISKTTTCVELIVVEQMNKYKARLKDIS 2339

GO:0046872 "metal ion binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

RGD|621395 Myo9a "myosin IXA" [Rattus norvegicus (taxid:10116)]

 Score = 606 (218.4 bits), Expect = 2.4e-57, P = 2.4e-57
 Identities = 143/415 (34%), Positives = 228/415 (54%)

Query:     2 QTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXX 61
             +T+  ++    + PV + VN F+ F++E+MN    ++++  P+                 
Sbjct:  2004 KTMRFEQRDWNESPVRVWVNTFKVFLDEYMNEFK-TLDSTAPK--VLKTERKKRRKKETD 2060

Query:    62 XXQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
               +E      GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +
Sbjct:  2061 LVEEHN----GHMFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAK 2115

Query:   122 CGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHS 181
             C         S   R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +
Sbjct:  2116 CSKKYDPELSS---RQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTN 2172

Query:   182 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 240
             KI+EL+  +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E 
Sbjct:  2173 KIKELRQGLDTDA-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQER 2231

Query:   241 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QR 297
              + +  ++S++  L + +   +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR    
Sbjct:  2232 KETIRGVYSVIDQLSRTHLSTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDT 2291

Query:   298 HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
               P Q ++ DIS+ T C+ELI+ EQ+ K    L DIS      E     +L  +  ++K 
Sbjct:  2292 TDPLQ-SVQDISKTTTCVELIVVEQMNKYKARLKDISSLEFA-ENKAKTRLSLIRRSMKP 2349

Query:   358 I----DDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELE 408
             +      +   R S + + R  R S P P   +  ++  +    +E    E  ++
Sbjct:  2350 VLIAVRFMSITRSSVSGKGRLHRGSHPNPSSPVIVRLPSMSDVPEETLTSETAMD 2404

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9Z1N3 Myo9a "Unconventional myosin-IXa" [Rattus norvegicus (taxid:10116)]

 Score = 606 (218.4 bits), Expect = 2.4e-57, P = 2.4e-57
 Identities = 143/415 (34%), Positives = 228/415 (54%)

Query:     2 QTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXX 61
             +T+  ++    + PV + VN F+ F++E+MN    ++++  P+                 
Sbjct:  2004 KTMRFEQRDWNESPVRVWVNTFKVFLDEYMNEFK-TLDSTAPK--VLKTERKKRRKKETD 2060

Query:    62 XXQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
               +E      GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +   +
Sbjct:  2061 LVEEHN----GHMFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTTAK 2115

Query:   122 CGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHS 181
             C         S   R FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +
Sbjct:  2116 CSKKYDPELSS---RQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTN 2172

Query:   182 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 240
             KI+EL+  +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E 
Sbjct:  2173 KIKELRQGLDTDA-ESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQER 2231

Query:   241 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QR 297
              + +  ++S++  L + +   +ERLIFHL R+A  E+ NRM+ N+LAIVFAPCILR    
Sbjct:  2232 KETIRGVYSVIDQLSRTHLSTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDT 2291

Query:   298 HFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKD 357
               P Q ++ DIS+ T C+ELI+ EQ+ K    L DIS      E     +L  +  ++K 
Sbjct:  2292 TDPLQ-SVQDISKTTTCVELIVVEQMNKYKARLKDISSLEFA-ENKAKTRLSLIRRSMKP 2349

Query:   358 I----DDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELE 408
             +      +   R S + + R  R S P P   +  ++  +    +E    E  ++
Sbjct:  2350 VLIAVRFMSITRSSVSGKGRLHRGSHPNPSSPVIVRLPSMSDVPEETLTSETAMD 2404

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E1BR51 Gga.54670 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 600 (216.3 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
 Identities = 168/494 (34%), Positives = 259/494 (52%)

Query:     2 QTVSHQENPGRDFPVTMGVNAFRGFMNEFMNSRGGSIEAEKPRSGXXXXXXXXXXXXXXX 61
             +T+  ++    + PV + VN F+ F++E+M      IE  KP                  
Sbjct:  2009 KTMRLEQRDWSESPVKVWVNTFKVFLDEYM------IEY-KPLD--YTAVKVPKTERKKR 2059

Query:    62 XXQEDRIV--YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
               +E  +V  + GH  ++   +IPT CE C+SL  W ++R  VC+ C++ CH+KC  +  
Sbjct:  2060 RKKEADVVEEHNGHIFKATQYSIPTYCEYCSSLI-WIMDRASVCKLCKYACHKKCCLKTT 2118

Query:   120 GECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGI 179
              +C         S   R FGV LS+L+S D  VP LV++LI  IE+ G+YTEGIYRKSG 
Sbjct:  2119 TKCSKKYDPELSS---RQFGVELSRLTSEDRAVPVLVEKLINYIEMHGLYTEGIYRKSGS 2175

Query:   180 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 239
              +KI+EL+  +D   +  + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L 
Sbjct:  2176 TNKIKELRQGLDTD-IDNVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQ 2234

Query:   240 EDR--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-- 295
             E R  V  ++S++  L + +   +ERLIFHL R+A  EE NRM+ N+LAIVFAPCILR  
Sbjct:  2235 ERRETVRGVYSVIDQLSRTHLSTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCP 2294

Query:   296 QRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTL 355
                 P Q ++ DIS+ T C+ELI+ EQ+ K    L DI+      E     +L  +  ++
Sbjct:  2295 DTTDPLQ-SVQDISKTTTCVELIVIEQMNKYKARLKDINSLEFA-ENKAKSRLSLIRRSM 2352

Query:   356 KDI----DDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPE--LELEV 409
             K +      +   R S   + R  R + P P   +  ++  +    +E    E  +EL+V
Sbjct:  2353 KPVLIAVRFMSITRSSIPGKGRVRRGTYPSPTSPVAMRLPSVSDVPEETVSSEEAMELDV 2412

Query:   410 ---------YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSI--LK 458
                          +L   ++   +E  E  LTFE      RA+D  ++ + +  SI    
Sbjct:  2413 TEQQQAAMQQEERVLTEQIESLQKEKEE--LTFEMLTLEPRASD--DETLESEASIGTAD 2468

Query:   459 TLPKPNFDLMERLI 472
             +    NFD  ER +
Sbjct:  2469 SSENLNFDSEERSV 2482

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	625
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	1e-75
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	8e-54
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	8e-52
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	1e-49
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	7e-49
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	5e-47
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	2e-40
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	1e-36
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	2e-36
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	7e-36
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	2e-35
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	1e-32
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	1e-32
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	4e-32
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	7e-32
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	1e-31
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	4e-31
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	1e-30
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	1e-30
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	4e-30
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	5e-30
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	2e-29
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	2e-29
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	7e-29
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	9e-28
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	1e-27
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	2e-27
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	4e-27
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	7e-27
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	9e-27
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	1e-26
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	1e-26
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	9e-26
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	1e-24
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	3e-24
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	4e-24
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	8e-24
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	2e-23
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	2e-22
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	5e-22
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	5e-22
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	1e-21
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	2e-21
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	3e-21
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	5e-21
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	5e-21
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	6e-21
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	8e-21
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	8e-21
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	9e-21
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	1e-19
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	4e-19
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	3e-18
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	4e-18
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	5e-18
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	8e-18
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	1e-17
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	1e-17
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	2e-17
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	6e-17
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	7e-17
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	8e-17
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	2e-16
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	3e-16
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	7e-16
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	7e-16
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	8e-16
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	3e-15
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	5e-15
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	1e-14
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	1e-14
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	1e-14
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	1e-14
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	1e-14
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	2e-14
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	2e-14
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	2e-13
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	3e-13
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	5e-13
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	7e-13
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	7e-13
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	7e-13
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	1e-12
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	1e-12
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	1e-12
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	2e-12
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	1e-11
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	2e-11
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	2e-11
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	2e-11
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	3e-11
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	4e-11
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	6e-11
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	7e-11
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	1e-10
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	2e-10
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	2e-10
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	3e-10
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	3e-10
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	4e-10
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	5e-10
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	9e-10
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	2e-09
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	2e-09
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	3e-09
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	9e-09
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	1e-08
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	3e-08
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	6e-08
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	6e-08
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	5e-07
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	7e-07
pfam00130	53	pfam00130, C1_1, Phorbol esters/diacylglycerol bin	2e-06
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	5e-06
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	1e-04
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	2e-04
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	6e-04
cd00029	50	cd00029, C1, Protein kinase C conserved region 1 (	0.001
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	0.004
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	0.004

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score =  238 bits (610), Expect = 1e-75
 Identities = 96/187 (51%), Positives = 132/187 (70%), Gaps = 4/187 (2%)

Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FGV LS L+S D  VP ++++L+  IE+ G+YTEGIYRKSG  +KI+EL+  +D      
Sbjct: 1   FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDP-DS 59

Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPK 255
           + LE Y +H++ ++LK +LRE+PEPL+TFE YE FLRA +L E  +RV  L+S+L+ LP+
Sbjct: 60  VNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPR 119

Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDALSDISRQTLC 314
            N + +ERLIFHL RVA  EE NRM+ N+LAIVFAPCILR         +L D+S+ T C
Sbjct: 120 ANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDTADPLQSLQDVSKTTTC 179

Query: 315 IELIISE 321
           +E +I E
Sbjct: 180 VETLIKE 186

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score =  181 bits (461), Expect = 8e-54
 Identities = 94/188 (50%), Positives = 133/188 (70%), Gaps = 6/188 (3%)

Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FGV LS+L+S D  VP +V++LI  IE+ G+YTEGIYRKSG  +KI+EL+  +D      
Sbjct: 1   FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDT-DANS 59

Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDR--VSTLFSILKTLPK 255
           + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E R  V  ++S++  L +
Sbjct: 60  VNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSR 119

Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR--QRHFPAQDALSDISRQTL 313
            + + +ERLIFHL R+A  EE NRM+ N+LAIVFAPCILR      P Q ++ DIS+ T 
Sbjct: 120 THLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTTDPLQ-SVQDISKTTT 178

Query: 314 CIELIISE 321
           C+ELI+ E
Sbjct: 179 CVELIVCE 186

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  175 bits (445), Expect = 8e-52
 Identities = 72/152 (47%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
           P +V++ +  +E RG+ TEGI+R SG  S+I+EL+   D G+  +L+LE   VH++A+LL
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 213 KLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLAR 270
           KLFLRE+PEPLLTFE YEEF+ AA     E+RV  L  +L+ LP  N D +  L+ HL R
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120

Query: 271 VAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ 302
           VA + E N+M  ++LAIVF P +LR     + 
Sbjct: 121 VAQNSEVNKMNAHNLAIVFGPTLLRPPDDESD 152

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  170 bits (432), Expect = 1e-49
 Identities = 79/173 (45%), Positives = 107/173 (61%), Gaps = 3/173 (1%)

Query: 152 VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL 211
           +P +V++ I  +E RG+ TEGIYR SG  S+++EL+   D G  P+L+L  Y VH +A L
Sbjct: 3   IPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGL 62

Query: 212 LKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILKTLPKPNFDLMERLIFHLA 269
           LKLFLRE+PEPL+T+E YEEF+ AA L ++  R+  L  +L  LP  N   +  L+ HL 
Sbjct: 63  LKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHLN 122

Query: 270 RVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
           RVA H E N+MT  +LAIVF P +LR        +L DI  Q   IE +I   
Sbjct: 123 RVAEHSEENKMTARNLAIVFGPTLLRPP-DGEVASLKDIRHQNTVIEFLIENA 174

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score =  168 bits (426), Expect = 7e-49
 Identities = 82/188 (43%), Positives = 129/188 (68%), Gaps = 6/188 (3%)

Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FGV +  L+S+   VP ++++L+  +E+ G+YTEGIYRKSG  ++++EL   +     PE
Sbjct: 1   FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQAD--PE 58

Query: 198 -LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLP 254
            ++LE Y +H +  LLK +LRE+PEPL+TF  Y +FLRA +L E  +++  ++ +L+ LP
Sbjct: 59  NVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLP 118

Query: 255 KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQDALSDISRQTL 313
             N + +ERLIFHL +VA  E+ NRM+PN+LAIVFAPC+LR         ++ D+++ T 
Sbjct: 119 TANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPDSSDPLTSMKDVAKTTT 178

Query: 314 CIELIISE 321
           C+E++I E
Sbjct: 179 CVEMLIKE 186

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  162 bits (413), Expect = 5e-47
 Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 4/171 (2%)

Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
           P ++++ I  +E  G+ TEGI+R SG  SKI+ELK K D G+    +LE Y VH +A+LL
Sbjct: 1   PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDI-DDLEDYDVHDVASLL 59

Query: 213 KLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLAR 270
           KL+LRE+PEPL+ FE Y+EF+  A +   E+R+  L  +LK+LP  N DL++ L+  L +
Sbjct: 60  KLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHK 119

Query: 271 VAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISE 321
           ++ + E N+MT ++LAIVFAP +LR       + L DI +    +E +I  
Sbjct: 120 ISQNSEVNKMTASNLAIVFAPTLLRPPD-SDDELLEDIKKLNEIVEFLIEN 169

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score =  145 bits (367), Expect = 2e-40
 Identities = 59/112 (52%), Positives = 82/112 (73%), Gaps = 3/112 (2%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           +KI+EL+  +D      + LE Y +H++ ++LK +LRE+PEPL+TFE YE FLRA +L E
Sbjct: 44  NKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEE 102

Query: 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
             +RV  L+S+L+ LP+ N + +ERLIFHL RVA  EE NRM+ N+LAIVFA
Sbjct: 103 KQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFA 154

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score =  134 bits (340), Expect = 1e-36
 Identities = 54/107 (50%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
           +KI+EL+  +D      + LE Y +H++ ++LK +LRE+PEPL+TFE YE FLRA +L E
Sbjct: 44  NKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEE 102

Query: 578 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             +RV  L+S+L+ LP+ N + +ERLIFHL RVA  EE NRM+ N+L
Sbjct: 103 KQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANAL 149

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score =  134 bits (339), Expect = 2e-36
 Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 11/189 (5%)

Query: 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE--GK 194
           FGVPL  L   +G  VP++V + I  IE  G+  EGIYR SG  S++ +LK   D+    
Sbjct: 1   FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLN 60

Query: 195 LPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSIL 250
           +  +  E Y   +H +A+LLKLF RE+PEPLLT     EF+ AA + ++  R   L  ++
Sbjct: 61  VLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI 120

Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
             LP  N+  +  L+FHLAR+  HE  NRM+ N+LAI++ P ++      A D  +D+S 
Sbjct: 121 NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNA----APDNAADMSF 176

Query: 311 QTLCIELII 319
           Q+  IE ++
Sbjct: 177 QSRVIETLL 185

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  131 bits (332), Expect = 7e-36
 Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           S+I+EL+   D G+  +L+LE   VH++A+LLKLFLRE+PEPLLTFE YEEF+ AA    
Sbjct: 29  SRIKELREAFDSGEDVDLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEFIEAAKSED 88

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            E+RV  L  +L+ LP  N D +  L+ HL RVA + E N+M  ++LAIVF 
Sbjct: 89  EEERVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNAHNLAIVFG 140

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score =  131 bits (332), Expect = 2e-35
 Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 4/162 (2%)

Query: 138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID-EGKL 195
           FG  L  L   +   VP  V   I  +E RG+  +GIYR SG  + IQ+L+  +D + KL
Sbjct: 1   FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKL 60

Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTL 253
              + +   +H++   LKLF RE+PEPL  +  + +F+ A  L++   RVS +  ++K+L
Sbjct: 61  DLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSL 120

Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
           PKPN D ++ L  HL RV  H E NRMT  +LAIVF P +LR
Sbjct: 121 PKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLR 162

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score =  124 bits (312), Expect = 1e-32
 Identities = 69/194 (35%), Positives = 113/194 (58%), Gaps = 11/194 (5%)

Query: 136 RVFGVPLSQLSSSDGK-VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           RVFG  L++   + G+ VP ++      IE  GI   GIYR SGI S IQ L+ + D  +
Sbjct: 1   RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVD-GIYRLSGIASNIQRLRHEFDSEQ 59

Query: 195 LPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA--ADLTEDRVSTLFSIL 250
           +P+L  +VY   +H +++L KL+ RE+P PLLT++ YE+F  A  A   E+R+  +  ++
Sbjct: 60  IPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI 119

Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH-----FPAQDAL 305
           + LP P++  +E L+ HL+R+A +     M   +LAIV+AP +LR +      F    A 
Sbjct: 120 QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAF 179

Query: 306 SDISRQTLCIELII 319
            ++  Q++ +E I+
Sbjct: 180 MEVRIQSVVVEFIL 193

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score =  123 bits (312), Expect = 1e-32
 Identities = 61/189 (32%), Positives = 108/189 (57%), Gaps = 7/189 (3%)

Query: 138 FGVPLSQL---SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGV L  L   +     +P +V   +  ++   + TEGI+R+S     ++E++ K + G 
Sbjct: 6   FGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG- 64

Query: 195 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRVSTLFSILKTL 253
            P    +   VH+ A +LK FLRE+PEPLLTF+ Y++ +   ++  E+RV  +  +L+TL
Sbjct: 65  EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTL 124

Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTL 313
           P+ N+ +++ LI  L +V+ H + N+MT ++LA+VF P +L  +   A  +LS I+    
Sbjct: 125 PEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK--DASMSLSAINPINT 182

Query: 314 CIELIISEQ 322
             + ++  Q
Sbjct: 183 FTKFLLDHQ 191

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  121 bits (305), Expect = 4e-32
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           S+I+EL+   D G+  +L+LE   VH++A+LLKLFLRE+PEPLLTFE YEEF+ AA    
Sbjct: 29  SRIKELREAFDSGEDVDLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEFIEAAKSED 88

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E+RV  L  +L+ LP  N D +  L+ HL RVA + E N+M  ++L
Sbjct: 89  EEERVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNAHNL 135

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score =  121 bits (306), Expect = 7e-32
 Identities = 60/188 (31%), Positives = 112/188 (59%), Gaps = 5/188 (2%)

Query: 138 FGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID-EGKL 195
           +G  L+ L  + + + P +VD  I  IE RG+ +EG+YR SG   +I+++K   D +G+ 
Sbjct: 1   YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEK 60

Query: 196 PELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKT 252
            ++   VY  ++++   LKL+ R++P P++T++ Y +F+ AA ++  ++R+  +   L  
Sbjct: 61  ADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALML 120

Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQT 312
           LP  +++ +  L+ HL RV  HE+ N+M   +L IVF P ++R     A   L+D+  Q 
Sbjct: 121 LPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSALTTLNDMRYQI 180

Query: 313 LCIELIIS 320
           L ++L+I+
Sbjct: 181 LIVQLLIT 188

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score =  121 bits (305), Expect = 1e-31
 Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 10/191 (5%)

Query: 137 VFGVPLSQ--LSSSDGKVPSLVDRLITTIELRGIYTEGIYR----KSGIHSKIQELKTKI 190
            FGVPL     SS +  VP +V+     +E RG+ T GIYR     + I +  +EL    
Sbjct: 1   TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGG 60

Query: 191 DEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFS 248
            +  L +       V+++++LLK F R++PEPL T E Y +F+ A  + +  +R+  L  
Sbjct: 61  FDIDLQDPRWR--DVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRR 118

Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDI 308
           ++ +LP  +++ ++ LI HL  VA + E N+M P +LAIVF P ++R      +  ++ +
Sbjct: 119 LIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNMETMVTHM 178

Query: 309 SRQTLCIELII 319
             Q   +E +I
Sbjct: 179 PDQCKIVETLI 189

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  118 bits (299), Expect = 4e-31
 Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 2/112 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           S+++EL+   D G  P+L+L  Y VH +A LLKLFLRE+PEPL+T+E YEEF+ AA L +
Sbjct: 32  SRVKELRDAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYELYEEFIEAAKLED 91

Query: 448 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           +  R+  L  +L  LP  N   +  L+ HL RVA H E N+MT  +LAIVF 
Sbjct: 92  ETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFG 143

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score =  119 bits (299), Expect = 1e-30
 Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 23/204 (11%)

Query: 138 FGVPLSQL--SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
           FGV  SQ+     D  VP ++ +  + IE R +  +GIYR SG  +++++L    + GK 
Sbjct: 1   FGVDFSQVPRDFPDE-VPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGK- 58

Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL-------------RAADLTEDR 242
             +EL   S H ++++LKLFLR++PEPL+ F  Y +F+             +A +   + 
Sbjct: 59  DLVELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEV 118

Query: 243 VSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHF 299
              +  +   L+ LP  N++ ++ LI HL RVA   E N+M+PN+L IVF P ++R R  
Sbjct: 119 NRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPG 178

Query: 300 PAQ---DALSDISRQTLCIELIIS 320
            A     +L D   Q   +E +I+
Sbjct: 179 DADVSLSSLVDYGYQARLVEFLIT 202

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score =  118 bits (297), Expect = 1e-30
 Identities = 56/166 (33%), Positives = 98/166 (59%), Gaps = 19/166 (11%)

Query: 142 LSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL---------KTKIDE 192
           L     +D  +P +VD+ I  I   G+ +EGIYRK+G +S +++L           ++ E
Sbjct: 5   LEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLRE 64

Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSIL 250
           G+        Y+VH +A++LK FLR++P+PLLT E + E++ AA+L   ++R++    ++
Sbjct: 65  GE--------YTVHDVADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELI 116

Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQ 296
           + LP  N   ++ LI HL RV  H + N+M+ ++LA+VF P + + 
Sbjct: 117 RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQT 162

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  115 bits (291), Expect = 4e-30
 Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           SKI+ELK K D G+    +LE Y VH +A+LLKL+LRE+PEPL+ FE Y+EF+  A +  
Sbjct: 29  SKIEELKKKFDRGEDI-DDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIED 87

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKID 505
            E+R+  L  +LK+LP  N DL++ L+  L +++ + E N+MT ++LAIVFA  L    D
Sbjct: 88  EEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPD 147

Query: 506 EGKLPESELAIHSKI 520
                  ++   ++I
Sbjct: 148 SDDELLEDIKKLNEI 162

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score =  116 bits (293), Expect = 5e-30
 Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 6/192 (3%)

Query: 136 RVFGVPLSQ-LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
            VFG PL + L  +  ++   ++  +  +   G+  EG++R  G  SK++ LK  +D G 
Sbjct: 3   PVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGT 62

Query: 195 L-PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILK 251
               L+      H +A+ LK +LRE+P+PLLT+  YE++++AA+  ++  R+  ++ IL 
Sbjct: 63  FSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILN 122

Query: 252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL--RQRHFPAQDALSDIS 309
            LP+ N D +  LI  L+++A   + N+M+P+++AIV AP +L  +     A+ A     
Sbjct: 123 KLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSV 182

Query: 310 RQTLCIELIISE 321
                +ELIIS 
Sbjct: 183 HVVAIVELIISH 194

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score =  115 bits (289), Expect = 2e-29
 Identities = 59/178 (33%), Positives = 103/178 (57%), Gaps = 16/178 (8%)

Query: 154 SLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL------KTKIDEGKLPELELEVYSVHI 207
             V + I  +E RGI  +G+YR  G++SK+Q+L            G + +L+   + +  
Sbjct: 30  KFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDV-DLDNSEWEIKT 88

Query: 208 LANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVSTLFSILKTLPKPNFDLMERLI 265
           + + LK +LR +PEPL+T+E + +F+ AA  +  E RV+ + S++  LP+ N +++E LI
Sbjct: 89  ITSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLI 148

Query: 266 FHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD---ALSDISRQTLCIELIIS 320
            HL  V+ H + N MT ++L +VF P +LR    P ++   A+ DI  Q + +E++I 
Sbjct: 149 KHLTNVSDHSKKNLMTVSNLGVVFGPTLLR----PQEETVAAIMDIKFQNIVVEILIE 202

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score =  114 bits (288), Expect = 2e-29
 Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 10/187 (5%)

Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FG PLS +   D  +P  +  +++ +  +G  TEGI+R+S      +ELK K++ G   E
Sbjct: 2   FGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGV--E 58

Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVSTLFSILKTLPK 255
           ++L+   V +LA++LK FLR +P  LL+ + YEE++ A D    E++++ L  +L  LP+
Sbjct: 59  VDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPR 118

Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL--SDISRQTL 313
           PN  L++ LI  L  ++ + E N+M   +LA+  AP +L     PA   L   D+ + T 
Sbjct: 119 PNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLL---WPPASSELQNEDLKKVTS 175

Query: 314 CIELIIS 320
            ++ +I 
Sbjct: 176 LVQFLIE 182

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score =  113 bits (284), Expect = 7e-29
 Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 3/184 (1%)

Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FGVPL+ + +S+  +P  +++ +  IE  G+ TEGIYR SG  + +  L+ + D+    +
Sbjct: 1   FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLD 60

Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILKTLPK 255
           L  + ++V+ +A  LK F  E+P+PL+ +  + E + AA + +   R+  L  +LK  P 
Sbjct: 61  LVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPP 120

Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCI 315
            NFD+ + +I HL +V+ + + N MT  +L+I F P ++R   F + +ALS        I
Sbjct: 121 ENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRP-DFTSMEALSATRIYQTII 179

Query: 316 ELII 319
           E  I
Sbjct: 180 ETFI 183

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  109 bits (275), Expect = 9e-28
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
           S+++EL+   D G  P+L+L  Y VH +A LLKLFLRE+PEPL+T+E YEEF+ AA L +
Sbjct: 32  SRVKELRDAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYELYEEFIEAAKLED 91

Query: 578 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           +  R+  L  +L  LP  N   +  L+ HL RVA H E N+MT  +L
Sbjct: 92  ETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNL 138

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score =  110 bits (277), Expect = 1e-27
 Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 31/211 (14%)

Query: 138 FGVPLSQ--LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
           FG   +Q    S DG +P ++ +  + IE R +  +GIYR +G  S++++L    + GK 
Sbjct: 1   FGADFAQVAKKSPDG-IPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGK- 58

Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA------------------- 236
             +EL   S H ++N+LKL+LR++PEPL+ F  Y EF+  A                   
Sbjct: 59  DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKK 118

Query: 237 --DLTEDRVSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291
             ++  +    L      L+ LP PN++ ++ LI HL RV+   E N+M+ ++L I+F P
Sbjct: 119 WPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGP 178

Query: 292 CILRQRHFPAQDALS---DISRQTLCIELII 319
            ++R R   A  +LS   D   Q   +EL+I
Sbjct: 179 TLIRPRPTDATVSLSSLVDYPHQARLVELLI 209

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score =  108 bits (273), Expect = 2e-27
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 137 VFGVPLSQ---LSS---SDGKVPSLVDRLITTIE-LRGIYTEGIYRKSGIHSKIQELKTK 189
           +FG PL +   LSS   +   +PS+V R I  ++  R IY EGI+R SG  S I++LK +
Sbjct: 1   IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKER 60

Query: 190 IDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLF 247
            +     +L        VH +A LLKL+LRE+P  +L  E + +F R  +   DR     
Sbjct: 61  FNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRAL 120

Query: 248 ---SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP 291
               ++  LP+ N+DL+  L   L ++  H + N+M   ++ IVF+P
Sbjct: 121 ELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSP 167

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score =  108 bits (270), Expect = 4e-27
 Identities = 52/113 (46%), Positives = 79/113 (69%), Gaps = 5/113 (4%)

Query: 388 SKIQELKTKIDEGKLPE-LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
           ++++EL   +     PE ++LE Y +H +  LLK +LRE+PEPL+TF  Y +FLRA +L 
Sbjct: 44  NRMKELHQLLQAD--PENVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELP 101

Query: 447 E--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           E  +++  ++ +L+ LP  N + +ERLIFHL +VA  E+ NRM+PN+LAIVFA
Sbjct: 102 EKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFA 154

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score =  107 bits (269), Expect = 7e-27
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID-EGKLPELELEVYSVHILA 209
           KVP +V + +  +E RG+   GIYR SG+ + IQ LK   D   K   + L    V+ +A
Sbjct: 15  KVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIA 74

Query: 210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVSTLFSILKTLPKPNFDLMERLIFH 267
             LKL+ RE+PEPL T E Y  F     L++   + S + ++L +LP PN      L+ H
Sbjct: 75  GTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHH 134

Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILR 295
           L RVA  EE N+M+ ++LA VF P +LR
Sbjct: 135 LKRVAEREEVNKMSLHNLATVFGPTLLR 162

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score =  107 bits (269), Expect = 9e-27
 Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 15/182 (8%)

Query: 137 VFGVPLSQLSSSD----GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
           VFGVPL  L  S     G VP  +    T +    + TEG++RKSG   + +ELK K++ 
Sbjct: 1   VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLDH-LSTEGLFRKSGSVVRQKELKAKLEG 59

Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKT 252
           G   E  L       +A LLK F RE+PEPLL ++ +E  L+A +L  D      ++L T
Sbjct: 60  G---EACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT 116

Query: 253 --LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
             LP  + + +      L  VA     N+M  ++LA++FAP +     F +++    +S 
Sbjct: 117 CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNL-----FQSEEGGEKMSS 171

Query: 311 QT 312
            T
Sbjct: 172 ST 173

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score =  107 bits (267), Expect = 1e-26
 Identities = 52/112 (46%), Positives = 79/112 (70%), Gaps = 3/112 (2%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           +KI+EL+  +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E
Sbjct: 44  NKIKELRQGLDT-DANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQE 102

Query: 448 DR--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            R  V  ++S++  L + + + +ERLIFHL R+A  EE NRM+ N+LAIVFA
Sbjct: 103 RRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFA 154

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  105 bits (265), Expect = 1e-26
 Identities = 49/107 (45%), Positives = 74/107 (69%), Gaps = 3/107 (2%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           SKI+ELK K D G+    +LE Y VH +A+LLKL+LRE+PEPL+ FE Y+EF+  A +  
Sbjct: 29  SKIEELKKKFDRGEDI-DDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIED 87

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E+R+  L  +LK+LP  N DL++ L+  L +++ + E N+MT ++L
Sbjct: 88  EEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNL 134

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score =  104 bits (262), Expect = 9e-26
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 4/157 (2%)

Query: 139 GVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
           G       S+   +P+L+   +  IE RG+  EG+YR SG   +++ LK K   GK    
Sbjct: 4   GELADFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPN 63

Query: 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKP 256
            L    +H++   LK FLR + EPL+TF  ++EF+ AA++   ++  + L+  +  LP+P
Sbjct: 64  -LSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQP 122

Query: 257 NFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293
           N D +  LI HL RVA      +M  N+LA VF P I
Sbjct: 123 NRDTLAFLILHLQRVA-QSPECKMDINNLARVFGPTI 158

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score =  101 bits (253), Expect = 1e-24
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 13/161 (8%)

Query: 151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN 210
           +VP LV+     +E  G+ T GI+R      ++++L+ + D G    L+ E +SVH +A 
Sbjct: 8   QVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAA 66

Query: 211 LLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRVSTLFSILKTLPKPNFDLMERLIFHLA 269
           LLK F R+MP+PLL  E Y  F+  A L  ++++  L  ++  LP  N D + RL+  L 
Sbjct: 67  LLKEFFRDMPDPLLPRELYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLH 126

Query: 270 RVAYHEE-----------ANRMTPNSLAIVFAPCILRQRHF 299
            VA H              N+MT  +LA +F P +L ++  
Sbjct: 127 TVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKS 167

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score =  100 bits (250), Expect = 3e-24
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 22/202 (10%)

Query: 138 FGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP 196
           FGV  SQL      +VP +V R    IE R +  +GIYR SG  +++++L    + G+  
Sbjct: 1   FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGR-D 59

Query: 197 ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--------------DLTEDR 242
            ++L  +S H + ++LK FL+E+PEP+L F+ Y++F+  A               + E+ 
Sbjct: 60  LVDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENI 119

Query: 243 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ 302
           + +L  +L  LP  N++ +  L+ HL RVA   E N+M+PN+L IVF P +LR       
Sbjct: 120 IRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRP--LVGG 177

Query: 303 D----ALSDISRQTLCIELIIS 320
           D     L D   Q   +E +IS
Sbjct: 178 DVSMICLLDTGYQAQLVEFLIS 199

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 99.4 bits (248), Expect = 4e-24
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 390 IQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 447
           IQ+L+  +D + KL   + +   +H++   LKLF RE+PEPL  +  + +F+ A  L++ 
Sbjct: 47  IQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDY 106

Query: 448 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506
             RVS +  ++K+LPKPN D ++ L  HL RV  H E NRMT  +LAIVF   L     E
Sbjct: 107 EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQE 166

Query: 507 GKLPESELAIHSKIQ 521
                  +A+H   Q
Sbjct: 167 ----TGNIAVHMVYQ 177

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 98.9 bits (246), Expect = 8e-24
 Identities = 47/108 (43%), Positives = 74/108 (68%), Gaps = 5/108 (4%)

Query: 518 SKIQELKTKIDEGKLPE-LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
           ++++EL   +     PE ++LE Y +H +  LLK +LRE+PEPL+TF  Y +FLRA +L 
Sbjct: 44  NRMKELHQLLQAD--PENVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELP 101

Query: 577 E--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           E  +++  ++ +L+ LP  N + +ERLIFHL +VA  E+ NRM+PN+L
Sbjct: 102 EKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNAL 149

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 97.8 bits (243), Expect = 2e-23
 Identities = 47/107 (43%), Positives = 74/107 (69%), Gaps = 3/107 (2%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
           +KI+EL+  +D      + L+ Y++H++A++ K +LR++P PL+TFE YEEFLRA  L E
Sbjct: 44  NKIKELRQGLDT-DANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQE 102

Query: 578 DR--VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            R  V  ++S++  L + + + +ERLIFHL R+A  EE NRM+ N+L
Sbjct: 103 RRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANAL 149

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 95.2 bits (237), Expect = 2e-22
 Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 12/189 (6%)

Query: 136 RVFGVPLSQLSSS---DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
           +VFGVPL +L  +   +  VP++V  ++  +E  G+  EG++R +G    ++ L+ ++D 
Sbjct: 1   KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDS 60

Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA-ADLTEDRV--STLFSI 249
           G+  +L  E   V   A+LL+LFL+E+PE L+        ++   D   +      L  +
Sbjct: 61  GEEVDLSKEA-DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDL 119

Query: 250 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDIS 309
           L+ LP  N+ L++ L   L+ VA     NRMT  +LA VF P +     F     + D+ 
Sbjct: 120 LQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDV-----FHVYTDVEDMK 174

Query: 310 RQTLCIELI 318
            Q +C  ++
Sbjct: 175 EQEICSRIM 183

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 94.4 bits (235), Expect = 5e-22
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 19/180 (10%)

Query: 138 FGVPLSQLSSSDG------------KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQE 185
           FGVPL  L    G            ++P+L+D +I+ +    +  EG++RK+G   +++E
Sbjct: 1   FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKE 60

Query: 186 LKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV 243
           L  +ID+      +L   +   LA LLK FLRE+P+PLLTF+ Y  ++ +  +   E+R 
Sbjct: 61  LTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERK 120

Query: 244 STLFSILKTLPKPNFDLMERLIFHLARVA-YH----EEANRMTPNSLAIVFAPCILRQRH 298
             L  +   LPK + D ME L   L  V+ +     E  ++M  ++LA V  P IL  + 
Sbjct: 121 RVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKT 180

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 93.6 bits (233), Expect = 5e-22
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 151 KVPSLVDRLITTI-ELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILA 209
           K+P ++  L   +  L G  TEGI+R  G   ++ ELK ++D+   P   LE    H+ A
Sbjct: 20  KLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLE--DPHVPA 77

Query: 210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLA 269
           +LLKL+LRE+ EPL+    Y++ + A++   D+      I++ LP  N  ++  LI  L 
Sbjct: 78  SLLKLWLRELEEPLIPDALYQQCISASE-DPDKA---VEIVQKLPIINRLVLCYLINFLQ 133

Query: 270 RVAYHE--EANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELII 319
             A  E     +M  ++LA+VFAP ILR      +    +  ++   +  +I
Sbjct: 134 VFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPRVIFENTRKEMSFLRTLI 185

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 93.3 bits (232), Expect = 1e-21
 Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 388 SKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
           SK++ LK  +D G     L+      H +A+ LK +LRE+P+PLLT+  YE++++AA+  
Sbjct: 49  SKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKP 108

Query: 447 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI 504
           ++  R+  ++ IL  LP+ N D +  LI  L+++A   + N+M+P+++AIV A  L    
Sbjct: 109 DEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAK 168

Query: 505 DEGKLPE 511
           +EG L E
Sbjct: 169 NEGSLAE 175

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 92.1 bits (229), Expect = 2e-21
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 5/148 (3%)

Query: 152 VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL 211
           VP LV++ +  I   G+  EG++R  G  + +++L+   D G+ P  + +   VH +A+L
Sbjct: 22  VPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDT-DVHTVASL 80

Query: 212 LKLFLREMPEPLLTFEYYEEFLRAADL----TEDRVSTLFSILKTLPKPNFDLMERLIFH 267
           LKL+LRE+PEP++ +  YE+FL  A L     E  +  L   +  LPK N++L+  +   
Sbjct: 81  LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRF 140

Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILR 295
           L  V  +   N+M+  +LA VF P ILR
Sbjct: 141 LDEVQSNSSVNKMSVQNLATVFGPNILR 168

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 2/115 (1%)

Query: 387 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
              ++E++ K + G  P    +   VH+ A +LK FLRE+PEPLLTF+ Y++ +   ++ 
Sbjct: 51  TQVVKEVQQKYNMG-EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVD 109

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            E+RV  +  +L+TLP+ N+ +++ LI  L +V+ H + N+MT ++LA+VF   L
Sbjct: 110 KEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNL 164

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 91.4 bits (227), Expect = 5e-21
 Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 21/180 (11%)

Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FG PL++   +       + +LI  +E + +  EG++RK G  ++ QEL+  ++ G   +
Sbjct: 1   FGAPLTEEGIAQ------IYQLIEYLE-KNLRVEGLFRKPGNSARQQELRDLLNSGTDLD 53

Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-------------EDR-V 243
           LE   +  H  A +LK FL E+PEPLLT  +Y   L+ ADL              ++R +
Sbjct: 54  LESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLL 113

Query: 244 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD 303
             L  +L  LP+ N +L++ ++  L + A HE+ N+M+ ++LA++F P ++  R+   +D
Sbjct: 114 EALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPED 173

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 91.3 bits (227), Expect = 5e-21
 Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 15/183 (8%)

Query: 137 VFGVPLSQLSSSDGK------VPSLVDRLITTIELRGIYTEGIYRKSGIHSKI----QEL 186
           +FGVPLS L   D K      VP +  +LI  +E RG+ TEGI R  G   ++    QEL
Sbjct: 1   LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQEL 60

Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVS 244
           + K  EG       +    H  A+LLKLF+RE+P+PLLT EY   F     L   +D++ 
Sbjct: 61  EAKFYEGTFL---WDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQ 117

Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA 304
            L  ++  LP+ N D ++ L+  L +V  HEE N+M   ++A++ AP +   R   ++D 
Sbjct: 118 ALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKDN 177

Query: 305 LSD 307
            S 
Sbjct: 178 ESL 180

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 90.2 bits (224), Expect = 6e-21
 Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 138 FGVPLSQLSSS----DG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
           FG  LS         DG  +P +    I  +E  G+  EGIY+ SGI SK+ ELK   + 
Sbjct: 1   FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNR 60

Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSIL 250
            + P LE   Y    +A+LLK +LRE+PEPLLT E    F  A       +R   L  +L
Sbjct: 61  RESPNLE--EYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL 118

Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293
           K LP+ N  L+  LI H+  V   E   +M   +++IV +P +
Sbjct: 119 KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 90.1 bits (224), Expect = 8e-21
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 520 IQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE- 577
           IQ+L+  +D + KL   + +   +H++   LKLF RE+PEPL  +  + +F+ A  L++ 
Sbjct: 47  IQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDY 106

Query: 578 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             RVS +  ++K+LPKPN D ++ L  HL RV  H E NRMT  +L
Sbjct: 107 EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNL 152

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 90.3 bits (224), Expect = 8e-21
 Identities = 44/119 (36%), Positives = 74/119 (62%), Gaps = 4/119 (3%)

Query: 386 IHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA- 442
           I S IQ L+ + D  ++P+L  +VY   +H +++L KL+ RE+P PLLT++ YE+F  A 
Sbjct: 44  IASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAV 103

Query: 443 -ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            A   E+R+  +  +++ LP P++  +E L+ HL+R+A +     M   +LAIV+A  L
Sbjct: 104 SAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNL 162

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 90.2 bits (224), Expect = 9e-21
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 6/115 (5%)

Query: 388 SKIQELKTKIDE--GKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
           S++ +LK   D+    +  +  E Y   +H +A+LLKLF RE+PEPLLT     EF+ AA
Sbjct: 45  SRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAA 104

Query: 444 DLTED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
            + ++  R   L  ++  LP  N+  +  L+FHLAR+  HE  NRM+ N+LAI++
Sbjct: 105 KIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 87.5 bits (217), Expect = 1e-19
 Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 138 FGVPLSQL---SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGVPLS+L         VP ++ + +  IE RG+   G+YR  G  +K +EL+   +   
Sbjct: 1   FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNS 60

Query: 195 LP-ELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVST---LF 247
              EL  E+Y  ++++  +LK +LRE+PEPL+T + YE  L A    L  D  +      
Sbjct: 61  AAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTL 120

Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
           SI+  LP      +  L+ HL+ V  + E N+MTP +LA+ F P ++      ++  +S
Sbjct: 121 SIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEFSRYGIS 179

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 85.5 bits (212), Expect = 4e-19
 Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 4/113 (3%)

Query: 386 IHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
           I +  +EL     +  L +       V+++++LLK F R++PEPL T E Y +F+ A  +
Sbjct: 49  ISALQEELNRGGFDIDLQDPRWR--DVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRI 106

Query: 446 TE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
            +  +R+  L  ++ +LP  +++ ++ LI HL  VA + E N+M P +LAIVF
Sbjct: 107 EDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 2/109 (1%)

Query: 515 AIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 574
           A    ++E++ K + G  P    +   VH+ A +LK FLRE+PEPLLTF+ Y++ +   +
Sbjct: 49  ANTQVVKEVQQKYNMG-EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLN 107

Query: 575 LT-EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           +  E+RV  +  +L+TLP+ N+ +++ LI  L +V+ H + N+MT ++L
Sbjct: 108 VDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNL 156

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 82.5 bits (204), Expect = 4e-18
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 518 SKIQELKTKIDE--GKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAA 573
           S++ +LK   D+    +  +  E Y   +H +A+LLKLF RE+PEPLLT     EF+ AA
Sbjct: 45  SRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAA 104

Query: 574 DLTED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            + ++  R   L  ++  LP  N+  +  L+FHLAR+  HE  NRM+ N+L
Sbjct: 105 KIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNL 155

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 392 ELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDR 449
           ELK K++ G   E++L+   V +LA++LK FLR +P  LL+ + YEE++ A D    E++
Sbjct: 48  ELKEKLNSGV--EVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEK 105

Query: 450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           ++ L  +L  LP+PN  L++ LI  L  ++ + E N+M   +LA+  A
Sbjct: 106 IAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIA 153

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 81.8 bits (202), Expect = 8e-18
 Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 4/111 (3%)

Query: 516 IHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA- 572
           I S IQ L+ + D  ++P+L  +VY   +H +++L KL+ RE+P PLLT++ YE+F  A 
Sbjct: 44  IASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAV 103

Query: 573 -ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            A   E+R+  +  +++ LP P++  +E L+ HL+R+A +     M   +L
Sbjct: 104 SAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNL 154

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 37/108 (34%), Positives = 68/108 (62%), Gaps = 3/108 (2%)

Query: 518 SKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
           SK++ LK  +D G     L+      H +A+ LK +LRE+P+PLLT+  YE++++AA+  
Sbjct: 49  SKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKP 108

Query: 577 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           ++  R+  ++ IL  LP+ N D +  LI  L+++A   + N+M+P+++
Sbjct: 109 DEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNI 156

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 137 VFGVPLS-QLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
           VFGVPL   L  +   +P  + + +  +    +   G++RKSG+ S+IQ+L++ I E   
Sbjct: 4   VFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMI-ESST 62

Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTL 253
             +  +    + +A++LK + R++PEPLLT +  E F+        E R+  +   +  L
Sbjct: 63  DNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLL 122

Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQT 312
           P  N ++++ L++ L+ VA + + N+MT  +LA+  AP +        +++      Q 
Sbjct: 123 PDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNTSRRENSSPARRMQR 181

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 16/111 (14%)

Query: 406 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL-------------RAADLTEDRVST 452
           EL   S H ++++LKLFLR++PEPL+ F  Y +F+             +A +   +    
Sbjct: 62  ELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRI 121

Query: 453 LFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
           +  +   L+ LP  N++ ++ LI HL RVA   E N+M+PN+L IVF   L
Sbjct: 122 IRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTL 172

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 79.8 bits (197), Expect = 6e-17
 Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 49/228 (21%)

Query: 137 VFGVPL--------SQLSSSD--------GKVPSLVDRLITTIELRGIYTEGIYRKSGIH 180
           VFGV L          +S  D        G +P +V +    ++      EGI+R +G  
Sbjct: 1   VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSS 60

Query: 181 SKIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR-- 234
            +I+EL+        P+     + + Y+VH  A++L+ +L  +PEPL+  + YEEF    
Sbjct: 61  KRIRELQLIFSTP--PDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPL 118

Query: 235 --------------AADLTED---RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEA 277
                            L  D    +     ++  LP  N  L+  L+  LA  A + + 
Sbjct: 119 RKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDK 178

Query: 278 NRMTPNSLAIVFAPCILRQRHFPAQDALSD---ISRQTLCIELIISEQ 322
           N MT ++LA +F P IL     P  +       +SR    +E +I  Q
Sbjct: 179 NLMTASNLAAIFQPGILSH---PDHEMDPKEYKLSRLV--VEFLIEHQ 221

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 522 ELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDR 579
           ELK K++ G   E++L+   V +LA++LK FLR +P  LL+ + YEE++ A D    E++
Sbjct: 48  ELKEKLNSGV--EVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEK 105

Query: 580 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           ++ L  +L  LP+PN  L++ LI  L  ++ + E N+M   +L
Sbjct: 106 IAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNL 148

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 79.0 bits (195), Expect = 8e-17
 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)

Query: 508 KLPESELAIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE 567
           ++P +  AI +  +EL     +  L +       V+++++LLK F R++PEPL T E Y 
Sbjct: 41  RVPGNNAAISALQEELNRGGFDIDLQDPRWR--DVNVVSSLLKSFFRKLPEPLFTNELYP 98

Query: 568 EFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           +F+ A  + +  +R+  L  ++ +LP  +++ ++ LI HL  VA + E N+M P +L
Sbjct: 99  DFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNL 155

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-E 447
           ++++L+ + D G    L+ E +SVH +A LLK F R+MP+PLL  E Y  F+  A L  +
Sbjct: 39  RVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALLEPD 97

Query: 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSLAIVF 496
           +++  L  ++  LP  N D + RL+  L  VA H              N+MT  +LA +F
Sbjct: 98  EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIF 157

Query: 497 AQELKTKIDEGKLPESELAIH 517
              L  K   G+    + ++ 
Sbjct: 158 GPNLLHKQKSGEREFVQASLR 178

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 9/121 (7%)

Query: 388 SKIQEL------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR 441
           SK+Q+L            G + +L+   + +  + + LK +LR +PEPL+T+E + +F+ 
Sbjct: 57  SKVQKLLSLGLDPKTSTPGDV-DLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFIN 115

Query: 442 AA--DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE 499
           AA  +  E RV+ + S++  LP+ N +++E LI HL  V+ H + N MT ++L +VF   
Sbjct: 116 AAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPT 175

Query: 500 L 500
           L
Sbjct: 176 L 176

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 76.0 bits (187), Expect = 7e-16
 Identities = 35/115 (30%), Positives = 69/115 (60%), Gaps = 4/115 (3%)

Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           I+++K   D +G+  ++   VY  ++++   LKL+ R++P P++T++ Y +F+ AA ++ 
Sbjct: 47  IEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISN 106

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            ++R+  +   L  LP  +++ +  L+ HL RV  HE+ N+M   +L IVF   L
Sbjct: 107 PDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTL 161

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 41/126 (32%), Positives = 74/126 (58%), Gaps = 19/126 (15%)

Query: 386 IHSKIQEL---------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYY 436
            +S +++L           ++ EG+        Y+VH +A++LK FLR++P+PLLT E +
Sbjct: 42  KNSSVKKLLEAFRKDARSVQLREGE--------YTVHDVADVLKRFLRDLPDPLLTSELH 93

Query: 437 EEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI 494
            E++ AA+L   ++R++    +++ LP  N   ++ LI HL RV  H + N+M+ ++LA+
Sbjct: 94  AEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLAL 153

Query: 495 VFAQEL 500
           VF   L
Sbjct: 154 VFGPTL 159

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 75.9 bits (187), Expect = 8e-16
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 388 SKIQELKTKIDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
           S I++LK + +     +L        VH +A LLKL+LRE+P  +L  E + +F R  + 
Sbjct: 52  SVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEE 111

Query: 446 TEDRVSTLF---SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
             DR         ++  LP+ N+DL+  L   L ++  H + N+M   ++ IVF+  L
Sbjct: 112 NHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTL 169

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 74.2 bits (182), Expect = 3e-15
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 388 SKIQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
           + IQ LK   D   K   + L    V+ +A  LKL+ RE+PEPL T E Y  F     L+
Sbjct: 45  TDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALS 104

Query: 447 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE-LKTK 503
           +   + S + ++L +LP PN      L+ HL RVA  EE N+M+ ++LA VF    L+  
Sbjct: 105 DPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPS 164

Query: 504 IDEGKLPESELAI 516
             E K+P + +  
Sbjct: 165 EKESKIPTNTMTD 177

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 74.0 bits (182), Expect = 5e-15
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 16/103 (15%)

Query: 536 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL-------------RAADLTEDRVST 582
           EL   S H ++++LKLFLR++PEPL+ F  Y +F+             +A +   +    
Sbjct: 62  ELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRI 121

Query: 583 LFSI---LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           +  +   L+ LP  N++ ++ LI HL RVA   E N+M+PN+L
Sbjct: 122 IRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNL 164

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 9/113 (7%)

Query: 518 SKIQEL------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR 571
           SK+Q+L            G + +L+   + +  + + LK +LR +PEPL+T+E + +F+ 
Sbjct: 57  SKVQKLLSLGLDPKTSTPGDV-DLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFIN 115

Query: 572 AA--DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           AA  +  E RV+ + S++  LP+ N +++E LI HL  V+ H + N MT ++L
Sbjct: 116 AAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNL 168

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 25/137 (18%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---- 443
           S++++L    + GK   +EL   S H ++N+LKL+LR++PEPL+ F  Y EF+  A    
Sbjct: 45  SRVEKLCQAFENGK-DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQ 103

Query: 444 -----------------DLTEDRVSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEE 483
                            ++  +    L      L+ LP PN++ ++ LI HL RV+   E
Sbjct: 104 HVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAE 163

Query: 484 ANRMTPNSLAIVFAQEL 500
            N+M+ ++L I+F   L
Sbjct: 164 ENKMSASNLGIIFGPTL 180

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448
           + +ELK K++ G   E  L       +A LLK F RE+PEPLL ++ +E  L+A +L  D
Sbjct: 49  RQKELKAKLEGG---EACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTD 105

Query: 449 RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506
                 ++L T  LP  + + +      L  VA     N+M  ++LA++FA  L    + 
Sbjct: 106 EERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG 165

Query: 507 G-KLPES 512
           G K+  S
Sbjct: 166 GEKMSSS 172

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 9/141 (6%)

Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---- 445
           +++L+   D G+ P  + +   VH +A+LLKL+LRE+PEP++ +  YE+FL  A L    
Sbjct: 53  VKQLQDAFDAGERPSFDSDT-DVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKD 111

Query: 446 TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE-LKTKI 504
            E  +  L   +  LPK N++L+  +   L  V  +   N+M+  +LA VF    L+ K+
Sbjct: 112 EEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKV 171

Query: 505 DEGKLPESELAIHSKIQELKT 525
           ++   P + +    +IQ+L T
Sbjct: 172 ED---PATIMEGTPQIQQLMT 189

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 17/143 (11%)

Query: 391 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT---- 446
           QEL+  ++ G   +LE   +  H  A +LK FL E+PEPLLT  +Y   L+ ADL     
Sbjct: 40  QELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDE 99

Query: 447 ---------EDR-VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
                    ++R +  L  +L  LP+ N +L++ ++  L + A HE+ N+M+ ++LA++F
Sbjct: 100 KGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLF 159

Query: 497 AQELKTKIDEGKLPESELAIHSK 519
              L   I    L   +L  +++
Sbjct: 160 TPHL---ICPRNLTPEDLHENAQ 179

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 446
           +++ LK K   GK     L    +H++   LK FLR + EPL+TF  ++EF+ AA++   
Sbjct: 47  EVKALKEKFLRGKTVPN-LSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDE 105

Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           ++  + L+  +  LP+PN D +  LI HL RVA      +M  N+LA VF 
Sbjct: 106 DNSRAALYQAISELPQPNRDTLAFLILHLQRVA-QSPECKMDINNLARVFG 155

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 5/158 (3%)

Query: 142 LSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELE 201
              +  S   +P +V+  I  I L G+  +GI+R SG   ++ ++K   + G+ P  + +
Sbjct: 8   EEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQ 67

Query: 202 VYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILKTLPKPN 257
               ++ +A +LKL+ R +  PL   E +E+ +      + TE RV  +  IL TLP+  
Sbjct: 68  NDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTE-RVHQIREILSTLPRSV 126

Query: 258 FDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
             +M  L   L  ++   + N M P +LAI F P ++ 
Sbjct: 127 IIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMP 164

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 518 SKIQELKTKIDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
           S I++LK + +     +L        VH +A LLKL+LRE+P  +L  E + +F R  + 
Sbjct: 52  SVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEE 111

Query: 576 TEDRVSTLF---SILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 618
             DR         ++  LP+ N+DL+  L   L ++  H + N+M 
Sbjct: 112 NHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMN 157

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 13/116 (11%)

Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-E 577
           ++++L+ + D G    L+ E +SVH +A LLK F R+MP+PLL  E Y  F+  A L  +
Sbjct: 39  RVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALLEPD 97

Query: 578 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSL 622
           +++  L  ++  LP  N D + RL+  L  VA H              N+MT  +L
Sbjct: 98  EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNL 153

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 67.5 bits (165), Expect = 5e-13
 Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           + +  L+ + D+    +L  + ++V+ +A  LK F  E+P+PL+ +  + E + AA + +
Sbjct: 44  THLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKIND 103

Query: 448 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
              R+  L  +LK  P  NFD+ + +I HL +V+ + + N MT  +L+I F
Sbjct: 104 REQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICF 154

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 19/119 (15%)

Query: 515 AIHSKIQEL---------KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEY 565
             +S +++L           ++ EG+        Y+VH +A++LK FLR++P+PLLT E 
Sbjct: 41  GKNSSVKKLLEAFRKDARSVQLREGE--------YTVHDVADVLKRFLRDLPDPLLTSEL 92

Query: 566 YEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           + E++ AA+L   ++R++    +++ LP  N   ++ LI HL RV  H + N+M+ ++L
Sbjct: 93  HAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNL 151

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 518 SKIQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
           + IQ LK   D   K   + L    V+ +A  LKL+ RE+PEPL T E Y  F     L+
Sbjct: 45  TDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALS 104

Query: 577 ED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           +   + S + ++L +LP PN      L+ HL RVA  EE N+M+ ++L
Sbjct: 105 DPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNL 152

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 14/124 (11%)

Query: 405 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--------------DLTEDRV 450
           ++L  +S H + ++LK FL+E+PEP+L F+ Y++F+  A               + E+ +
Sbjct: 61  VDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENII 120

Query: 451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP 510
            +L  +L  LP  N++ +  L+ HL RVA   E N+M+PN+L IVF   L   +  G + 
Sbjct: 121 RSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDVS 180

Query: 511 ESEL 514
              L
Sbjct: 181 MICL 184

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           I+++K   D +G+  ++   VY  ++++   LKL+ R++P P++T++ Y +F+ AA ++ 
Sbjct: 47  IEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISN 106

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            ++R+  +   L  LP  +++ +  L+ HL RV  HE+ N+M   +L
Sbjct: 107 PDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENL 153

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 14/116 (12%)

Query: 521 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT---- 576
           QEL+  ++ G   +LE   +  H  A +LK FL E+PEPLLT  +Y   L+ ADL     
Sbjct: 40  QELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDE 99

Query: 577 ---------EDR-VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
                    ++R +  L  +L  LP+ N +L++ ++  L + A HE+ N+M+ ++L
Sbjct: 100 KGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNL 155

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 384 PQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
             I SK+ ELK   +  + P LE   Y    +A+LLK +LRE+PEPLLT E    F  A 
Sbjct: 45  SGIKSKVDELKAAYNRRESPNLE--EYEPPTVASLLKQYLRELPEPLLTKELMPRFEEAC 102

Query: 444 DLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV 495
                 +R   L  +LK LP+ N  L+  LI H+  V   E   +M   +++IV
Sbjct: 103 GRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIV 156

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 25/129 (19%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---- 573
           S++++L    + GK   +EL   S H ++N+LKL+LR++PEPL+ F  Y EF+  A    
Sbjct: 45  SRVEKLCQAFENGK-DLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQ 103

Query: 574 -----------------DLTEDRVSTLFSI---LKTLPKPNFDLMERLIFHLARVAYHEE 613
                            ++  +    L      L+ LP PN++ ++ LI HL RV+   E
Sbjct: 104 HVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAE 163

Query: 614 ANRMTPNSL 622
            N+M+ ++L
Sbjct: 164 ENKMSASNL 172

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 520 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---- 575
           +++L+   D G+ P  + +   VH +A+LLKL+LRE+PEP++ +  YE+FL  A L    
Sbjct: 53  VKQLQDAFDAGERPSFDSDT-DVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKD 111

Query: 576 TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E  +  L   +  LPK N++L+  +   L  V  +   N+M+  +L
Sbjct: 112 EEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNL 158

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
           + +ELK K++ G   E  L       +A LLK F RE+PEPLL ++ +E  L+A +L  D
Sbjct: 49  RQKELKAKLEGG---EACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTD 105

Query: 579 RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
                 ++L T  LP  + + +      L  VA     N+M  ++L
Sbjct: 106 EERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNL 151

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 576
           +++ LK K   GK     L    +H++   LK FLR + EPL+TF  ++EF+ AA++   
Sbjct: 47  EVKALKEKFLRGKTVPN-LSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDE 105

Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           ++  + L+  +  LP+PN D +  LI HL RVA      +M  N+L
Sbjct: 106 DNSRAALYQAISELPQPNRDTLAFLILHLQRVA-QSPECKMDINNL 150

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 516 IHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
           I SK+ ELK   +  + P LE   Y    +A+LLK +LRE+PEPLLT E    F  A   
Sbjct: 47  IKSKVDELKAAYNRRESPNLE--EYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGR 104

Query: 576 TE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
               +R   L  +LK LP+ N  L+  LI H+  V   E   +M   ++
Sbjct: 105 PTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNI 153

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           S+IQ+L++ I E     +  +    + +A++LK + R++PEPLLT +  E F+       
Sbjct: 49  SRIQKLRSMI-ESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVP 107

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            E R+  +   +  LP  N ++++ L++ L+ VA + + N+MT  +LA+  A  L
Sbjct: 108 KEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSL 162

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 384 PQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
           P    ++ ELK ++D+   P   LE    H+ A+LLKL+LRE+ EPL+    Y++ + A+
Sbjct: 47  PGDIDEVNELKLRVDQWDYPLSGLE--DPHVPASLLKLWLRELEEPLIPDALYQQCISAS 104

Query: 444 DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSLAIVFA 497
           +   D+      I++ LP  N  ++  LI  L   A  E     +M  ++LA+VFA
Sbjct: 105 E-DPDKA---VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFA 156

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
           + +  L+ + D+    +L  + ++V+ +A  LK F  E+P+PL+ +  + E + AA + +
Sbjct: 44  THLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKIND 103

Query: 578 D--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
              R+  L  +LK  P  NFD+ + +I HL +V+ + + N MT  +L
Sbjct: 104 REQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENL 150

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 61.3 bits (149), Expect = 7e-11
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA-ADLTED 448
           ++ L+ ++D G+  +L  E   V   A+LL+LFL+E+PE L+        ++   D   +
Sbjct: 51  VEWLRQRLDSGEEVDLSKEA-DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGE 109

Query: 449 RV--STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF 496
                 L  +L+ LP  N+ L++ L   L+ VA     NRMT  +LA VF
Sbjct: 110 DEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 486 RMTPNSLAIVFAQELKTKIDEG--------KLPESELAIHSKIQELKTKIDEGKLPELEL 537
           +  P S   +  Q+L  K++E         ++P S   +    QEL+ K  EG       
Sbjct: 15  KKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFL---W 71

Query: 538 EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVSTLFSILKTLPKPNF 595
           +    H  A+LLKLF+RE+P+PLLT EY   F     L   +D++  L  ++  LP+ N 
Sbjct: 72  DQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANR 131

Query: 596 DLMERLIFHLARVAYHEEANRMT 618
           D ++ L+  L +V  HEE N+M 
Sbjct: 132 DTLKALLEFLQKVVDHEEKNKMN 154

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 446
           +++EL  +ID+      +L   +   LA LLK FLRE+P+PLLTF+ Y  ++ +  +   
Sbjct: 57  RLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDE 116

Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVA-YH----EEANRMTPNSLAIVFA 497
           E+R   L  +   LPK + D ME L   L  V+ +     E  ++M  ++LA V  
Sbjct: 117 EERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVIT 172

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TE 447
            QEL+ K  EG       +    H  A+LLKLF+RE+P+PLLT EY   F     L   +
Sbjct: 57  CQELEAKFYEGTFL---WDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKK 113

Query: 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
           D++  L  ++  LP+ N D ++ L+  L +V  HEE N+M   ++A++ A  L
Sbjct: 114 DQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNL 166

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 14/102 (13%)

Query: 535 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--------------DLTEDRV 580
           ++L  +S H + ++LK FL+E+PEP+L F+ Y++F+  A               + E+ +
Sbjct: 61  VDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENII 120

Query: 581 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            +L  +L  LP  N++ +  L+ HL RVA   E N+M+PN+L
Sbjct: 121 RSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNL 162

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
           P L+ +L+  IE +G+ +  +YR +   S + EL+ +I +     ++LE + V  LA+ L
Sbjct: 16  PPLLIKLVEAIEKKGLESSTLYR-TQSSSSLTELR-QILDCDAASVDLEQFDVAALADAL 73

Query: 213 KLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILK--TLPKPNFDLMERLIFH 267
           K +L ++P P++    Y E +  A     +++    L  +++   LP   +  ++ L+ H
Sbjct: 74  KRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKH 133

Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQL 323
             R+      N ++  +LA +F+P +   R  PA     +       IE++I+ + 
Sbjct: 134 FFRLCQSSSKNLLSARALAEIFSPLLF--RFQPASSDSPEFH--IRIIEVLITSEW 185

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 158 RLITTIELRGIYTEGIYRKSGIHSK----IQELKTKIDEGKLPELELEVYSVHILANLLK 213
           RL+  +  RG+  EG++ + G+ S+    + E++  +D G          S   +A  L 
Sbjct: 56  RLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPF---NSPGSAESVAEALL 112

Query: 214 LFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAY 273
           LFL  +P+P++ +  YE  L A    E+    +  I  +LP  + ++   L   L  +  
Sbjct: 113 LFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRI--SLPPVHRNVFVYLCSFLRELLS 170

Query: 274 HEEANRMTPNSLAIVFAPCILR 295
                 +  N+LA +F   +LR
Sbjct: 171 ESADRGLDENTLATIFGRVLLR 192

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 519 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-- 576
           +++EL  +ID+      +L   +   LA LLK FLRE+P+PLLTF+ Y  ++ +  +   
Sbjct: 57  RLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDE 116

Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVA--------------YHEEANRMTPNSL 622
           E+R   L  +   LPK + D ME L   L  V+               H  A  +TPN L
Sbjct: 117 EERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNIL 176

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 35/186 (18%)

Query: 138 FGVPLSQLSSSDGK-VPSLVDRLITTIELRGIYTEGIYRKSGIHSK------IQELKTKI 190
           FGV L      D K VP +V  +++ ++           +  + +         +L+  +
Sbjct: 1   FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLL 60

Query: 191 DEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---------DL 238
           ++ K P+ E+ +   +    +A++LKL+L E+P+ L+  + Y+  +R+          D 
Sbjct: 61  NKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYD-LIRSLYSAYPPSQEDS 119

Query: 239 TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS---------LAIVF 289
              R+  L S L  LPK +   ++ +I H  R+        +T            LA   
Sbjct: 120 DTARIQGLQSTLSQLPKSHIATLDAIITHFYRLI------EITKMGESEEEYADKLATSL 173

Query: 290 APCILR 295
           +  ILR
Sbjct: 174 SREILR 179

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 404 ELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVST---LFSIL 457
           EL  E+Y  ++++  +LK +LRE+PEPL+T + YE  L A    L  D  +      SI+
Sbjct: 64  ELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII 123

Query: 458 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE 506
             LP      +  L+ HL+ V  + E N+MTP +LA+ F   L     E
Sbjct: 124 DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQE 172

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 25/131 (19%)

Query: 389 KIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR--- 441
           +I+EL+        P+     + + Y+VH  A++L+ +L  +PEPL+  + YEEF     
Sbjct: 62  RIRELQLIFSTP--PDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119

Query: 442 -------------AADLTED---RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN 485
                           L  D    +     ++  LP  N  L+  L+  LA  A + + N
Sbjct: 120 KRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKN 179

Query: 486 RMTPNSLAIVF 496
            MT ++LA +F
Sbjct: 180 LMTASNLAAIF 190

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 367 SANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEV---YSVHILANLLKLFL 423
             N  +R+   + P    + H    +L+  +++ K P+ E+ +   +    +A++LKL+L
Sbjct: 34  LINDEVRRNVWTDPVSLKETH----QLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYL 89

Query: 424 REMPEPLLTFEYYEEFLRAA---------DLTEDRVSTLFSILKTLPKPNFDLMERLIFH 474
            E+P+ L+  + Y+  +R+          D    R+  L S L  LPK +   ++ +I H
Sbjct: 90  LELPDSLIPHDIYD-LIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITH 148

Query: 475 LAR 477
             R
Sbjct: 149 FYR 151

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 55.2 bits (133), Expect = 9e-09
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 520 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA-ADLTED 578
           ++ L+ ++D G+  +L  E   V   A+LL+LFL+E+PE L+        ++   D   +
Sbjct: 51  VEWLRQRLDSGEEVDLSKEA-DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGE 109

Query: 579 RV--STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDA 624
                 L  +L+ LP  N+ L++ L   L+ VA     NRMT  +L A
Sbjct: 110 DEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAA 157

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           S+IQ+L++ I E     +  +    + +A++LK + R++PEPLLT +  E F+       
Sbjct: 49  SRIQKLRSMI-ESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVP 107

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E R+  +   +  LP  N ++++ L++ L+ VA + + N+MT  +L
Sbjct: 108 KEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNL 154

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 13/97 (13%)

Query: 523 LKTKIDEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA------ 573
           L+  +++ K P+ E+ +   +    +A++LKL+L E+P+ L+  + Y+  +R+       
Sbjct: 56  LRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYD-LIRSLYSAYPP 114

Query: 574 ---DLTEDRVSTLFSILKTLPKPNFDLMERLIFHLAR 607
              D    R+  L S L  LPK +   ++ +I H  R
Sbjct: 115 SQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYR 151

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
            ++ ELK ++D+   P   LE    H+ A+LLKL+LRE+ EPL+    Y++ + A++   
Sbjct: 51  DEVNELKLRVDQWDYPLSGLE--DPHVPASLLKLWLRELEEPLIPDALYQQCISASE-DP 107

Query: 578 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSL 622
           D+      I++ LP  N  ++  LI  L   A  E     +M  ++L
Sbjct: 108 DKA---VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNL 151

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 25/129 (19%)

Query: 519 KIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLR--- 571
           +I+EL+        P+     + + Y+VH  A++L+ +L  +PEPL+  + YEEF     
Sbjct: 62  RIRELQLIFSTP--PDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119

Query: 572 -------------AADLTED---RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN 615
                           L  D    +     ++  LP  N  L+  L+  LA  A + + N
Sbjct: 120 KRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKN 179

Query: 616 RMTPNSLDA 624
            MT ++L A
Sbjct: 180 LMTASNLAA 188

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 534 ELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAA--DLTEDRVST---LFSIL 587
           EL  E+Y  ++++  +LK +LRE+PEPL+T + YE  L A    L  D  +      SI+
Sbjct: 64  ELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII 123

Query: 588 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             LP      +  L+ HL+ V  + E N+MTP +L
Sbjct: 124 DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 416 ANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILKTLPKPNFDLMERLI 472
           A +LKL+ R +  PL   E +E+ +      + TE RV  +  IL TLP+    +M  L 
Sbjct: 76  AGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTE-RVHQIREILSTLPRSVIIVMRYLF 134

Query: 473 FHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQEL-KTKI 527
             L  ++   + N M P +LAI F   L   + EG+    +++  + + EL KT I
Sbjct: 135 AFLNHLSQFSDENMMDPYNLAICFGPTL-MPVPEGQ---DQVSCQAHVNELIKTII 186

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1 domain)

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 83  PTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
           PT C+ C        ++ L C  C    H++C++ +  ECG 
Sbjct: 11  PTFCDHCGEFLWGLGKQGLKCSWCGLNVHKRCHSLVPPECGC 52

This domain is also known as the Protein kinase C conserved region 1 (C1) domain. Length = 53

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 410 YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLME 469
            S   +A  L LFL  +P+P++ +  YE  L A    E+    +  I  +LP  + ++  
Sbjct: 102 GSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRI--SLPPVHRNVFV 159

Query: 470 RLIFHLARVAYHEEANRMTPNSLAIVFA 497
            L   L  +        +  N+LA +F 
Sbjct: 160 YLCSFLRELLSESADRGLDENTLATIFG 187

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 384 PQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
            Q  S + EL+ +I +     ++LE + V  LA+ LK +L ++P P++    Y E +  A
Sbjct: 39  TQSSSSLTELR-QILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRA 97

Query: 444 ---DLTEDRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQ 498
                +++    L  +++   LP   +  ++ L+ H  R+      N ++  +LA +F+ 
Sbjct: 98  QEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSP 157

Query: 499 EL 500
            L
Sbjct: 158 LL 159

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 546 ANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILKTLPKPNFDLMERLI 602
           A +LKL+ R +  PL   E +E+ +      + TE RV  +  IL TLP+    +M  L 
Sbjct: 76  AGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTE-RVHQIREILSTLPRSVIIVMRYLF 134

Query: 603 FHLARVAYHEEANRMTPNSL 622
             L  ++   + N M P +L
Sbjct: 135 AFLNHLSQFSDENMMDPYNL 154

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 540 YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLME 599
            S   +A  L LFL  +P+P++ +  YE  L A    E+    +  I  +LP  + ++  
Sbjct: 102 GSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRI--SLPPVHRNVFV 159

Query: 600 RLIFHLARVAYHEEANRMTPNSL 622
            L   L  +        +  N+L
Sbjct: 160 YLCSFLRELLSESADRGLDENTL 182

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1)

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGEC 122
           H    K    PT C++C     W + +  L C  C+  CH+KC  ++   C
Sbjct: 1   HRFVRKSFFKPTFCDVCRKSI-WGLFKQGLRCSWCKVKCHKKCADKVPPSC 50

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). Length = 50

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 527 IDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTL 583
           I +     ++LE + V  LA+ LK +L ++P P++    Y E +  A     +++    L
Sbjct: 51  ILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLL 110

Query: 584 FSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLDA 624
             +++   LP   +  ++ L+ H  R+      N ++  +L  
Sbjct: 111 RKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAE 153

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)

Query: 86  CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
           C IC   F+ P+    V   C H   R C  + +
Sbjct: 2   CPICLEEFREPV----VLLPCGHVFCRSCIDKWL 31

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	625
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
KOG3564|consensus	604		100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
KOG1453|consensus	918		100.0
KOG4407|consensus	1973		99.98
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.98
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.97
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.97
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	99.97
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	99.97
KOG2200|consensus	674		99.97
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	99.97
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	99.96
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	99.96
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	99.96
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	99.96
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	99.96
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	99.96
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	99.96
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	99.96
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	99.96
KOG1451|consensus	812		99.96
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	99.96
KOG1450|consensus	650		99.96
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	99.96
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	99.96
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	99.96
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	99.96
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	99.96
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	99.96
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	99.96
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	99.96
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	99.96
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	99.96
KOG4269|consensus	1112		99.96
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	99.96
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	99.96
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	99.96
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	99.96
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	99.96
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	99.96
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.95
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	99.95
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	99.95
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	99.95
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	99.95
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	99.95
KOG4270|consensus	577		99.94
KOG4406|consensus	467		99.94
KOG4724|consensus	741		99.94
KOG2200|consensus	674		99.94
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	99.94
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.93
KOG2710|consensus	412		99.93
KOG4270|consensus	577		99.93
KOG1453|consensus	918		99.93
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.93
KOG1117|consensus	1186		99.93
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.91
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.91
KOG3564|consensus	604		99.89
KOG4269|consensus	1112		99.88
KOG1117|consensus	1186		99.87
KOG4407|consensus	1973		99.87
KOG2710|consensus	412		99.87
KOG1452|consensus	442		99.85
KOG1450|consensus	650		99.85
KOG1451|consensus	812		99.84
KOG4406|consensus	467		99.81
KOG4271|consensus	1100		99.75
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.65
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.65
KOG4724|consensus	741		99.63
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.5
KOG4271|consensus	1100		99.45
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.45
KOG4370|consensus	514		99.44
KOG1452|consensus	442		99.43
KOG0696|consensus	683		99.19
KOG3565|consensus	640		99.11
KOG4370|consensus	514		98.99
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	98.91
KOG4236|consensus	888		98.71
KOG0694|consensus	694		98.67
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	98.66
KOG4236|consensus	888		98.64
KOG0695|consensus	593		98.58
KOG3565|consensus	640		98.56
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	98.5
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	98.44
KOG0696|consensus	683		98.35
KOG4239|consensus	348		98.33
KOG1011|consensus	1283		97.82
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	97.33
KOG0694|consensus	694		97.26
KOG2996|consensus	865		97.15
KOG1449|consensus	670		97.08
KOG0193|consensus	678		96.15
KOG1449|consensus	670		94.31
KOG3532|consensus	1051		89.85
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	89.58
KOG1169|consensus	634		85.19
KOG3532|consensus	1051		82.58

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=1.5e-41  Score=331.40  Aligned_cols=189  Identities=31%  Similarity=0.633  Sum_probs=172.4

Q ss_pred             ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcC-CCCCCCccCc-ChHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG-KLPELELEVY-SVHILANLLKL  214 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g-~~~~~~~~~~-d~~~va~~lK~  214 (625)
                      ||++|+.++..++ .||.++.+|++||+++|+.+|||||+||+.++++++++.+|++ ....+....+ |+|+||++||.
T Consensus         1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~   80 (194)
T cd04372           1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL   80 (194)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence            8999999998765 8999999999999999999999999999999999999999984 3233332233 89999999999


Q ss_pred             HHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccc
Q psy10137        215 FLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPC  292 (625)
Q Consensus       215 fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~  292 (625)
                      |||+||+||+|+++|+.|+++.+..+  +++.+++.++.+||+.|+.+|.+|+.||++|+++++.||||+.|||+||||+
T Consensus        81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~  160 (194)
T cd04372          81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPT  160 (194)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcc
Confidence            99999999999999999999987654  7889999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        293 ILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       293 Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |++++..+....+.++..+..+|++||+|+..||
T Consensus       161 Ll~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF  194 (194)
T cd04372         161 LMRPPEDSALTTLNDMRYQILIVQLLITNEDVLF  194 (194)
T ss_pred             cCCCCCccHHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence            9999766666778899999999999999999887

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=5e-41  Score=324.70  Aligned_cols=183  Identities=44%  Similarity=0.868  Sum_probs=169.4

Q ss_pred             ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR  217 (625)
Q Consensus       138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr  217 (625)
                      ||++|+.++.....||.++.+|++||+++|+.+|||||++|+..+++++++.++.|. ..++++++|+|+||++||.|||
T Consensus         1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~-~~~~~~~~d~h~va~lLK~flR   79 (186)
T cd04407           1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADP-ENVKLENYPIHAITGLLKQWLR   79 (186)
T ss_pred             CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCC-cccCcccCCHHHHHHHHHHHHH
Confidence            899999998877799999999999999999999999999999999999999999874 3456678899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+||+|+++|+.|+.+.+..+  +++.+++.++..||+.|+.+|++|+.||++|+++++.|+||++|||+||||+|+|
T Consensus        80 eLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~  159 (186)
T cd04407          80 ELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR  159 (186)
T ss_pred             hCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence            99999999999999999987655  7889999999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCchhhHHhhHHHHHHHHHHHHh
Q psy10137        296 QRH-FPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       296 ~~~-~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      ++. .++..++.++.++..+||+||++
T Consensus       160 ~~~~~d~~~~~~~~~~~~~~v~~li~~  186 (186)
T cd04407         160 CPDSSDPLTSMKDVAKTTTCVEMLIKE  186 (186)
T ss_pred             CCCCCCHHHHHHhhhhhHHHHHHHhhC
Confidence            753 34456789999999999999974

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=1.2e-40  Score=321.99  Aligned_cols=182  Identities=49%  Similarity=0.896  Sum_probs=168.7

Q ss_pred             ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR  217 (625)
Q Consensus       138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr  217 (625)
                      ||++|+.+...++.||.++.+|++||+++|+.+|||||++|+.+++++|++.||.|. ..++++++|+|+||++||.|||
T Consensus         1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~-~~~~~~~~d~h~va~lLK~fLR   79 (186)
T cd04406           1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDA-NSVNLDDYNIHVIASVFKQWLR   79 (186)
T ss_pred             CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCC-CCCCcccCCHHHHHHHHHHHHH
Confidence            899999998878899999999999999999999999999999999999999999864 2456678899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+||+|+++|+.|+++.+..+  +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+|
T Consensus        80 eLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~  159 (186)
T cd04406          80 DLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR  159 (186)
T ss_pred             hCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence            99999999999999999987665  7888999999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCchhhHHhhHHHHHHHHHHHH
Q psy10137        296 QRH-FPAQDALSDISRQTLCIELIIS  320 (625)
Q Consensus       296 ~~~-~~~~~~~~~~~~~~~~ve~lI~  320 (625)
                      +++ .++..++.|+.+|+.+||+||.
T Consensus       160 ~p~~~d~~~~~~~~~~~~~~~~~~~~  185 (186)
T cd04406         160 CPDTTDPLQSVQDISKTTTCVELIVC  185 (186)
T ss_pred             CCCCCCHHHHHHHHhhccchhhhhcc
Confidence            854 3445679999999999999985

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=4.3e-40  Score=320.57  Aligned_cols=190  Identities=30%  Similarity=0.533  Sum_probs=175.8

Q ss_pred             eecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137        137 VFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL  216 (625)
Q Consensus       137 ~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL  216 (625)
                      +||+||+.++. ++.||.++.+|++||+++|+.+|||||++|+.++++++++.+|+|+.  ++++.+|+|++|+++|+||
T Consensus         1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~--~~~~~~~~~~va~~lK~fl   77 (192)
T cd04402           1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVE--VDLKAEPVLLLASVLKDFL   77 (192)
T ss_pred             CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCC--CCCccCCHHHHHHHHHHHH
Confidence            59999999998 67999999999999999999999999999999999999999999853  4567899999999999999


Q ss_pred             HhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccc
Q psy10137        217 REMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL  294 (625)
Q Consensus       217 r~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Ll  294 (625)
                      |+||+||+|++.|+.|+.+++..+  +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+
T Consensus        78 reLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~  157 (192)
T cd04402          78 RNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLL  157 (192)
T ss_pred             HhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccccc
Confidence            999999999999999999887654  788999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        295 RQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       295 r~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      |++... ...+.+......++++||+|+.+||+|++
T Consensus       158 ~~~~~~-~~~~~~~~~~~~~~~~LI~~~~~IF~~~~  192 (192)
T cd04402         158 WPPASS-ELQNEDLKKVTSLVQFLIENCQEIFGEDI  192 (192)
T ss_pred             CCCCcc-HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence            996543 34567788899999999999999998873

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=2.7e-40  Score=323.44  Aligned_cols=183  Identities=37%  Similarity=0.574  Sum_probs=166.6

Q ss_pred             ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL  216 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL  216 (625)
                      ||++|+.+....+ .||.+|.+|++||+++|+++|||||++|+..++++|++.|++|.. .++++++|+|+||++||+||
T Consensus         1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~lLK~fL   79 (200)
T cd04408           1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRD-LVDLSGHSPHDITSVLKHFL   79 (200)
T ss_pred             CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCC-ccCcccCCHHHHHHHHHHHH
Confidence            8999999998655 899999999999999999999999999999999999999999853 45667789999999999999


Q ss_pred             HhCCCCCCChhhHHHHHHHhcC--------------chHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCc
Q psy10137        217 REMPEPLLTFEYYEEFLRAADL--------------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTP  282 (625)
Q Consensus       217 r~Lp~pLl~~~~y~~~l~~~~~--------------~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~  282 (625)
                      |+||+||+|+++|+.|+.+.+.              .++++.+++.++..||+.|+.||.+|+.||++|+.+++.|+||+
T Consensus        80 ReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~  159 (200)
T cd04408          80 KELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP  159 (200)
T ss_pred             HhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence            9999999999999999987642              12578999999999999999999999999999999999999999


Q ss_pred             cchhhhccccccccCCCC--chhhHHhhHHHHHHHHHHHHh
Q psy10137        283 NSLAIVFAPCILRQRHFP--AQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       283 ~nLaivf~P~Llr~~~~~--~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      .|||+||||+|++++...  ....+.|+..|..+||+||.|
T Consensus       160 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~  200 (200)
T cd04408         160 NNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN  200 (200)
T ss_pred             hHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence            999999999999996432  345578999999999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=1.2e-39  Score=319.44  Aligned_cols=190  Identities=31%  Similarity=0.535  Sum_probs=171.1

Q ss_pred             eeecccccccccCC-----CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHH
Q psy10137        136 RVFGVPLSQLSSSD-----GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN  210 (625)
Q Consensus       136 ~~FG~~L~~l~~~~-----~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~  210 (625)
                      .+||++|++++...     ..||.++.+|++||+++|+++|||||++|+..+++++++.+|+|....++ ..+|+|+||+
T Consensus         1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~d~h~va~   79 (199)
T cd04390           1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVAS   79 (199)
T ss_pred             CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcc-ccCCHHHHHH
Confidence            37999999987522     26999999999999999999999999999999999999999998644433 3579999999


Q ss_pred             HHHHHHHhCCCCCCChhhHHHHHHHhcCc---h-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchh
Q psy10137        211 LLKLFLREMPEPLLTFEYYEEFLRAADLT---E-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLA  286 (625)
Q Consensus       211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~---~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLa  286 (625)
                      +||.|||+||+||+|++.|+.|+.+....   + .++..++.++..||+.|+.+|.+|+.||++|+++++.|+||++|||
T Consensus        80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  159 (199)
T cd04390          80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA  159 (199)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence            99999999999999999999999987642   2 5678899999999999999999999999999999999999999999


Q ss_pred             hhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        287 IVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       287 ivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      +||||+|+|++..+....+.+......++++||+|++.+|
T Consensus       160 ivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~~~~~~F  199 (199)
T cd04390         160 TVFGPNILRPKVEDPATIMEGTPQIQQLMTVMISKHEPLF  199 (199)
T ss_pred             HHhccccCCCCCCCHHHHHhccHHHHHHHHHHHHhhhhcC
Confidence            9999999999776677778888888999999999988876

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=7.9e-40  Score=318.70  Aligned_cols=185  Identities=35%  Similarity=0.658  Sum_probs=166.2

Q ss_pred             eeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCc--cCcChHHHHHHH
Q psy10137        136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELEL--EVYSVHILANLL  212 (625)
Q Consensus       136 ~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~--~~~d~~~va~~l  212 (625)
                      ++||++|++++...+ .||.++..|++||+++|+ +|||||+||+.++++++++.+|+|....+..  ...|+|+||++|
T Consensus         1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL   79 (195)
T cd04384           1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC   79 (195)
T ss_pred             CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence            489999999986554 999999999999999999 5999999999999999999999986433321  235999999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |.|||+||+||+|+++|+.|+++.+..+  +++++++.++.+||+.|+.||++|+.||++|+++++.|+||++|||+|||
T Consensus        80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~  159 (195)
T cd04384          80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWA  159 (195)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhh
Confidence            9999999999999999999999987644  78899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCc-----hhhHHhhHHHHHHHHHHHHh
Q psy10137        291 PCILRQRHFPA-----QDALSDISRQTLCIELIISE  321 (625)
Q Consensus       291 P~Llr~~~~~~-----~~~~~~~~~~~~~ve~lI~~  321 (625)
                      |+|++++....     ...+.++..|..+|++||.|
T Consensus       160 P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~  195 (195)
T cd04384         160 PNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH  195 (195)
T ss_pred             hhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence            99999954222     45688999999999999986

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=1.5e-39  Score=315.40  Aligned_cols=183  Identities=38%  Similarity=0.657  Sum_probs=165.5

Q ss_pred             ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCC-ccCcChHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELE-LEVYSVHILANLLKLF  215 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~-~~~~d~~~va~~lK~f  215 (625)
                      ||++|+.++..++ .||.++.+|+.||+++|+++|||||++|+...+++|+..+|.|...+++ .+..|+|++|++||.|
T Consensus         1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (187)
T cd04403           1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF   80 (187)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence            8999999987655 8999999999999999999999999999999999999999997543332 2345999999999999


Q ss_pred             HHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccc
Q psy10137        216 LREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI  293 (625)
Q Consensus       216 Lr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~L  293 (625)
                      ||+||+||+|++.|+.|+++.+..+  +++.+++.++..||+.|+.+|.+|+.||++|+++++.|+||+.|||+||||+|
T Consensus        81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~l  160 (187)
T cd04403          81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTL  160 (187)
T ss_pred             HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccc
Confidence            9999999999999999999988764  78999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137        294 LRQRHFPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       294 lr~~~~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      +|++.... ....++.+|.++||+||++
T Consensus       161 l~~~~~~~-~~~~~~~~~~~~ve~l~~~  187 (187)
T cd04403         161 LRPEQETG-NIAVHMVYQNQIVELILLE  187 (187)
T ss_pred             cCCCCcch-HHHHHhHHHHHHHHHHhhC
Confidence            99965433 3445788999999999975

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=1.6e-39  Score=319.40  Aligned_cols=196  Identities=31%  Similarity=0.521  Sum_probs=174.0

Q ss_pred             ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCC-CCccCcChHHHHHHH
Q psy10137        135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE-LELEVYSVHILANLL  212 (625)
Q Consensus       135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~-~~~~~~d~~~va~~l  212 (625)
                      +++||++|.+++..++ .||.++.+|+.||+++|+.+|||||++|+..+++.+++.+|.|.... .....+|+|++|++|
T Consensus         2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l   81 (203)
T cd04386           2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL   81 (203)
T ss_pred             CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence            4689999999987554 89999999999999999999999999999999999999999986321 233456999999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |.|||+||+||+|++.|+.|+.+.+..+  +++..++.++.+||+.|+.+|++|+.||++|+++++.|+|+++|||+|||
T Consensus        82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~fa  161 (203)
T cd04386          82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLA  161 (203)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhc
Confidence            9999999999999999999999987654  78899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCch--hhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        291 PCILRQRHFPAQ--DALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       291 P~Llr~~~~~~~--~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      |+|+|++.....  ...........++++||+||..||+|++
T Consensus       162 P~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~~  203 (203)
T cd04386         162 PNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGEV  203 (203)
T ss_pred             cccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCCC
Confidence            999999654322  2234566789999999999999999864

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=2.9e-39  Score=320.12  Aligned_cols=191  Identities=27%  Similarity=0.496  Sum_probs=171.2

Q ss_pred             ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHH
Q psy10137        135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLK  213 (625)
Q Consensus       135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK  213 (625)
                      +++||+||..++...+ .||.+|.+|+.||+.+|+.+|||||++|+..++++|++.+|.+. ...+++.+++|+||++||
T Consensus         2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~-~~~~~~~~~~~~va~lLK   80 (220)
T cd04375           2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESST-DNVNYDGQQAYDVADMLK   80 (220)
T ss_pred             CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCC-CccCcccccHHHHHHHHH
Confidence            4699999998776554 89999999999999999999999999999999999999999863 234667789999999999


Q ss_pred             HHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137        214 LFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP  291 (625)
Q Consensus       214 ~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P  291 (625)
                      +|||+||+||+|+++|+.|+.+.+..+  +++++++.++..||++|+.+|++|+.||++|+.+++.|+||++|||+||||
T Consensus        81 ~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP  160 (220)
T cd04375          81 QYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP  160 (220)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence            999999999999999999999876432  788999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCC-------------------CchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        292 CILRQRHF-------------------PAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       292 ~Llr~~~~-------------------~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      +||+....                   +....+.+....+.+|.+||+|+.++|
T Consensus       161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf  214 (220)
T cd04375         161 SLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLF  214 (220)
T ss_pred             hhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998432                   123456777888999999999999888

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=3e-39  Score=317.24  Aligned_cols=183  Identities=37%  Similarity=0.627  Sum_probs=165.6

Q ss_pred             ecccccccccCC-CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSD-GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL  216 (625)
Q Consensus       138 FG~~L~~l~~~~-~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL  216 (625)
                      ||++|+.++... +.||.+|.+|+++|+++|+.+|||||++|+..+++++++.|++|. ..++++++|+|++|++||+||
T Consensus         1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~-~~~~~~~~~~h~va~~LK~fL   79 (203)
T cd04378           1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGK-DLVELSELSPHDISSVLKLFL   79 (203)
T ss_pred             CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCC-CccccccCCHHHHHHHHHHHH
Confidence            899999998865 499999999999999999999999999999999999999999975 335667889999999999999


Q ss_pred             HhCCCCCCChhhHHHHHHHhcCc----------------hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q psy10137        217 REMPEPLLTFEYYEEFLRAADLT----------------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM  280 (625)
Q Consensus       217 r~Lp~pLl~~~~y~~~l~~~~~~----------------~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkM  280 (625)
                      |+||+||+|+++|+.|+.+++..                .+++.+++.++..||+.|+.||.+|+.||++|+++++.|+|
T Consensus        80 ReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM  159 (203)
T cd04378          80 RQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKM  159 (203)
T ss_pred             HhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999987421                14678999999999999999999999999999999999999


Q ss_pred             CccchhhhccccccccCCCCc---hhhHHhhHHHHHHHHHHHHh
Q psy10137        281 TPNSLAIVFAPCILRQRHFPA---QDALSDISRQTLCIELIISE  321 (625)
Q Consensus       281 t~~nLaivf~P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~  321 (625)
                      +++|||+||||+|+|++..+.   ..++.++..|+.+||+||.|
T Consensus       160 ~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~  203 (203)
T cd04378         160 SPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN  203 (203)
T ss_pred             CHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence            999999999999999965422   34577999999999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=4.5e-39  Score=317.23  Aligned_cols=183  Identities=34%  Similarity=0.616  Sum_probs=163.5

Q ss_pred             ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFL  216 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fL  216 (625)
                      ||++|+.++...+ .||.+|.+|+++|+++|+.+|||||++|+..++++|++.|++|.. .++++++|+|++|++||.||
T Consensus         1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~~LK~fL   79 (211)
T cd04409           1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKD-LVELSELSPHDISNVLKLYL   79 (211)
T ss_pred             CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCC-ccccccCCHHHHHHHHHHHH
Confidence            8999999987554 899999999999999999999999999999999999999999852 34566789999999999999


Q ss_pred             HhCCCCCCChhhHHHHHHHhcCc------------------------hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy10137        217 REMPEPLLTFEYYEEFLRAADLT------------------------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVA  272 (625)
Q Consensus       217 r~Lp~pLl~~~~y~~~l~~~~~~------------------------~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~  272 (625)
                      |+||+||+|+++|+.|+++++..                        +.++.+++.++.+||++|+.||++|+.||++|+
T Consensus        80 ReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~  159 (211)
T cd04409          80 RQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVS  159 (211)
T ss_pred             HhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876421                        013568899999999999999999999999999


Q ss_pred             hccCcCCCCccchhhhccccccccCCCCc---hhhHHhhHHHHHHHHHHHHh
Q psy10137        273 YHEEANRMTPNSLAIVFAPCILRQRHFPA---QDALSDISRQTLCIELIISE  321 (625)
Q Consensus       273 ~~~~~NkMt~~nLaivf~P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~  321 (625)
                      ++++.|+||++|||+||||+|+|++..+.   ..++.++..|..+||+||.+
T Consensus       160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~~  211 (211)
T cd04409         160 EQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLITY  211 (211)
T ss_pred             cccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhhC
Confidence            99999999999999999999999965432   34577999999999999974

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=6.5e-39  Score=310.71  Aligned_cols=183  Identities=52%  Similarity=0.930  Sum_probs=169.9

Q ss_pred             ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR  217 (625)
Q Consensus       138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr  217 (625)
                      ||++|+.++..++.||.++..|++||+++|+++|||||++|+..+++++++.+++|. ..++++++|+|+||++||+|||
T Consensus         1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~-~~~~~~~~~~~~va~~LK~flr   79 (186)
T cd04377           1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLR   79 (186)
T ss_pred             CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCC-cccCcccCCHHHHHHHHHHHHH
Confidence            899999999877799999999999999999999999999999999999999999973 3566778999999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+||+|++.|+.|+.+.+..+  +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|
T Consensus        80 ~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~  159 (186)
T cd04377          80 ELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR  159 (186)
T ss_pred             cCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence            99999999999999999987665  7889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC-CchhhHHhhHHHHHHHHHHHHh
Q psy10137        296 QRHF-PAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       296 ~~~~-~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      ++.. ++..+++|+.+++.+||+||++
T Consensus       160 ~~~~~~~~~~~~d~~~~~~~~e~li~~  186 (186)
T cd04377         160 CPDTADPLQSLQDVSKTTTCVETLIKE  186 (186)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            8543 3446799999999999999974

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=9.1e-39  Score=316.81  Aligned_cols=191  Identities=33%  Similarity=0.495  Sum_probs=171.3

Q ss_pred             eecccccccccCC------CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC-CCCCccCcChHHHH
Q psy10137        137 VFGVPLSQLSSSD------GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL-PELELEVYSVHILA  209 (625)
Q Consensus       137 ~FG~~L~~l~~~~------~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~-~~~~~~~~d~~~va  209 (625)
                      +||+||+.++..+      ..||.++.+|+.+|+++|+.+|||||++|+..++++|++.++.+.. ..++++.+|+|++|
T Consensus         1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va   80 (216)
T cd04391           1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA   80 (216)
T ss_pred             CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence            6999999998643      3799999999999999999999999999999999999999998632 24667788999999


Q ss_pred             HHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhh
Q psy10137        210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI  287 (625)
Q Consensus       210 ~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLai  287 (625)
                      ++||.|||+||+||+|+++|+.|+.+.+..+  +++.+++.++..||+.|+.+|++|+.||++|+++++.||||++|||+
T Consensus        81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  160 (216)
T cd04391          81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM  160 (216)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence            9999999999999999999999999887765  67899999999999999999999999999999999999999999999


Q ss_pred             hccccccccCCCCc------hhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137        288 VFAPCILRQRHFPA------QDALSDISRQTLCIELIISEQLKKLA  327 (625)
Q Consensus       288 vf~P~Llr~~~~~~------~~~~~~~~~~~~~ve~lI~~~~~if~  327 (625)
                      ||||+||++.....      ...+.+......++++||+|+..||.
T Consensus       161 vfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~  206 (216)
T cd04391         161 IMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWT  206 (216)
T ss_pred             HhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence            99999999854322      23456667788999999999999984

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=5.2e-39  Score=311.36  Aligned_cols=184  Identities=28%  Similarity=0.492  Sum_probs=163.8

Q ss_pred             eeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCC-CccCcChHHHHHHHH
Q psy10137        136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLK  213 (625)
Q Consensus       136 ~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~-~~~~~d~~~va~~lK  213 (625)
                      ++||++|++++...+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|..... +.+.+|+|+||++||
T Consensus         1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK   80 (188)
T cd04383           1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK   80 (188)
T ss_pred             CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence            479999999987655 899999999999999999999999999999999999999999864322 234679999999999


Q ss_pred             HHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137        214 LFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP  291 (625)
Q Consensus       214 ~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P  291 (625)
                      .|||+||+||+|+++|+.|+++.+..+  +++..++.++.+||+.|+.+|++|+.||++|+++++.|+||++|||+||||
T Consensus        81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P  160 (188)
T cd04383          81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGP  160 (188)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeec
Confidence            999999999999999999999987654  788999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137        292 CILRQRHFPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       292 ~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      +|+|.+.  ..+.+.......++++.||.|
T Consensus       161 ~L~~~p~--~~~~~~~~~~~~~~~~~li~~  188 (188)
T cd04383         161 TLMPVPE--GQDQVSCQAHVNELIKTIIIH  188 (188)
T ss_pred             cccCCCC--CccHHHHHHHHHHHHHHHhcC
Confidence            9999754  334455566777788888764

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=9.5e-39  Score=315.81  Aligned_cols=189  Identities=30%  Similarity=0.468  Sum_probs=168.4

Q ss_pred             ecccccccccCCC------------CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcCh
Q psy10137        138 FGVPLSQLSSSDG------------KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSV  205 (625)
Q Consensus       138 FG~~L~~l~~~~~------------~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~  205 (625)
                      ||+||+.++..++            .||.++.+|+.+|+++|+.+|||||++|+..+++++++.|++|.....++..+|+
T Consensus         1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~   80 (213)
T cd04397           1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP   80 (213)
T ss_pred             CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence            8999999887543            4999999999999999999999999999999999999999997544456677899


Q ss_pred             HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccC-----cC
Q psy10137        206 HILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----AN  278 (625)
Q Consensus       206 ~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~-----~N  278 (625)
                      |+||++||.|||+||+||+|+++|+.|+.+.+..+  ++...++.++..||+.|+.||++|+.||++|+.+++     .|
T Consensus        81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N  160 (213)
T cd04397          81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS  160 (213)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence            99999999999999999999999999999987655  678889999999999999999999999999998764     59


Q ss_pred             CCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137        279 RMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA  327 (625)
Q Consensus       279 kMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~  327 (625)
                      +||++|||+||||+|++++... .....+......+|++||+|+..+|.
T Consensus       161 kM~~~NLAivf~P~Ll~~~~~~-~~~~~~~~~~~~vv~~LI~n~~~if~  208 (213)
T cd04397         161 KMDIHNLATVITPNILYSKTDN-PNTGDEYFLAIEAVNYLIENNEEFCE  208 (213)
T ss_pred             cCChHHhHHhhcccccCCCCCC-cchHHHHHHHHHHHHHHHHhHHHHhc
Confidence            9999999999999999986533 23455666788999999999999884

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=2.6e-38  Score=309.21  Aligned_cols=189  Identities=32%  Similarity=0.575  Sum_probs=171.1

Q ss_pred             eecccccccccCC--CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCC---ccCcChHHHHHH
Q psy10137        137 VFGVPLSQLSSSD--GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELE---LEVYSVHILANL  211 (625)
Q Consensus       137 ~FG~~L~~l~~~~--~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~---~~~~d~~~va~~  211 (625)
                      .||+||+......  ..||.++..|+.+|+.+|+++|||||++|+..++++|++.+|+|... ++   .+..|+|++|++
T Consensus         1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~d~~~va~l   79 (196)
T cd04395           1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFD-IDLQDPRWRDVNVVSSL   79 (196)
T ss_pred             CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCC-cCccccccccHHHHHHH
Confidence            4999999877643  48999999999999999999999999999999999999999998532 22   234699999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      ||.|||+||+||+|.+.|+.|+.+.+..+  +++..++.++.+||+.|+.||.+|+.||++|+.+++.|+|+++|||+||
T Consensus        80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f  159 (196)
T cd04395          80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF  159 (196)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence            99999999999999999999999887654  7889999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        290 APCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      ||+|+|++..+......++..+..+++.||+||..+|
T Consensus       160 aP~l~r~~~~~~~~~~~~~~~~~~ii~~LI~~~d~~f  196 (196)
T cd04395         160 GPTLVRTSDDNMETMVTHMPDQCKIVETLIQHYDWFF  196 (196)
T ss_pred             ccccCCCCCCCHHHHHHhHHHHHHHHHHHHHhCcccC
Confidence            9999999765555667789999999999999988776

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=2.6e-38  Score=307.85  Aligned_cols=161  Identities=39%  Similarity=0.646  Sum_probs=149.3

Q ss_pred             ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCC-CCCccCcChHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLF  215 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~-~~~~~~~d~~~va~~lK~f  215 (625)
                      ||++|+.++..++ .||.++.+|++||+++|+.+|||||+||+..+++++++.+|+|... ..+++.+|+|+||++||.|
T Consensus         1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (196)
T cd04387           1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY   80 (196)
T ss_pred             CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence            8999999988776 7999999999999999999999999999999999999999987432 2345678999999999999


Q ss_pred             HHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccc
Q psy10137        216 LREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI  293 (625)
Q Consensus       216 Lr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~L  293 (625)
                      ||+||+||+|+++|+.|+++.+..+  +++.+++.++.+||+.|+.||.+|+.||++|+++++.|+||+.|||+||||+|
T Consensus        81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L  160 (196)
T cd04387          81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTL  160 (196)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcccc
Confidence            9999999999999999999987655  67889999999999999999999999999999999999999999999999999


Q ss_pred             cccCC
Q psy10137        294 LRQRH  298 (625)
Q Consensus       294 lr~~~  298 (625)
                      +|++.
T Consensus       161 lr~~~  165 (196)
T cd04387         161 LRPSE  165 (196)
T ss_pred             CCCCc
Confidence            99954

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=1.9e-38  Score=306.27  Aligned_cols=175  Identities=32%  Similarity=0.474  Sum_probs=161.5

Q ss_pred             ecccccccccCC-----CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137        138 FGVPLSQLSSSD-----GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL  212 (625)
Q Consensus       138 FG~~L~~l~~~~-----~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l  212 (625)
                      ||++|++++...     ..||.++.+|++||+++|+++|||||++|+..+++++++.+++|..  ++++++|+|+||++|
T Consensus         1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~--~~~~~~d~h~va~lL   78 (182)
T cd04381           1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRES--PNLEEYEPPTVASLL   78 (182)
T ss_pred             CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCC--CCccccChHHHHHHH
Confidence            899999987643     3799999999999999999999999999999999999999999853  566789999999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |.|||+||+||+|+++|+.|.++.+..+  +++.+++.++.+||+.|+.||++|+.||.+|+++++.|+||++|||+|||
T Consensus        79 K~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa  158 (182)
T cd04381          79 KQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLS  158 (182)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhC
Confidence            9999999999999999999999887654  78999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137        291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA  329 (625)
Q Consensus       291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~  329 (625)
                      |+|+.+               ..+++.||+|+.++|+++
T Consensus       159 P~l~~~---------------~~~~~~li~~~~~if~~~  182 (182)
T cd04381         159 PTVQIS---------------NRLLYALLTHCQELFGNV  182 (182)
T ss_pred             ccccCc---------------HHHHHHHHHHHHHHcCCC
Confidence            999753               368899999999999763

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=3.9e-38  Score=307.93  Aligned_cols=189  Identities=31%  Similarity=0.584  Sum_probs=172.9

Q ss_pred             cceeecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHHHH
Q psy10137        134 GHRVFGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHILA  209 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~va  209 (625)
                      +..+||++|+.+....   ..||.++..|++||+++|+++|||||++|+..+++++++.+|+|+.  ++++.+ |+|++|
T Consensus         2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~--~~~~~~~d~~~va   79 (195)
T cd04404           2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEP--VDFDQYEDVHLPA   79 (195)
T ss_pred             CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCC--CCcccccCHHHHH
Confidence            3568999999998744   4799999999999999999999999999999999999999999853  445555 999999


Q ss_pred             HHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhh
Q psy10137        210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV  288 (625)
Q Consensus       210 ~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaiv  288 (625)
                      ++||.|||+||+||+|.+.|+.++.+.+.++ +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+|
T Consensus        80 ~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v  159 (195)
T cd04404          80 VILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV  159 (195)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence            9999999999999999999999999887654 788999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        289 FAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       289 f~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |||+|+|++..  ...++++.....++++||+||++||
T Consensus       160 faP~l~~~~~~--~~~l~~~~~~~~~~~~LI~~~~~iF  195 (195)
T cd04404         160 FGPNLLWAKDA--SMSLSAINPINTFTKFLLDHQDEIF  195 (195)
T ss_pred             eeccccCCCCc--ccCHHHHHHHHHHHHHHHHhHHhhC
Confidence            99999998643  3467899999999999999999987

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=8.8e-38  Score=306.48  Aligned_cols=180  Identities=30%  Similarity=0.456  Sum_probs=163.1

Q ss_pred             CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137        148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE  227 (625)
Q Consensus       148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~  227 (625)
                      ..+.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....++ +.+|+|+||++||.|||+||+||+|++
T Consensus         5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~~~h~va~lLK~fLReLPePLi~~~   83 (206)
T cd04376           5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRE   83 (206)
T ss_pred             CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc-ccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence            4558999999999999999999999999999999999999999998644433 457999999999999999999999999


Q ss_pred             hHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccC-----------cCCCCccchhhhccccccc
Q psy10137        228 YYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       228 ~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~-----------~NkMt~~nLaivf~P~Llr  295 (625)
                      +|+.|+.+.+... +++.+++.++.+||+.|+.+|.+|+.||++|+++++           .|+||++|||+||||+|+|
T Consensus        84 ~y~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~  163 (206)
T cd04376          84 LYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH  163 (206)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence            9999999988765 788999999999999999999999999999999986           7999999999999999999


Q ss_pred             cCCCCc------hhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        296 QRHFPA------QDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       296 ~~~~~~------~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      ++....      ...+.+...+..+|++||+||..||..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  202 (206)
T cd04376         164 KQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFMV  202 (206)
T ss_pred             CCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcCC
Confidence            964332      346778889999999999999999964

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=4.7e-38  Score=308.13  Aligned_cols=186  Identities=30%  Similarity=0.454  Sum_probs=165.1

Q ss_pred             eeccccccccc----CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137        137 VFGVPLSQLSS----SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL  212 (625)
Q Consensus       137 ~FG~~L~~l~~----~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l  212 (625)
                      +||++|..+..    ..+.||.++.+|+.||++ |+++|||||+||+..+++++++.+|+|...   ...+++|+||++|
T Consensus         1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~---~~~~~~~~vaslL   76 (202)
T cd04394           1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEAC---LSSALPCDVAGLL   76 (202)
T ss_pred             CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCC---ccccCHHHHHHHH
Confidence            69999999874    245899999999999986 699999999999999999999999998532   2457899999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |.|||+||+||+|+++|+.|+.+.+..+  ++..+++.++.+||+.|+.||.||+.||++|+++++.|+||++|||+|||
T Consensus        77 K~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfa  156 (202)
T cd04394          77 KQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFA  156 (202)
T ss_pred             HHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhc
Confidence            9999999999999999999999987664  67788889999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCc---hhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        291 PCILRQRHFPA---QDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       291 P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |+|+++.....   .....++..+..+|++||+|+.+||
T Consensus       157 P~L~~~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~  195 (202)
T cd04394         157 PNLFQSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIG  195 (202)
T ss_pred             ceeecCCCcccccchhHHHhHHHHHHHHHHHHHHHHHHc
Confidence            99999854322   1223467888999999999999887

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=4.2e-38  Score=313.40  Aligned_cols=187  Identities=28%  Similarity=0.431  Sum_probs=162.3

Q ss_pred             eeccccccccc----------------CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC--CCC
Q psy10137        137 VFGVPLSQLSS----------------SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL--PEL  198 (625)
Q Consensus       137 ~FG~~L~~l~~----------------~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~--~~~  198 (625)
                      +||++|++...                ..+.||.+|.+|+.||+++|+.+|||||++|+..++++|++.|+.|..  ..+
T Consensus         1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~   80 (225)
T cd04396           1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF   80 (225)
T ss_pred             CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence            58888887654                124799999999999999999999999999999999999999998632  345


Q ss_pred             CccCcChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcC-----------------c--hHHHHHHHHHHhhCCHHHHH
Q psy10137        199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-----------------T--EDRVSTLFSILKTLPKPNFD  259 (625)
Q Consensus       199 ~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~-----------------~--~~~~~~l~~~l~~LP~~n~~  259 (625)
                      +++.+|+|++|++||+|||+||+||+|+++|+.|+.+...                 .  ++++..++.++.+||+.|+.
T Consensus        81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~  160 (225)
T cd04396          81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQ  160 (225)
T ss_pred             CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHH
Confidence            6678899999999999999999999999999999876531                 1  27788999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHH
Q psy10137        260 LMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKK  325 (625)
Q Consensus       260 ~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~i  325 (625)
                      ||.+|+.||++|+++++.||||++|||+||||+|++++..+  ....+...+..+|++||+|+.++
T Consensus       161 ~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~--~~~~~~~~~~~~ve~lI~~~~~~  224 (225)
T cd04396         161 LLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE--MDPKEYKLSRLVVEFLIEHQDKF  224 (225)
T ss_pred             HHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc--cCHHHHHHHHHHHHHHHHhHHhh
Confidence            99999999999999999999999999999999999875422  23445677889999999997654

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=4.3e-38  Score=308.44  Aligned_cols=186  Identities=30%  Similarity=0.493  Sum_probs=162.8

Q ss_pred             ecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC-CCCCccCc-ChHHHHHHH
Q psy10137        138 FGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL-PELELEVY-SVHILANLL  212 (625)
Q Consensus       138 FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~-~~~~~~~~-d~~~va~~l  212 (625)
                      ||++|+.++..+   +.||.+|.+|++||+++|+.+|||||++|+..++++|++.|++|.. ..++.+.+ |+|+||++|
T Consensus         1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL   80 (207)
T cd04379           1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL   80 (207)
T ss_pred             CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence            899999998753   3799999999999999999999999999999999999999998642 23333333 899999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch-----HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhh
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE-----DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI  287 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~-----~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLai  287 (625)
                      |+|||+||+||+|+++|+.|+++.....     .+...++.++..||+.|+.||++|+.||++|+.+++.||||+.|||+
T Consensus        81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi  160 (207)
T cd04379          81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV  160 (207)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence            9999999999999999999999876421     34567888999999999999999999999999999999999999999


Q ss_pred             hccccccccCCCCc-----------hhhHHhhHHHHHHHHHHHHhhH
Q psy10137        288 VFAPCILRQRHFPA-----------QDALSDISRQTLCIELIISEQL  323 (625)
Q Consensus       288 vf~P~Llr~~~~~~-----------~~~~~~~~~~~~~ve~lI~~~~  323 (625)
                      ||||+|++++..+.           ..+..++...+.++.+||+-|+
T Consensus       161 vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (207)
T cd04379         161 CFGPVLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQIWP  207 (207)
T ss_pred             hhccccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHhcC
Confidence            99999999965443           2346688999999999999874

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG3564|consensus

Probab=100.00  E-value=3.4e-38  Score=323.78  Aligned_cols=246  Identities=28%  Similarity=0.501  Sum_probs=212.7

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccccCCcccccceeeccccccccc-
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSS-  147 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L~~l~~-  147 (625)
                      ..+.|.|...++..|.+|.+|++.|.++ .-+++|.+|..+||..|+.+++.+|.+....++.....   | -|.+.+. 
T Consensus       283 ~mr~htfi~kt~~~~~~Cv~C~krIkfg-~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~ge---g-~L~DF~~s  357 (604)
T KOG3564|consen  283 LMRLHTFISKTVIKPENCVPCGKRIKFG-KLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGE---G-MLADFAPS  357 (604)
T ss_pred             ccccchhhHhhccCcccchhhhhhhhhh-hcccccccCCeeechhHHhcCCCCCcCccCCCCCccCc---e-ehhhhccc
Confidence            4567999999999999999999998886 45899999999999999999999998764322221111   1 2444443 


Q ss_pred             CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137        148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE  227 (625)
Q Consensus       148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~  227 (625)
                      ..+.||.+|.+|+.+||++||.++||||+||....+++|+++|-+|+. ...+.+.|+|++|+++|+|||+|.+||||+.
T Consensus       358 ~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt-~p~~g~~Dihvic~~lKdFLR~LkePLip~~  436 (604)
T KOG3564|consen  358 TAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKT-TPHLGNDDIHVICCCLKDFLRNLKEPLIPFR  436 (604)
T ss_pred             ccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCC-CCccCCcchhHHHHHHHHHHHhcccccccch
Confidence            455999999999999999999999999999999999999999999975 4455677999999999999999999999999


Q ss_pred             hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccccc--CCCCchh
Q psy10137        228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQ--RHFPAQD  303 (625)
Q Consensus       228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~--~~~~~~~  303 (625)
                      +..+|+.|+..++  ..+.++...+.+||.+||+||.|||-|+++||+ +..|+|+..|||.+|||+|+..  ++.+...
T Consensus       437 ~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~  515 (604)
T KOG3564|consen  437 LRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVT  515 (604)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhH
Confidence            9999999998877  667899999999999999999999999999888 5669999999999999999997  3333445


Q ss_pred             hHHhhHHHHHHHHHHHHh
Q psy10137        304 ALSDISRQTLCIELIISE  321 (625)
Q Consensus       304 ~~~~~~~~~~~ve~lI~~  321 (625)
                      .++|+..|.++++-|++-
T Consensus       516 ~l~dv~~q~rvmkaLlel  533 (604)
T KOG3564|consen  516 MLQDVKTQPRVMKALLEL  533 (604)
T ss_pred             HHHhhhhhHHHHHHHHhC
Confidence            688999999999999876

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=4.7e-38  Score=303.98  Aligned_cols=175  Identities=24%  Similarity=0.433  Sum_probs=156.3

Q ss_pred             cccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCC
Q psy10137        141 PLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMP  220 (625)
Q Consensus       141 ~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp  220 (625)
                      +|.+.+...+.+|.+|.+|+++||++|+++|||||++|+.+ +.++++.|+++. ..++++.+|+|+||++||+|||+||
T Consensus         4 ~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~-~~~d~~~~dv~~va~~LK~ylReLP   81 (200)
T cd04388           4 DLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDA-ASVDLEQFDVAALADALKRYLLDLP   81 (200)
T ss_pred             cHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCC-CCCCcccccHHHHHHHHHHHHHhCC
Confidence            45555666678999999999999999999999999999876 678999999853 4567788999999999999999999


Q ss_pred             CCCCChhhHHHHHHHhcC-c--hHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        221 EPLLTFEYYEEFLRAADL-T--EDRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       221 ~pLl~~~~y~~~l~~~~~-~--~~~~~~l~~~l~--~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+|+++|++|++++.. .  +++++.++.++.  .||+.|+.||+||+.||.+|+++++.|+||++|||+||||+|||
T Consensus        82 ePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r  161 (200)
T cd04388          82 NPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFR  161 (200)
T ss_pred             CccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcC
Confidence            999999999999998743 2  278889999997  89999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137        296 QRHFPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      ++..    +..+...++++||+||.+
T Consensus       162 ~~~~----~~~~~~~~~~vvE~Li~~  183 (200)
T cd04388         162 FQPA----SSDSPEFHIRIIEVLITS  183 (200)
T ss_pred             CCcc----cccchhhHHHHHHHHHHH
Confidence            8643    456678899999999997

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=1e-37  Score=301.72  Aligned_cols=179  Identities=33%  Similarity=0.593  Sum_probs=160.5

Q ss_pred             ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR  217 (625)
Q Consensus       138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr  217 (625)
                      ||+||.+++..++.||.++.+|+.||+++|+.+|||||++|+..+++++++.+++|....+...++|+|+||++||+|||
T Consensus         1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr   80 (185)
T cd04373           1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS   80 (185)
T ss_pred             CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence            89999999998889999999999999999999999999999999999999999997544444456799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+||+|+++|+.|.++.+..+  +++..++.++..||+.|+.||.+|+.||++|+++++.|+||++|||+||||+|+|
T Consensus        81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~  160 (185)
T cd04373          81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMR  160 (185)
T ss_pred             cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCC
Confidence            99999999999999999987655  6889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137        296 QRHFPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      ++.. ....+.    .+.+++.+|++
T Consensus       161 ~~~~-~~~~~~----~~~~~q~~i~~  181 (185)
T cd04373         161 PDFT-SMEALS----ATRIYQTIIET  181 (185)
T ss_pred             CCCC-CHHHHH----ccHHHHHHHHH
Confidence            8643 223333    55667777776

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=8.7e-38  Score=304.96  Aligned_cols=185  Identities=39%  Similarity=0.634  Sum_probs=167.8

Q ss_pred             ecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCC--CC--CccCcChHHHHHHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLP--EL--ELEVYSVHILANLL  212 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~--~~--~~~~~d~~~va~~l  212 (625)
                      ||++|++++..++ .||.++.+|+++|+++|+.+|||||++|+..+++++++.+|+|...  ..  +....|+|+||++|
T Consensus         1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L   80 (192)
T cd04398           1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL   80 (192)
T ss_pred             CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence            8999999987555 8999999999999999999999999999999999999999987421  11  12245999999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |+|||+||+||+|.++|+.|+++.+..+  +++..++.++.+||+.|+.||.+|+.||++|+.+++.|+||++|||+|||
T Consensus        81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~  160 (192)
T cd04398          81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWG  160 (192)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHh
Confidence            9999999999999999999999987765  68899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |+|++++..    +..++..++.++++||+|+.+||
T Consensus       161 P~l~~~~~~----~~~~~~~~~~~~~~LI~~~~~iF  192 (192)
T cd04398         161 PTLMNAAPD----NAADMSFQSRVIETLLDNAYQIF  192 (192)
T ss_pred             hhhCCCCcc----chhhHHHHHHHHHHHHHHHHHhC
Confidence            999998542    46788999999999999999887

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=3.4e-37  Score=302.82  Aligned_cols=185  Identities=31%  Similarity=0.514  Sum_probs=159.6

Q ss_pred             ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLR  217 (625)
Q Consensus       138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr  217 (625)
                      ||.+|.+     .+++ .|.+|++||++ |+++|||||+||+..++++|++.+++|....++..++|+|+||++||+|||
T Consensus         1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR   73 (208)
T cd04392           1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG   73 (208)
T ss_pred             CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence            5666643     2334 67789999998 999999999999999999999999998654444456899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcC------------c--hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCcc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADL------------T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPN  283 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~------------~--~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~  283 (625)
                      +||+||+|+++|+.|+.+++.            .  +.++.+++.++.+||+.|+.+|++|+.||++|+++++.|+||+.
T Consensus        74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  153 (208)
T cd04392          74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSAD  153 (208)
T ss_pred             hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence            999999999999999887642            1  15578899999999999999999999999999999999999999


Q ss_pred             chhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137        284 SLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA  329 (625)
Q Consensus       284 nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~  329 (625)
                      |||+||||+|++++..+......++.....+|++||+|+.+||...
T Consensus       154 NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~  199 (208)
T cd04392         154 NLALLFTPHLICPRNLTPEDLHENAQKLNSIVTFMIKHSQKLFKAP  199 (208)
T ss_pred             HHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            9999999999998655454445677788999999999999999543

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=4.6e-37  Score=298.41  Aligned_cols=173  Identities=34%  Similarity=0.562  Sum_probs=157.6

Q ss_pred             CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137        148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE  227 (625)
Q Consensus       148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~  227 (625)
                      ....||.++.+|+.+|+++|+.+|||||++|+..+++++++.+++|.. ..+++.+|+|++|++||+|||+||+||+|++
T Consensus        13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~-~~~~~~~d~h~vaslLK~fLReLPePLi~~~   91 (193)
T cd04382          13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKT-VPNLSKVDIHVICGCLKDFLRSLKEPLITFA   91 (193)
T ss_pred             CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCC-CcccccCCHHHHHHHHHHHHHhCCCcCCCHH
Confidence            344899999999999999999999999999999999999999998752 2245667999999999999999999999999


Q ss_pred             hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCC--Cchh
Q psy10137        228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHF--PAQD  303 (625)
Q Consensus       228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~--~~~~  303 (625)
                      +|+.|+++.+..+  +++..++.++..||+.|+.||.||+.||++|++ ++.|+||+.|||+||||+||+.+..  +..+
T Consensus        92 ~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~~  170 (193)
T cd04382          92 LWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPMT  170 (193)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHHH
Confidence            9999999987664  677899999999999999999999999999999 9999999999999999999998543  3467


Q ss_pred             hHHhhHHHHHHHHHHHHhh
Q psy10137        304 ALSDISRQTLCIELIISEQ  322 (625)
Q Consensus       304 ~~~~~~~~~~~ve~lI~~~  322 (625)
                      .+.++..|.++||.||++.
T Consensus       171 ~~~~~~~~~~vve~Li~~~  189 (193)
T cd04382         171 ILQDTVRQPRVVERLLEIP  189 (193)
T ss_pred             HHHHhHHHHHHHHHHHhCC
Confidence            8999999999999999983

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=1.3e-36  Score=293.85  Aligned_cols=180  Identities=33%  Similarity=0.568  Sum_probs=164.1

Q ss_pred             cccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccCcChHHHHHHHHHHHH
Q psy10137        139 GVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYSVHILANLLKLFLR  217 (625)
Q Consensus       139 G~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~~d~~~va~~lK~fLr  217 (625)
                      |.+|+........||.+|.+|+.||+++|+.+|||||+||+..++++|++.|+.+. ...+..+.+|+|+||++||.|||
T Consensus         2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr   81 (184)
T cd04385           2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR   81 (184)
T ss_pred             CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence            67787777778899999999999999999999999999999999999999998853 22344567899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+||+|+++|+.|+.+.+..+  +++..++.++..||+.|+.+|.+|+.||++|+++++.|+|+++|||+||||+|+|
T Consensus        82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~  161 (184)
T cd04385          82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQ  161 (184)
T ss_pred             hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCC
Confidence            99999999999999999987655  7888999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhhHHhhHHHHHHHHHHHHhh
Q psy10137        296 QRHFPAQDALSDISRQTLCIELIISEQ  322 (625)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~ve~lI~~~  322 (625)
                      ++..    +..+....+++++.||+||
T Consensus       162 ~~~~----~~~~~~~~~~v~~~Li~~~  184 (184)
T cd04385         162 TDEH----SVGQTSHEVKVIEDLIDNY  184 (184)
T ss_pred             CCcc----chhHHHHHHHHHHHHHhcC
Confidence            8642    5667889999999999985

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=7.7e-37  Score=301.14  Aligned_cols=189  Identities=19%  Similarity=0.299  Sum_probs=163.9

Q ss_pred             ecccccccccCCC-Cccceeeechhhhhhcc--cccc----cccccCCCHHHHHHHHHHHhcCCCCCC---CccCcChHH
Q psy10137        138 FGVPLSQLSSSDG-KVPSLVDRLITTIELRG--IYTE----GIYRKSGIHSKIQELKTKIDEGKLPEL---ELEVYSVHI  207 (625)
Q Consensus       138 FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~g--l~~e----GIfR~sg~~~~v~~L~~~~~~g~~~~~---~~~~~d~~~  207 (625)
                      ||+||+.++..++ .||.+|.+|++||+++|  +..+    ||||+||+.+.+++||+.|++|.....   +++.+|+|+
T Consensus         1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~   80 (212)
T cd04399           1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST   80 (212)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence            8999999988765 89999999999999875  3333    999999999999999999999854332   245789999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhHHHHHHHhcC--------chHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcC-
Q psy10137        208 LANLLKLFLREMPEPLLTFEYYEEFLRAADL--------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN-  278 (625)
Q Consensus       208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~--------~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~N-  278 (625)
                      ||++||.|||+||+||+|+++|+.|.++...        .++++.+++.++.+||++|+.||++|+.||.+|++++..| 
T Consensus        81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~  160 (212)
T cd04399          81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGE  160 (212)
T ss_pred             HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999876421        2389999999999999999999999999999999987655 


Q ss_pred             --CCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        279 --RMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       279 --kMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                        +|+++|||+||||+|+|+.....  ...+...+..+++.||+|+.+||++
T Consensus       161 ~~kM~~~nLa~vfgp~llr~~~~~~--~~~~~~~~~~~~e~Li~~~~~iF~~  210 (212)
T cd04399         161 SEEEYADKLATSLSREILRPIIESL--LTIGDKHGYKFFRDLLTHKDQIFSE  210 (212)
T ss_pred             ccccCHHHHHHHhhhhhcCCCcccc--cccccHHHHHHHHHHHHhHHHhccc
Confidence              69999999999999999854332  3455688999999999999999975

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=1.4e-36  Score=295.25  Aligned_cols=183  Identities=27%  Similarity=0.477  Sum_probs=164.0

Q ss_pred             eeecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137        136 RVFGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL  212 (625)
Q Consensus       136 ~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l  212 (625)
                      ++||++|+++...+   ..||.++..|+.||+++|+++|||||++|+..+++++++.+++|....+. ..+|+|++|++|
T Consensus         1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~-~~~d~~~va~~l   79 (189)
T cd04393           1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLS-KEADVCSAASLL   79 (189)
T ss_pred             CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcc-ccCCHHHHHHHH
Confidence            47999999998753   38999999999999999999999999999999999999999998643322 238999999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCc---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLT---EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~---~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      |+|||+||+||+|++.|+.|+++.+..   ++++..++.++..||+.|+.+|.+|+.||++|+++++.|+||+.|||+||
T Consensus        80 K~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf  159 (189)
T cd04393          80 RLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF  159 (189)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence            999999999999999999999886532   37788999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137        290 APCILRQRHFPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      ||+||+.+.  ....+.+.....++++.||+|
T Consensus       160 ~P~l~~~~~--~~~~~~~~~~~~~~~~~li~~  189 (189)
T cd04393         160 GPDVFHVYT--DVEDMKEQEICSRIMAKLLEN  189 (189)
T ss_pred             cCceeCCCC--CcccHHHHHHHHHHHHHHhcC
Confidence            999999854  345677788889999999986

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=3.6e-36  Score=293.98  Aligned_cols=168  Identities=34%  Similarity=0.624  Sum_probs=150.9

Q ss_pred             cceeeechhhhhhcccccccccccCCCHHHHHHHHHH-HhcC--CCCCCCcc--CcChHHHHHHHHHHHHhCCCCCCChh
Q psy10137        153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTK-IDEG--KLPELELE--VYSVHILANLLKLFLREMPEPLLTFE  227 (625)
Q Consensus       153 P~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~-~~~g--~~~~~~~~--~~d~~~va~~lK~fLr~Lp~pLl~~~  227 (625)
                      +.+|.+|++||+++|+.+|||||+||+..+++++++. ++.+  ....+++.  .+|+|+||++||+|||+||+||+|++
T Consensus        29 ~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~~  108 (203)
T cd04374          29 FKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYE  108 (203)
T ss_pred             HHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCHH
Confidence            5578999999999999999999999999999999875 5654  22344443  47999999999999999999999999


Q ss_pred             hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhH
Q psy10137        228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL  305 (625)
Q Consensus       228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~  305 (625)
                      +|+.|+.+.+..+  +++.+++.++..||++|+.||++|+.||++|+++++.|+||+.|||+||||+|+|++.. ...++
T Consensus       109 ~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~-~~~~~  187 (203)
T cd04374         109 LHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEE-TVAAI  187 (203)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCc-cHHHH
Confidence            9999999988764  78899999999999999999999999999999999999999999999999999998643 34568


Q ss_pred             HhhHHHHHHHHHHHHh
Q psy10137        306 SDISRQTLCIELIISE  321 (625)
Q Consensus       306 ~~~~~~~~~ve~lI~~  321 (625)
                      .++..+..+|++||+|
T Consensus       188 ~~~~~~~~vve~LIeN  203 (203)
T cd04374         188 MDIKFQNIVVEILIEN  203 (203)
T ss_pred             HHhHHHHHHhhhHhcC
Confidence            8999999999999987

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=5.7e-36  Score=289.68  Aligned_cols=178  Identities=30%  Similarity=0.435  Sum_probs=158.2

Q ss_pred             ecccccccccC------CCCccceeeechhhhh-hcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHH
Q psy10137        138 FGVPLSQLSSS------DGKVPSLVDRLITTIE-LRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN  210 (625)
Q Consensus       138 FG~~L~~l~~~------~~~vP~vl~~~i~~ie-~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~  210 (625)
                      ||++|++++..      +..||.++..|++++. .+|+.+|||||++|+..+++++++.+|+|+...  ....|+|++|+
T Consensus         1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~--~~~~d~h~va~   78 (187)
T cd04389           1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL--SGLEDPHVPAS   78 (187)
T ss_pred             CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc--cccCCHHHHHH
Confidence            89999998742      2379999999999985 579999999999999999999999999986432  23469999999


Q ss_pred             HHHHHHHhCCCCCCChhhHHHHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcc--CcCCCCccchhhh
Q psy10137        211 LLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSLAIV  288 (625)
Q Consensus       211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~--~~NkMt~~nLaiv  288 (625)
                      +||.|||+||+||+|+++|+.|+.+.+.    .+.+++++.+||+.|+.+|.||+.||++|++++  +.||||++|||+|
T Consensus        79 lLK~fLReLpePli~~~~~~~~i~~~~~----~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv  154 (187)
T cd04389          79 LLKLWLRELEEPLIPDALYQQCISASED----PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV  154 (187)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHhhcC----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence            9999999999999999999999987643    235678899999999999999999999999754  7899999999999


Q ss_pred             ccccccccCCCCchhhHHhhHHHHHHHHHHHHh
Q psy10137        289 FAPCILRQRHFPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       289 f~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      |||+|+|++..++...++++.++..+++.||+|
T Consensus       155 f~P~l~~~~~~~~~~~~~~~~~~~~~~~~lI~~  187 (187)
T cd04389         155 FAPNILRCTSDDPRVIFENTRKEMSFLRTLIEH  187 (187)
T ss_pred             HccccCCCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence            999999997777778899999999999999986

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=9.6e-36  Score=289.65  Aligned_cols=177  Identities=31%  Similarity=0.467  Sum_probs=158.0

Q ss_pred             eecccccccccC------CCCccceeeechhhhhhcc-cccccccccCCCHHHHHHHHHHHhcCCCCCCC--ccCcChHH
Q psy10137        137 VFGVPLSQLSSS------DGKVPSLVDRLITTIELRG-IYTEGIYRKSGIHSKIQELKTKIDEGKLPELE--LEVYSVHI  207 (625)
Q Consensus       137 ~FG~~L~~l~~~------~~~vP~vl~~~i~~ie~~g-l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~--~~~~d~~~  207 (625)
                      +||++|++++..      +..||.+|.+|++||+++| +.+|||||++|+...++++++.+++|......  .+.+|+|+
T Consensus         1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~   80 (190)
T cd04400           1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT   80 (190)
T ss_pred             CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence            699999998753      3489999999999999987 79999999999999999999999997432211  13579999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCc-h--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccc
Q psy10137        208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLT-E--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS  284 (625)
Q Consensus       208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~-~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~n  284 (625)
                      ||++||.|||+||+||+|+++|+.|..+.+.. +  +++.+++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|
T Consensus        81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  160 (190)
T cd04400          81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN  160 (190)
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence            99999999999999999999999999988754 2  78899999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        285 LAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       285 Laivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      ||+||||+|+++.               .++..+|++|..||++
T Consensus       161 La~vf~P~L~~~~---------------~~~~~~~~~~~~~f~~  189 (190)
T cd04400         161 VCIVFSPTLNIPA---------------GIFVLFLTDFDCIFGG  189 (190)
T ss_pred             hhhhcCCCCCCCH---------------HHHHHHHHHHHHHcCC
Confidence            9999999998752               3788999999999976

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG1453|consensus

Probab=100.00  E-value=3.3e-36  Score=351.12  Aligned_cols=294  Identities=31%  Similarity=0.579  Sum_probs=230.6

Q ss_pred             CCcCeeEEehhhhhhHH-HHhhhcCCCccccCCCCcchhhhhhhhhhhhhhhhcccccccCCCeeceeEecc--CCcccc
Q psy10137         12 RDFPVTMGVNAFRGFMN-EFMNSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINI--PTACEI   88 (625)
Q Consensus        12 ~~~~~~~~~n~f~~~l~-~f~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~~~~~~~~~~~~H~F~~~~~~~--pt~C~~   88 (625)
                      ...|.....|+||+..+ ..|...  ++..++....|...++     +.  .+......+.| .|..+.+..  |+.|..
T Consensus       492 ~~~~g~~s~~l~r~~~~~~~~~~~--~~~~d~~~~~k~~~~~-----~~--~~~~~~~~~sg-~~~~~~r~~~~P~~c~~  561 (918)
T KOG1453|consen  492 SRSPGALSRGLFRVSGFSSTIESK--KNAFDRKGQSKKDASP-----NV--HKSKEVNLHSG-ALKHYLRSLRKPAPCRT  561 (918)
T ss_pred             cCCCCcccccccccCCccccccch--hhccCccccchhccCC-----Cc--cccccchhccC-cchhhhhcccCCccccc
Confidence            35777778888888874 233222  1222111111111111     01  11223445666 666666666  999999


Q ss_pred             cccccccccccccccccccccccccccccccccccccccCCcccccceeeccccccccc-CCCCccceeeechhhhhhcc
Q psy10137         89 CNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSS-SDGKVPSLVDRLITTIELRG  167 (625)
Q Consensus        89 C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L~~l~~-~~~~vP~vl~~~i~~ie~~g  167 (625)
                      |+.+.|+ +  +..|..|.++||++|..++...|+.....  +   ...||..|..++. ....||.++.+|+.+|+.+|
T Consensus       562 c~~~~~~-~--~~~c~~c~~~chkkc~~~~~~~~~~~~l~--~---~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~  633 (918)
T KOG1453|consen  562 CETYSWF-M--ELECELCRLVCHKKCLEALKSLCGHERLP--G---RPLFGVSLSELARYEPSTVPFILKKCLREIEAHL  633 (918)
T ss_pred             ccccchh-h--hcccceeeeeccccchhhccccCcccccc--c---cccccHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Confidence            9998554 3  39999999999999999999999977632  1   2299999999998 44599999999999999999


Q ss_pred             cccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--H----
Q psy10137        168 IYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--D----  241 (625)
Q Consensus       168 l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~----  241 (625)
                      +.++||||++|..++++.|...|+.|. ..+.+.+.|+|++++|+|+|||+||+||+++.+|+.|+.+.+...  +    
T Consensus       634 lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~  712 (918)
T KOG1453|consen  634 LRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRS  712 (918)
T ss_pred             hhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhccccccccccc
Confidence            999999999999999999999999976 557778899999999999999999999999999999999998832  4    


Q ss_pred             --HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHH
Q psy10137        242 --RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELII  319 (625)
Q Consensus       242 --~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI  319 (625)
                        .+..+..++..||++|+.+|++|+.||.||+.+++.|+|++.|||+||||||+|+++  +..++.++......+++++
T Consensus       713 ~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d--~~~~~~~~~~~~y~~~~~l  790 (918)
T KOG1453|consen  713 TEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPD--GTRDLTDMKDKNYPLAAQL  790 (918)
T ss_pred             cccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCC--CcchhhhhccchhhHHHhc
Confidence              788999999999999999999999999999999999999999999999999999964  3344444444444466666


Q ss_pred             HhhHHHh
Q psy10137        320 SEQLKKL  326 (625)
Q Consensus       320 ~~~~~if  326 (625)
                      .++..++
T Consensus       791 ~~~~~~~  797 (918)
T KOG1453|consen  791 PEYKITL  797 (918)
T ss_pred             chHHHHH
Confidence            6654444

>KOG4407|consensus

Probab=99.98  E-value=5.2e-33  Score=309.69  Aligned_cols=196  Identities=30%  Similarity=0.535  Sum_probs=176.4

Q ss_pred             ccceeeccccccccc--CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCC-CCCCc--cCc-ChH
Q psy10137        133 HGHRVFGVPLSQLSS--SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL-PELEL--EVY-SVH  206 (625)
Q Consensus       133 ~~~~~FG~~L~~l~~--~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~-~~~~~--~~~-d~~  206 (625)
                      .+.++|||+|.+...  .+..||.+|+.|+..+|.+||.+.||||++|+...|.+|++.++.++. ..++.  +.| |++
T Consensus      1153 ~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1153 APQPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred             CcCcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence            455699999998765  344899999999999999999999999999999999999999998632 12221  122 899


Q ss_pred             HHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccc
Q psy10137        207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS  284 (625)
Q Consensus       207 ~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~n  284 (625)
                      ||.++||.|||.|||||+|.++|..|+++.+..+  +|+..|+.+|..||++||+||++|+.||.+|+.|+++|||-+.|
T Consensus      1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprN 1312 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRN 1312 (1973)
T ss_pred             HHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            9999999999999999999999999999998776  99999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        285 LAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       285 Laivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      |||+|||+|+|++++.....+.+|..|.+|||.||.++.-.|.+
T Consensus      1313 LAi~FGPsiVRts~Dnm~tmVthM~dQckIVEtLI~~~dwfF~e 1356 (1973)
T KOG4407|consen 1313 LAIMFGPSIVRTSDDNMATMVTHMSDQCKIVETLIHYNDWFFDE 1356 (1973)
T ss_pred             eeEEeccceeccCCccHHHHhhcchhhhhHHHHHHhhhhheecc
Confidence            99999999999987777778899999999999999997666654

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.98  E-value=6.6e-32  Score=259.52  Aligned_cols=170  Identities=44%  Similarity=0.740  Sum_probs=155.9

Q ss_pred             CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHH
Q psy10137        151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE  230 (625)
Q Consensus       151 ~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~  230 (625)
                      .||.++..|+.||+++|+++|||||++|+..+++++++.+++|.........+|+|++|++||.|||+||+||+|.+.|+
T Consensus         2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~   81 (174)
T smart00324        2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE   81 (174)
T ss_pred             CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence            58999999999999999999999999999999999999999986444346788999999999999999999999999999


Q ss_pred             HHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhh
Q psy10137        231 EFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDI  308 (625)
Q Consensus       231 ~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~  308 (625)
                      .|+.+.+..+  ++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++... .....+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~-~~~~~~~  160 (174)
T smart00324       82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE-VASLKDI  160 (174)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-HHHHHHH
Confidence            9999887543  788999999999999999999999999999999999999999999999999999996533 2357889


Q ss_pred             HHHHHHHHHHHHh
Q psy10137        309 SRQTLCIELIISE  321 (625)
Q Consensus       309 ~~~~~~ve~lI~~  321 (625)
                      .....++++||+|
T Consensus       161 ~~~~~~i~~li~~  173 (174)
T smart00324      161 RHQNTVVETLIEN  173 (174)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999987

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.97  E-value=3.8e-31  Score=262.94  Aligned_cols=163  Identities=23%  Similarity=0.421  Sum_probs=138.0

Q ss_pred             CccceeeechhhhhhcccccccccccCCCHHH----HHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCCh
Q psy10137        151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSK----IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTF  226 (625)
Q Consensus       151 ~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~----v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~  226 (625)
                      .||.++.+|++||+++|+.+|||||++|+...    ++++++.+|+|....   ...|+|++|++||.|||+||+||+|+
T Consensus        49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~  125 (220)
T cd04380          49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPY  125 (220)
T ss_pred             ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCH
Confidence            79999999999999999999999999999999    999999999985332   56799999999999999999999999


Q ss_pred             hhHHHHHHHhcCchHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCch-hh
Q psy10137        227 EYYEEFLRAADLTEDRVSTLFSILK-TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ-DA  304 (625)
Q Consensus       227 ~~y~~~l~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~-~~  304 (625)
                      ++|+.|+.+....   ...+..++. .||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++..... ..
T Consensus       126 ~~y~~~~~~~~~~---~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~~~~  202 (220)
T cd04380         126 SLYERLLEAVANN---EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGGKER  202 (220)
T ss_pred             HHHHHHHHHhcCc---HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccchhHH
Confidence            9999999987322   234667888 999999999999999999999999999999999999999999999653332 11


Q ss_pred             HHhhHHHHHHHHHHH
Q psy10137        305 LSDISRQTLCIELII  319 (625)
Q Consensus       305 ~~~~~~~~~~ve~lI  319 (625)
                      ........++++..|
T Consensus       203 ~~~~~~~~~~i~~fl  217 (220)
T cd04380         203 RAERDRKRAFIEQFL  217 (220)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            223334444444443

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.97  E-value=2.3e-30  Score=247.08  Aligned_cols=167  Identities=43%  Similarity=0.737  Sum_probs=152.8

Q ss_pred             cceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHHHH
Q psy10137        153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEF  232 (625)
Q Consensus       153 P~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~  232 (625)
                      |.++..|+.||+++|+.++||||++|+..+++++++.++.|.... ....+|+|++|+++|.|||+||+||+|.+.|+.|
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~   79 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF   79 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence            789999999999999999999999999999999999999985432 4567899999999999999999999999999999


Q ss_pred             HHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhhHH
Q psy10137        233 LRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR  310 (625)
Q Consensus       233 l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~  310 (625)
                      +.+.+..+  .++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++...+ .....+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~-~~~~~~~~~  158 (169)
T cd00159          80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD-DELLEDIKK  158 (169)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc-HHHHHHhHH
Confidence            99987544  788999999999999999999999999999999999999999999999999999986533 455778899


Q ss_pred             HHHHHHHHHHh
Q psy10137        311 QTLCIELIISE  321 (625)
Q Consensus       311 ~~~~ve~lI~~  321 (625)
                      +..++++||.|
T Consensus       159 ~~~~~~~li~~  169 (169)
T cd00159         159 LNEIVEFLIEN  169 (169)
T ss_pred             HHHHHHHHHhC
Confidence            99999999975

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=99.97  E-value=1.9e-30  Score=251.58  Aligned_cols=165  Identities=20%  Similarity=0.322  Sum_probs=135.6

Q ss_pred             CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCC-CcCCcchhHHHHHHHHHHhcCCCCCCChhhH
Q psy10137        358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYY  436 (625)
Q Consensus       358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~-~~~~~d~~~va~lLK~flr~LpePLi~~~l~  436 (625)
                      |+.+...+-.+.. .+|+.+|||||++|+.++++++++.+|+|.+... +.+.+|+|+||++||.|||+||+||||.++|
T Consensus        18 IP~~v~~~i~~l~-~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepLip~~~~   96 (188)
T cd04383          18 IPLVVESCIRFIN-LYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERF   96 (188)
T ss_pred             CChHHHHHHHHHH-HcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            4444433333333 2589999999999999999999999999875422 2356799999999999999999999999999


Q ss_pred             HHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHH
Q psy10137        437 EEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESEL  514 (625)
Q Consensus       437 ~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~  514 (625)
                      +.|+.+.+..  ++++..++.++..||+.|+.+|+||+.||++|+++++.|+||++|||+||||+|++.+++...-....
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~~~~~~~~~  176 (188)
T cd04383          97 EDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQDQVSCQA  176 (188)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCCccHHHHHH
Confidence            9999987754  47889999999999999999999999999999999999999999999999999999876554333233


Q ss_pred             HHHHHHHHh
Q psy10137        515 AIHSKIQEL  523 (625)
Q Consensus       515 ~~~~~I~~l  523 (625)
                      .+..+++.+
T Consensus       177 ~~~~~~~~l  185 (188)
T cd04383         177 HVNELIKTI  185 (188)
T ss_pred             HHHHHHHHH
Confidence            444444433

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=99.97  E-value=2.7e-30  Score=249.88  Aligned_cols=134  Identities=38%  Similarity=0.682  Sum_probs=123.6

Q ss_pred             cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137        372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR  449 (625)
Q Consensus       372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~  449 (625)
                      .+|+.+|||||++|+.+++++|++.++.|.. .++.+++|+|+||++||.|||+||+||||+++|++|+.+.+..  .++
T Consensus        28 ~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~-~~~~~~~d~h~va~lLK~flReLPepLi~~~~~~~~~~~~~~~~~~~~  106 (186)
T cd04407          28 MHGLYTEGIYRKSGSANRMKELHQLLQADPE-NVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQ  106 (186)
T ss_pred             HcCCCCCceeecCCCHHHHHHHHHHHhcCCc-ccCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCHHHH
Confidence            3689999999999999999999999998853 3456678999999999999999999999999999999988764  367


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE  506 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~  506 (625)
                      +.+++.++..||+.|+.+|++|+.||++|+++++.|+|+++|||+||||+|+|+++.
T Consensus       107 ~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~  163 (186)
T cd04407         107 LQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPDS  163 (186)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCCC
Confidence            899999999999999999999999999999999999999999999999999998754

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>KOG2200|consensus

Probab=99.97  E-value=2.9e-30  Score=272.27  Aligned_cols=197  Identities=30%  Similarity=0.490  Sum_probs=175.4

Q ss_pred             cccccceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccCcChHH
Q psy10137        130 ARSHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYSVHI  207 (625)
Q Consensus       130 ~~~~~~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~~d~~~  207 (625)
                      +.+....+|||||..++...+ .+|.+|.+.+.||+++|++++||||+||.+.+|+.|++.++... ...+.++....|+
T Consensus       293 ~d~kd~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~D  372 (674)
T KOG2200|consen  293 VDGKDGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHD  372 (674)
T ss_pred             CccCCCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhH
Confidence            445677899999999998766 99999999999999999999999999999999999999998732 1237788889999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccch
Q psy10137        208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL  285 (625)
Q Consensus       208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nL  285 (625)
                      +|.+||+|||+||+||+|.++-+.|+.+.....  +++++++.+|-.||.+||++|+.|+.||++|+.+++.|+||+.||
T Consensus       373 vAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nl  452 (674)
T KOG2200|consen  373 VADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNL  452 (674)
T ss_pred             HHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhh
Confidence            999999999999999999999999999998776  899999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccCCC-----------------CchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        286 AIVFAPCILRQRHF-----------------PAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       286 aivf~P~Llr~~~~-----------------~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |+||||+||.....                 +....+.+......++..||.++...|
T Consensus       453 svcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf  510 (674)
T KOG2200|consen  453 SVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLF  510 (674)
T ss_pred             hhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999876211                 113346677788889999999987766

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=99.97  E-value=3.6e-30  Score=248.98  Aligned_cols=148  Identities=34%  Similarity=0.581  Sum_probs=128.9

Q ss_pred             CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHH
Q psy10137        358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE  437 (625)
Q Consensus       358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~  437 (625)
                      ++.+...+..+.. .+|+.+||+||++|+.+++++|++.+|.|.. ..+++++|+|+||++||.|||+||+||||.++|+
T Consensus        15 iP~ii~~~i~~l~-~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~-~~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~   92 (186)
T cd04406          15 VPLVVEKLINYIE-MHGLYTEGIYRKSGSTNKIKELRQGLDTDAN-SVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYE   92 (186)
T ss_pred             CCcHHHHHHHHHH-HhCCCCCceeeCCCcHHHHHHHHHHHccCCC-CCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence            4444333333332 3689999999999999999999999998753 3456678999999999999999999999999999


Q ss_pred             HHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        438 EFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       438 ~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      .|+++....  .+++..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++.++..
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~~~  164 (186)
T cd04406          93 EFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTT  164 (186)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCCCC
Confidence            999998764  3678899999999999999999999999999999999999999999999999999987644

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=99.96  E-value=4.6e-30  Score=251.31  Aligned_cols=153  Identities=27%  Similarity=0.457  Sum_probs=132.2

Q ss_pred             cCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137        355 LKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFE  434 (625)
Q Consensus       355 ~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~  434 (625)
                      ...++.+...+-.+.. .+|+++|||||++|+..++++|++.+++|.. .++++++|+|+||++||.|||+||+||||++
T Consensus        13 ~~~vP~iv~~ci~~i~-~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~lLK~fLReLPePLi~~~   90 (200)
T cd04408          13 PEEVPFVVVRCTAEIE-NRALGVQGIYRISGSKARVEKLCQAFENGRD-LVDLSGHSPHDITSVLKHFLKELPEPVLPFQ   90 (200)
T ss_pred             CCCCChHHHHHHHHHH-HcCCCCcceeeCCCcHHHHHHHHHHHhcCCC-ccCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence            3445555555554443 3699999999999999999999999999864 3455678999999999999999999999999


Q ss_pred             hHHHHHHHhcc--------------chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccccccccc
Q psy10137        435 YYEEFLRAADL--------------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL  500 (625)
Q Consensus       435 l~~~~~~~~~~--------------~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~l  500 (625)
                      +|+.|+++++.              .++++.+++.++..||+.|+.+|.||+.||++|+++++.|+|++.|||+||||+|
T Consensus        91 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~L  170 (200)
T cd04408          91 LYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTL  170 (200)
T ss_pred             HHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhcccc
Confidence            99999987642              1357899999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC
Q psy10137        501 KTKIDEGKL  509 (625)
Q Consensus       501 l~~~~~~~~  509 (625)
                      |+++.+...
T Consensus       171 l~~~~~~~~  179 (200)
T cd04408         171 LRPLVGGDV  179 (200)
T ss_pred             CCCCCCCch
Confidence            998876543

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=99.96  E-value=5.7e-30  Score=251.65  Aligned_cols=133  Identities=32%  Similarity=0.444  Sum_probs=121.8

Q ss_pred             cccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--------
Q psy10137        374 QIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--------  445 (625)
Q Consensus       374 ~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--------  445 (625)
                      |+.+|||||++|+.+++++|++.+|+|...++...++|+|+||++||.|||+||+||||.++|+.|+.+++.        
T Consensus        23 gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~y~~~~~i~~l~~~~~~~~  102 (208)
T cd04392          23 NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGN  102 (208)
T ss_pred             CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhhccccccc
Confidence            889999999999999999999999999876666567899999999999999999999999999999876542        


Q ss_pred             ------chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137        446 ------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE  506 (625)
Q Consensus       446 ------~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~  506 (625)
                            .+.++.+++.++..||+.||.+|+||+.||++|+++++.|+||+.|||+||||+|++++..
T Consensus       103 ~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~  169 (208)
T cd04392         103 KTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNL  169 (208)
T ss_pred             ccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCCC
Confidence                  1356789999999999999999999999999999999999999999999999999997653

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=99.96  E-value=9.5e-30  Score=253.43  Aligned_cols=152  Identities=22%  Similarity=0.278  Sum_probs=130.6

Q ss_pred             CCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCC--CCCCcCCcchhHHHHHHHHHHhcCCCCCCCh
Q psy10137        356 KDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKL--PELELEVYSVHILANLLKLFLREMPEPLLTF  433 (625)
Q Consensus       356 ~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~--~~~~~~~~d~~~va~lLK~flr~LpePLi~~  433 (625)
                      +.|+.+...+..+.. -+|+.+|||||++|+..++++|++.||++..  ..++++++|+|+||++||+|||+||+||||.
T Consensus        30 ~~IP~iv~~ci~~l~-~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReLPePLip~  108 (225)
T cd04396          30 GYIPVVVAKCGVYLK-ENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPL  108 (225)
T ss_pred             CCCChHHHHHHHHHH-HCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhCCCccCCH
Confidence            345555545544443 3689999999999999999999999999752  3466678899999999999999999999999


Q ss_pred             hhHHHHHHHhcc-------------------chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccc
Q psy10137        434 EYYEEFLRAADL-------------------TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI  494 (625)
Q Consensus       434 ~l~~~~~~~~~~-------------------~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~  494 (625)
                      ++|++|..+...                   .++++..++.++.+||+.|+.+|.||+.||++|+++++.||||++|||+
T Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  188 (225)
T cd04396         109 DLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAA  188 (225)
T ss_pred             HHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhhhe
Confidence            999999876431                   2467889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCC
Q psy10137        495 VFAQELKTKIDEGK  508 (625)
Q Consensus       495 ~faP~ll~~~~~~~  508 (625)
                      ||||+|++++++..
T Consensus       189 vfaP~Ll~~~~~~~  202 (225)
T cd04396         189 IFQPGILSHPDHEM  202 (225)
T ss_pred             eeccccCCCCcccc
Confidence            99999999876543

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=99.96  E-value=8.6e-30  Score=246.45  Aligned_cols=151  Identities=25%  Similarity=0.362  Sum_probs=131.6

Q ss_pred             CCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhh
Q psy10137        356 KDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEY  435 (625)
Q Consensus       356 ~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l  435 (625)
                      .+|+.+...+-.+..+ +|+.+||+||++|+..+++++++.+++|...++...++|+|+||++||+|||+||+||||+++
T Consensus        13 ~~IP~~l~~~i~~l~~-~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLreLPePlip~~~   91 (185)
T cd04373          13 KPIPIFLEKCVEFIEA-TGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSM   91 (185)
T ss_pred             CCCCcHHHHHHHHHHH-cCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHhcCCchhccHHH
Confidence            3444443333333333 789999999999999999999999999876666556779999999999999999999999999


Q ss_pred             HHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        436 YEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       436 ~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      |+.|.++....  ++++..++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+++..++
T Consensus        92 ~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~~  165 (185)
T cd04373          92 HLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFTS  165 (185)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCCC
Confidence            99999988764  3688999999999999999999999999999999999999999999999999999976553

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=99.96  E-value=7.6e-30  Score=248.94  Aligned_cols=135  Identities=27%  Similarity=0.576  Sum_probs=122.6

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCC-CCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGK-LPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~-~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~  448 (625)
                      +|+.+|||||++|+.++++++++.+|++. ..+++...+ |+|+||++||.|||+||+||||.++|+.|+++.+..  ++
T Consensus        30 ~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~  109 (194)
T cd04372          30 RGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDE  109 (194)
T ss_pred             cCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHH
Confidence            68999999999999999999999999853 344443333 899999999999999999999999999999988764  47


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +++.++.++..||+.|+.+|.||+.||++|+++++.||||+.|||+||||+|++++++.
T Consensus       110 ~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~~  168 (194)
T cd04372         110 RLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDS  168 (194)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999987754

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=99.96  E-value=1.2e-29  Score=246.23  Aligned_cols=135  Identities=36%  Similarity=0.580  Sum_probs=124.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCc-CCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELEL-EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~-~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~  449 (625)
                      +|+.+||+||++|+.+++++|+..+|.|...+++. ...|+|+||++||.|||+||+||||+++|+.|+++.+..  +++
T Consensus        30 ~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~  109 (187)
T cd04403          30 RGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQR  109 (187)
T ss_pred             hCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHH
Confidence            58999999999999999999999999987654432 345999999999999999999999999999999988764  478


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +.+++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+|++.+.
T Consensus       110 i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~  167 (187)
T cd04403         110 VSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQET  167 (187)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999987665

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=99.96  E-value=1.3e-29  Score=244.71  Aligned_cols=145  Identities=30%  Similarity=0.425  Sum_probs=130.8

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.+||+||++|+.+++++|++.+++|...  +++++|+|+||++||.|||+||+||||.++|+.|.++++..  ++++
T Consensus        34 ~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~--~~~~~d~h~va~lLK~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~  111 (182)
T cd04381          34 HGMKCEGIYKVSGIKSKVDELKAAYNRRESP--NLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAERE  111 (182)
T ss_pred             hCCCCCceeecCCcHHHHHHHHHHHcCCCCC--CccccChHHHHHHHHHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHH
Confidence            5899999999999999999999999998754  45678999999999999999999999999999999988754  4789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHHHHhHhhcc
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKID  528 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I~~l~~~~d  528 (625)
                      .+++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+.         +...+...|.++.+.|.
T Consensus       112 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~---------~~~~~~~li~~~~~if~  180 (182)
T cd04381         112 QELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQI---------SNRLLYALLTHCQELFG  180 (182)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccC---------cHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999986         34566666776666654

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=99.96  E-value=1.7e-29  Score=244.39  Aligned_cols=132  Identities=23%  Similarity=0.372  Sum_probs=120.0

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~  449 (625)
                      +|+.++||||++|+.+ +.+|++.+|++. ..++++.+|+|+||++||.|||+||+||||+++|++|+++++.   .+++
T Consensus        29 ~GL~~eGIYRvsgs~~-~~~lk~~~d~~~-~~~d~~~~dv~~va~~LK~ylReLPePLip~~~y~~fi~~~~~~~~~~~~  106 (200)
T cd04388          29 KGLESSTLYRTQSSSS-LTELRQILDCDA-ASVDLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEY  106 (200)
T ss_pred             hCCCCCceeeCCCccH-HHHHHHHHhcCC-CCCCcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHccCCHHHH
Confidence            5999999999999875 789999999963 3456678899999999999999999999999999999998753   3578


Q ss_pred             HHHHHHHHh--hCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137        450 VSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE  506 (625)
Q Consensus       450 ~~~~~~li~--~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~  506 (625)
                      ++.++.++.  .||+.|+.+|+||+.||++|+++++.|+||++|||+||||+||+++.+
T Consensus       107 ~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~  165 (200)
T cd04388         107 AQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPA  165 (200)
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcc
Confidence            899999997  899999999999999999999999999999999999999999998754

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=99.96  E-value=1.8e-29  Score=247.77  Aligned_cols=135  Identities=33%  Similarity=0.484  Sum_probs=124.5

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc-hHHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRVS  451 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~-~~~~~  451 (625)
                      +|+++||+||++|+.+++++|++.+|+|....++ +.+|+|+||++||.|||+||+||+|+++|+.|+.+.... ++++.
T Consensus        23 ~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~~~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~~~~~~~~  101 (206)
T cd04376          23 HGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALLEPDEQLE  101 (206)
T ss_pred             cCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHH
Confidence            5899999999999999999999999999866554 457999999999999999999999999999999988764 57889


Q ss_pred             HHHHHHhhCChhhHHHHHHHHHHHHHHHhccc-----------ccCCcccccccccccccccccCCCC
Q psy10137        452 TLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----------ANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       452 ~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~-----------~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      +++.++..||+.|+.+|.||+.||++|+++++           .|+||++|||+||||+|++++..+.
T Consensus       102 ~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~  169 (206)
T cd04376         102 ALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGE  169 (206)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCCCCcc
Confidence            99999999999999999999999999999986           7999999999999999999876543

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG1451|consensus

Probab=99.96  E-value=4.9e-30  Score=268.95  Aligned_cols=174  Identities=33%  Similarity=0.570  Sum_probs=158.0

Q ss_pred             ceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhc-CCCCCCC---ccCcChHHHHHHHHHHHHhCCCCCCChhhH
Q psy10137        154 SLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE-GKLPELE---LEVYSVHILANLLKLFLREMPEPLLTFEYY  229 (625)
Q Consensus       154 ~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~-g~~~~~~---~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y  229 (625)
                      .+|.+||..||.+|++++|+||..|...+|++|...+-. ......+   ++.||+-+|++.||.|||.||+||+|++++
T Consensus       390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH  469 (812)
T KOG1451|consen  390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH  469 (812)
T ss_pred             HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence            578899999999999999999999999999999875543 2222333   256899999999999999999999999999


Q ss_pred             HHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHh
Q psy10137        230 EEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD  307 (625)
Q Consensus       230 ~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~  307 (625)
                      ..|+.|++.++  -|+.+++.++.+||.-||.+|+.||+||.+|+.|+..|.||..||++||||+|+|+.. ...++++|
T Consensus       470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE-ETVAAiMd  548 (812)
T KOG1451|consen  470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE-ETVAAIMD  548 (812)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH-HHHHHHHc
Confidence            99999999887  7999999999999999999999999999999999999999999999999999999964 46688999


Q ss_pred             hHHHHHHHHHHHHhhHHHhhh
Q psy10137        308 ISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       308 ~~~~~~~ve~lI~~~~~if~d  328 (625)
                      +..|+-+||.||+||.+||.-
T Consensus       549 IKFQNIVVEILIEnyeKIF~t  569 (812)
T KOG1451|consen  549 IKFQNIVVEILIENYEKIFKT  569 (812)
T ss_pred             chhhhhhHHHHHhhhHHHhcC
Confidence            999999999999999999943

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=99.96  E-value=3.1e-29  Score=244.34  Aligned_cols=151  Identities=28%  Similarity=0.483  Sum_probs=128.2

Q ss_pred             CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCc--CCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137        357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELEL--EVYSVHILANLLKLFLREMPEPLLTFE  434 (625)
Q Consensus       357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~--~~~d~~~va~lLK~flr~LpePLi~~~  434 (625)
                      .++.+...+..+.. .+|+ .|||||++|+.+++++|++.+|+|...++..  ...|+|+||++||.|||+||+||||++
T Consensus        17 ~iP~il~~~i~~l~-~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLPePLi~~~   94 (195)
T cd04384          17 DVPQVLKSCTEFIE-KHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQ   94 (195)
T ss_pred             CCChHHHHHHHHHH-HcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHHHHHHHhCCCccCCHH
Confidence            34444433333332 2455 5899999999999999999999997655432  345999999999999999999999999


Q ss_pred             hHHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137        435 YYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL  509 (625)
Q Consensus       435 l~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~  509 (625)
                      +|+.|+++.+..  +++++.++.++.+||+.|+.+|+||+.||++|+++++.||||++|||+||||+|++++.....
T Consensus        95 ~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~~~~  171 (195)
T cd04384          95 LYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESA  171 (195)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCccccc
Confidence            999999998753  478899999999999999999999999999999999999999999999999999998865544

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG1450|consensus

Probab=99.96  E-value=1.2e-29  Score=275.66  Aligned_cols=192  Identities=29%  Similarity=0.499  Sum_probs=170.4

Q ss_pred             ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCC-CccCcChHHHHHHH
Q psy10137        135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL-ELEVYSVHILANLL  212 (625)
Q Consensus       135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~-~~~~~d~~~va~~l  212 (625)
                      ..+||++|+.++...+ .||.+|..|++.||.+|++.+||||++|+...|++|+..+|......+ +....|+|+|+++|
T Consensus       454 ~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~gal  533 (650)
T KOG1450|consen  454 DKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGAL  533 (650)
T ss_pred             CcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHHH
Confidence            5799999999998555 999999999999999999999999999999999999999995321111 22224899999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |.|||+||+||++..+...|..+....+  .+....+.++..||.+|+.||++|++||++|..|++.|||+.+|||||||
T Consensus       534 K~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfg  613 (650)
T KOG1450|consen  534 KTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFG  613 (650)
T ss_pred             HHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEec
Confidence            9999999999999999999999998765  78899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137        291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA  327 (625)
Q Consensus       291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~  327 (625)
                      |+|+.+... ......++.++.++|+.||++...+|+
T Consensus       614 pTl~~~~~~-~~~~a~~~~~~~~ivq~lle~~~~~f~  649 (650)
T KOG1450|consen  614 PTLIKPEQE-TSSEAIHSTYQSQIVQLLLENVSSAFG  649 (650)
T ss_pred             ccccccccc-ccchhhHHhHHHHHHHHHHHhhHhhcc
Confidence            999997432 334456788999999999999887774

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=99.96  E-value=3.6e-29  Score=245.42  Aligned_cols=136  Identities=29%  Similarity=0.408  Sum_probs=120.9

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--h-
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E-  447 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~-  447 (625)
                      +|+.+|||||++|+.+++++|++.+|++.. .+++.+.+ |+|+||++||.|||+||+||||+++|+.|++++...  + 
T Consensus        32 ~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~  111 (207)
T cd04379          32 RGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPND  111 (207)
T ss_pred             cCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccChhh
Confidence            689999999999999999999999999753 34444333 899999999999999999999999999999987642  1 


Q ss_pred             --HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       448 --~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                        .+...++.++..||+.|+.+|+||+.||++|+++++.||||++|||+||||+||++++...
T Consensus       112 ~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~~  174 (207)
T cd04379         112 VQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEFS  174 (207)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCcccc
Confidence              3456788899999999999999999999999999999999999999999999999887664

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=99.96  E-value=3.4e-29  Score=243.26  Aligned_cols=134  Identities=31%  Similarity=0.481  Sum_probs=122.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.+|||||++|+.++++++++.+++|... .+++.+|+|+||++||.|||+||+||||.++|+.|+++++..  ++++
T Consensus        31 ~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~~~d~h~vaslLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~  109 (193)
T cd04382          31 RGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSR  109 (193)
T ss_pred             cCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccccCCHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHcCCHHHHH
Confidence            6899999999999999999999999988643 234566999999999999999999999999999999998764  4678


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      ..++.++..||+.|+.+|.||+.||++|++ ++.|+||++|||+||||+||+.+..+.
T Consensus       110 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~  166 (193)
T cd04382         110 AALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP  166 (193)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc
Confidence            899999999999999999999999999999 999999999999999999999775543

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=99.96  E-value=1.7e-29  Score=246.00  Aligned_cols=150  Identities=30%  Similarity=0.440  Sum_probs=130.1

Q ss_pred             CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhh
Q psy10137        357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEY  435 (625)
Q Consensus       357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l  435 (625)
                      .|+.+...+..+..+ +|+.+|||||++|+.+++++|++.+|+|... ..+.+.+|+|+||++||.|||+||+||||+++
T Consensus        15 ~IP~iv~~ci~~l~~-~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPePLip~~~   93 (196)
T cd04387          15 KVPYIVRQCVEEVER-RGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDEL   93 (196)
T ss_pred             CCChHHHHHHHHHHH-hCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence            355555444444433 5899999999999999999999999998643 23456779999999999999999999999999


Q ss_pred             HHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        436 YEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       436 ~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      |+.|+++....  ++++.+++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++...
T Consensus        94 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~  167 (196)
T cd04387          94 YPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKE  167 (196)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCccc
Confidence            99999987654  4678899999999999999999999999999999999999999999999999999987644

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=99.96  E-value=3.7e-29  Score=241.94  Aligned_cols=150  Identities=29%  Similarity=0.397  Sum_probs=129.6

Q ss_pred             CCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137        356 KDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLLTFE  434 (625)
Q Consensus       356 ~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~~d~~~va~lLK~flr~LpePLi~~~  434 (625)
                      ..++.+...+-.+.. .+|++++|+||.+|+.+++++|++.++.+.. ..+..+.+|+|+||++||.|||+||+||||++
T Consensus        13 ~~iP~~v~~~i~~l~-~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~pLi~~~   91 (184)
T cd04385          13 NDIPVIVDKCIDFIT-QHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSE   91 (184)
T ss_pred             CCCChHHHHHHHHHH-HhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence            344444333333332 3689999999999999999999999998652 33456778999999999999999999999999


Q ss_pred             hHHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137        435 YYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE  506 (625)
Q Consensus       435 l~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~  506 (625)
                      +|+.|+++.+..  ++++..++.++..||+.|+.+|.+|+.||++|+++++.|+|+++|||+||||+||+++++
T Consensus        92 ~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~  165 (184)
T cd04385          92 LHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH  165 (184)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc
Confidence            999999998764  478899999999999999999999999999999999999999999999999999998765

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=99.96  E-value=5.6e-29  Score=244.04  Aligned_cols=134  Identities=30%  Similarity=0.534  Sum_probs=122.4

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc----chH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL----TED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~----~~~  448 (625)
                      +|+++||+||++|+.+++++|++.+|+|...+++ ..+|+|+||++||.|||+||+||+|.+.|+.|+.+.+.    .++
T Consensus        36 ~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~  114 (199)
T cd04390          36 HGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEK  114 (199)
T ss_pred             cCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHH
Confidence            5899999999999999999999999999866554 45799999999999999999999999999999988654    235


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++..++.++..||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+|+|+..++
T Consensus       115 ~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~~  173 (199)
T cd04390         115 GLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVED  173 (199)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCCC
Confidence            67889999999999999999999999999999999999999999999999999976543

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=99.96  E-value=4.4e-29  Score=244.01  Aligned_cols=135  Identities=32%  Similarity=0.534  Sum_probs=120.3

Q ss_pred             ccccCCCCCCCCcccchHHHHHHH-hccCC--CCCCCc--CCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc-
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTK-IDEGK--LPELEL--EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-  446 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~-l~~~~--~~~~~~--~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~-  446 (625)
                      +|+.+|||||++|+.++++++++. ++.+.  ..++++  +.+|+|+||++||+|||+||+||||+++|+.|+.+++.. 
T Consensus        42 ~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~~~  121 (203)
T cd04374          42 RGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFINAAKSEN  121 (203)
T ss_pred             cCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhCCC
Confidence            589999999999999999999875 66552  223333  357999999999999999999999999999999998764 


Q ss_pred             -hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       447 -~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                       ++++.+++.++..||+.|+.+|++|+.||++|+++++.|||+++|||+||||+|++++.+.
T Consensus       122 ~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~  183 (203)
T cd04374         122 LESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET  183 (203)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc
Confidence             4789999999999999999999999999999999999999999999999999999987653

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=99.96  E-value=3.3e-29  Score=248.38  Aligned_cols=135  Identities=24%  Similarity=0.382  Sum_probs=123.6

Q ss_pred             cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHH
Q psy10137        372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDR  449 (625)
Q Consensus       372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~  449 (625)
                      .+|+.+|||||++|+.+++++|++.+|++.. ..+++.+++|+||++||+|||+||+||||.++|+.|+.+.+.  .+++
T Consensus        33 ~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~-~~~~~~~~~~~va~lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~  111 (220)
T cd04375          33 NNALDQVGLFRKSGVKSRIQKLRSMIESSTD-NVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQR  111 (220)
T ss_pred             HhCCCccceeecCCcHHHHHHHHHHHhcCCC-ccCcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHH
Confidence            4689999999999999999999999998743 235567799999999999999999999999999999998765  3578


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +++++.++..||++||.+|++|+.||++|+++++.|+||++|||+||||+||+.....
T Consensus       112 ~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~L~~~~~~~  169 (220)
T cd04375         112 LEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNTSR  169 (220)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhhcCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999987654

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=99.96  E-value=7.7e-29  Score=243.73  Aligned_cols=157  Identities=29%  Similarity=0.464  Sum_probs=133.2

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~  449 (625)
                      +|+.+||+||++|+.++++++++.+|+|... +.....+|+|+||++||.|||+||+||+|.++|+.|+.+++..  +++
T Consensus        34 ~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~  113 (203)
T cd04386          34 TGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDER  113 (203)
T ss_pred             cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHH
Confidence            5889999999999999999999999998743 2333456999999999999999999999999999999998764  368


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc--------hhHHHHHHHHH
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP--------ESELAIHSKIQ  521 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~--------~~~~~~~~~I~  521 (625)
                      +..++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++.++...        .....+...|.
T Consensus       114 ~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~  193 (203)
T cd04386         114 LQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIIS  193 (203)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999988764221        12334445555


Q ss_pred             HhHhhccc
Q psy10137        522 ELKTKIDE  529 (625)
Q Consensus       522 ~l~~~~d~  529 (625)
                      ++...|++
T Consensus       194 ~~~~iF~~  201 (203)
T cd04386         194 HADWFFPG  201 (203)
T ss_pred             hHHHhCCC
Confidence            55555544

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=99.96  E-value=6.7e-29  Score=243.89  Aligned_cols=134  Identities=33%  Similarity=0.537  Sum_probs=122.5

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc------
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT------  446 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~------  446 (625)
                      +|+.+|||||++|+.+++++|++.+++|.. .++++++|+|+||++||+|||+||+||+|+++|+.|+.++...      
T Consensus        30 ~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~-~~~~~~~~~h~va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~e~  108 (203)
T cd04378          30 RALGVQGIYRVSGSKARVEKLCQAFENGKD-LVELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEE  108 (203)
T ss_pred             cCCCCccceeCCCcHHHHHHHHHHHhcCCC-ccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccc
Confidence            599999999999999999999999999863 3456678999999999999999999999999999999876421      


Q ss_pred             ----------hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        447 ----------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       447 ----------~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                                .+++..++.++..||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+||+++.+.
T Consensus       109 ~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P~Ll~~~~~~  179 (203)
T cd04378         109 DKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGD  179 (203)
T ss_pred             cccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhccccCCCCCCC
Confidence                      2467899999999999999999999999999999999999999999999999999988764

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=99.96  E-value=8.3e-29  Score=241.26  Aligned_cols=133  Identities=30%  Similarity=0.440  Sum_probs=123.8

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+..||+||++|+.++++++++.+|+|...  +++++|+|++|++||+|||+||+||+|++.|+.|+.+++..  ++++
T Consensus        29 ~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i  106 (192)
T cd04402          29 KGPSTEGIFRRSANAKACKELKEKLNSGVEV--DLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKI  106 (192)
T ss_pred             hCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC--CCccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHH
Confidence            4789999999999999999999999998754  45678999999999999999999999999999999987754  4688


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ..++.++.+||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+||+++.+.
T Consensus       107 ~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~  163 (192)
T cd04402         107 AELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASS  163 (192)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCcc
Confidence            999999999999999999999999999999999999999999999999999988764

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4269|consensus

Probab=99.96  E-value=2.4e-29  Score=274.28  Aligned_cols=185  Identities=33%  Similarity=0.510  Sum_probs=155.8

Q ss_pred             ccccceeecccccccc----cCC-CCccceeeechhhhh-hcccccccccccCCCHHHHHHHHHHHhcCCCCCC--CccC
Q psy10137        131 RSHGHRVFGVPLSQLS----SSD-GKVPSLVDRLITTIE-LRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL--ELEV  202 (625)
Q Consensus       131 ~~~~~~~FG~~L~~l~----~~~-~~vP~vl~~~i~~ie-~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~--~~~~  202 (625)
                      ......+||.++...+    ..+ .++|.||.+|++||| .||+..|||||++|++..|+.|++.||.|-..++  ..+.
T Consensus       893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E  972 (1112)
T KOG4269|consen  893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE  972 (1112)
T ss_pred             cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence            3455679996655433    233 389999999999999 7999999999999999999999999999721222  2356


Q ss_pred             cChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q psy10137        203 YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM  280 (625)
Q Consensus       203 ~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkM  280 (625)
                      .|||+|||+||.|||+||+||++-+.|..|.......+  .+.-.+..+|.+||++|..++.+|+.||.||+.++.+|||
T Consensus       973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen  973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred             ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence            79999999999999999999999999999999988776  6677899999999999999999999999999999999999


Q ss_pred             CccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        281 TPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       281 t~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      +.+||++||||+|.+|..               +...+|-|+..||.|..
T Consensus      1053 nlrNlciVFsPTLniPse---------------~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPSE---------------IESKLILNYDHIFTDVM 1087 (1112)
T ss_pred             cccceeeeecccccCcHH---------------hhhhhccchhhhhccch
Confidence            999999999999999742               23345666666665443

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=99.96  E-value=9.9e-29  Score=244.38  Aligned_cols=135  Identities=27%  Similarity=0.360  Sum_probs=122.9

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.+|||||++|+..++++|++.+|+|.....+++.+++|+||++||.|||+||+||+|.++|+.|+.+.+..  +++.
T Consensus        41 ~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~  120 (213)
T cd04397          41 MDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERK  120 (213)
T ss_pred             cCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHH
Confidence            58999999999999999999999999987555566677999999999999999999999999999999987753  4678


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhccc-----ccCCcccccccccccccccccCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEE-----ANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~-----~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ..++.++..||+.|+.+|+||+.||++|+.++.     .||||++|||+||||+|++++.+.
T Consensus       121 ~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~~  182 (213)
T cd04397         121 RVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTDN  182 (213)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCCC
Confidence            889999999999999999999999999998764     599999999999999999987665

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=99.96  E-value=9.3e-29  Score=243.93  Aligned_cols=149  Identities=30%  Similarity=0.451  Sum_probs=126.9

Q ss_pred             CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhH
Q psy10137        357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYY  436 (625)
Q Consensus       357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~  436 (625)
                      .|+.+...+-.+.. .+|+.+|||||++|+.+++++|++.||+|.. .++.+++|+|+||++||.|||+||+||||.++|
T Consensus        15 ~iP~il~~ci~~ie-~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~~LK~fLReLPePLi~~~~~   92 (211)
T cd04409          15 GIPFIIKKCTSEIE-SRALCLKGIYRVNGAKSRVEKLCQAFENGKD-LVELSELSPHDISNVLKLYLRQLPEPLILFRLY   92 (211)
T ss_pred             CCCcHHHHHHHHHH-HcCCCCCCeeECCCcHHHHHHHHHHHHcCCC-ccccccCCHHHHHHHHHHHHHhCCCcccCHHHH
Confidence            34544444444432 3699999999999999999999999999874 245567899999999999999999999999999


Q ss_pred             HHHHHHhccc------------------------hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccc
Q psy10137        437 EEFLRAADLT------------------------EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL  492 (625)
Q Consensus       437 ~~~~~~~~~~------------------------~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL  492 (625)
                      +.|++++...                        +.++.+++.++..||+.|+.+|+||+.||++|+++++.|+||++||
T Consensus        93 ~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL  172 (211)
T cd04409          93 NEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNL  172 (211)
T ss_pred             HHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHHh
Confidence            9999876421                        0135688999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCC
Q psy10137        493 AIVFAQELKTKIDEG  507 (625)
Q Consensus       493 a~~faP~ll~~~~~~  507 (625)
                      |+||||+|++++.+.
T Consensus       173 Aivf~P~Llrp~~~~  187 (211)
T cd04409         173 GIIFGPTLIRPRPTD  187 (211)
T ss_pred             hhhccccccCCCCCC
Confidence            999999999987554

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=99.96  E-value=1.9e-28  Score=238.31  Aligned_cols=135  Identities=24%  Similarity=0.348  Sum_probs=123.9

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~  449 (625)
                      +|+..||+||++|+..+++++++.+|+|...++. ..+|+|++|++||+|||+||+||||.+.|+.|+++++.   .+++
T Consensus        34 ~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~-~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~  112 (189)
T cd04393          34 HGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLS-KEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEF  112 (189)
T ss_pred             cCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHccChHHH
Confidence            6999999999999999999999999999765544 34799999999999999999999999999999998754   3467


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      +..++.++..||+.|+.+|.||+.||++|+++++.|+||+.|||+||||+||+.+.+..
T Consensus       113 ~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~~~  171 (189)
T cd04393         113 GRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTDVE  171 (189)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCCcc
Confidence            88999999999999999999999999999999999999999999999999999877644

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=99.96  E-value=1.4e-28  Score=243.96  Aligned_cols=135  Identities=28%  Similarity=0.426  Sum_probs=124.4

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~  449 (625)
                      +|+.+|||||++|+.+++++|++.++++... .++++.+|+|+||++||.|||+||+||+|.++|+.|..+.+.+  +++
T Consensus        36 ~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~  115 (216)
T cd04391          36 RGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQ  115 (216)
T ss_pred             cCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHH
Confidence            6899999999999999999999999987542 5667778999999999999999999999999999999987764  367


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +.+++.++..||+.|+.+|+||+.||++|++|++.||||++|||+||||+||++...+
T Consensus       116 ~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~  173 (216)
T cd04391         116 LQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKH  173 (216)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999976644

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=99.96  E-value=1.8e-28  Score=237.69  Aligned_cols=134  Identities=44%  Similarity=0.737  Sum_probs=124.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.++|+||.+|+.++++++++.+|+|. ..++++.+|+|+||++||+|||+||+||+|+++|++|+.+.+..  .+++
T Consensus        29 ~g~~~eGiFR~~g~~~~i~~l~~~l~~~~-~~~~~~~~~~~~va~~LK~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i  107 (186)
T cd04377          29 HGLYTEGIYRKSGSANKIKELRQGLDTDP-DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERV  107 (186)
T ss_pred             cCCCCCceeeCCCCHHHHHHHHHHHhCCC-cccCcccCCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHhcCCHHHHH
Confidence            68899999999999999999999999984 24566788999999999999999999999999999999988764  3688


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ..++.++..||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++++.
T Consensus       108 ~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~~  164 (186)
T cd04377         108 RALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDTA  164 (186)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999987553

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=99.96  E-value=1.8e-28  Score=240.35  Aligned_cols=131  Identities=28%  Similarity=0.400  Sum_probs=120.3

Q ss_pred             cccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHHH
Q psy10137        374 QIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVS  451 (625)
Q Consensus       374 ~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~~  451 (625)
                      ++.+|||||++|+.+++++|++.+|+|....   ..+++|+||++||.|||+||+||+|.++|+.|+.+.+.+  +++..
T Consensus        34 ~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~---~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~  110 (202)
T cd04394          34 HLSTEGLFRKSGSVVRQKELKAKLEGGEACL---SSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKS  110 (202)
T ss_pred             CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc---cccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHH
Confidence            6889999999999999999999999987432   356899999999999999999999999999999987664  46788


Q ss_pred             HHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        452 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       452 ~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+||++..+.
T Consensus       111 ~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~~~  166 (202)
T cd04394         111 ATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEGG  166 (202)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCCcc
Confidence            89999999999999999999999999999999999999999999999999987653

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.95  E-value=4.9e-29  Score=233.79  Aligned_cols=146  Identities=41%  Similarity=0.725  Sum_probs=133.4

Q ss_pred             cceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHHHH
Q psy10137        153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEF  232 (625)
Q Consensus       153 P~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~  232 (625)
                      |.+|..|++||+++|+.++||||++|+..+++++++.++.|.......+.+|+|++|++||.||++||+||+|.++|+.|
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~   80 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF   80 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence            78899999999999999999999999999999999999998644326778999999999999999999999999999999


Q ss_pred             HHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCC
Q psy10137        233 LRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH  298 (625)
Q Consensus       233 l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~  298 (625)
                      +.+.+..+  ++++.++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~  148 (151)
T PF00620_consen   81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPS  148 (151)
T ss_dssp             HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGST
T ss_pred             hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCc
Confidence            98776654  7889999999999999999999999999999999999999999999999999999854

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=99.95  E-value=2.8e-28  Score=238.42  Aligned_cols=138  Identities=30%  Similarity=0.553  Sum_probs=124.1

Q ss_pred             cccccCCCCCCCCcccchHHHHHHHhccCCCC-CC-CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--h
Q psy10137        372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-EL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E  447 (625)
Q Consensus       372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~-~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~  447 (625)
                      .+|+++||+||.+|+..++++|++.+|+|... +. +.+.+|+|+||++||.|||+||+||||.+.|++|+.+.+.+  +
T Consensus        31 ~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~  110 (196)
T cd04395          31 ARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPV  110 (196)
T ss_pred             HcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHH
Confidence            46899999999999999999999999998742 22 22346999999999999999999999999999999987653  4


Q ss_pred             HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137        448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL  509 (625)
Q Consensus       448 ~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~  509 (625)
                      +++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|+|+++++..
T Consensus       111 ~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r~~~~~~~  172 (196)
T cd04395         111 ERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNME  172 (196)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCCCCCCCHH
Confidence            78899999999999999999999999999999999999999999999999999998776543

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=99.95  E-value=4.5e-28  Score=235.79  Aligned_cols=164  Identities=24%  Similarity=0.304  Sum_probs=138.9

Q ss_pred             CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCC--cCCcchhHHHHHHHHHHhcCCCCCCChh
Q psy10137        357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELE--LEVYSVHILANLLKLFLREMPEPLLTFE  434 (625)
Q Consensus       357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~--~~~~d~~~va~lLK~flr~LpePLi~~~  434 (625)
                      .++.+...+..+.....++.+||+||++|+.+++++|++.+++|.+.++.  .+.+|+|+||++||.|||+||+||||.+
T Consensus        21 ~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLP~PLi~~~  100 (190)
T cd04400          21 DLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGE  100 (190)
T ss_pred             CCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHHHHHHHHHHHHhCCcccCCHH
Confidence            45555555544444445688999999999999999999999998654321  2357999999999999999999999999


Q ss_pred             hHHHHHHHhccc---hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCch
Q psy10137        435 YYEEFLRAADLT---EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPE  511 (625)
Q Consensus       435 l~~~~~~~~~~~---~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~  511 (625)
                      +|+.|..+.+..   ++++..++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|||+||||+|++         
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~---------  171 (190)
T cd04400         101 LHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNI---------  171 (190)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCC---------
Confidence            999999887653   47889999999999999999999999999999999999999999999999999987         


Q ss_pred             hHHHHHHHHHHhHhhccc
Q psy10137        512 SELAIHSKIQELKTKIDE  529 (625)
Q Consensus       512 ~~~~~~~~I~~l~~~~d~  529 (625)
                      +...+...|..+-..|+.
T Consensus       172 ~~~~~~~~~~~~~~~f~~  189 (190)
T cd04400         172 PAGIFVLFLTDFDCIFGG  189 (190)
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            355677777777776654

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=99.95  E-value=4.4e-28  Score=234.64  Aligned_cols=145  Identities=25%  Similarity=0.303  Sum_probs=124.0

Q ss_pred             CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhH
Q psy10137        357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYY  436 (625)
Q Consensus       357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~  436 (625)
                      .++.+...+..+..+.+|+.+|||||++|+.++++++++.+|+|....  ....|+|++|++||.|||+||+||+|.++|
T Consensus        20 ~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~--~~~~d~h~va~lLK~fLReLpePli~~~~~   97 (187)
T cd04389          20 KLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL--SGLEDPHVPASLLKLWLRELEEPLIPDALY   97 (187)
T ss_pred             CCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc--cccCCHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence            455555555445556689999999999999999999999999986432  234599999999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcc--cccCCcccccccccccccccccCCC
Q psy10137        437 EEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE--EANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~--~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++|+.+.+.    .+.+++++.+||+.|+.+|.||+.||++|++++  +.||||++|||+||||+|++++.++
T Consensus        98 ~~~i~~~~~----~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~  166 (187)
T cd04389          98 QQCISASED----PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDD  166 (187)
T ss_pred             HHHHHhhcC----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCC
Confidence            999987653    345678899999999999999999999999754  7899999999999999999976554

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=99.95  E-value=1.2e-27  Score=234.08  Aligned_cols=148  Identities=30%  Similarity=0.490  Sum_probs=129.0

Q ss_pred             CCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhh
Q psy10137        357 DIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEY  435 (625)
Q Consensus       357 di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l  435 (625)
                      .++.+...+..+..+ +|+.+||+||.+|+.++++++++.+|+|...+  ++.+ |+|++|++||.|||+||+||+|.++
T Consensus        22 ~iP~il~~~i~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~~LK~~lr~Lp~pLi~~~~   98 (195)
T cd04404          22 PIPPVVRETVEYLQA-HALTTEGIFRRSANTQVVKEVQQKYNMGEPVD--FDQYEDVHLPAVILKTFLRELPEPLLTFDL   98 (195)
T ss_pred             CCChHHHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCC--cccccCHHHHHHHHHHHHHhCCCccCCHHH
Confidence            344444333334444 78999999999999999999999999987544  3444 9999999999999999999999999


Q ss_pred             HHHHHHHhccc-hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        436 YEEFLRAADLT-EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       436 ~~~~~~~~~~~-~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      |+.|+.+.+.+ ++++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|+++..
T Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~  171 (195)
T cd04404          99 YDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDAS  171 (195)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcc
Confidence            99999987654 4788999999999999999999999999999999999999999999999999999987664

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=99.95  E-value=1.5e-27  Score=232.93  Aligned_cols=134  Identities=34%  Similarity=0.534  Sum_probs=121.3

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCC-C-C--CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-E-L--ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--  446 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~-~--~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--  446 (625)
                      +|+++||+||++|+..+++++++.+|+|... + .  +....|+|+||++||.|||+||+||+|.++|+.|+++.+..  
T Consensus        30 ~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~  109 (192)
T cd04398          30 FGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDE  109 (192)
T ss_pred             hCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCH
Confidence            5899999999999999999999999998631 1 1  12345999999999999999999999999999999987764  


Q ss_pred             hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137        447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE  506 (625)
Q Consensus       447 ~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~  506 (625)
                      ++++..++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++.+
T Consensus       110 ~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~  169 (192)
T cd04398         110 SRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPD  169 (192)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCcc
Confidence            368899999999999999999999999999999999999999999999999999998765

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4270|consensus

Probab=99.94  E-value=2.8e-27  Score=256.95  Aligned_cols=165  Identities=36%  Similarity=0.599  Sum_probs=145.4

Q ss_pred             cccceeecccccccccCCC----Cccceeeechh-hh-hhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcCh
Q psy10137        132 SHGHRVFGVPLSQLSSSDG----KVPSLVDRLIT-TI-ELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSV  205 (625)
Q Consensus       132 ~~~~~~FG~~L~~l~~~~~----~vP~vl~~~i~-~i-e~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~  205 (625)
                      .....+||+.+..+-....    .||.++..... .+ .+.|+..|||||+.|...+++.+|+++|.|..+...  ..||
T Consensus       141 s~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDv  218 (577)
T KOG4270|consen  141 SASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDV  218 (577)
T ss_pred             cchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCH
Confidence            4556799998887654222    46888877777 55 557899999999999999999999999998644332  5799


Q ss_pred             HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCcc
Q psy10137        206 HILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPN  283 (625)
Q Consensus       206 ~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~  283 (625)
                      |++||+||.||||||+|++|+++|++|+.++...+  ++.+.++.++.+||+.|+..|.|++.||+.|++++++||||++
T Consensus       219 H~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~  298 (577)
T KOG4270|consen  219 HCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR  298 (577)
T ss_pred             HHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            99999999999999999999999999998887654  8899999999999999999999999999999999999999999


Q ss_pred             chhhhccccccccCC
Q psy10137        284 SLAIVFAPCILRQRH  298 (625)
Q Consensus       284 nLaivf~P~Llr~~~  298 (625)
                      |||+||||+|++..+
T Consensus       299 NlAiV~gPNl~~~~~  313 (577)
T KOG4270|consen  299 NLAIVFGPNLLWMKD  313 (577)
T ss_pred             hceeEecCCccccCC
Confidence            999999999999865

>KOG4406|consensus

Probab=99.94  E-value=1.7e-27  Score=243.13  Aligned_cols=192  Identities=30%  Similarity=0.549  Sum_probs=174.5

Q ss_pred             ccceeecccccccccCC---CCccceeeechhhhhhcc-cccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHH
Q psy10137        133 HGHRVFGVPLSQLSSSD---GKVPSLVDRLITTIELRG-IYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHI  207 (625)
Q Consensus       133 ~~~~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~g-l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~  207 (625)
                      .+.+.||++|..+....   +.+|.+|..|+.++..+| +.+||+||.|++.+.+.++.+..++|.  .++++.+ |+|.
T Consensus       249 l~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~--pVdle~~~~~h~  326 (467)
T KOG4406|consen  249 LPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGE--PVDLEVYKDLHA  326 (467)
T ss_pred             CchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCC--cccHHHhccchh
Confidence            44568999999987743   489999999999999999 999999999999999999999999995  5677777 4999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHhccCcCCCCccch
Q psy10137        208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKT-LPKPNFDLMERLIFHLARVAYHEEANRMTPNSL  285 (625)
Q Consensus       208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~-LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nL  285 (625)
                      .|.++|.|||+||+||+|+++|+......+.+. ++...+.++++. ||+.|+.++++++.+|.+|++|+..|+||+.||
T Consensus       327 ~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNL  406 (467)
T KOG4406|consen  327 PAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNL  406 (467)
T ss_pred             hHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccc
Confidence            999999999999999999999999988888775 888999999987 999999999999999999999999999999999


Q ss_pred             hhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        286 AIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       286 aivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      |+||||+|+|++.  ...++.++..-..+.+++|+||.++|..
T Consensus       407 a~vfGpnl~w~~~--~s~tl~q~npin~F~~~li~~~~~~f~~  447 (467)
T KOG4406|consen  407 AVVFGPNLLWAQD--ESLTLKQINPINKFTKFLIEHYKKLFTT  447 (467)
T ss_pred             eeeeccccccccc--ccccHHHhccHHHHHHHHHHhhhhccCC
Confidence            9999999999863  4456778888899999999999998843

>KOG4724|consensus

Probab=99.94  E-value=5.5e-27  Score=250.33  Aligned_cols=437  Identities=20%  Similarity=0.246  Sum_probs=318.0

Q ss_pred             cccceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHH
Q psy10137        132 SHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL  211 (625)
Q Consensus       132 ~~~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~  211 (625)
                      ..+...||++|..++...+ .|..+..++-++-..|..++||||..++...++++++.+++|.  .+.++...++++|.+
T Consensus        77 ~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv--~v~l~~~~i~v~a~v  153 (741)
T KOG4724|consen   77 TADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGV--DVGLKSGEIVVDAAV  153 (741)
T ss_pred             CCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccc--cccccccceEEeehh
Confidence            3456799999999998777 9999999999999999999999999999999999999999994  556667789999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      +|.|||.+|.-++++++|+.|..+....+  +++.+++++..+||++|..+|.+|...| -|..++++|.|+..|||+|+
T Consensus       154 ~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv  232 (741)
T KOG4724|consen  154 DKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV  232 (741)
T ss_pred             hhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence            99999999999999999999999987665  8999999999999999999999999999 89999999999999999999


Q ss_pred             cccccccCCCCchhhHHh-hHHHHHHHHHHHHhhHHHhhhhHhhhhhhhhhHHHHHHHHHHhhhhccCCCCcchhhhhcc
Q psy10137        290 APCILRQRHFPAQDALSD-ISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSA  368 (625)
Q Consensus       290 ~P~Llr~~~~~~~~~~~~-~~~~~~~ve~lI~~~~~if~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~Lesa~~~~  368 (625)
                      +|++++.........-.+ ..+..-.++|+|.|+..|||+                                        
T Consensus       233 ~p~~l~~~~~~s~e~~k~ln~kv~~l~~flI~nclrifGe----------------------------------------  272 (741)
T KOG4724|consen  233 NPIKLKVLTRTSSEFGKGLNGKVPPLPIFLIVNCLRIFGE----------------------------------------  272 (741)
T ss_pred             cchhcccccccChhhhccccCCCCCceeeehhhhHHhhcc----------------------------------------
Confidence            999999843222211111 123334678889997777633                                        


Q ss_pred             ccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCC--CCCChhhHHHHHHHhcc-
Q psy10137        369 NTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPE--PLLTFEYYEEFLRAADL-  445 (625)
Q Consensus       369 ~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~Lpe--PLi~~~l~~~~~~~~~~-  445 (625)
                             +-+|+||+....+..+++...++.|..   |...++.|..++.+|.|+|+.|.  |.++-.+...+-.+... 
T Consensus       273 -------~i~~~fr~~s~~s~~~e~~sd~s~~q~---Ds~yds~~~~~~~~~~~~~S~p~kqp~v~matlS~ld~ahs~d  342 (741)
T KOG4724|consen  273 -------DIEGIFRKSSKQSTFKELKSDLSKGQV---DSHYDSTHVLASILKEYLRSIPGKQPVVCMATLSGLDSAHSQD  342 (741)
T ss_pred             -------cccceeecccccccchhhhhhhccccc---cccccccchhhhhhhhhcccccccCchhHHHHhhcCCcccchh
Confidence                   335899999999999999999998864   44455789999999999999995  44431111111111100 


Q ss_pred             ----chHH----HHHHHH-HHhhCChhhH--HHHHHHHHHHHHHHhcccccCCccccccccccc--------------cc
Q psy10137        446 ----TEDR----VSTLFS-ILKTLPKPNF--DLMERLIFHLARVAYHEEANRMTPNSLAIVFAQ--------------EL  500 (625)
Q Consensus       446 ----~~~~----~~~~~~-li~~Lp~~n~--~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP--------------~l  500 (625)
                          ..+-    ...++. .+...|++.+  ...--++.+|.+=..++.-.+|.-.--|.-++|              .=
T Consensus       343 ~rn~es~i~v~t~~~lk~ha~laspdp~y~~~sip~sie~lrsHrr~s~pg~s~~ds~ap~tspa~e~~l~kv~fdaPlS  422 (741)
T KOG4724|consen  343 ARNVESEIIVSTVARLKSHAFLASPDPRYSEPSIPSSIECLRSHRRNSTPGKSEGDSPAPRTSPALESELAKVPFDAPLS  422 (741)
T ss_pred             hccccccceeeecccccccccccCCCccccccccchhHHHHHHHHHhcCcccccccCcccccchhhhhhhhhCcCCCchh
Confidence                0000    000000 0112233222  223345556666666555444443333322222              22


Q ss_pred             ccccCCCCCchhHHHHHHHHH---------------------HhHhhc--ccCCcccchhhhhhHHHHHHHHHHHHhcCC
Q psy10137        501 KTKIDEGKLPESELAIHSKIQ---------------------ELKTKI--DEGKLPELELEVYSVHILANLLKLFLREMP  557 (625)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~I~---------------------~l~~~~--d~~~~~~l~~e~~~~~~ia~~lk~f~~~~p  557 (625)
                      ..+.+.++.+.+..+....+.                     ...+.-  +......++.+...+|.++.++|+|.+.+|
T Consensus       423 ~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~taasv~KdfnRKtp  502 (741)
T KOG4724|consen  423 VFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTAASVHKDFNRKTP  502 (741)
T ss_pred             hcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHHHHHHHHhhhhcC
Confidence            233344556655543222220                     000000  011123455566789999999999999999


Q ss_pred             CCcccHHhHHHHHhhcCCc--hHHHHHHHH--------HHhhCCCCcHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q psy10137        558 EPLLTFEYYEEFLRAADLT--EDRVSTLFS--------ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL  622 (625)
Q Consensus       558 ~~l~~~~l~~~~l~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~i~~~~~~~~~~~~~~  622 (625)
                      ..+++.+++.+|.++.+..  +++..++++        ..++.|+.+.-......-..+.+..++..+.||..|+
T Consensus       503 Rgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~  577 (741)
T KOG4724|consen  503 RGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNP  577 (741)
T ss_pred             CCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccccccccccc
Confidence            9999999999999999985  789999999        9999999988777777777777888888888888774

>KOG2200|consensus

Probab=99.94  E-value=4.9e-27  Score=247.91  Aligned_cols=181  Identities=26%  Similarity=0.302  Sum_probs=147.5

Q ss_pred             ccccccCCCCCCCCcccchHHHHHHHhccCCCC-CCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--h
Q psy10137        371 RIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLP-ELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E  447 (625)
Q Consensus       371 rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~  447 (625)
                      |-+|++++||||++|.+++|+.||+.++...+. .++|+....|+||++||+|||+||+||||.++.+.|..+++..  +
T Consensus       328 r~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkk  407 (674)
T KOG2200|consen  328 RERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKK  407 (674)
T ss_pred             HHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHH
Confidence            447999999999999999999999999986543 4788888999999999999999999999999999999999985  4


Q ss_pred             HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHHHHhHhhc
Q psy10137        448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKI  527 (625)
Q Consensus       448 ~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I~~l~~~~  527 (625)
                      +++++++.+|..||++||++|+.|+.||++|+.+++.|+||+.|||+||||+||+...-...+ +...+..+....+..-
T Consensus       408 qrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l~~~~~d~-spr~~~~k~~~g~p~~  486 (674)
T KOG2200|consen  408 QRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHLNALKLDS-SPRVRQKKSETGKPDQ  486 (674)
T ss_pred             HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhhccCCCCC-CccccccccccCCCch
Confidence            899999999999999999999999999999999999999999999999999999976544332 2222222222222221


Q ss_pred             ccCCcccchhhhhhHHHHHHHHHHHH
Q psy10137        528 DEGKLPELELEVYSVHILANLLKLFL  553 (625)
Q Consensus       528 d~~~~~~l~~e~~~~~~ia~~lk~f~  553 (625)
                      .+ ..+.+.+..+..|+|..+-++|-
T Consensus       487 ke-l~~a~aaa~~l~~mI~y~k~Lf~  511 (674)
T KOG2200|consen  487 KE-LNEALAAAQGLAHMIKYQKLLFT  511 (674)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            11 12244556677888888888774

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=99.94  E-value=1.7e-26  Score=227.73  Aligned_cols=151  Identities=20%  Similarity=0.285  Sum_probs=124.5

Q ss_pred             CCCCCCCcccchHHHHHHHhccCCCCCC---CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--------c
Q psy10137        378 SKPKPFPQIHSKIQELKTKIDEGKLPEL---ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--------T  446 (625)
Q Consensus       378 ~gifR~~G~~~~i~~L~~~l~~~~~~~~---~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--------~  446 (625)
                      .|+||.+|+.+++++||+.+++|...+.   +++.+|+|+||++||.|||+||+||||+++|+.|.++...        .
T Consensus        41 ~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~  120 (212)
T cd04399          41 RNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSD  120 (212)
T ss_pred             eeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCH
Confidence            4999999999999999999999875543   2457899999999999999999999999999999876422        3


Q ss_pred             hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhccccc---CCcccccccccccccccccCCCCCch----hHHHHHHH
Q psy10137        447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN---RMTPNSLAIVFAQELKTKIDEGKLPE----SELAIHSK  519 (625)
Q Consensus       447 ~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~N---kM~~~nLa~~faP~ll~~~~~~~~~~----~~~~~~~~  519 (625)
                      ++++++++.++..||++|+.+|++|+.||.+|+.++..|   +|+++|||+||||+++|+..+...+.    ....+..+
T Consensus       121 ~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~L  200 (212)
T cd04399         121 TARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDL  200 (212)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHH
Confidence            589999999999999999999999999999999987666   69999999999999999876653321    12334444


Q ss_pred             HHHhHhhcc
Q psy10137        520 IQELKTKID  528 (625)
Q Consensus       520 I~~l~~~~d  528 (625)
                      |.++-+.|+
T Consensus       201 i~~~~~iF~  209 (212)
T cd04399         201 LTHKDQIFS  209 (212)
T ss_pred             HHhHHHhcc
Confidence            444444443

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.93  E-value=6.4e-26  Score=217.93  Aligned_cols=136  Identities=40%  Similarity=0.644  Sum_probs=126.0

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~~  450 (625)
                      +|+.++|+||.+|+.++++++++.+++|...+.....+|+|++|++||.|||+||+||+|.+.|+.|+.+++.  .++++
T Consensus        17 ~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~~~~~~~~   96 (174)
T smart00324       17 RGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYEEFIEAAKVEDETERL   96 (174)
T ss_pred             cCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHH
Confidence            6889999999999999999999999999866544678899999999999999999999999999999998875  34788


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      ..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+++++...
T Consensus        97 ~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~  154 (174)
T smart00324       97 RALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV  154 (174)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence            9999999999999999999999999999999999999999999999999999877654

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG2710|consensus

Probab=99.93  E-value=5.1e-26  Score=238.17  Aligned_cols=180  Identities=31%  Similarity=0.500  Sum_probs=159.1

Q ss_pred             CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC---CCCCCccCcChHHHHHHHHHHHHhCCCCCC
Q psy10137        148 SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK---LPELELEVYSVHILANLLKLFLREMPEPLL  224 (625)
Q Consensus       148 ~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~---~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl  224 (625)
                      ..+.||.+|.+|+.|++++|+.+.||||+.|+..++++|++.|+++-   ....+++++++|++|++||.|||+||+||+
T Consensus        90 ~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLL  169 (412)
T KOG2710|consen   90 GEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLL  169 (412)
T ss_pred             cceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccC
Confidence            34489999999999999999999999999999999999999999963   345678899999999999999999999999


Q ss_pred             ChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcC-----------CCCccchhhhccc
Q psy10137        225 TFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN-----------RMTPNSLAIVFAP  291 (625)
Q Consensus       225 ~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~N-----------kMt~~nLaivf~P  291 (625)
                      |.++|+.|+..+.+..  +++..++.++..||+.|++||.+|+.+|+-++.+++.|           +|++.|||+||+|
T Consensus       170 P~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P  249 (412)
T KOG2710|consen  170 PLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGP  249 (412)
T ss_pred             CHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcc
Confidence            9999999999998764  78999999999999999999999999999999999988           9999999999999


Q ss_pred             ccccc---CCC--Cc--hhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137        292 CILRQ---RHF--PA--QDALSDISRQTLCIELIISEQLKKLA  327 (625)
Q Consensus       292 ~Llr~---~~~--~~--~~~~~~~~~~~~~ve~lI~~~~~if~  327 (625)
                      .|+..   +..  +.  .........+..+++.+++|+..+|.
T Consensus       250 ~iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~  292 (412)
T KOG2710|consen  250 NILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQ  292 (412)
T ss_pred             hhhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhc
Confidence            99983   111  11  11223455778899999999988887

>KOG4270|consensus

Probab=99.93  E-value=8.4e-26  Score=245.42  Aligned_cols=156  Identities=31%  Similarity=0.443  Sum_probs=133.4

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~~  450 (625)
                      .|++.|||||+.|..++++.||+.||.|..+...  ..|+|++|++||.||||||+|++++++|++|+.+++.  ++++.
T Consensus       181 ~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~  258 (577)
T KOG4270|consen  181 GGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKV  258 (577)
T ss_pred             cCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHH
Confidence            5999999999999999999999999999865443  5699999999999999999999999999999987665  45889


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchh----HHHHHHHHHHhHhh
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPES----ELAIHSKIQELKTK  526 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~----~~~~~~~I~~l~~~  526 (625)
                      +.++.++..||+.|+.+|.|++.||.+|+++++.||||++|||+||||+|+|..++...-..    ...+..+|..+.+.
T Consensus       259 q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~lie~~l~~  338 (577)
T KOG4270|consen  259 QLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLIEKTLEE  338 (577)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998875433222    23334445555555


Q ss_pred             cccC
Q psy10137        527 IDEG  530 (625)
Q Consensus       527 ~d~~  530 (625)
                      .+..
T Consensus       339 ~~~~  342 (577)
T KOG4270|consen  339 RDTS  342 (577)
T ss_pred             hhcc
Confidence            5543

>KOG1453|consensus

Probab=99.93  E-value=5.4e-26  Score=265.70  Aligned_cols=381  Identities=24%  Similarity=0.394  Sum_probs=270.5

Q ss_pred             cCCCeecee-EeccC-Ccccccccccccc-ccccccccccc----ccccccccccccccccccccCCcccccceeecccc
Q psy10137         70 YLGHELESK-IINIP-TACEICNSLFKWP-IERMLVCQNCR----HTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPL  142 (625)
Q Consensus        70 ~~~H~F~~~-~~~~p-t~C~~C~~~i~~~-~~qg~~C~~C~----~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L  142 (625)
                      +..|.|+.. .+..| .||..|..++|+. .-++..|..|.    ...|..|...+...|........... ..++|.++
T Consensus       389 ~~~~~~r~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~-~~~~~~~~  467 (918)
T KOG1453|consen  389 HKSHMFRAGNTVRGPRSWCESCATFLPGQRILQSVKEPLCGRVSLENSNSACSDLVPNVFKQLLKRLKRNL-VKILGTDL  467 (918)
T ss_pred             HHHHHhhcccccCcchhcccchhhhchhhhhhhcccccccccccccccccchhcccchhhHHHHHHhhhhh-hhccccCc
Confidence            344777775 67778 9999999998776 66788999999    79999999999998876543222211 12888888


Q ss_pred             ccc---ccCCCCccceeee-chhhhhhcccccccccccCCCHHHHHHHHHHHhcCC--CCCCCcc---CcChHHHHHHHH
Q psy10137        143 SQL---SSSDGKVPSLVDR-LITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK--LPELELE---VYSVHILANLLK  213 (625)
Q Consensus       143 ~~l---~~~~~~vP~vl~~-~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~--~~~~~~~---~~d~~~va~~lK  213 (625)
                      ..+   .......|.++.. +.......|....|+||.+|....+...+..++...  ...+...   ..++....+.++
T Consensus       468 ~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~  547 (918)
T KOG1453|consen  468 TTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALK  547 (918)
T ss_pred             cccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcch
Confidence            887   2344578999988 888889999999999999999999999999988732  1122211   125666777999


Q ss_pred             HHHHhC--CCCCCChhhHHHHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137        214 LFLREM--PEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP  291 (625)
Q Consensus       214 ~fLr~L--p~pLl~~~~y~~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P  291 (625)
                      .++|.+  |.+....+.|..|.. .....-++...+..+..                  +..+...-+.....   -||.
T Consensus       548 ~~~r~~~~P~~c~~c~~~~~~~~-~~c~~c~~~chkkc~~~------------------~~~~~~~~~l~~~~---~fG~  605 (918)
T KOG1453|consen  548 HYLRSLRKPAPCRTCETYSWFME-LECELCRLVCHKKCLEA------------------LKSLCGHERLPGRP---LFGV  605 (918)
T ss_pred             hhhhcccCCcccccccccchhhh-cccceeeeeccccchhh------------------ccccCccccccccc---cccH
Confidence            999999  999999999988886 22111111111111111                  10011111111111   5666


Q ss_pred             cccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhHhhhhhhhhhHHHHHHHHHHhhhhccCCCCcchhhhhccccc
Q psy10137        292 CILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTR  371 (625)
Q Consensus       292 ~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~Lesa~~~~~~r  371 (625)
                      .|..-....+...-.   ...+|+..+-.                                                   
T Consensus       606 ~l~~~~~~e~~~vP~---i~~~c~~~ie~---------------------------------------------------  631 (918)
T KOG1453|consen  606 SLSELARYEPSTVPF---ILKKCLREIEA---------------------------------------------------  631 (918)
T ss_pred             HHHHhhccCCCCCCH---HHHHHHHHHHH---------------------------------------------------
Confidence            654321100000000   01111222111                                                   


Q ss_pred             cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH-
Q psy10137        372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED-  448 (625)
Q Consensus       372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~-  448 (625)
                       .+++.+|+||++|..++++.|.+.++.|. ..+...+.|+|++++++|+|||+||+|||++.+|+.|+.+....  .+ 
T Consensus       632 -~~lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~  709 (918)
T KOG1453|consen  632 -HLLRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEP  709 (918)
T ss_pred             -hhhhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcccccccc
Confidence             48899999999999999999999999987 45566788999999999999999999999999999999998772  23 


Q ss_pred             -----HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc----hhHHHHHHH
Q psy10137        449 -----RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP----ESELAIHSK  519 (625)
Q Consensus       449 -----~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~----~~~~~~~~~  519 (625)
                           .+..++.++..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+||||+++|+++....-    .....+..+
T Consensus       710 ~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~~~~~~~~~~~~y~~~~~  789 (918)
T KOG1453|consen  710 SRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDGTRDLTDMKDKNYPLAAQ  789 (918)
T ss_pred             ccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCCcchhhhhccchhhHHHh
Confidence                 78999999999999999999999999999999999999999999999999999988754322    122224455


Q ss_pred             HHHhHhhccc
Q psy10137        520 IQELKTKIDE  529 (625)
Q Consensus       520 I~~l~~~~d~  529 (625)
                      +.+++..+-+
T Consensus       790 l~~~~~~~~~  799 (918)
T KOG1453|consen  790 LPEYKITLHN  799 (918)
T ss_pred             cchHHHHHhh
Confidence            5555444433

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.93  E-value=1.3e-25  Score=223.35  Aligned_cols=131  Identities=21%  Similarity=0.322  Sum_probs=118.4

Q ss_pred             ccccCCCCCCCCcccch----HHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccchH
Q psy10137        373 RQIRSSKPKPFPQIHSK----IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~----i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~~  448 (625)
                      +|+.++|+||.+|+.+.    ++++++.+|+|....   ..+|+|+||++||.|||+|||||||+++|+.|.++....  
T Consensus        64 ~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~--  138 (220)
T cd04380          64 RGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANN--  138 (220)
T ss_pred             cCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCc--
Confidence            68999999999999999    999999999997543   567999999999999999999999999999999986322  


Q ss_pred             HHHHHHHHHh-hCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137        449 RVSTLFSILK-TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL  509 (625)
Q Consensus       449 ~~~~~~~li~-~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~  509 (625)
                       ...++.++. .||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|++++.+...
T Consensus       139 -~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~  199 (220)
T cd04380         139 -EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG  199 (220)
T ss_pred             -HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence             245677888 999999999999999999999999999999999999999999998876544

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>KOG1117|consensus

Probab=99.93  E-value=8.3e-26  Score=245.53  Aligned_cols=185  Identities=29%  Similarity=0.436  Sum_probs=162.0

Q ss_pred             ecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccCcChHHHHHHHHHHH
Q psy10137        138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYSVHILANLLKLFL  216 (625)
Q Consensus       138 FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~~d~~~va~~lK~fL  216 (625)
                      -|..|.++-...+.||.+|..||.|+-++||..|||||++|...++..|.+.|-.+- ...+......+.+|+++||+||
T Consensus       713 ~gt~LqeqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Fl  792 (1186)
T KOG1117|consen  713 DGTALQEQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFL  792 (1186)
T ss_pred             CcchhhhhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHH
Confidence            345566665677789999999999999999999999999999999999999998742 2223333457999999999999


Q ss_pred             HhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccc
Q psy10137        217 REMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL  294 (625)
Q Consensus       217 r~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Ll  294 (625)
                      |+|++||+|.++|..|+++++..+  ++++....+|..||..||.||..||.||.+|.++++.|+|+.+|||.||||+||
T Consensus       793 rdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLF  872 (1186)
T KOG1117|consen  793 RDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLF  872 (1186)
T ss_pred             HhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhe
Confidence            999999999999999999998776  899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        295 RQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       295 r~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      ..+   +++     ..+..+++-||++|..+|.=+.
T Consensus       873 qTd---gqd-----ehevnVledLingYvvVF~v~e  900 (1186)
T KOG1117|consen  873 QTD---GQD-----EHEVNVLEDLINGYVVVFEVDE  900 (1186)
T ss_pred             ecC---CCc-----hhhhhHHHHHhcCceEEEEecH
Confidence            874   222     2688999999999998884333

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.91  E-value=2.3e-24  Score=205.67  Aligned_cols=134  Identities=42%  Similarity=0.650  Sum_probs=123.9

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.++|+||.+|+..+++++++.++.|.... ....+|+|++|+++|.|||+||+||+|.+.|+.|+.+++..  +.++
T Consensus        14 ~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~   92 (169)
T cd00159          14 NGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERI   92 (169)
T ss_pred             cCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHH
Confidence            68899999999999999999999999997543 44677999999999999999999999999999999998753  4688


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++...+
T Consensus        93 ~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~  149 (169)
T cd00159          93 EALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD  149 (169)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999977654

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.91  E-value=7.6e-25  Score=205.37  Aligned_cols=134  Identities=39%  Similarity=0.618  Sum_probs=121.0

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+..+|+||.+|+..++++|++.++.|.......+.+|+|+||++||.||++||+||+|.++|+.|+.+.+..  ++++
T Consensus        14 ~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~~~~~~~~   93 (151)
T PF00620_consen   14 KGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKSADEEEQI   93 (151)
T ss_dssp             HTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTSSSHHHHH
T ss_pred             hCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHHhhhhccchhhHHH
Confidence            57899999999999999999999999998654366788999999999999999999999999999999876653  4788


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDE  506 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~  506 (625)
                      +.++.++..||..|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++..
T Consensus        94 ~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~  149 (151)
T PF00620_consen   94 EAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS  149 (151)
T ss_dssp             HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred             HHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence            99999999999999999999999999999999999999999999999999997654

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG3564|consensus

Probab=99.89  E-value=7.5e-23  Score=211.17  Aligned_cols=170  Identities=24%  Similarity=0.402  Sum_probs=143.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~  450 (625)
                      +||.++|+||++|....+++|+++|-+|+.+... ...|+|++|++||+|||+|.|||||..+..+|.++++.++  ..+
T Consensus       376 RGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~-g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa~~tD~dn~~  454 (604)
T KOG3564|consen  376 RGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHL-GNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAAEITDEDNSI  454 (604)
T ss_pred             ccccccceeeccccHHHHHHHHHHHhccCCCCcc-CCcchhHHHHHHHHHHHhcccccccchHHHHHHHHhcCCCchhHH
Confidence            7999999999999999999999999999875433 4559999999999999999999999999999999998864  567


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHHHHhHhhcccC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQELKTKIDEG  530 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I~~l~~~~d~~  530 (625)
                      .++..++..||++||.||.|||-||++||+ +..|+|+..|||.+|||+|+..+-.+.                      
T Consensus       455 ~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p----------------------  511 (604)
T KOG3564|consen  455 LALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP----------------------  511 (604)
T ss_pred             HHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc----------------------
Confidence            889999999999999999999999999998 677899999999999999998443321                      


Q ss_pred             CcccchhhhhhHHHHHHHHHHHHhcCCCCcccHHhHHHHHhhcCC
Q psy10137        531 KLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL  575 (625)
Q Consensus       531 ~~~~l~~e~~~~~~ia~~lk~f~~~~p~~l~~~~l~~~~l~~~~~  575 (625)
                         ...+.-..+...-.+.+..+      .|+-.+|.+||.|-..
T Consensus       512 ---d~~~~l~dv~~q~rvmkaLl------elp~~yWsqfl~v~~~  547 (604)
T KOG3564|consen  512 ---DQVTMLQDVKTQPRVMKALL------ELPLEYWSQFLGVEPV  547 (604)
T ss_pred             ---cHhHHHHhhhhhHHHHHHHH------hCCHHHHHHhhccccc
Confidence               22223334444445565554      5888999999998765

>KOG4269|consensus

Probab=99.88  E-value=1.4e-22  Score=221.81  Aligned_cols=147  Identities=29%  Similarity=0.400  Sum_probs=130.7

Q ss_pred             CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCC--CcCCcchhHHHHHHHHHHhcCCCCCCChhh
Q psy10137        358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPEL--ELEVYSVHILANLLKLFLREMPEPLLTFEY  435 (625)
Q Consensus       358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~--~~~~~d~~~va~lLK~flr~LpePLi~~~l  435 (625)
                      .+-+++.|-.+...-+|++++||||.+|++..|+.|++.||.+.+.++  ..++.|+|+|||+||.|||+||+|||+.++
T Consensus       919 lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~  998 (1112)
T KOG4269|consen  919 LPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTDEM  998 (1112)
T ss_pred             CchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccchhh
Confidence            344666666666667899999999999999999999999999854433  346679999999999999999999999999


Q ss_pred             HHHHHHHhccch--HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccccccccccccc
Q psy10137        436 YEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI  504 (625)
Q Consensus       436 ~~~~~~~~~~~~--~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~  504 (625)
                      |..|.+.....+  .....+..+|..||++|..++.+|+.||++|+.++..|||+.+|||+||+|+|.++.
T Consensus       999 ~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPs 1069 (1112)
T KOG4269|consen  999 YPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPS 1069 (1112)
T ss_pred             hHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcH
Confidence            999999877654  567888999999999999999999999999999999999999999999999999954

>KOG1117|consensus

Probab=99.87  E-value=1.2e-22  Score=221.16  Aligned_cols=176  Identities=23%  Similarity=0.278  Sum_probs=158.4

Q ss_pred             hccCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCCcchhHHHHHHHHHHhcCCCCCC
Q psy10137        353 VTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEVYSVHILANLLKLFLREMPEPLL  431 (625)
Q Consensus       353 ~~~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~~d~~~va~lLK~flr~LpePLi  431 (625)
                      -+-.||+-|+.++..+.++. ||..+||||+.|...++++|-+.|.++.. ..+..+++.+.+|+++||+|||+|++|||
T Consensus       722 Ls~~dIPvIVd~CI~FVTqy-Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLf  800 (1186)
T KOG1117|consen  722 LSKNDIPVIVDSCIAFVTQY-GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLF  800 (1186)
T ss_pred             ccCCCCcEehHHHHHHHHHh-CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcccc
Confidence            34678999999999888776 99999999999999999999999998763 34566677899999999999999999999


Q ss_pred             ChhhHHHHHHHhccc--hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137        432 TFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL  509 (625)
Q Consensus       432 ~~~l~~~~~~~~~~~--~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~  509 (625)
                      |.++|..|+++++.+  ++++..+.++|..||..||.||..||.||++|..+++.|+|+++|||.||||+||.  +++..
T Consensus       801 t~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFq--Tdgqd  878 (1186)
T KOG1117|consen  801 TKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQ--TDGQD  878 (1186)
T ss_pred             chhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhee--cCCCc
Confidence            999999999999885  48999999999999999999999999999999999999999999999999999999  56666


Q ss_pred             chhHHHHHHHHHHhHhhcccCC
Q psy10137        510 PESELAIHSKIQELKTKIDEGK  531 (625)
Q Consensus       510 ~~~~~~~~~~I~~l~~~~d~~~  531 (625)
                      ......+..+|..|...|+-.+
T Consensus       879 ehevnVledLingYvvVF~v~e  900 (1186)
T KOG1117|consen  879 EHEVNVLEDLINGYVVVFEVDE  900 (1186)
T ss_pred             hhhhhHHHHHhcCceEEEEecH
Confidence            6778888889988888876653

>KOG4407|consensus

Probab=99.87  E-value=3.2e-22  Score=224.21  Aligned_cols=158  Identities=27%  Similarity=0.439  Sum_probs=135.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCC---CCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch-
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKL---PELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-  447 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~---~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~-  447 (625)
                      .||+..||||++|+...|.+|++.++.+..   .+..-+.| |+++|.+|||.|||.|||||||.++|..|+++-...+ 
T Consensus      1188 ~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~ 1267 (1973)
T KOG4407|consen 1188 YGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTH 1267 (1973)
T ss_pred             cCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhcccccH
Confidence            689999999999999999999999999742   11111333 8999999999999999999999999999999988754 


Q ss_pred             -HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchh------HHHHHHHH
Q psy10137        448 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPES------ELAIHSKI  520 (625)
Q Consensus       448 -~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~------~~~~~~~I  520 (625)
                       +|+..++.+|..||..+|++|++|+.||.+|+.|++.|||-+.|||++|||+|.|.++|+..++.      ..+++-+|
T Consensus      1268 l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dnm~tmVthM~dQckIVEtLI 1347 (1973)
T KOG4407|consen 1268 LNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDNMATMVTHMSDQCKIVETLI 1347 (1973)
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCccHHHHhhcchhhhhHHHHHH
Confidence             89999999999999999999999999999999999999999999999999999999988754433      33455555


Q ss_pred             HHhHhhcccC
Q psy10137        521 QELKTKIDEG  530 (625)
Q Consensus       521 ~~l~~~~d~~  530 (625)
                      ..+.-+|++.
T Consensus      1348 ~~~dwfF~es 1357 (1973)
T KOG4407|consen 1348 HYNDWFFDES 1357 (1973)
T ss_pred             hhhhheeccC
Confidence            5555556653

>KOG2710|consensus

Probab=99.87  E-value=7.8e-22  Score=206.83  Aligned_cols=228  Identities=25%  Similarity=0.318  Sum_probs=160.3

Q ss_pred             ccCcCCCCccchhhhccccccccCCCCc-hhhHHhhHHHH--HHHHHHHHh---hHHHh-hhhHhhhhhhhhhHHHHHHH
Q psy10137        274 HEEANRMTPNSLAIVFAPCILRQRHFPA-QDALSDISRQT--LCIELIISE---QLKKL-ADALSDISRQTLCIELIISE  346 (625)
Q Consensus       274 ~~~~NkMt~~nLaivf~P~Llr~~~~~~-~~~~~~~~~~~--~~ve~lI~~---~~~if-~d~~~~~~~~~~~~~~~~~~  346 (625)
                      .++.|+|...+++..+.+.++....... ..+..+.....  ..+.-+..-   ....+ +-......+..+++.+- ..
T Consensus         4 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~   82 (412)
T KOG2710|consen    4 RSEENKMLSSSLAVLRATNLLQTSSPSPNMPSNFERSSRLGAASVDSLRDLKLNQGRVLDGLLLKVPLELSSKVASA-ET   82 (412)
T ss_pred             cccccccccccccccccccccCCCCcccccCCccccccccchhhhhhhhhhhhccccccceeeeccchhhhhhhhhc-cc
Confidence            4567999999999999999998743221 11222211111  111111111   00000 00000001111111110 01


Q ss_pred             HHHhhhhccCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCC---CCCCCcCCcchhHHHHHHHHHH
Q psy10137        347 QLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGK---LPELELEVYSVHILANLLKLFL  423 (625)
Q Consensus       347 ~~~~~~~~~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~---~~~~~~~~~d~~~va~lLK~fl  423 (625)
                      ..-.....-+.|+.+...+..+ -.-+++...||||++|+..++++|++.||++.   ....+|+++++|+||++||.||
T Consensus        83 ~~~~~~~~~~~IP~vv~~c~~~-lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~fl  161 (412)
T KOG2710|consen   83 RLQSLNPGEGQIPRVVAKCGQY-LKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFL  161 (412)
T ss_pred             hhccCCccceeCcHHHHHHHHH-HHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHH
Confidence            1122333344444444444332 33468999999999999999999999999986   3456788999999999999999


Q ss_pred             hcCCCCCCChhhHHHHHHHhccc-h-HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhccccc-----------CCccc
Q psy10137        424 REMPEPLLTFEYYEEFLRAADLT-E-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEAN-----------RMTPN  490 (625)
Q Consensus       424 r~LpePLi~~~l~~~~~~~~~~~-~-~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~N-----------kM~~~  490 (625)
                      |+||+||+|.++|+.|+..+... + +++..++.++..||..|+.+|.+|+.||+.++.|+..|           +|++.
T Consensus       162 r~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~  241 (412)
T KOG2710|consen  162 RDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSE  241 (412)
T ss_pred             HhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchh
Confidence            99999999999999999999874 4 89999999999999999999999999999999999998           99999


Q ss_pred             ccccccccccccc
Q psy10137        491 SLAIVFAQELKTK  503 (625)
Q Consensus       491 nLa~~faP~ll~~  503 (625)
                      |||+||+|+|+..
T Consensus       242 nlatIf~P~iL~k  254 (412)
T KOG2710|consen  242 NLATIFGPNILYK  254 (412)
T ss_pred             hhhhhhcchhhhc
Confidence            9999999999994

>KOG1452|consensus

Probab=99.85  E-value=7.6e-22  Score=194.45  Aligned_cols=194  Identities=26%  Similarity=0.325  Sum_probs=163.0

Q ss_pred             ceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCccC-cChHHHHHH
Q psy10137        135 HRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEV-YSVHILANL  211 (625)
Q Consensus       135 ~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~~~-~d~~~va~~  211 (625)
                      ..+||.+|+.++..+. .-|+++..|+++||++|++..|+|+++|+..+-+.||+.|+.+. ....-.+. -|.++|+++
T Consensus       182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~  261 (442)
T KOG1452|consen  182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD  261 (442)
T ss_pred             ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence            3589999999998766 77889999999999999999999999999999999999999843 11122222 389999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhcC--ch---HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchh
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAADL--TE---DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLA  286 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~--~~---~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLa  286 (625)
                      +|+|||||||||+|...++.-++|+..  ++   ....-+-.+|.-||.+++.+|-.++.||..|..+|+.|+||+..||
T Consensus       262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls  341 (442)
T KOG1452|consen  262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLS  341 (442)
T ss_pred             cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHH
Confidence            999999999999999999988888653  22   4455677889999999999999999999999999999999999999


Q ss_pred             hhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        287 IVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       287 ivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      .||||.||-+.+.-......+..+.+.+.+++|+.|.+-...
T Consensus       342 ~i~~P~L~~~~~t~sP~t~~~~sk~~AV~~~~i~~~~s~~~~  383 (442)
T KOG1452|consen  342 LIFAPLLFFCLDTFSPYTISPTSKMAAVRTLDINQASSSLQM  383 (442)
T ss_pred             HHhhhhHHHhhcccCCCccCCcchhHHHHHhhhhccCcHHHH
Confidence            999999998854433445667788888999999987654433

>KOG1450|consensus

Probab=99.85  E-value=3.1e-21  Score=210.33  Aligned_cols=149  Identities=26%  Similarity=0.370  Sum_probs=128.4

Q ss_pred             cccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcC-CcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137        372 IRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELE-VYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED  448 (625)
Q Consensus       372 l~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~-~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~  448 (625)
                      ..|+++.|+||++|+...|..||.++|.+...++... ..|+|.|+++||.||||||+||+|..+...|..+....  ..
T Consensus       485 ~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~  564 (650)
T KOG1450|consen  485 KFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHT  564 (650)
T ss_pred             hhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhh
Confidence            4689999999999999999999999996543333322 23899999999999999999999999999999998874  37


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHH
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKI  520 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I  520 (625)
                      +...+++++..||++|+.||+||+.||++|.+|++.|||+.+|||+||||+++.+-...............|
T Consensus       565 r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~~~~a~~~~~~~~i  636 (650)
T KOG1450|consen  565 RVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQETSSEAIHSTYQSQI  636 (650)
T ss_pred             HHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEeccccccccccccchhhHHhHHHHH
Confidence            889999999999999999999999999999999999999999999999999999766655554444444433

>KOG1451|consensus

Probab=99.84  E-value=8.1e-21  Score=200.06  Aligned_cols=158  Identities=27%  Similarity=0.398  Sum_probs=133.3

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCC-C--CCCC-cCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch-
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGK-L--PELE-LEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-  447 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~-~--~~~~-~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~-  447 (625)
                      +|+.++|+||..|..++|+.|...+-..+ .  .+.+ .+.||+-++++.||.|||.|||||+++.++..|+.|+...+ 
T Consensus       402 ~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq  481 (812)
T KOG1451|consen  402 SGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQ  481 (812)
T ss_pred             cCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccch
Confidence            68899999999999999999987655433 2  2233 36789999999999999999999999999999999998864 


Q ss_pred             -HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCchh-----HHHHHHHHH
Q psy10137        448 -DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPES-----ELAIHSKIQ  521 (625)
Q Consensus       448 -~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~-----~~~~~~~I~  521 (625)
                       -|+.+++.++-+||..||.+|+-||.||.+|+.|+..|.||+.||++||||+|+|+..+.-...+     ...+.-+|.
T Consensus       482 ~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdIKFQNIVVEILIE  561 (812)
T KOG1451|consen  482 TYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDIKFQNIVVEILIE  561 (812)
T ss_pred             hhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcchhhhhhHHHHHh
Confidence             69999999999999999999999999999999999999999999999999999998876533222     234555666


Q ss_pred             HhHhhcccC
Q psy10137        522 ELKTKIDEG  530 (625)
Q Consensus       522 ~l~~~~d~~  530 (625)
                      ++-.+|..-
T Consensus       562 nyeKIF~t~  570 (812)
T KOG1451|consen  562 NYEKIFKTK  570 (812)
T ss_pred             hhHHHhcCC
Confidence            666666553

>KOG4406|consensus

Probab=99.81  E-value=5.5e-20  Score=188.51  Aligned_cols=174  Identities=26%  Similarity=0.352  Sum_probs=139.0

Q ss_pred             cCCCCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCCh
Q psy10137        355 LKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTF  433 (625)
Q Consensus       355 ~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~  433 (625)
                      .+.|+.+..+.-....-.+.+++||+||.+++.+.+.++.+.+++|..++++  .+ |+|..|.++|.|||+||+||++.
T Consensus       268 ~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle--~~~~~h~~avllKtF~R~LpePL~t~  345 (467)
T KOG4406|consen  268 GESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLE--VYKDLHAPAVLLKTFLRSLPEPLLTF  345 (467)
T ss_pred             cCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHH--HhccchhhHHHHHHHHhcCCcccchh
Confidence            4445555543333332223399999999999999999999999999866554  55 59999999999999999999999


Q ss_pred             hhHHHHHHHhccc-hHHHHHHHHHHhh-CChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCch
Q psy10137        434 EYYEEFLRAADLT-EDRVSTLFSILKT-LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPE  511 (625)
Q Consensus       434 ~l~~~~~~~~~~~-~~~~~~~~~li~~-Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~  511 (625)
                      ++|+.+....+.. .++..+++.+++. ||+.|+.++++++.||.+|++|+..|+||+.|||+||||+++|+......-.
T Consensus       346 ~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~  425 (467)
T KOG4406|consen  346 RLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLK  425 (467)
T ss_pred             hhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHH
Confidence            9999998877775 5788999999988 9999999999999999999999999999999999999999999775432222


Q ss_pred             h----HHHHHHHHHHhHhhcccC
Q psy10137        512 S----ELAIHSKIQELKTKIDEG  530 (625)
Q Consensus       512 ~----~~~~~~~I~~l~~~~d~~  530 (625)
                      .    .......|..++..+...
T Consensus       426 q~npin~F~~~li~~~~~~f~~~  448 (467)
T KOG4406|consen  426 QINPINKFTKFLIEHYKKLFTTP  448 (467)
T ss_pred             HhccHHHHHHHHHHhhhhccCCC
Confidence            1    223445555555555553

>KOG4271|consensus

Probab=99.75  E-value=5.9e-19  Score=194.68  Aligned_cols=159  Identities=28%  Similarity=0.493  Sum_probs=147.0

Q ss_pred             cceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc--ChHHHHHH
Q psy10137        134 GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY--SVHILANL  211 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~--d~~~va~~  211 (625)
                      ....||.++......+..+|.++++|++|||..|+.+||+||++|+.....+++..|.+.  .++++.+.  .++++|+.
T Consensus       914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~--~~~dl~s~d~~v~~vagA  991 (1100)
T KOG4271|consen  914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLND--HNFDLSSMDTTVNVVAGA  991 (1100)
T ss_pred             hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhh--ccccccccccccccccCc
Confidence            456799999999988999999999999999999999999999999999999999999873  23444444  59999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      +|.|+..||+||+|+.+...+.++.++.+  .++..++.++..||+.|+.+++|++.||.+|+.+..+|.||.+||++||
T Consensus       992 lksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~ 1071 (1100)
T KOG4271|consen  992 LKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICF 1071 (1100)
T ss_pred             chhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence            99999999999999999999999999887  7788999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy10137        290 APCIL  294 (625)
Q Consensus       290 ~P~Ll  294 (625)
                      ++.|+
T Consensus      1072 ~~~~~ 1076 (1100)
T KOG4271|consen 1072 PTLLM 1076 (1100)
T ss_pred             cchHH
Confidence            99887

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.65  E-value=1.2e-15  Score=148.04  Aligned_cols=182  Identities=19%  Similarity=0.261  Sum_probs=138.3

Q ss_pred             eeecccccccccC-CCCccceeeech--hhhhhccccc--ccccccCCCHHHHHHHHHHHhcCCCC-CCC--ccCcCh--
Q psy10137        136 RVFGVPLSQLSSS-DGKVPSLVDRLI--TTIELRGIYT--EGIYRKSGIHSKIQELKTKIDEGKLP-ELE--LEVYSV--  205 (625)
Q Consensus       136 ~~FG~~L~~l~~~-~~~vP~vl~~~i--~~ie~~gl~~--eGIfR~sg~~~~v~~L~~~~~~g~~~-~~~--~~~~d~--  205 (625)
                      .+||+|+-+-+.. ....|..+..-.  .++..+-++.  .|+|++|+...-+.+.++.++..... ..+  ...|+-  
T Consensus        20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~   99 (235)
T cd04405          20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD   99 (235)
T ss_pred             HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence            4688776554333 335666664444  3444444443  79999999999999999988874211 111  111221  


Q ss_pred             ------HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcC-----chHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhc
Q psy10137        206 ------HILANLLKLFLREMPEPLLTFEYYEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYH  274 (625)
Q Consensus       206 ------~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~-----~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~  274 (625)
                            -+|+.++++|+++|||||+|..+|+.|+.+++.     .+.++++++.++..||++||..|+.|+.||++|+++
T Consensus       100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~  179 (235)
T cd04405         100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKN  179 (235)
T ss_pred             cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc
Confidence                  289999999999999999999999999998872     237889999999999999999999999999999998


Q ss_pred             c-------CcCCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhh
Q psy10137        275 E-------EANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLA  327 (625)
Q Consensus       275 ~-------~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~  327 (625)
                      +       ..|+|   +++..|+|++++++..+       -.....+|.|||+|..+||.
T Consensus       180 ~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~-------~~~~~~LV~Fmmd~~~~ifk  229 (235)
T cd04405         180 DMPRLHKEIENRM---LVKQTFSRAILCSKDLD-------EGLADLLVLFLMDHHQDIFK  229 (235)
T ss_pred             CccccccccchHH---HHHHHhhhHhcCccccC-------HHHHHHHHHHHHHcchhhhc
Confidence            4       25666   89999999999987422       24467899999999999883

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.65  E-value=1.3e-15  Score=146.70  Aligned_cols=145  Identities=18%  Similarity=0.271  Sum_probs=123.3

Q ss_pred             cceeeechhhhhhcccccccc---cccCCCHHHHHHH-HHHHhcCCCCCCCc--------cCcChHHHHHHHHHHHHhCC
Q psy10137        153 PSLVDRLITTIELRGIYTEGI---YRKSGIHSKIQEL-KTKIDEGKLPELEL--------EVYSVHILANLLKLFLREMP  220 (625)
Q Consensus       153 P~vl~~~i~~ie~~gl~~eGI---fR~sg~~~~v~~L-~~~~~~g~~~~~~~--------~~~d~~~va~~lK~fLr~Lp  220 (625)
                      -.++..|.++|+.+|+++++|   ||-+++...++.+ +..|+.|.. ....        ...|+|+++++||-+++.||
T Consensus         7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~-~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP   85 (198)
T cd04401           7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNG-QLQGTAELLDELRYADPHTLILVLKWIWSRLP   85 (198)
T ss_pred             HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCC-cccchHHHHHHHhccChHHHHHHHHHHHHHCC
Confidence            356778999999999999999   9999999999988 456665421 1111        22599999999999999999


Q ss_pred             CCCCCh-hhHHHHHHHhcCchHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccC
Q psy10137        221 EPLLTF-EYYEEFLRAADLTEDRVSTLFSILKTL--PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR  297 (625)
Q Consensus       221 ~pLl~~-~~y~~~l~~~~~~~~~~~~l~~~l~~L--P~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~  297 (625)
                      +++++. +.|..|...-...+....+...++..+  |++|..++..++.+|.+|+.|+..|+|+..+|+.+|||.+|..+
T Consensus        86 ~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~  165 (198)
T cd04401          86 GSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP  165 (198)
T ss_pred             CCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence            999999 999999996544443345888999888  89999999999999999999999999999999999999999885


Q ss_pred             C
Q psy10137        298 H  298 (625)
Q Consensus       298 ~  298 (625)
                      .
T Consensus       166 ~  166 (198)
T cd04401         166 T  166 (198)
T ss_pred             C
Confidence            3

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724|consensus

Probab=99.63  E-value=1.7e-16  Score=170.60  Aligned_cols=140  Identities=22%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             HHHHHhcccccCCcccccccccccccccccCCCCCchhHHHHHHHH--------------------HHhHhhcccCCccc
Q psy10137        475 LARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKI--------------------QELKTKIDEGKLPE  534 (625)
Q Consensus       475 L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~~~~~~~~~I--------------------~~l~~~~d~~~~~~  534 (625)
                      |.+|.. +..|-|+..    .||=.|--.+.+.++|.+..++..++                    +++|+.++.|.  .
T Consensus        67 l~~~~~-a~~~~~~~~----Lfg~pl~nic~~~~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv--~  139 (741)
T KOG4724|consen   67 LEKVWI-ASSNTADSF----LFGWPLTNICVHFRLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGV--D  139 (741)
T ss_pred             hhhccC-CcCCCCCcc----ccCccchhhcccCCCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccc--c
Confidence            334443 345556543    44444444455555777777766555                    89999999987  8


Q ss_pred             chhhhhhHHHHHHHHHHHHhcCCCCcccHHhHHHHHhhcCCc--hHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhh
Q psy10137        535 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE  612 (625)
Q Consensus       535 l~~e~~~~~~ia~~lk~f~~~~p~~l~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~~  612 (625)
                      +.++.+.++++|.++|+|+++||+.+|+++||++|..+++++  +++|++|+|+.++||++|..||++||.|| +|+++|
T Consensus       140 v~l~~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S  218 (741)
T KOG4724|consen  140 VGLKSGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILS  218 (741)
T ss_pred             ccccccceEEeehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhh
Confidence            889999999999999999999999999999999999999997  99999999999999999999999999999 999999


Q ss_pred             hhccCCCCCC
Q psy10137        613 EANRMTPNSL  622 (625)
Q Consensus       613 ~~~~~~~~~~  622 (625)
                      ++|+||++||
T Consensus       219 ~~n~m~~~nl  228 (741)
T KOG4724|consen  219 TINSMSGPNL  228 (741)
T ss_pred             hhccccCccH
Confidence            9999999997

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.50  E-value=1.3e-13  Score=133.99  Aligned_cols=155  Identities=19%  Similarity=0.221  Sum_probs=121.3

Q ss_pred             ccccccccC--CCCCCCCcccchHHHHHHHhccCCCC---CCCcCCcch--------hHHHHHHHHHHhcCCCCCCChhh
Q psy10137        369 NTRIRQIRS--SKPKPFPQIHSKIQELKTKIDEGKLP---ELELEVYSV--------HILANLLKLFLREMPEPLLTFEY  435 (625)
Q Consensus       369 ~~rl~~l~~--~gifR~~G~~~~i~~L~~~l~~~~~~---~~~~~~~d~--------~~va~lLK~flr~LpePLi~~~l  435 (625)
                      ..+.+.+++  .|+|+++|..+.+...++.++..++.   +.+...|+-        .+||+++++||++|||||+|..+
T Consensus        49 ~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l  128 (235)
T cd04405          49 VYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHL  128 (235)
T ss_pred             ccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchH
Confidence            444556665  79999999999999999999987643   122222221        28999999999999999999999


Q ss_pred             HHHHHHHhcc-----chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcc-------cccCCcccccccccccccccc
Q psy10137        436 YEEFLRAADL-----TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE-------EANRMTPNSLAIVFAQELKTK  503 (625)
Q Consensus       436 ~~~~~~~~~~-----~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~-------~~NkM~~~nLa~~faP~ll~~  503 (625)
                      |+.|+.+++.     .+.+++++|.++..||++||+.|+.|+.|+.+++.+.       ..|+|   |++..|+|+++++
T Consensus       129 ~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~  205 (235)
T cd04405         129 FDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCS  205 (235)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCc
Confidence            9999998874     3578999999999999999999999999999999995       36777   8999999999998


Q ss_pred             cCCCCCchhHHHHHHHHHHhHhhc
Q psy10137        504 IDEGKLPESELAIHSKIQELKTKI  527 (625)
Q Consensus       504 ~~~~~~~~~~~~~~~~I~~l~~~~  527 (625)
                      .+-+ .......+.+.|.+..+.|
T Consensus       206 ~~l~-~~~~~~LV~Fmmd~~~~if  228 (235)
T cd04405         206 KDLD-EGLADLLVLFLMDHHQDIF  228 (235)
T ss_pred             cccC-HHHHHHHHHHHHHcchhhh
Confidence            7332 1223445555555554444

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4271|consensus

Probab=99.45  E-value=3.4e-14  Score=157.56  Aligned_cols=129  Identities=23%  Similarity=0.350  Sum_probs=117.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~  450 (625)
                      .|+.++|+||++|++.+..+++..|.++...++.--+..+|+||+.+|.||..||+||+|++++..|.+++...+  .++
T Consensus       946 tg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlksffa~Lpeplipys~h~~~~e~~kI~D~~rkl 1025 (1100)
T KOG4271|consen  946 TGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKL 1025 (1100)
T ss_pred             ccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchhhhhhCCCcccCccCCcchhhhhhcccchhhc
Confidence            446678999999999999999999998665444434457999999999999999999999999999999999865  678


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccc
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELK  501 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll  501 (625)
                      ..++..+..||+.|+.+++|++.||.+|+.+...|.||.+||++||+|.|+
T Consensus      1026 hglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1026 HGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLM 1076 (1100)
T ss_pred             cchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccchHH
Confidence            899999999999999999999999999999999999999999999999887

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.45  E-value=5.4e-13  Score=128.66  Aligned_cols=138  Identities=17%  Similarity=0.153  Sum_probs=115.7

Q ss_pred             ccccCCCC---CCCCcccchHHHH-HHHhccCCCCC-CC------cCCcchhHHHHHHHHHHhcCCCCCCCh-hhHHHHH
Q psy10137        373 RQIRSSKP---KPFPQIHSKIQEL-KTKIDEGKLPE-LE------LEVYSVHILANLLKLFLREMPEPLLTF-EYYEEFL  440 (625)
Q Consensus       373 ~~l~~~gi---fR~~G~~~~i~~L-~~~l~~~~~~~-~~------~~~~d~~~va~lLK~flr~LpePLi~~-~l~~~~~  440 (625)
                      +|++.+++   ||.+++.+.++.+ +..|+.+.... ..      ....|+|+++++||.++|.||.++|+. +.|..|.
T Consensus        20 rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y~~F~   99 (198)
T cd04401          20 RGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYEEFK   99 (198)
T ss_pred             cccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHHHHHH
Confidence            58888888   9999999999988 67777663211 11      122599999999999999999999999 9999999


Q ss_pred             HHhccchHHHHHHHHHHhhC--ChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc
Q psy10137        441 RAADLTEDRVSTLFSILKTL--PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP  510 (625)
Q Consensus       441 ~~~~~~~~~~~~~~~li~~L--p~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~  510 (625)
                      ..-+..+--..+++.++..+  |+.|..++.+++.+|..|+.|+..|+|+..||+.+|||.+|..+.....+
T Consensus       100 ~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~~~~~  171 (198)
T cd04401         100 ARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTGATGP  171 (198)
T ss_pred             HHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCccCCc
Confidence            86443333345888999887  89999999999999999999999999999999999999999988776554

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4370|consensus

Probab=99.44  E-value=7.3e-13  Score=136.09  Aligned_cols=186  Identities=29%  Similarity=0.384  Sum_probs=154.5

Q ss_pred             CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhh
Q psy10137        149 DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEY  228 (625)
Q Consensus       149 ~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~  228 (625)
                      ++..|.++...+.+.+.+|+.++|+||.+...++.++++++=..|+.    ....|+|..++..|+|++.+|+|++|.+ 
T Consensus        68 ~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k----~~~aD~~~~~~~~k~~~~~i~Epvvpi~-  142 (514)
T KOG4370|consen   68 GIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEK----MIFADAHDAAGLIKRFLRQIPEPVVPIE-  142 (514)
T ss_pred             CCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhh----hhHHHHHHHHhHHHHhhhccCCcccccc-
Confidence            33678899999999999999999999999999999999988877742    2335999999999999999999998811 


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhhHHhh
Q psy10137        229 YEEFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDI  308 (625)
Q Consensus       229 y~~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~  308 (625)
                                              +                                     |.++|             
T Consensus       143 ------------------------~-------------------------------------p~V~r-------------  148 (514)
T KOG4370|consen  143 ------------------------F-------------------------------------PSVAR-------------  148 (514)
T ss_pred             ------------------------c-------------------------------------hHHHH-------------
Confidence                                    0                                     11111             


Q ss_pred             HHHHHHHHHHHHhhHHHhhhhHhhhhhhhhhHHHHHHHHHHhhhhccCCCCcchhhhhccccccccccCCCCCCCCcccc
Q psy10137        309 SRQTLCIELIISEQLKKLADALSDISRQTLCIELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHS  388 (625)
Q Consensus       309 ~~~~~~ve~lI~~~~~if~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~Lesa~~~~~~rl~~l~~~gifR~~G~~~  388 (625)
                                                               .+.                             | .|   
T Consensus       149 -----------------------------------------~Ci-----------------------------~-e~---  154 (514)
T KOG4370|consen  149 -----------------------------------------SCI-----------------------------R-EG---  154 (514)
T ss_pred             -----------------------------------------HHh-----------------------------h-cc---
Confidence                                                     000                             0 00   


Q ss_pred             hHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHHHHHHHHHhhCChhhHH
Q psy10137        389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFD  466 (625)
Q Consensus       389 ~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~~~~~~li~~Lp~~n~~  466 (625)
                                     .-..+++.+.+||++||.|||+||+|+++.++-..|.+++..+.  ...+.++.++..||..||.
T Consensus       155 ---------------~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyl  219 (514)
T KOG4370|consen  155 ---------------LATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYL  219 (514)
T ss_pred             ---------------ccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchH
Confidence                           11235678999999999999999999999999999999988753  6788999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCccccccccccccccc
Q psy10137        467 LMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKT  502 (625)
Q Consensus       467 ~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~  502 (625)
                      ++.+|+-|+-+|.+..-.|||+..|++++..|++--
T Consensus       220 l~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~  255 (514)
T KOG4370|consen  220 LYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQE  255 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHH
Confidence            999999999999999999999999999999998754

>KOG1452|consensus

Probab=99.43  E-value=1.5e-13  Score=136.25  Aligned_cols=132  Identities=23%  Similarity=0.251  Sum_probs=112.6

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCC-CCCCcCC-cchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--c--
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKL-PELELEV-YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--T--  446 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~-~~~~~~~-~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~--  446 (625)
                      +|++-.|+|+..|+..+-+-||..|+.... ..+-.+. -|.+++++++|+||||||||||+...++...+++..  +  
T Consensus       214 RGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~d  293 (442)
T KOG1452|consen  214 RGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFD  293 (442)
T ss_pred             cccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCC
Confidence            688889999999999999999999998542 2222222 288899999999999999999999999988888653  2  


Q ss_pred             -hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCccccccccccccccccc
Q psy10137        447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI  504 (625)
Q Consensus       447 -~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~  504 (625)
                       +....-+-.+|..|+.+++.+|..++.||.-|..+++.|+||+..||.+|||.||-.-
T Consensus       294 p~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~L~~~~  352 (442)
T KOG1452|consen  294 PHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCL  352 (442)
T ss_pred             ccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhhHHHhh
Confidence             2345566678899999999999999999999999999999999999999999998643

>KOG0696|consensus

Probab=99.19  E-value=6e-12  Score=129.96  Aligned_cols=114  Identities=16%  Similarity=0.294  Sum_probs=83.2

Q ss_pred             hhhhhhhcccccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccccCCcccccce
Q psy10137         57 DKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHR  136 (625)
Q Consensus        57 ~~~~~~~~~~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~  136 (625)
                      -||.+-++..++.+++|.|..+.|.+||+|.||.+||||..+||++|+.|.+++|++|+..+...|+..........+..
T Consensus        30 ~RkGAlrqKnvhevk~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~  109 (683)
T KOG0696|consen   30 LRKGALRQKNVHEVKSHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRS  109 (683)
T ss_pred             HhhhhhhhcchhhhccceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCccc
Confidence            33444555567789999999999999999999999999999999999999999999999999999987653332222222


Q ss_pred             eecccccccccCCCCccceeeechhhhhhcccccccccccC
Q psy10137        137 VFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKS  177 (625)
Q Consensus       137 ~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~s  177 (625)
                      ..+..+...     .-|.+..+|-..|  +|+...|.=--+
T Consensus       110 kHkf~~~tY-----ssPTFCDhCGsLL--yGl~HQGmKC~~  143 (683)
T KOG0696|consen  110 KHKFKIHTY-----SSPTFCDHCGSLL--YGLIHQGMKCDT  143 (683)
T ss_pred             ccceeeeec-----CCCchhhhHHHHH--HHHHhccccccc
Confidence            222222111     3488888888877  455555544333

>KOG3565|consensus

Probab=99.11  E-value=5.2e-11  Score=133.60  Aligned_cols=146  Identities=29%  Similarity=0.414  Sum_probs=132.1

Q ss_pred             CCccceeeechhhhhhcccccccccc-cCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCC-CCChh
Q psy10137        150 GKVPSLVDRLITTIELRGIYTEGIYR-KSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEP-LLTFE  227 (625)
Q Consensus       150 ~~vP~vl~~~i~~ie~~gl~~eGIfR-~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~p-Ll~~~  227 (625)
                      ..+|.++..|+.+++++|+..+|||| ++|....+..++.++.+|........+-+... ++++|.|+|.+.+| .++++
T Consensus       216 q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e  294 (640)
T KOG3565|consen  216 QFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFE  294 (640)
T ss_pred             ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccc
Confidence            37999999999999999999999999 89999999999999999854444444445666 99999999999999 99999


Q ss_pred             hHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcccccccc
Q psy10137        228 YYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQ  296 (625)
Q Consensus       228 ~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~  296 (625)
                      .+..|+.+....+  .++..+..++..+|..+..++.++..|+...+..++.|.|++.|+|+||||+++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~  365 (640)
T KOG3565|consen  295 DFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPV  365 (640)
T ss_pred             cccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccC
Confidence            9999999988766  66688889999999999999999999999999999999999999999999999765

>KOG4370|consensus

Probab=98.99  E-value=8.1e-10  Score=113.96  Aligned_cols=116  Identities=22%  Similarity=0.204  Sum_probs=101.3

Q ss_pred             ccCcChHHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCc
Q psy10137        200 LEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEA  277 (625)
Q Consensus       200 ~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~  277 (625)
                      .+++++..||+++|.|||+||+||+|.++-..|..++....  .+.+.++.++..||..||.++.+|+-|+-.|.+..-.
T Consensus       158 ~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~  237 (514)
T KOG4370|consen  158 TTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYC  237 (514)
T ss_pred             hhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998765  7888999999999999999999999999999999999


Q ss_pred             CCCCccchhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        278 NRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       278 NkMt~~nLaivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      |||+..||+|+..|++=-               ...++..|..|...+|+++.
T Consensus       238 ~Kln~q~i~i~lspt~q~---------------s~r~l~al~~h~q~lf~~v~  275 (514)
T KOG4370|consen  238 LKLNKQQIFINLSPTEQE---------------SKRGLQALGLHLQTLFEMVR  275 (514)
T ss_pred             hhcchhheeeecchHHHH---------------HHHHHHHHHHHHHHHHhhhe
Confidence            999999999999998732               12345566777777776653

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=98.91  E-value=6.6e-10  Score=84.81  Aligned_cols=52  Identities=25%  Similarity=0.648  Sum_probs=46.3

Q ss_pred             CeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137         73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL  124 (625)
Q Consensus        73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~  124 (625)
                      |.|..+++..|++|++|++++|+...+|++|..|++.+|++|...++..|+.
T Consensus         1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C~~   52 (53)
T PF00130_consen    1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSCGC   52 (53)
T ss_dssp             -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred             CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCCCCC
Confidence            8999999999999999999998878999999999999999999999998863

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>KOG4236|consensus

Probab=98.71  E-value=6.1e-09  Score=110.90  Aligned_cols=61  Identities=23%  Similarity=0.510  Sum_probs=56.4

Q ss_pred             cccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         66 DRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        66 ~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ++..+++|....+++..||+||+||.++||+++||++|..|+...||+|..+++..|+...
T Consensus       139 ed~~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG~r  199 (888)
T KOG4236|consen  139 EDFQIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVR  199 (888)
T ss_pred             cceeeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCccc
Confidence            3456789999999999999999999999999999999999999999999999999997654

>KOG0694|consensus

Probab=98.67  E-value=4.7e-09  Score=115.54  Aligned_cols=100  Identities=18%  Similarity=0.319  Sum_probs=76.2

Q ss_pred             cccccccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccccc--CCcccccceeeccc
Q psy10137         64 QEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARS--SAARSHGHRVFGVP  141 (625)
Q Consensus        64 ~~~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~--~~~~~~~~~~FG~~  141 (625)
                      ..+++.+.||.|..+.+.+||.|.+|++|+|++.+|||+|+.|..+||++|+.++...|....+  ..+...... |..+
T Consensus       150 ~~kVhei~gH~F~aT~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~-~~~~  228 (694)
T KOG0694|consen  150 QSKVHEIDGHKFGATSLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFE-FTFR  228 (694)
T ss_pred             cceeEEeeCcEEEEeeccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCcccccc-cccc
Confidence            3345789999999999999999999999999988899999999999999999999999986653  222222222 5555


Q ss_pred             cccccc-CCCCccceeeechhhhh
Q psy10137        142 LSQLSS-SDGKVPSLVDRLITTIE  164 (625)
Q Consensus       142 L~~l~~-~~~~vP~vl~~~i~~ie  164 (625)
                      ...-.. ....-|.+-.+|-.++.
T Consensus       229 ~Phrf~~~~~q~ptFc~hCGs~L~  252 (694)
T KOG0694|consen  229 NPHRFVKLNRQRPTFCDHCGSVLY  252 (694)
T ss_pred             CCCcchhhhccCccHHHhcchhhh
Confidence            443222 23367888888887774

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=98.66  E-value=9.3e-09  Score=77.30  Aligned_cols=50  Identities=28%  Similarity=0.656  Sum_probs=46.2

Q ss_pred             CeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137         73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC  122 (625)
Q Consensus        73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C  122 (625)
                      |.|....+..|++|++|++.+|++..+|++|..|++++|++|..+++..|
T Consensus         1 H~f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~~~C   50 (50)
T cd00029           1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVPPSC   50 (50)
T ss_pred             CccEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCCCCC
Confidence            88999999999999999999877668999999999999999999998766

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>KOG4236|consensus

Probab=98.64  E-value=5.3e-09  Score=111.36  Aligned_cols=56  Identities=25%  Similarity=0.650  Sum_probs=53.4

Q ss_pred             CCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         71 LGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        71 ~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      .+|+|..+++..||.|.+|.+++.|+.+||++|.+|++.|||+|..+++.+|....
T Consensus       266 vPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~dClge~  321 (888)
T KOG4236|consen  266 VPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPNDCLGEV  321 (888)
T ss_pred             CCeeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhcccccccce
Confidence            58999999999999999999999999999999999999999999999999997654

>KOG0695|consensus

Probab=98.58  E-value=1.8e-08  Score=102.12  Aligned_cols=60  Identities=25%  Similarity=0.366  Sum_probs=56.8

Q ss_pred             ccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         67 RIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        67 ~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ...++||.|+.+.++....|..|.++|||..+||++|-+|++.+||||+..++..|+...
T Consensus       125 ly~~ngh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~~cg~~~  184 (593)
T KOG0695|consen  125 LYRANGHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPLTCGKHM  184 (593)
T ss_pred             HHhhcCcchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhcccccchhhhhc
Confidence            567899999999999999999999999999999999999999999999999999998654

>KOG3565|consensus

Probab=98.56  E-value=4.9e-08  Score=109.93  Aligned_cols=135  Identities=23%  Similarity=0.312  Sum_probs=118.9

Q ss_pred             cccccCCCCCC-CCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCC-CCChhhHHHHHHHhccch--
Q psy10137        372 IRQIRSSKPKP-FPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEP-LLTFEYYEEFLRAADLTE--  447 (625)
Q Consensus       372 l~~l~~~gifR-~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpeP-Li~~~l~~~~~~~~~~~~--  447 (625)
                      .++++.+|+|| .+|....+...+.++..|.......++.+..+ |.++|.|+|.|.+| .|+++.+..|+.......  
T Consensus       231 ~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~~~~~~~~~  309 (640)
T KOG3565|consen  231 RRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHDCAARDNLL  309 (640)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccccccchhhhhhhcCch
Confidence            57899999999 89999999999999999954445555656667 99999999999999 999999999998876543  


Q ss_pred             HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       448 ~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++...++.++..+|..+..++.++..|+.+.++.+..|.|++.|+|+||||+++..++..
T Consensus       310 ~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~~  369 (640)
T KOG3565|consen  310 SRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEGP  369 (640)
T ss_pred             hhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcccc
Confidence            555788889999999999999999999999999999999999999999999998866544

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=98.50  E-value=4.4e-08  Score=73.17  Aligned_cols=49  Identities=27%  Similarity=0.687  Sum_probs=44.3

Q ss_pred             CeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137         73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC  122 (625)
Q Consensus        73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C  122 (625)
                      |.|....+..|++|.+|++.+|+.. +|++|..|++.+|++|..+++..|
T Consensus         1 H~~~~~~~~~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~v~~~C   49 (49)
T smart00109        1 HHFVERTFKKPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEKVPQPC   49 (49)
T ss_pred             CceEEeccCCCCCccccccccCcCC-CCcCCCCCCchHHHHHHhhcCCCC
Confidence            7888988999999999999977654 799999999999999999998766

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=98.44  E-value=1.2e-06  Score=94.13  Aligned_cols=148  Identities=20%  Similarity=0.315  Sum_probs=116.4

Q ss_pred             ccceeeechhhhhhccccccccc---ccCCCHHHHHHHHHHH-hcCCCCC-CC-------ccCcChHHHHHHHHHHHHhC
Q psy10137        152 VPSLVDRLITTIELRGIYTEGIY---RKSGIHSKIQELKTKI-DEGKLPE-LE-------LEVYSVHILANLLKLFLREM  219 (625)
Q Consensus       152 vP~vl~~~i~~ie~~gl~~eGIf---R~sg~~~~v~~L~~~~-~~g~~~~-~~-------~~~~d~~~va~~lK~fLr~L  219 (625)
                      |=.+|..|.++|..+|+++++||   |-.-+...++.+...| ..|.... .+       +...++|+++++||-.+..|
T Consensus         8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL   87 (420)
T PF08101_consen    8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL   87 (420)
T ss_pred             HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence            44577889999999999999998   6666777777666544 4433211 11       22359999999999999999


Q ss_pred             CCCCCChhhHHHHHHHhcCchHHHHHHHHHH-hhCC-HHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccC
Q psy10137        220 PEPLLTFEYYEEFLRAADLTEDRVSTLFSIL-KTLP-KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR  297 (625)
Q Consensus       220 p~pLl~~~~y~~~l~~~~~~~~~~~~l~~~l-~~LP-~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~  297 (625)
                      |+.+++++.|..|...-...+-...+...++ ..|| ++|..++..++.+|..|+.|+..|+|+...|+..+|+-.|...
T Consensus        88 p~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~  167 (420)
T PF08101_consen   88 PGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP  167 (420)
T ss_pred             CCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence            9999999999999877654443344555666 4564 6778899999999999999999999999999999999999885


Q ss_pred             CC
Q psy10137        298 HF  299 (625)
Q Consensus       298 ~~  299 (625)
                      ..
T Consensus       168 ~~  169 (420)
T PF08101_consen  168 DF  169 (420)
T ss_pred             Cc
Confidence            43

>KOG0696|consensus

Probab=98.35  E-value=8.2e-08  Score=99.86  Aligned_cols=57  Identities=25%  Similarity=0.560  Sum_probs=53.5

Q ss_pred             cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      -.-|.|..+++..||+|+|||+++.|.+.||++|..|.+.+|++|...++.-|+...
T Consensus       108 r~kHkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~Dh  164 (683)
T KOG0696|consen  108 RSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDH  164 (683)
T ss_pred             ccccceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcc
Confidence            356999999999999999999999999999999999999999999999999998664

>KOG4239|consensus

Probab=98.33  E-value=1.4e-07  Score=94.30  Aligned_cols=66  Identities=24%  Similarity=0.500  Sum_probs=59.6

Q ss_pred             hhcccccccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccccc
Q psy10137         62 RKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARS  127 (625)
Q Consensus        62 ~~~~~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~  127 (625)
                      .+.+..+..+||.|.......|+||+.|+.++|+.+.+|+.|..|+++||.+|...+..+|..+..
T Consensus        41 ~p~~~lv~~r~~~~~~~g~~~~~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~~  106 (348)
T KOG4239|consen   41 QPLELLVPLRGHNFYTAGLLLPTWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPPS  106 (348)
T ss_pred             CcccceeeccccccccccccccccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCCC
Confidence            345566778999999999999999999999999999999999999999999999999999986653

>KOG1011|consensus

Probab=97.82  E-value=3.1e-06  Score=91.66  Aligned_cols=55  Identities=24%  Similarity=0.476  Sum_probs=51.3

Q ss_pred             cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL  124 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~  124 (625)
                      -.+|+|..+++..||+|-.|..++||..+||++|..|+..||.+|...+..+|-.
T Consensus       170 ttphnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclq  224 (1283)
T KOG1011|consen  170 TTPHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQ  224 (1283)
T ss_pred             CCCCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHH
Confidence            3579999999999999999999999999999999999999999999999998853

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=97.33  E-value=0.00069  Score=73.13  Aligned_cols=135  Identities=19%  Similarity=0.232  Sum_probs=99.6

Q ss_pred             ccccCCCCC---CCCcccchHHHHHH-HhccCCCCCC--------CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHH
Q psy10137        373 RQIRSSKPK---PFPQIHSKIQELKT-KIDEGKLPEL--------ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFL  440 (625)
Q Consensus       373 ~~l~~~gif---R~~G~~~~i~~L~~-~l~~~~~~~~--------~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~  440 (625)
                      +|++..++|   |..-+.+.++.+.. .|..+.....        .....++|+++++||--...||..+|+.+.|..|.
T Consensus        22 rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~~Fk  101 (420)
T PF08101_consen   22 RGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSYEEFK  101 (420)
T ss_pred             ccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHHHHHH
Confidence            455555543   55555555554433 4444432210        11234899999999999999999999999999998


Q ss_pred             HHhccchHHHHHHHHHH-hhCC-hhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        441 RAADLTEDRVSTLFSIL-KTLP-KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       441 ~~~~~~~~~~~~~~~li-~~Lp-~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ..-+..+--..++..++ ..|| +.|..++..++.+|..|+.|+..|+|+..-||-.+|+-.|.....+
T Consensus       102 ~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~~  170 (420)
T PF08101_consen  102 RREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDFG  170 (420)
T ss_pred             HHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCcc
Confidence            76543332345666666 4464 7778899999999999999999999999999999999999977666

>KOG0694|consensus

Probab=97.26  E-value=6.6e-05  Score=83.48  Aligned_cols=57  Identities=25%  Similarity=0.508  Sum_probs=53.5

Q ss_pred             cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ..+|.|..+.+..|++|+|||+++++...+|..|..|+..||.+|...+...|+.+.
T Consensus       228 ~~Phrf~~~~~q~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~  284 (694)
T KOG0694|consen  228 RNPHRFVKLNRQRPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGSR  284 (694)
T ss_pred             cCCCcchhhhccCccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCCCch
Confidence            456999999999999999999999999999999999999999999999999998765

>KOG2996|consensus

Probab=97.15  E-value=0.00014  Score=78.62  Aligned_cols=55  Identities=22%  Similarity=0.589  Sum_probs=50.6

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL  124 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~  124 (625)
                      ..++|.|+-++|..+|.|+.|..++.|...|||+|..|+...|+.|...++. |+.
T Consensus       520 ~an~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~-cgr  574 (865)
T KOG2996|consen  520 RANNHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPP-CGR  574 (865)
T ss_pred             cccCcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCC-ccc
Confidence            4678999999999999999999999998899999999999999999998876 753

>KOG1449|consensus

Probab=97.08  E-value=5.4e-05  Score=81.85  Aligned_cols=80  Identities=21%  Similarity=0.297  Sum_probs=64.0

Q ss_pred             chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCC
Q psy10137        411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRM  487 (625)
Q Consensus       411 d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM  487 (625)
                      |+.++..+++.|.|.+|.|+..        .++..   ..+.++..+.-....++.|+.+-..|..||.+.+...     
T Consensus       273 di~v~S~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-----  339 (670)
T KOG1449|consen  273 DIVVESWDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-----  339 (670)
T ss_pred             ceeeeccccChhhhhcCCCCcc--------cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-----
Confidence            7889999999999999999443        22222   2245566666677899999999999999999887643     


Q ss_pred             cccccccccccccccccC
Q psy10137        488 TPNSLAIVFAQELKTKID  505 (625)
Q Consensus       488 ~~~nLa~~faP~ll~~~~  505 (625)
                        .|+++++.|++++++.
T Consensus       340 --~s~~I~~~~~~~r~pp  355 (670)
T KOG1449|consen  340 --KSLAIVWSPNLFRPPP  355 (670)
T ss_pred             --ccceeecCCCCCCCCC
Confidence              7899999999999876

>KOG0193|consensus

Probab=96.15  E-value=0.0024  Score=70.50  Aligned_cols=54  Identities=22%  Similarity=0.444  Sum_probs=46.0

Q ss_pred             ccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      ...+|.|..+++-.+.+|+.|..-++.   .|++|+.|++.+|..|..+++..|+..
T Consensus       175 pl~~H~~~rktf~~~~fC~~~~~~~l~---~gfrC~~C~~KfHq~Cs~~vp~~C~~~  228 (678)
T KOG0193|consen  175 PLTTHNFVRKTFFPLAFCDSCCNKFLF---TGFRCQTCGYKFHQSCSPRVPTSCVNP  228 (678)
T ss_pred             Cccceeeeeccccchhhhhhhcchhhh---cccccCCCCCccccccCCCCCCCCCCc
Confidence            566799999999999999966554343   689999999999999999999999744

>KOG1449|consensus

Probab=94.31  E-value=0.0037  Score=68.09  Aligned_cols=172  Identities=18%  Similarity=0.248  Sum_probs=115.8

Q ss_pred             ceeecccccccccCCC-Cccc-eeeechhhhhh---cc--cccccccccCCCHHHHHHHHHHHhcCCCCC--CCccCcCh
Q psy10137        135 HRVFGVPLSQLSSSDG-KVPS-LVDRLITTIEL---RG--IYTEGIYRKSGIHSKIQELKTKIDEGKLPE--LELEVYSV  205 (625)
Q Consensus       135 ~~~FG~~L~~l~~~~~-~vP~-vl~~~i~~ie~---~g--l~~eGIfR~sg~~~~v~~L~~~~~~g~~~~--~~~~~~d~  205 (625)
                      ...||..+..+....+ .||. .+.+|+.-++.   ++  +.-.|.++++            .|.|-...  ...-.-|+
T Consensus       207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~------------~D~gae~d~~af~~p~di  274 (670)
T KOG1449|consen  207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAV------------EDEGAEVDGEAFRWPSDI  274 (670)
T ss_pred             CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecc------------ccccccccccccCCccce
Confidence            3456766766655544 8898 77777777655   22  2233444443            34442111  11113488


Q ss_pred             HHHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch---HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCc
Q psy10137        206 HILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE---DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTP  282 (625)
Q Consensus       206 ~~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~---~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~  282 (625)
                      .++..+++.|.+++|.|+..        .++...|   +.+..+.-....++++|+.+-.+|..||.+.+.--       
T Consensus       275 ~v~S~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------  339 (670)
T KOG1449|consen  275 VVESWDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------  339 (670)
T ss_pred             eeeccccChhhhhcCCCCcc--------cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------
Confidence            99999999999999999544        2222222   55666666778899999999999999999988632       


Q ss_pred             cchhhhccccccccCCC-Cc--hhhHHhhHHHHHHHHHHHHhhHHHhhhhHhhh
Q psy10137        283 NSLAIVFAPCILRQRHF-PA--QDALSDISRQTLCIELIISEQLKKLADALSDI  333 (625)
Q Consensus       283 ~nLaivf~P~Llr~~~~-~~--~~~~~~~~~~~~~ve~lI~~~~~if~d~~~~~  333 (625)
                      .+++|++.|+++|++.. +.  ..-+.-...++.+..+.|++....|..++.-.
T Consensus       340 ~s~~I~~~~~~~r~pptL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i~~e  393 (670)
T KOG1449|consen  340 KSLAIVWSPNLFRPPPTLNGADTHLLSGLNVHTAICDFFIENSESLFVNDIDEE  393 (670)
T ss_pred             ccceeecCCCCCCCCCCCCchhhhhcccCCcceeecccchhhhhhhhhcccChh
Confidence            89999999999998432 11  11244556777788889999888886665444

>KOG3532|consensus

Probab=89.85  E-value=0.054  Score=60.23  Aligned_cols=49  Identities=8%  Similarity=-0.127  Sum_probs=42.4

Q ss_pred             cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG  120 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~  120 (625)
                      .+-|.|+.+.+-.||||+.|.+-. | .+++..|..|.++||.+|..+...
T Consensus        70 ~N~~r~~~t~~~~~t~~~~~~~~~-~-~~~AS~c~s~~~V~h~lfqE~k~a  118 (1051)
T KOG3532|consen   70 INQFRPAQIPEELRTFLKSGEDGQ-G-ISKASSCNSISLVLHMLFQEHKDT  118 (1051)
T ss_pred             hhhcChhcCcccccccccccccch-h-hHHHHHHHHHHHHHHHHHHHhhhh
Confidence            455999999999999999999963 4 468999999999999999988744

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=89.58  E-value=0.2  Score=33.16  Aligned_cols=29  Identities=24%  Similarity=0.628  Sum_probs=24.9

Q ss_pred             ccccccccccccccccccccccccccccccc
Q psy10137         85 ACEICNSLFKWPIERMLVCQNCRHTCHRKCY  115 (625)
Q Consensus        85 ~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~  115 (625)
                      +|+.|++.+.|..  +|.|..|.+..|.+|.
T Consensus         2 ~C~~C~~~~~~~~--~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    2 WCDVCRRKIDGFY--FYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCcCCCE--eEEeCCCCCeEcCccC
Confidence            6999999876643  8999999999999984

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>KOG1169|consensus

Probab=85.19  E-value=0.32  Score=54.82  Aligned_cols=56  Identities=27%  Similarity=0.450  Sum_probs=46.8

Q ss_pred             CCCeeceeEeccCCccccccccc---ccccccccccccccccccccccccccccccccc
Q psy10137         71 LGHELESKIINIPTACEICNSLF---KWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        71 ~~H~F~~~~~~~pt~C~~C~~~i---~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ..|.+....+..|++|.+|-++.   .+.+.+|+.|.-|++.+|..|+......|....
T Consensus        97 ~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~  155 (634)
T KOG1169|consen   97 GDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKC  155 (634)
T ss_pred             CceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHHHHHHhhcCccccccc
Confidence            46888899999999999987763   445689999999999999999999988865443

>KOG3532|consensus

Probab=82.58  E-value=0.68  Score=51.94  Aligned_cols=49  Identities=6%  Similarity=-0.133  Sum_probs=43.0

Q ss_pred             ccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM  119 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~  119 (625)
                      ...||-|..+.+...+.|+.|++.||-  .-+..|+.|...||+||..+..
T Consensus       743 ~~~~~d~~~~h~~r~~~~~~~~~ki~~--~~a~~~~~~~~~~~~k~~~~~~  791 (1051)
T KOG3532|consen  743 TEDGGDDEEAHLDRKRSASTRKAKIQA--TFAAGKKKVLDLMPQKRKNTDA  791 (1051)
T ss_pred             CCCCCchHHhhhhhhcccchhccceee--hhhhcccHHHHhcchhhhcchh
Confidence            467899999999999999999998653  4678999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	625
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		3e-31
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		2e-11
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		3e-09
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		9e-27
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		6e-11
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		9e-09
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		2e-26
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		4e-11
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		5e-09
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		1e-24
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		6e-13
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		1e-10
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		1e-23
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		2e-12
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		3e-10
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		4e-23
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		6e-08
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		2e-06
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		2e-21
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		7e-11
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		3e-09
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		1e-19
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		2e-09
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		9e-09
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-19
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-12
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-10
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		4e-19
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		2e-12
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		7e-10
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-19
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-12
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		8e-10
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		5e-19
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		2e-12
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		7e-10
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		6e-19
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		8e-08
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		4e-06
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		8e-19
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		1e-07
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		5e-06
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		3e-18
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		2e-12
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		6e-10
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		2e-17
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		1e-05
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		9e-17
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		6e-10
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		2e-08
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-15
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-08
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-07
1pbw_A	216	Structure Of Bcr-Homology (Bh) Domain Length = 216		2e-07
2qv2_A	342	A Role Of The Lowe Syndrome Protein Ocrl In Early S		3e-04
3qis_A	366	Recognition Of The F&h Motif By The Lowe Syndrome P		4e-04

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)
Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARS 132
           H  +      P  CE C +     I + + C +C    H++C   +  +C          
Sbjct: 210 HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLK 264
Query: 133 HGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
           H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K   D
Sbjct: 265 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 324
Query: 192 -EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLF 247
            +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +  +++ TL 
Sbjct: 325 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH 384
Query: 248 SILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSD 307
             LK LP  + + +  L+ HL RV  HE+ N M   +L IVF P ++R     A  AL+D
Sbjct: 385 EALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALND 444
Query: 308 ISRQTLCIELIISEQ 322
           I  Q L +EL+I  +
Sbjct: 445 IRYQRLVVELLIKNE 459

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           I+++K   D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +
Sbjct: 316 IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 375
Query: 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
             +++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L IVF   L
Sbjct: 376 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTL 430

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           I+++K   D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +  
Sbjct: 316 IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 375
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            ++++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L
Sbjct: 376 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 422

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 132/257 (51%), Gaps = 14/257 (5%)
Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC--GLARSSAA 130
           H  +      P  CE C +     I + + C +C    H++C   +  +C   L R    
Sbjct: 213 HNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIK-- 270
Query: 131 RSHGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTK 189
                +V+   L+ L  + + + P +VD  I  IE RG+ +EG+YR SG    I+++K  
Sbjct: 271 -----KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMA 325
Query: 190 ID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVST 245
            D +G+  ++   VY  ++I+   LKL+ R++P P++T++ Y +F+ AA ++  ++R+  
Sbjct: 326 FDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEA 385
Query: 246 LFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL 305
           +  +L  LP  +++ +  L+ HL +V  +E+ N M   +L IVF P ++R         L
Sbjct: 386 VHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTL 445
Query: 306 SDISRQTLCIELIISEQ 322
            D+  Q L ++++I  +
Sbjct: 446 HDMRYQKLIVQILIENE 462

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           I+++K   D +G+  ++   VY  ++I+   LKL+ R++P P++T++ Y +F+ AA ++ 
Sbjct: 319 IEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISN 378
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            ++R+  +  +L  LP  +++ +  L+ HL +V  +E+ N M   +L IVF   L
Sbjct: 379 ADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTL 433

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           I+++K   D +G+  ++   VY  ++I+   LKL+ R++P P++T++ Y +F+ AA ++ 
Sbjct: 319 IEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISN 378
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            ++R+  +  +L  LP  +++ +  L+ HL +V  +E+ N M   +L
Sbjct: 379 ADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENL 425

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Query: 130 ARSHGHRVFGVPLSQL-SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKT 188
              H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K 
Sbjct: 1   GSKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKM 60
Query: 189 KID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVS 244
             D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +  +++ 
Sbjct: 61  AFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLE 120
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA 304
           TL   LK LP  + + +  L+ HL RV  HE+ N M   +L IVF P ++R     A  A
Sbjct: 121 TLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAA 180
Query: 305 LSDISRQTLCIELIISEQ 322
           L+DI  Q L +EL+I  +
Sbjct: 181 LNDIRYQRLVVELLIKNE 198

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 390 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           I+++K   D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A + +
Sbjct: 55  IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 114
Query: 448 --DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
             +++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L IVF   L
Sbjct: 115 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTL 169

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 520 IQELKTKID-EGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           I+++K   D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +  
Sbjct: 55  IEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMD 114
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            ++++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L
Sbjct: 115 PDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 161

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 11/197 (5%)
Query: 134 GHRVFGVPLSQ-LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
           G RVFG  L + L +S  +VP ++      IE  GI  +GIYR SG+ S IQ L+ + D 
Sbjct: 18  GERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDS 76
Query: 193 GKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA--ADLTEDRVSTLFS 248
             +P+L  E Y   +H + +L KL+ RE+P PLLT++ YE+F  A  A   E+R+  +  
Sbjct: 77  EHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHD 136
Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH-----FPAQD 303
           +++ LP P++  +E L+ HL+ +A +     M   +LAIV+AP +LR +      F    
Sbjct: 137 VIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTA 196
Query: 304 ALSDISRQTLCIELIIS 320
           A  ++  Q++ +E I++
Sbjct: 197 AFMEVRIQSVVVEFILN 213

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 386 IHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA- 442
           + S IQ L+ + D   +P+L  E Y   +H + +L KL+ RE+P PLLT++ YE+F  A 
Sbjct: 63  VASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAV 122
Query: 443 -ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            A   E+R+  +  +++ LP P++  +E L+ HL+ +A +     M   +LAIV+A  L
Sbjct: 123 SAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNL 181

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 515 AIHSKIQELKTKIDEGKLPELELEVY--SVHILANLLKLFLREMPEPLLTFEYYEEFLRA 572
            + S IQ L+ + D   +P+L  E Y   +H + +L KL+ RE+P PLLT++ YE+F  A
Sbjct: 62  GVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDA 121
Query: 573 --ADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             A   E+R+  +  +++ LP P++  +E L+ HL+ +A +     M   +L
Sbjct: 122 VSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 11/211 (5%)
Query: 117 RIMGECGLARSSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRK 176
           + + E GL +     SH H+V           +  VP  V + I  +E RG+  +GIYR 
Sbjct: 7   KTLQEKGLIKDQIFGSHLHKV-------CERENSTVPWFVKQCIEAVEKRGLDVDGIYRV 59
Query: 177 SGIHSKIQELKTKID-EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA 235
           SG  + IQ+L+  ++ E KL   + +   +H++   LK+F RE+PEPL  + ++E+F+ A
Sbjct: 60  SGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEA 119
Query: 236 ADLTED--RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCI 293
               ++  R+  + S+++ LP PN D M+ L  HL ++      N M+  SL IVF P +
Sbjct: 120 IKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTL 179
Query: 294 LRQRHFPAQDALSDISRQTLCIELIISEQLK 324
           LR  +     A+  + +  +  EL++SE  K
Sbjct: 180 LRAENETGNMAIHMVYQNQIA-ELMLSEYSK 209

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 21/153 (13%)
Query: 391 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 448
           QE K  +D+ +  +       +H++   LK+F RE+PEPL  + ++E+F+ A    ++  
Sbjct: 75  QEEKLNLDDSQWED-------IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNT 127
Query: 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK 508
           R+  + S+++ LP PN D M+ L  HL ++      N M+  SL IVF   L    +E  
Sbjct: 128 RIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENE-- 185
Query: 509 LPESELAIHSKIQELKTKIDEGKLPELELEVYS 541
                +AIH         + + ++ EL L  YS
Sbjct: 186 --TGNMAIHM--------VYQNQIAELMLSEYS 208

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 521 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 578
           QE K  +D+ +  +       +H++   LK+F RE+PEPL  + ++E+F+ A    ++  
Sbjct: 75  QEEKLNLDDSQWED-------IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNT 127
Query: 579 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           R+  + S+++ LP PN D M+ L  HL ++      N M+  SL
Sbjct: 128 RIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FGVPL+ + + +  +P  ++R I  IE  G+ TEGIYR SG  S+++ L+ + D+    +
Sbjct: 54  FGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLD 113
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPK 255
           L  + ++V+ +A  +K F  E+P+PL+ +    + + A  +   E ++  L  +LK  PK
Sbjct: 114 LAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPK 173
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCI 315
            N ++ + +I HL +V+++ + N MT  +L+I F P ++R   F   DAL+        I
Sbjct: 174 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP-DFSTMDALTATRTYQTII 232
Query: 316 ELIISE 321
           EL I +
Sbjct: 233 ELFIQQ 238

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           S+++ L+ + D+    +L  + ++V+ +A  +K F  E+P+PL+ +    + + A  +  
Sbjct: 97  SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156
Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            E ++  L  +LK  PK N ++ + +I HL +V+++ + N MT  +L+I F   L
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTL 211

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           S+++ L+ + D+    +L  + ++V+ +A  +K F  E+P+PL+ +    + + A  +  
Sbjct: 97  SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156
Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E ++  L  +LK  PK N ++ + +I HL +V+++ + N MT  +L
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 154 SLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL-KTKIDEGKLPELELEV---YSVHILA 209
           S++ + I  +E RGI  +G+YR  G++S++Q+L    +D     E E E+   + +  + 
Sbjct: 39  SIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTIT 98
Query: 210 NLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRVSTLFSILKTLPKPNFDLMERLIFH 267
           + LK +LR +P PL+ +++   F++AA L   E RVS + S++  LP+ N  ++  L+ H
Sbjct: 99  SALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNH 158
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELII 319
           LA+VA + + N MT  +L +VF P +LR +      A+ DI  Q + IE++I
Sbjct: 159 LAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVA-AIMDIKFQNIVIEILI 209

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 386 IHSKIQEL-KTKIDEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEFLR 441
           ++S++Q+L    +D     E E E+   + +  + + LK +LR +P PL+ +++   F++
Sbjct: 64  VNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK 123
Query: 442 AADL--TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQE 499
           AA L   E RVS + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L +VF   
Sbjct: 124 AAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPT 183
Query: 500 L 500
           L
Sbjct: 184 L 184

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 514 LAIHSKIQEL-KTKIDEGKLPELELEV---YSVHILANLLKLFLREMPEPLLTFEYYEEF 569
           + ++S++Q+L    +D     E E E+   + +  + + LK +LR +P PL+ +++   F
Sbjct: 62  VGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSF 121
Query: 570 LRAADL--TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           ++AA L   E RVS + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L
Sbjct: 122 IKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANL 176

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 145 LSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYS 204
           +S +   +PS+V   +  IE RG+   G+YR SG    ++ELK K    K   L  +V  
Sbjct: 10  VSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDD 69
Query: 205 VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLME 262
           +H + +LLK FLR + EPLLTF     F+ AA++T  ++ ++ ++  +  LP+ N D + 
Sbjct: 70  IHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLA 129
Query: 263 RLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD---ALSDISRQTLCIELII 319
            L+ HL RVA      +M   +LA VF P I+     P  D    L DI RQ   +E ++
Sbjct: 130 FLMIHLQRVA-QSPHTKMDVANLAKVFGPTIVAHA-VPNPDPVTMLQDIKRQPKVVERLL 187
Query: 320 S 320
           S
Sbjct: 188 S 188

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 390 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E 447
           ++ELK K    K   L  +V  +H + +LLK FLR + EPLLTF     F+ AA++T  +
Sbjct: 48  VKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDED 107
Query: 448 DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           + ++ ++  +  LP+ N D +  L+ HL RVA      +M   +LA VF 
Sbjct: 108 NSIAAMYQAVGELPQANRDTLAFLMIHLQRVA-QSPHTKMDVANLAKVFG 156

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 520 IQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--E 577
           ++ELK K    K   L  +V  +H + +LLK FLR + EPLLTF     F+ AA++T  +
Sbjct: 48  VKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDED 107
Query: 578 DRVSTLFSILKTLPKPNFDLMERLIFHLARVA 609
           + ++ ++  +  LP+ N D +  L+ HL RVA
Sbjct: 108 NSIAAMYQAVGELPQANRDTLAFLMIHLQRVA 139

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGV L  L   + +   +P ++   +  ++   + TEGI+R+S     ++E++ K + G 
Sbjct: 45  FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 103
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
           LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +L+T
Sbjct: 104 LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 162
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
           LP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +
Sbjct: 163 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 207

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYS-VHILANLLKLFL 423
           R SANT++                 ++E++ K + G LP ++ + Y+ +H+ A +LK FL
Sbjct: 85  RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFL 125
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
           RE+PEPLLTF+ Y   +   ++ E  RV     +L+TLP+ N+ ++  L   L +++ H 
Sbjct: 126 RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 185
Query: 483 EANRMTPNSLAIVFAQEL 500
           + N+MT  +LA+VF   L
Sbjct: 186 DQNKMTNTNLAVVFGPNL 203

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
           ++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E 
Sbjct: 93  VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 150
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 151 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGV L  L   + +   +P ++   +  ++   + TEGI+R+S     ++E++ K + G 
Sbjct: 9   FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 67
Query: 195 LPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
           LP ++ + Y ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +L+T
Sbjct: 68  LP-VDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 126
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
           LP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +
Sbjct: 127 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 171

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFL 423
           R SANT++                 ++E++ K + G LP ++ + Y ++H+ A +LK FL
Sbjct: 49  RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNALHLPAVILKTFL 89
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
           RE+PEPLLTF+ Y   +   ++ E  RV     +L+TLP+ N+ ++  L   L +++ H 
Sbjct: 90  RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 149
Query: 483 EANRMTPNSLAIVFAQEL 500
           + N+MT  +LA+VF   L
Sbjct: 150 DQNKMTNTNLAVVFGPNL 167

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
           ++E++ K + G LP ++ + Y ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E 
Sbjct: 57  VREVQQKYNMG-LP-VDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 114
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 115 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGV L  L   + +   +P ++   +  ++   + TEGI+R+S     ++E++ K + G 
Sbjct: 10  FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 68
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
           LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +L+T
Sbjct: 69  LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 127
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
           LP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +
Sbjct: 128 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 172

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYS-VHILANLLKLFL 423
           R SANT++                 ++E++ K + G LP ++ + Y+ +H+ A +LK FL
Sbjct: 50  RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFL 90
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
           RE+PEPLLTF+ Y   +   ++ E  RV     +L+TLP+ N+ ++  L   L +++ H 
Sbjct: 91  RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 150
Query: 483 EANRMTPNSLAIVFAQEL 500
           + N+MT  +LA+VF   L
Sbjct: 151 DQNKMTNTNLAVVFGPNL 168

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
           ++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E 
Sbjct: 58  VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 115
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 116 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 160

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGV L  L   + +   +P ++   +  ++   + TEGI+R+S     ++E++ K + G 
Sbjct: 6   FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG- 64
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
           LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +L+T
Sbjct: 65  LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 123
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
           LP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +
Sbjct: 124 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 168

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 21/138 (15%)
Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYS-VHILANLLKLFL 423
           R SANT++                 ++E++ K + G LP ++ + Y+ +H+ A +LK FL
Sbjct: 46  RRSANTQV-----------------VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFL 86
Query: 424 REMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHE 482
           RE+PEPLLTF+ Y   +   ++ E  RV     +L+TLP+ N+ ++  L   L +++ H 
Sbjct: 87  RELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHS 146
Query: 483 EANRMTPNSLAIVFAQEL 500
           + N+MT  +LA+VF   L
Sbjct: 147 DQNKMTNTNLAVVFGPNL 164

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
           ++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E 
Sbjct: 54  VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 111
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 112 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 156

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
Query: 131 RSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKI 190
           R+     FG+PL  L +++  +P  V++ +  IE  G+ TEG+YR SG  +    ++ + 
Sbjct: 16  RNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQF 75
Query: 191 DEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFS 248
           D+     L     +V+ +A  LK F  ++P+PL+ +  + E L AA + +  +R+  L  
Sbjct: 76  DQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE 135
Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
           I+K     N+D+   +I HL RV+   + N MT ++L+I F P ++R
Sbjct: 136 IVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 182

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 468
           +V+ +A  LK F  ++P+PL+ +  + E L AA + +  +R+  L  I+K     N+D+ 
Sbjct: 89  TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 148
Query: 469 ERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQE 522
             +I HL RV+   + N MT ++L+I F   L     E +   S   IH  + E
Sbjct: 149 RYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVE 202

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 541 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 598
           +V+ +A  LK F  ++P+PL+ +  + E L AA + +  +R+  L  I+K     N+D+ 
Sbjct: 89  TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 148
Query: 599 ERLIFHLARVAYHEEANRMTPNSL 622
             +I HL RV+   + N MT ++L
Sbjct: 149 RYVITHLNRVSQQHKINLMTADNL 172

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 138 FGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE 197
           FG+PL  L +++  +P  V++ +  IE  G+ TEG+YR SG  +    ++ + D+     
Sbjct: 13  FGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNIN 72
Query: 198 LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPK 255
           L     +V+ +A  LK F  ++P+PL+ +  + E L AA + +  +R+  L  I+K    
Sbjct: 73  LVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHP 132
Query: 256 PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
            N+D+   +I HL RV+   + N MT ++L+I F P ++R
Sbjct: 133 VNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 172

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 411 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 468
           +V+ +A  LK F  ++P+PL+ +  + E L AA + +  +R+  L  I+K     N+D+ 
Sbjct: 79  TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 138
Query: 469 ERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPESELAIHSKIQE 522
             +I HL RV+   + N MT ++L+I F   L     E +   S   IH  + E
Sbjct: 139 RYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVE 192

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 541 SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLM 598
           +V+ +A  LK F  ++P+PL+ +  + E L AA + +  +R+  L  I+K     N+D+ 
Sbjct: 79  TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 138
Query: 599 ERLIFHLARVAYHEEANRMTPNSL 622
             +I HL RV+   + N MT ++L
Sbjct: 139 RYVITHLNRVSQQHKINLMTADNL 162

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 138 FGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           FGV L  L   + +   +P ++   +  ++   + TEGI+ +S     ++E++ K + G 
Sbjct: 37  FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMG- 95
Query: 195 LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILKT 252
           LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +L+T
Sbjct: 96  LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 154
Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR 297
           LP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +
Sbjct: 155 LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK 199

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 390 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448
           ++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E 
Sbjct: 85  VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 142
Query: 449 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
            RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +LA+VF   L
Sbjct: 143 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNL 195

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 520 IQELKTKIDEGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 578
           ++E++ K + G LP ++ + Y+ +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E 
Sbjct: 85  VREVQQKYNMG-LP-VDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 142
Query: 579 -RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 143 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 187

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 15/224 (6%)
Query: 118 IMGECGLAR-SSAARSHGHRVFGVPLSQLSSSD----GKVPSLVDRLITTIELRGIYTEG 172
           + G+C   R  +AA   G ++FGVP + L  S     G +PS +    T++E   I+TEG
Sbjct: 44  VRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDH-IHTEG 102
Query: 173 IYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEF 232
           ++RKSG   +++ LK K+D G   E  L       +A LLK F RE+PEP+L  + +E  
Sbjct: 103 LFRKSGSVIRLKALKNKVDHG---EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEAL 159
Query: 233 LRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLAR-VAYHEEANRMTPNSLAIVFAP 291
           L+A  L  +  +    +L  L   +   + R  F+  R V+     N+M  ++LA++FAP
Sbjct: 160 LKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAP 219
Query: 292 CILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADALSDISR 335
            +L+       + +S  + + L ++  +   ++ L D  SDI R
Sbjct: 220 NLLQTSE--GHEKMSSNTEKKLRLQAAV---VQTLIDYASDIGR 258

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 389 KIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED 448
           +++ LK K+D G   E  L       +A LLK F RE+PEP+L  + +E  L+A  L  +
Sbjct: 112 RLKALKNKVDHG---EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTE 168
Query: 449 RVSTLFSILKTLPKPNFDLMERLIFHLAR-VAYHEEANRMTPNSLAIVFAQE-LKTKIDE 506
             +    +L  L   +   + R  F+  R V+     N+M  ++LA++FA   L+T    
Sbjct: 169 EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGH 228
Query: 507 GKLP---ESELAIHSKIQE--LKTKIDEGKLPELELE 538
            K+    E +L + + + +  +    D G++P+  LE
Sbjct: 229 EKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILE 265

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 137 VFGVPLSQLSSSDGK-VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKL 195
           VFGVPL+      G+ +P  + + +  +    +   G++RKSG+ S+IQ L+ +++EG +
Sbjct: 20  VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALR-QMNEGAI 78
Query: 196 PELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTL 253
             +  E  S + +A++LK + R++PEPL+T +  E FL+       + R+  + + +  L
Sbjct: 79  DCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLL 138
Query: 254 PKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL 294
           P  N ++++ L++ L+ V    + N+MTP +LA+  AP + 
Sbjct: 139 PDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLF 179

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 386 IHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
           + S+IQ L+ +++EG +  +  E  S + +A++LK + R++PEPL+T +  E FL+    
Sbjct: 63  VKSRIQALR-QMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQY 121
Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
              + R+  + + +  LP  N ++++ L++ L+ V    + N+MTP +LA+  A  L
Sbjct: 122 VPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSL 178

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 515 AIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 574
            + S+IQ L+ +++EG +  +  E  S + +A++LK + R++PEPL+T +  E FL+   
Sbjct: 62  GVKSRIQALR-QMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120
Query: 575 LT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
               + R+  + + +  LP  N ++++ L++ L+ V    + N+MTP +L
Sbjct: 121 YVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 127 SSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL 186
           SS       ++FG+ L  +  +D  +P  V  ++  +  +G  T+GI+R+S      +EL
Sbjct: 2   SSPTSPMPGQLFGISLPNICEND-NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCREL 60
Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED--RVS 244
           K K++ G   E+ L+  S+ ++A++LK FLR +P  + + + Y+ ++   D   D  +++
Sbjct: 61  KEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKIN 118
Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCIL 294
           T+  +L  LP+ N  L+  L   L  +  H  +N+MT  +LA+  AP IL
Sbjct: 119 TVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSIL 168

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 391 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 448
           +ELK K++ G   E+ L+  S+ ++A++LK FLR +P  + + + Y+ ++   D   D  
Sbjct: 58  RELKEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEE 115
Query: 449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
           +++T+  +L  LP+ N  L+  L   L  +  H  +N+MT  +LA+  A  +
Sbjct: 116 KINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSI 167

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 521 QELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-- 578
           +ELK K++ G   E+ L+  S+ ++A++LK FLR +P  + + + Y+ ++   D   D  
Sbjct: 58  RELKEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEE 115
Query: 579 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 618
           +++T+  +L  LP+ N  L+  L   L  +  H  +N+MT
Sbjct: 116 KINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMT 155

>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain Length = 216

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 153 PSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL 212
           P L+ +L+  IE +G+    +YR     S + EL+  +D    P ++LE+  VH+LA+  
Sbjct: 26  PPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLD-CDTPSVDLEMIDVHVLADAF 83
Query: 213 KLFLREMPEPLLTFEYYEEFLRAA---DLTEDRVSTLFSILK--TLPKPNFDLMERLIFH 267
           K +L ++P P++    Y E +  A     +E+ +  L  +++  ++P   +  ++ L+ H
Sbjct: 84  KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKH 143
Query: 268 LARVAYHEEANRMTPNSLAIVFAPCILR 295
             +++     N +    L+ +F+P + R
Sbjct: 144 FFKLSQTSSKNLLNARVLSEIFSPMLFR 171

>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of The Endocytic Pathway Length = 342

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 140 VPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
           VPL + +S    +VP  +  L+  +     + E +++  G+  ++Q++   +D   +PE 
Sbjct: 162 VPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS-IPET 220
Query: 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 258
                S H +A  L +FL  +PEP++ +E Y+  L +A   + R+     ++  LP+ + 
Sbjct: 221 I--PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHR 274
Query: 259 DLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
           ++   L+  L  +    E N +  N +A +F   +LR
Sbjct: 275 NVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 311

>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein Ocrl Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 140 VPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL 198
           VPL + +S    +VP  +  L+  +     + E +++  G+  ++Q++   +D   +PE 
Sbjct: 186 VPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS-IPET 244
Query: 199 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 258
                S H +A  L +FL  +PEP++ +E Y+  L +A   + R+     ++  LP+ + 
Sbjct: 245 I--PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSA--YDPRICR--QVISQLPRCHR 298
Query: 259 DLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR 295
           ++   L+  L  +    E N +  N +A +F   +LR
Sbjct: 299 NVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 335

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	625
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	3e-84
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	5e-35
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	5e-31
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	1e-72
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	3e-40
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	5e-36
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	3e-71
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	5e-38
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	8e-34
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	2e-70
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	3e-39
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	4e-35
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	7e-68
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	1e-38
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	1e-34
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	2e-67
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	9e-39
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	1e-34
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	1e-66
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	7e-39
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	1e-34
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	3e-66
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	9e-39
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	1e-34
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	3e-66
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	8e-38
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	1e-33
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	3e-66
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	1e-37
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	1e-33
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	9e-66
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	6e-36
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	7e-32
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	1e-63
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	4e-38
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	5e-34
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	4e-63
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	2e-36
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	2e-32
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	9e-63
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	2e-37
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	3e-33
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	2e-51
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	4e-30
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	9e-27
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	3e-50
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	4e-27
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	2e-11
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	1e-10
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	2e-10
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	1e-09
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	3e-09
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	3e-09
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	3e-08
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	3e-08
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	4e-08
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	2e-07
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	2e-07
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	5e-07
2yt5_A	66	Metal-response element-binding transcription facto	2e-05
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	1e-04
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	3e-04
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	4e-04
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	7e-04

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  270 bits (693), Expect = 3e-84
 Identities = 81/298 (27%), Positives = 143/298 (47%), Gaps = 12/298 (4%)

Query: 32  NSRGGSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYL--GHELESKIINIPTACEIC 89
             +    E +          +     ++A+ K+ ++I      H  +      P  CE C
Sbjct: 167 VLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYC 226

Query: 90  NSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSD 149
            +     I + + C +C    H++C   +  +C          H  +V+   L+ L  + 
Sbjct: 227 ANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-----KPDLKHVKKVYSCDLTTLVKAH 281

Query: 150 G-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELELEVYS-VH 206
             K P +VD  I  IE RG+ +EG+YR SG    I+++K   D      ++ + +Y  ++
Sbjct: 282 TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 341

Query: 207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERL 264
           I+   LKL+ R++P PL+T++ Y +F+ +A +   ++++ TL   LK LP  + + +  L
Sbjct: 342 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYL 401

Query: 265 IFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
           + HL RV  HE+ N M   +L IVF P ++R     A  AL+DI  Q L +EL+I  +
Sbjct: 402 MAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNE 459

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  137 bits (346), Expect = 5e-35
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 388 SKIQELKTKIDEGK-LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
             I+++K   D      ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 314 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 373

Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
              ++++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L IVF 
Sbjct: 374 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG 427

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  125 bits (316), Expect = 5e-31
 Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 518 SKIQELKTKIDEGK-LPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
             I+++K   D      ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 314 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 373

Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
              ++++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L
Sbjct: 374 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 422

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  231 bits (591), Expect = 1e-72
 Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 127 SSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL 186
           SS +       FG+PL  L +++  +P  V++ +  IE  G+ TEG+YR SG  +    +
Sbjct: 2   SSGSSGWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNI 61

Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVS 244
           + + D+     L     +V+ +A  LK F  ++P+PL+ +  + E L AA +    +R+ 
Sbjct: 62  QKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH 121

Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA 304
            L  I+K     N+D+   +I HL RV+   + N MT ++L+I F P ++R   F  ++ 
Sbjct: 122 ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPD-FENREF 180

Query: 305 LSDISRQTLCIELIISE 321
           LS        +E  I +
Sbjct: 181 LSTTKIHQSVVETFIQQ 197

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  145 bits (367), Expect = 3e-40
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           +    ++ + D+     L     +V+ +A  LK F  ++P+PL+ +  + E L AA +  
Sbjct: 56  TDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPD 115

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
             +R+  L  I+K     N+D+   +I HL RV+   + N MT ++L+I F 
Sbjct: 116 KTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFW 167

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  133 bits (336), Expect = 5e-36
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           +    ++ + D+     L     +V+ +A  LK F  ++P+PL+ +  + E L AA +  
Sbjct: 56  TDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPD 115

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             +R+  L  I+K     N+D+   +I HL RV+   + N MT ++L
Sbjct: 116 KTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  227 bits (582), Expect = 3e-71
 Identities = 67/196 (34%), Positives = 113/196 (57%), Gaps = 5/196 (2%)

Query: 132 SHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKI 190
            H  +V+   L+ L  +   K P +VD  I  IE RG+ +EG+YR SG    I+++K   
Sbjct: 3   KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 62

Query: 191 D-EGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTL 246
           D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +   ++++ TL
Sbjct: 63  DRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETL 122

Query: 247 FSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
              LK LP  + + +  L+ HL RV  HE+ N M   +L IVF P ++R     A  AL+
Sbjct: 123 HEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALN 182

Query: 307 DISRQTLCIELIISEQ 322
           DI  Q L +EL+I  +
Sbjct: 183 DIRYQRLVVELLIKNE 198

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  138 bits (350), Expect = 5e-38
 Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 388 SKIQELKTKID-EGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
             I+++K   D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 53  DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 112

Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
              ++++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L IVF 
Sbjct: 113 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG 166

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  126 bits (320), Expect = 8e-34
 Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 4/109 (3%)

Query: 518 SKIQELKTKID-EGKLPELELEVYS-VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
             I+++K   D +G+  ++ + +Y  ++I+   LKL+ R++P PL+T++ Y +F+ +A +
Sbjct: 53  DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 112

Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
              ++++ TL   LK LP  + + +  L+ HL RV  HE+ N M   +L
Sbjct: 113 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 161

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  227 bits (580), Expect = 2e-70
 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 107 RHTCHRKCYTRIMGECGLARSSAARSHG-HRVFGVPLSQLSSSDGKVPSLVDRLITTIEL 165
           R    R             R S  ++      FGVPL+ + + +  +P  ++R I  IE 
Sbjct: 22  RRNILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEA 81

Query: 166 RGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLT 225
            G+ TEGIYR SG  S+++ L+ + D+    +L  + ++V+ +A  +K F  E+P+PL+ 
Sbjct: 82  TGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVP 141

Query: 226 FEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPN 283
           +    + + A  +   E ++  L  +LK  PK N ++ + +I HL +V+++ + N MT  
Sbjct: 142 YNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSE 201

Query: 284 SLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISE 321
           +L+I F P ++R   F   DAL+        IEL I +
Sbjct: 202 NLSICFWPTLMRPD-FSTMDALTATRTYQTIIELFIQQ 238

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  143 bits (363), Expect = 3e-39
 Identities = 30/112 (26%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           S+++ L+ + D+    +L  + ++V+ +A  +K F  E+P+PL+ +    + + A  +  
Sbjct: 97  SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            E ++  L  +LK  PK N ++ + +I HL +V+++ + N MT  +L+I F 
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFW 208

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  132 bits (333), Expect = 4e-35
 Identities = 28/107 (26%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           S+++ L+ + D+    +L  + ++V+ +A  +K F  E+P+PL+ +    + + A  +  
Sbjct: 97  SEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKIND 156

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E ++  L  +LK  PK N ++ + +I HL +V+++ + N MT  +L
Sbjct: 157 REQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  219 bits (560), Expect = 7e-68
 Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 5/190 (2%)

Query: 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           ++FG  L ++   +   VP  V + I  +E RG+  +GIYR SG  + IQ+L+  +++ +
Sbjct: 18  QIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEE 77

Query: 195 LPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILK 251
              L + +   +H++   LK+F RE+PEPL  + ++E+F+ A        R+  + S+++
Sbjct: 78  KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQ 137

Query: 252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQ 311
            LP PN D M+ L  HL ++      N M+  SL IVF P +LR  +    +    +  Q
Sbjct: 138 KLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAEN-ETGNMAIHMVYQ 196

Query: 312 TLCIELIISE 321
               EL++SE
Sbjct: 197 NQIAELMLSE 206

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  141 bits (357), Expect = 1e-38
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 387 HSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
            + IQ+L+  +++ +   L + +   +H++   LK+F RE+PEPL  + ++E+F+ A   
Sbjct: 63  LATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKK 122

Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
                R+  + S+++ LP PN D M+ L  HL ++      N M+  SL IVF 
Sbjct: 123 QDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFG 176

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  129 bits (327), Expect = 1e-34
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 517 HSKIQELKTKIDEGKLPEL-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
            + IQ+L+  +++ +   L + +   +H++   LK+F RE+PEPL  + ++E+F+ A   
Sbjct: 63  LATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKK 122

Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
                R+  + S+++ LP PN D M+ L  HL ++      N M+  SL
Sbjct: 123 QDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  217 bits (555), Expect = 2e-67
 Identities = 54/201 (26%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 127 SSAARSHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQEL 186
           SS       ++FG+ L  +  +D  +P  V  ++  +  +G  T+GI+R+S      +EL
Sbjct: 2   SSPTSPMPGQLFGISLPNICENDN-LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCREL 60

Query: 187 KTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVS 244
           K K++ G   E+ L+  S+ ++A++LK FLR +P  + + + Y+ ++   D    E++++
Sbjct: 61  KEKLNSG--VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKIN 118

Query: 245 TLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-QRHFPAQD 303
           T+  +L  LP+ N  L+  L   L  +  H  +N+MT  +LA+  AP IL        + 
Sbjct: 119 TVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPEL 178

Query: 304 ALSDISRQTLCIELIISEQLK 324
                 + +L I+ +I   L+
Sbjct: 179 ENEFTKKVSLLIQFLIENCLR 199

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  140 bits (356), Expect = 9e-39
 Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 4/112 (3%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
              +ELK K++ G   E+ L+  S+ ++A++LK FLR +P  + + + Y+ ++   D   
Sbjct: 55  KSCRELKEKLNSG--VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGN 112

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            E++++T+  +L  LP+ N  L+  L   L  +  H  +N+MT  +LA+  A
Sbjct: 113 DEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVA 164

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  129 bits (326), Expect = 1e-34
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
              +ELK K++ G   E+ L+  S+ ++A++LK FLR +P  + + + Y+ ++   D   
Sbjct: 55  KSCRELKEKLNSG--VEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGN 112

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            E++++T+  +L  LP+ N  L+  L   L  +  H  +N+MT  +L
Sbjct: 113 DEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNL 159

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  215 bits (549), Expect = 1e-66
 Identities = 55/193 (28%), Positives = 103/193 (53%), Gaps = 7/193 (3%)

Query: 134 GHRVFGVPLSQL---SSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKI 190
            ++ FGV L  L   +     +P ++   +  ++   + TEGI+R+S     ++E++ K 
Sbjct: 5   PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKY 64

Query: 191 DEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSI 249
           + G   + + +  ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +
Sbjct: 65  NMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV 123

Query: 250 LKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDIS 309
           L+TLP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +   A   L  I+
Sbjct: 124 LQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAIN 181

Query: 310 RQTLCIELIISEQ 322
                 + ++  Q
Sbjct: 182 PINTFTKFLLDHQ 194

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  140 bits (356), Expect = 7e-39
 Identities = 37/111 (33%), Positives = 67/111 (60%), Gaps = 2/111 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
             ++E++ K + G   + + +  ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E
Sbjct: 55  QVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 113

Query: 448 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
             RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +LA+VF 
Sbjct: 114 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG 164

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  129 bits (326), Expect = 1e-34
 Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 2/106 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
             ++E++ K + G   + + +  ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E
Sbjct: 55  QVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 113

Query: 578 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 114 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  215 bits (550), Expect = 3e-66
 Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 11/198 (5%)

Query: 134 GHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
           G RVFG  L +   + G +VP ++      IE  GI  +GIYR SG+ S IQ L+ + D 
Sbjct: 18  GERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDS 76

Query: 193 GKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFS 248
             +P+L  E Y   +H + +L KL+ RE+P PLLT++ YE+F  A      E+R+  +  
Sbjct: 77  EHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHD 136

Query: 249 ILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR-----QRHFPAQD 303
           +++ LP P++  +E L+ HL+ +A +     M   +LAIV+AP +LR        F    
Sbjct: 137 VIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTA 196

Query: 304 ALSDISRQTLCIELIISE 321
           A  ++  Q++ +E I++ 
Sbjct: 197 AFMEVRIQSVVVEFILNH 214

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  141 bits (358), Expect = 9e-39
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 4/114 (3%)

Query: 388 SKIQELKTKIDEGKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 445
           S IQ L+ + D   +P+L  E Y   +H + +L KL+ RE+P PLLT++ YE+F  A   
Sbjct: 65  SNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA 124

Query: 446 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
              E+R+  +  +++ LP P++  +E L+ HL+ +A +     M   +LAIV+A
Sbjct: 125 ATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWA 178

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  129 bits (327), Expect = 1e-34
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 518 SKIQELKTKIDEGKLPELELEVYS--VHILANLLKLFLREMPEPLLTFEYYEEFLRAADL 575
           S IQ L+ + D   +P+L  E Y   +H + +L KL+ RE+P PLLT++ YE+F  A   
Sbjct: 65  SNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA 124

Query: 576 T--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
              E+R+  +  +++ LP P++  +E L+ HL+ +A +     M   +L
Sbjct: 125 ATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  216 bits (551), Expect = 3e-66
 Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 8/221 (3%)

Query: 106 CRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQL---SSSDGKVPSLVDRLITT 162
            ++    K   +                 ++ FGV L  L   +     +P ++   +  
Sbjct: 14  LKYDDFLKSTQKSPATAP-KPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAY 72

Query: 163 IELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEP 222
           ++   + TEGI+R+S     ++E++ K + G   + + +   +H+ A +LK FLRE+PEP
Sbjct: 73  LQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD-QYNELHLPAVILKTFLRELPEP 131

Query: 223 LLTFEYYEEFLRAADLTED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMT 281
           LLTF+ Y   +   ++ E  RV     +L+TLP+ N+ ++  L   L +++ H + N+MT
Sbjct: 132 LLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMT 191

Query: 282 PNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
             +LA+VF P +L  +   A   L  I+      + ++  Q
Sbjct: 192 NTNLAVVFGPNLLWAK--DAAITLKAINPINTFTKFLLDHQ 230

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  139 bits (352), Expect = 8e-38
 Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 2/111 (1%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
             ++E++ K + G   + + +   +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E
Sbjct: 91  QVVREVQQKYNMGLPVDFD-QYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 149

Query: 448 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
             RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +LA+VF 
Sbjct: 150 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG 200

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  127 bits (322), Expect = 1e-33
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
             ++E++ K + G   + + +   +H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E
Sbjct: 91  QVVREVQQKYNMGLPVDFD-QYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE 149

Query: 578 D-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
             RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 150 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  215 bits (550), Expect = 3e-66
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 11/196 (5%)

Query: 136 RVFGVPLSQLSSSDGK----VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
            V+       S    +      S++ + I  +E RGI  +G+YR  G++S++Q+L + + 
Sbjct: 17  PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILM 76

Query: 192 EGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVST 245
           + K            + +  + + LK +LR +P PL+ +++   F++AA L   E RVS 
Sbjct: 77  DPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSE 136

Query: 246 LFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDAL 305
           + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L +VF P +LR +      A+
Sbjct: 137 IHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE-ETVAAI 195

Query: 306 SDISRQTLCIELIISE 321
            DI  Q + IE++I  
Sbjct: 196 MDIKFQNIVIEILIEN 211

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  138 bits (351), Expect = 1e-37
 Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 388 SKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 443
           S++Q+L + + + K            + +  + + LK +LR +P PL+ +++   F++AA
Sbjct: 66  SRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAA 125

Query: 444 DLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            L   E RVS + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L +VF 
Sbjct: 126 KLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFG 181

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  127 bits (321), Expect = 1e-33
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 518 SKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAA 573
           S++Q+L + + + K            + +  + + LK +LR +P PL+ +++   F++AA
Sbjct: 66  SRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAA 125

Query: 574 DLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            L   E RVS + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L
Sbjct: 126 KLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANL 176

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  215 bits (550), Expect = 9e-66
 Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 23/228 (10%)

Query: 103 CQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSSDG----KVPSLVDR 158
            +  R  C R+ +     E G            ++FGVP + L  S       +PS +  
Sbjct: 41  VKGVRGQCDRRRHETAATEIG-----------GKIFGVPFNALPHSAVPEYGHIPSFLVD 89

Query: 159 LITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLRE 218
             T++E   I+TEG++RKSG   +++ LK K+D G+     L       +A LLK F RE
Sbjct: 90  ACTSLE-DHIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRE 145

Query: 219 MPEPLLTFEYYEEFLRAADL-TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEA 277
           +PEP+L  + +E  L+A  L TE++      +   L      ++      L  V+     
Sbjct: 146 LPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSE 205

Query: 278 NRMTPNSLAIVFAPCILRQRHFP---AQDALSDISRQTLCIELIISEQ 322
           N+M  ++LA++FAP +L+        + +    +  Q   ++ +I   
Sbjct: 206 NKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYA 253

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  135 bits (341), Expect = 6e-36
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-T 446
            +++ LK K+D G+     L       +A LLK F RE+PEP+L  + +E  L+A  L T
Sbjct: 111 IRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT 167

Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           E++      +   L      ++      L  V+     N+M  ++LA++FA
Sbjct: 168 EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFA 218

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  123 bits (311), Expect = 7e-32
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL-T 576
            +++ LK K+D G+     L       +A LLK F RE+PEP+L  + +E  L+A  L T
Sbjct: 111 IRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT 167

Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           E++      +   L      ++      L  V+     N+M  ++L
Sbjct: 168 EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  207 bits (529), Expect = 1e-63
 Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 142 LSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELEL 200
           L+   S     +PS+V   +  IE RG+   G+YR SG    ++ELK K    K   L  
Sbjct: 6   LADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLS 65

Query: 201 EVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNF 258
           +V  +H + +LLK FLR + EPLLTF     F+ AA++T  ++ ++ ++  +  LP+ N 
Sbjct: 66  KVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANR 125

Query: 259 DLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ--DALSDISRQTLCIE 316
           D +  L+ HL RVA      +M   +LA VF P I+            L DI RQ   +E
Sbjct: 126 DTLAFLMIHLQRVAQSPH-TKMDVANLAKVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVE 184

Query: 317 LIISEQLK 324
            ++S  L+
Sbjct: 185 RLLSLPLE 192

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  138 bits (351), Expect = 4e-38
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
             ++ELK K    K   L  +V  +H + +LLK FLR + EPLLTF     F+ AA++T 
Sbjct: 46  RTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITD 105

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            ++ ++ ++  +  LP+ N D +  L+ HL RVA      +M   +LA VF 
Sbjct: 106 EDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPH-TKMDVANLAKVFG 156

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  127 bits (321), Expect = 5e-34
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
             ++ELK K    K   L  +V  +H + +LLK FLR + EPLLTF     F+ AA++T 
Sbjct: 46  RTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITD 105

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            ++ ++ ++  +  LP+ N D +  L+ HL RVA      +M   +L
Sbjct: 106 EDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPH-TKMDVANL 151

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  206 bits (527), Expect = 4e-63
 Identities = 42/203 (20%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 135 HRVFGVPLSQLS---SSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKID 191
                + L  L+   +     P L+ +L+  IE +G+    +YR     S + EL+  +D
Sbjct: 5   VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLD 63

Query: 192 EGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED---RVSTLFS 248
               P ++LE+  VH+LA+  K +L ++P P++    Y E +  A   +     +  L  
Sbjct: 64  CDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKK 122

Query: 249 ILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALS 306
           ++++  +P   +  ++ L+ H  +++     N +    L+ +F+P + R     +  +  
Sbjct: 123 LIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFR----FSAASSD 178

Query: 307 DISRQTLCIELIISEQLKKLADA 329
           +       IE++IS +  +   A
Sbjct: 179 NTENLIKVIEILISTEWNERQPA 201

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  134 bits (340), Expect = 2e-36
 Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           S + EL+  +D    P ++LE+  VH+LA+  K +L ++P P++    Y E +  A   +
Sbjct: 53  SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 111

Query: 448 D---RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
                +  L  ++++  +P   +  ++ L+ H  +++     N +    L+ +F+
Sbjct: 112 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFS 166

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  123 bits (310), Expect = 2e-32
 Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
           S + EL+  +D    P ++LE+  VH+LA+  K +L ++P P++    Y E +  A   +
Sbjct: 53  SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 111

Query: 578 D---RVSTLFSILKT--LPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
                +  L  ++++  +P   +  ++ L+ H  +++     N +    L
Sbjct: 112 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL 161

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  206 bits (526), Expect = 9e-63
 Identities = 50/214 (23%), Positives = 104/214 (48%), Gaps = 11/214 (5%)

Query: 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
            VFGVPL+      G  +P  + + +  +    +   G++RKSG+ S+IQ L+   +   
Sbjct: 19  SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAI 78

Query: 195 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKT 252
              +  E  S + +A++LK + R++PEPL+T +  E FL+       + R+  + + +  
Sbjct: 79  DC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIML 137

Query: 253 LPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQT 312
           LP  N ++++ L++ L+ V    + N+MTP +LA+  AP +        +++   + ++ 
Sbjct: 138 LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRK 197

Query: 313 LCIELIISEQLKKLADALSDISRQTLCIELIISE 346
             +     +        L++    T  +  +I+E
Sbjct: 198 QSLGKPDQKD-------LNENLAATQGLAHMIAE 224

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  138 bits (349), Expect = 2e-37
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 446
           S+IQ L+   +      +  E  S + +A++LK + R++PEPL+T +  E FL+      
Sbjct: 65  SRIQALRQMNEGAIDC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVP 123

Query: 447 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
            + R+  + + +  LP  N ++++ L++ L+ V    + N+MTP +LA+  A
Sbjct: 124 KDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 175

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  126 bits (318), Expect = 3e-33
 Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT- 576
           S+IQ L+   +      +  E  S + +A++LK + R++PEPL+T +  E FL+      
Sbjct: 65  SRIQALRQMNEGAIDC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVP 123

Query: 577 -EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
            + R+  + + +  LP  N ++++ L++ L+ V    + N+MTP +L
Sbjct: 124 KDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score =  176 bits (447), Expect = 2e-51
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 17/203 (8%)

Query: 138 FGVPLSQLS---SSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
            G+ L  L    S     P L+ +L+  IE  G+ +E  YR      +            
Sbjct: 23  MGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTD---------- 72

Query: 195 LPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLP 254
               +++ +    LA+ +K FL  +P PL+T E   E  RA                TLP
Sbjct: 73  WSLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGPVGPALEPPTLP 131

Query: 255 KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQR---HFPAQDALSDISRQ 311
                 +  L+ HL RVA    A      +L   F P +LR       P      D S  
Sbjct: 132 LHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEP 191

Query: 312 TLCIELIISEQLKKLADALSDIS 334
           +     ++ E+L +      +++
Sbjct: 192 SPDFPALLVEKLLQEHLEEQEVA 214

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score =  116 bits (293), Expect = 4e-30
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 406 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 465
           +++ +    LA+ +K FL  +P PL+T E   E  RA                TLP    
Sbjct: 77  DVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGPVGPALEPPTLPLHRA 135

Query: 466 DLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
             +  L+ HL RVA    A      +L   F 
Sbjct: 136 LTLRFLLQHLGRVARRAPALGPAVRALGATFG 167

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score =  107 bits (269), Expect = 9e-27
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 536 ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPKPNF 595
           +++ +    LA+ +K FL  +P PL+T E   E  RA                TLP    
Sbjct: 77  DVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGPVGPALEPPTLPLHRA 135

Query: 596 DLMERLIFHLARVAYHEEANRMTPNSL 622
             +  L+ HL RVA    A      +L
Sbjct: 136 LTLRFLLQHLGRVARRAPALGPAVRAL 162

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  177 bits (450), Expect = 3e-50
 Identities = 52/269 (19%), Positives = 103/269 (38%), Gaps = 16/269 (5%)

Query: 61  SRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG 120
           S + +   + + H    K   +  +     S F   +E +  C+  R          I  
Sbjct: 113 SGEDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEAL--CRMKRPIREVPVTKLIDL 170

Query: 121 ECGLARSSAARSHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGI 179
           E      S        +  VPL + +S    +VP  +  L+  +     + E +++  G+
Sbjct: 171 EE----DSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGM 226

Query: 180 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 239
             ++Q++   +D      +     S H +A  L +FL  +PEP++ +E Y+  L +A   
Sbjct: 227 QEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-- 281

Query: 240 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHF 299
                    ++  LP+ + ++   L+  L  +    E N +  N +A +F   +LR    
Sbjct: 282 --DPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPP-- 337

Query: 300 PAQDALSDISRQTLCIELIISEQLKKLAD 328
           P   A    S +   I+ ++   L    D
Sbjct: 338 PNLMARQTPSDRQRAIQFLLGFLLGSEED 366

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  112 bits (281), Expect = 4e-27
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 387 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
             ++Q++   +D      +     S H +A  L +FL  +PEP++ +E Y+  L +A   
Sbjct: 227 QEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-- 281

Query: 447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
                    ++  LP+ + ++   L+  L  +    E N +  N +A +F 
Sbjct: 282 --DPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFT 330

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  101 bits (253), Expect = 2e-23
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 517 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
             ++Q++   +D      +     S H +A  L +FL  +PEP++ +E Y+  L +A   
Sbjct: 227 QEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-- 281

Query: 577 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
                    ++  LP+ + ++   L+  L  +    E N +  N +
Sbjct: 282 --DPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMI 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 87.2 bits (215), Expect = 7e-18
 Identities = 85/541 (15%), Positives = 162/541 (29%), Gaps = 131/541 (24%)

Query: 156 VDRLITTIELRGIYTEGIYR--KSGIHSKIQELKTKI-DEGKLPELELEVYS--VHILAN 210
             RL  T+  +    E + +  +  +    + L + I  E + P +   +Y      L N
Sbjct: 64  TLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 211 LLKLFL-----REMPEPLLTFEYYEEFLRAADLTEDRVS---TLF-------SIL----- 250
             ++F      R   +P L        LR A L E R +    +        + +     
Sbjct: 122 DNQVFAKYNVSR--LQPYLK-------LRQA-LLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 251 ---KTLPKPNFDLMERLIF--HLARVAYHEE--------ANRMTPNSLAIVFAPCILRQR 297
              K   K +F      IF  +L      E           ++ PN  +       ++ R
Sbjct: 172 LSYKVQCKMDFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 298 HFPAQDALSD-ISRQTLCIELIISEQL-----KKLADALSDISRQTLCIELIISEQLKKL 351
               Q  L   +  +     L++   L      K  +A  ++S + L             
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAF-NLSCKIL------------- 269

Query: 352 AVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSK-IQELKTKIDEGKLPELELEVY 410
            +T +     D    SA T                  K +           LP    EV 
Sbjct: 270 -LTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVL 323

Query: 411 SVHILA-NLLKLFLREMPEPLLTFEYY------------EEFLRAADLTEDRVSTLFSIL 457
           + +    +++   +R+      T++ +            E  L   +  E R   +F  L
Sbjct: 324 TTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRL 378

Query: 458 KTLPK----PNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKI-----DEGK 508
              P     P   L+  + F + +       N++   SL     +E    I     +   
Sbjct: 379 SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 509 LPESELAIHSKIQE---LKTKIDEGKLPELELEVYSV-----HILANLLKLFLREMPEPL 560
             E+E A+H  I +   +    D   L    L+ Y       H+        +       
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 561 LTFEYYEEFLRAADLTEDRVSTLFSILKTLPK---------PNFDLMERLIFH-LARVAY 610
           L F + E+ +R      +   ++ + L+ L           P ++ +   I   L ++  
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 611 H 611
           +
Sbjct: 558 N 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.4 bits (192), Expect = 4e-15
 Identities = 66/435 (15%), Positives = 135/435 (31%), Gaps = 106/435 (24%)

Query: 119 MGECG---LARSSAARSH------GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIY 169
           +   G   +A      S+        ++F + L   +S +  V  ++ +L+  I+    +
Sbjct: 158 VLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPN--W 213

Query: 170 TEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY--SVHIL-----ANLLKLF------L 216
           T      S I  +I  ++ ++       L+ + Y   + +L     A     F      L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 217 -----REMPEPLLTFEYYEEFL--RAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLA 269
                +++ + L         L   +  LT D V +L    K L     DL         
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQDL--------- 318

Query: 270 RVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQ---------DALSDISRQTLCIELIIS 320
                 E     P  L+I+        R   A          D L+ I      + ++  
Sbjct: 319 ----PREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEP 368

Query: 321 EQLKKLADALS------DISRQTLCI----------ELIISEQLKKLAVTLKDIDDLDTA 364
            + +K+ D LS       I    L +           +++++  K   V  K   +   +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTIS 427

Query: 365 RHSANTRIRQIRSSKPKPFPQIHSKIQE---LKTKIDEGKLPELELEVYSV-----HILA 416
             S    ++     K +    +H  I +   +    D   L    L+ Y       H+  
Sbjct: 428 IPSIYLELKV----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 417 NLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPK---------PNFDL 467
                 +       L F + E+ +R      +   ++ + L+ L           P ++ 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 468 MERLIFH-LARVAYH 481
           +   I   L ++  +
Sbjct: 544 LVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.2 bits (189), Expect = 1e-14
 Identities = 85/498 (17%), Positives = 165/498 (33%), Gaps = 129/498 (25%)

Query: 207 ILANLLKLFLR--------EMPEPLLTFEYYEEFLRAADLTEDRVSTLFSILKTLPK--- 255
           IL+     F+         +MP+ +L+ E  +  + + D        LF  L +  +   
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMV 79

Query: 256 ---------PNFD-LMERLIFH-----LARVAYHEEANRMTPNSLAIVFAPC-ILRQRHF 299
                     N+  LM  +        +    Y E+ +R+  ++   VFA   + R + +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPY 137

Query: 300 PA-QDALSDISR--------------QTLCIELIISEQLKKLADA----LSDISRQTLCI 340
              + AL ++                  + +++ +S +++   D     L+   +     
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSP 195

Query: 341 ELIISEQLKKLAVTLKDIDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEG 400
           E ++ E L+KL   + D +    + HS+N ++R            IHS   EL+  +   
Sbjct: 196 ETVL-EMLQKLLYQI-DPNWTSRSDHSSNIKLR------------IHSIQAELRRLLKSK 241

Query: 401 KLPE--LEL-EVYSVHILANLLKLF------L-----REMPEPLLTFEYYEEFL--RAAD 444
                 L L  V +    A     F      L     +++ + L         L   +  
Sbjct: 242 PYENCLLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 445 LTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA--QELKT 502
           LT D V +L    K L     DL               E     P  L+I+    ++   
Sbjct: 298 LTPDEVKSLLL--KYLDCRPQDL-------------PREVLTTNPRRLSIIAESIRDGLA 342

Query: 503 KIDEGKLPESELAIHSKIQELKTKIDEG--KLPELEL-EVY--------SVHILANLLKL 551
             D  K        H    +L T I+     L   E  +++        S HI   LL L
Sbjct: 343 TWDNWK--------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 552 FLREMPEPLLTFEYYEEFLRAADLTEDRVSTLFSI----LKTLPKPN--FDLMERLIFHL 605
              ++ +         +  + + + +    +  SI    L+   K    + L   ++ H 
Sbjct: 395 IWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 606 ARVAYHEEANRMTPNSLD 623
             +    +++ + P  LD
Sbjct: 454 -NIPKTFDSDDLIPPYLD 470

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 84

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 49  KRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERM---LVCQN 105
           +  KE +   +   ++ + I + GHE    + + PT CE C     W + +    L C+ 
Sbjct: 1   ESKKEPEFPVEPVGEKSNYICHKGHEFIPTLYHFPTNCEACMKPL-WHMFKPPPALECRR 59

Query: 106 CRHTCHRKCYTRIMGEC 122
           C   CH+    +     
Sbjct: 60  CHIKCHKDHMDKKEEII 76

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 18/76 (23%), Positives = 31/76 (40%)

Query: 60  ASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIM 119
           +S KQ        HE  +     PT C +C        ++   C+ C    H+KC  +I+
Sbjct: 5   SSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKII 64

Query: 120 GECGLARSSAARSHGH 135
           G C    +++  + G 
Sbjct: 65  GRCTGTAANSRDTSGP 80

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens} Length = 77

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 58  KKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTR 117
           ++ + KQ        HE  +     PT C +C+       ++   C+ C    H+KC  +
Sbjct: 9   RRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68

Query: 118 IMGEC 122
           ++ +C
Sbjct: 69  VIAKC 73

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus} Length = 59

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 72  GHELESK-IINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
           GH      +   P  C++C         + L C NC+ TCH +C + I  +C
Sbjct: 10  GHRFVELALRGGPGWCDLCGREV-L--RQALRCANCKFTCHSECRSLIQLDC 58

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus} Length = 72

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 72  GHELESK-IINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
           GH      +   P  C++C       + + L C NC+ TCH +C + I  +C
Sbjct: 23  GHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDC 71

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus} Length = 66

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERM-LVCQNCRHTCHRKCYTRIMGECGL 124
            H  E      PT C  C  L  W I R  + C  C   CH KC   +  +C L
Sbjct: 13  QHNFEVWTATTPTYCYECEGLL-WGIARQGMRCTECGVKCHEKCQDLLNADCKL 65

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens} Length = 65

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
            H  +      PT CE C +L      + L C  C    H +C T++   CG+
Sbjct: 12  PHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A Length = 52

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
            H    K       C+IC             CQ C +  H  C T++   C
Sbjct: 3   THNFARKTFLKLAFCDICQKFL-L---NGFRCQTCGYKFHEHCSTKVPTMC 49

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAAR 131
            H+ +      PT C+ C SL    I + + C  C    H++C   +   CG+  +    
Sbjct: 17  KHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKRG 76

Query: 132 SHGHRV 137
               + 
Sbjct: 77  RIYLKA 82

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A* Length = 50

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
           H  +      PT C+ C SL    +++ L C++C    H KC  ++   C
Sbjct: 1   HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
            H+ +      P  C++C  +     +  L C+NC+   H  C + +  + 
Sbjct: 17  PHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQR 67

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 16/96 (16%), Positives = 32/96 (33%)

Query: 36  GSIEAEKPRSGKAKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKW 95
           G  +               +  +K + +Q++      H+  ++    PT C  C      
Sbjct: 1   GMADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWG 60

Query: 96  PIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAAR 131
             ++   CQ C    H++C+  +   C  A    A 
Sbjct: 61  FGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPAS 96

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 86  CEICNSLFKWPIERMLVCQNCRHTCHRKCYT 116
           C IC   +      M++C  C    H+ C+T
Sbjct: 9   CTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 76  ESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
           +   + +  AC +C  +      +++ CQ C +  H+ C+
Sbjct: 9   DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCH 48

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 71  LGHELESKIINIP---TACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
           +GH     + ++      C IC          +L C  C    H++CY
Sbjct: 1   MGHHHHHHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECY 48

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A Length = 49

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 77  SKIINIPTACEICN-SLFKWPIERMLVCQNCRHTCHRKC 114
           S    +   C +C  S+        + C++CR  CH KC
Sbjct: 8   STKSWLSQVCNVCQKSMIFG-----VKCKHCRLKCHNKC 41

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 11/68 (16%)

Query: 48  AKRTKERKKDKKASRKQEDRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCR 107
           A+  +  +K    S                 +I+    C IC          +L C  C 
Sbjct: 1   ARTKQTARKSTGGSSGSSQ-----------SLIDEDAVCSICMDGESQNSNVILFCDMCN 49

Query: 108 HTCHRKCY 115
              H++CY
Sbjct: 50  LAVHQECY 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	625
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	100.0
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	100.0
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	100.0
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	100.0
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	100.0
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	100.0
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	100.0
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	100.0
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	100.0
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	100.0
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	100.0
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	100.0
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	100.0
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	100.0
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	100.0
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.97
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	99.96
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	99.96
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	99.96
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	99.96
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	99.96
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	99.96
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	99.96
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	99.96
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	99.96
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	99.96
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	99.95
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	99.95
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	99.94
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.93
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.93
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	99.92
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	99.41
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	99.38
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	99.3
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	99.28
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	99.28
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	99.27
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	99.26
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	99.25
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	99.24
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	99.18
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	99.17
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	99.17
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	99.1
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.76
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	98.75
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.46
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	98.34
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.84
1r79_A	84	Diacylglycerol kinase, delta; C1 domain, cystein-r	96.07

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=100.00  E-value=5.1e-50  Score=440.25  Aligned_cols=253  Identities=30%  Similarity=0.566  Sum_probs=228.9

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccccCCcccccceeecccccccccC
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSSAARSHGHRVFGVPLSQLSSS  148 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~~~~~~~~~~~~FG~~L~~l~~~  148 (625)
                      ..++|.|..+++..||+|++|++++||.++||++|.+|++.||++|...++..|+...     ....++||++|+.++..
T Consensus       206 iv~~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~C~~~~-----~~~~~vFG~~L~~~~~~  280 (463)
T 3cxl_A          206 YEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDL-----KHVKKVYSCDLTTLVKA  280 (463)
T ss_dssp             -CBCCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSBCCGGG-----GGCCCCTTSCHHHHHHH
T ss_pred             cCCCcceEEeecCCCCcchhhhhhhhhHHhcCeeccccCccccccccccccccccccc-----cccccccccccchhhhc
Confidence            4678999999999999999999998888899999999999999999999999997653     23467999999998875


Q ss_pred             -CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcC-CCCCCCcc-CcChHHHHHHHHHHHHhCCCCCCC
Q psy10137        149 -DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG-KLPELELE-VYSVHILANLLKLFLREMPEPLLT  225 (625)
Q Consensus       149 -~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g-~~~~~~~~-~~d~~~va~~lK~fLr~Lp~pLl~  225 (625)
                       ...||.+|..|+++|+++|+.+|||||++|+.+.+++|++.||++ +..++... ..|+|+||++||.|||+||+||+|
T Consensus       281 ~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~  360 (463)
T 3cxl_A          281 HTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLIT  360 (463)
T ss_dssp             HTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSC
T ss_pred             cCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCC
Confidence             448999999999999999999999999999999999999999984 22333322 249999999999999999999999


Q ss_pred             hhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchh
Q psy10137        226 FEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQD  303 (625)
Q Consensus       226 ~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~  303 (625)
                      +++|+.|+++++..+  +++++++.++.+||++|+.||.+|+.||++|+++++.|+||+.|||+||||+|++++..+...
T Consensus       361 ~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~  440 (463)
T 3cxl_A          361 YDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMA  440 (463)
T ss_dssp             TTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCSCTTG
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCccHHH
Confidence            999999999998654  789999999999999999999999999999999999999999999999999999997666667


Q ss_pred             hHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        304 ALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       304 ~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      .+.++..+..+|++||+|+..||
T Consensus       441 ~~~~~~~~~~vve~LI~~~~~iF  463 (463)
T 3cxl_A          441 ALNDIRYQRLVVELLIKNEDILF  463 (463)
T ss_dssp             GGGGHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhchhhcC
Confidence            78899999999999999998887

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.5e-41  Score=333.18  Aligned_cols=195  Identities=31%  Similarity=0.554  Sum_probs=173.7

Q ss_pred             cceeecccccccccC-CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccC-cChHHHHHH
Q psy10137        134 GHRVFGVPLSQLSSS-DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEV-YSVHILANL  211 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~-~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~-~d~~~va~~  211 (625)
                      ..++||++|..++.. +..||.++.+|+.+|+++|+++|||||++|+..++++|++.+++|....++... .|+|+||++
T Consensus        16 ~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~l   95 (214)
T 3byi_A           16 KDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGA   95 (214)
T ss_dssp             CCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHH
T ss_pred             cCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHH
Confidence            457999999998874 448999999999999999999999999999999999999999998543333223 399999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      ||.|||+||+||+|+++|+.|+.+.+..+  +++++++.++.+||++|+.||.+|+.||++|+++++.|+||++|||+||
T Consensus        96 LK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa~vf  175 (214)
T 3byi_A           96 LKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVF  175 (214)
T ss_dssp             HHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhHHHh
Confidence            99999999999999999999999998655  7899999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137        290 APCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA  329 (625)
Q Consensus       290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~  329 (625)
                      ||+|+|++.... ....++..+..+|++||+|+.+||+++
T Consensus       176 ~P~Ll~~~~~~~-~~~~~~~~~~~vve~LI~~~~~iF~~d  214 (214)
T 3byi_A          176 GPTLLRAENETG-NMAIHMVYQNQIAELMLSEYSKIFGSE  214 (214)
T ss_dssp             HHHHHCCTTSSS-CHHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred             ccccCCCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999865432 234577889999999999999999875

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=331.08  Aligned_cols=193  Identities=33%  Similarity=0.612  Sum_probs=173.9

Q ss_pred             cceeecccccccccCC-CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcC-CCCCCCccC-cChHHHHH
Q psy10137        134 GHRVFGVPLSQLSSSD-GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEG-KLPELELEV-YSVHILAN  210 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~~-~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g-~~~~~~~~~-~d~~~va~  210 (625)
                      ..++||++|+.++..+ ..||.++.+|+++|+++|+.+|||||++|+..++++|++.|++| ...++.... .|+|+||+
T Consensus         5 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~   84 (202)
T 2osa_A            5 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG   84 (202)
T ss_dssp             --CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred             CCCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHH
Confidence            3569999999988754 48999999999999999999999999999999999999999984 323333222 59999999


Q ss_pred             HHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhh
Q psy10137        211 LLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV  288 (625)
Q Consensus       211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaiv  288 (625)
                      +||.|||+||+||+|+++|+.|+.+.+..+  +++++++.++.+||++|+.||.+|+.||++|+++++.|+||++|||+|
T Consensus        85 lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v  164 (202)
T 2osa_A           85 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV  164 (202)
T ss_dssp             HHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            999999999999999999999999988754  789999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        289 FAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       289 f~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |||+|+|++..+....+.++..+..+|++||+|+..||
T Consensus       165 f~P~Ll~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF  202 (202)
T 2osa_A          165 FGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF  202 (202)
T ss_dssp             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             HccccCCCCCccHHHHHHHHHHHHHHHHHHHHcccccC
Confidence            99999999766666678899999999999999999887

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=100.00  E-value=2.2e-41  Score=333.45  Aligned_cols=197  Identities=27%  Similarity=0.476  Sum_probs=176.3

Q ss_pred             cccceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHH
Q psy10137        132 SHGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL  211 (625)
Q Consensus       132 ~~~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~  211 (625)
                      ....++||++|.+++..+..||.++.+|+++|+++|+.+|||||++|+..++++|++.|++|...++....+|+|+||++
T Consensus         7 ~~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~l   86 (209)
T 2ee4_A            7 GWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGA   86 (209)
T ss_dssp             SSCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHH
T ss_pred             CCCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHH
Confidence            34567999999999987789999999999999999999999999999999999999999998533222224799999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      ||.|||+||+||+|+++|+.|+++++..+  +++++++.++.+||++|+.||.+|+.||++|+++++.|+||++|||+||
T Consensus        87 LK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf  166 (209)
T 2ee4_A           87 LKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF  166 (209)
T ss_dssp             HHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence            99999999999999999999999998765  8899999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137        290 APCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA  329 (625)
Q Consensus       290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~  329 (625)
                      ||+|+|++..+ ...+.+...+..+|++||+|+..+|+++
T Consensus       167 ~P~L~~~~~~~-~~~l~~~~~~~~vve~LI~~~~~iF~~~  205 (209)
T 2ee4_A          167 WPTLMRPDFEN-REFLSTTKIHQSVVETFIQQCQFFFYNG  205 (209)
T ss_dssp             HHHHSCCCCCS-SCCSCCCTTHHHHHHHHHHTHHHHTTCC
T ss_pred             cccccCCCCcc-HHHHHHhHHHHHHHHHHHHhhHHHcCCC
Confidence            99999986433 2345566778899999999999999754

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=100.00  E-value=6e-41  Score=334.85  Aligned_cols=203  Identities=32%  Similarity=0.571  Sum_probs=166.5

Q ss_pred             cccccceeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccC--cChH
Q psy10137        130 ARSHGHRVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEV--YSVH  206 (625)
Q Consensus       130 ~~~~~~~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~--~d~~  206 (625)
                      ++..+.++||++|.+++...+ .||.+|.+|+++|+++|+ +|||||++|+..++++|++.|++|....+..+.  +|+|
T Consensus        14 ~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh   92 (229)
T 3iug_A           14 LYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIH   92 (229)
T ss_dssp             ----CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHH
T ss_pred             CCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchH
Confidence            445667899999999877544 899999999999999999 799999999999999999999998654444332  4999


Q ss_pred             HHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccc
Q psy10137        207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS  284 (625)
Q Consensus       207 ~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~n  284 (625)
                      +||++||.|||+||+||+|+++|+.|+.+....+  +++..++.++.+||++|+.||.||+.||++|+++++.|+||++|
T Consensus        93 ~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  172 (229)
T 3iug_A           93 SVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKN  172 (229)
T ss_dssp             HHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChHH
Confidence            9999999999999999999999999999988654  88999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccCCCC-----chhhHHhhHHHHHHHHHHHHhhHHHhhhhHhhh
Q psy10137        285 LAIVFAPCILRQRHFP-----AQDALSDISRQTLCIELIISEQLKKLADALSDI  333 (625)
Q Consensus       285 Laivf~P~Llr~~~~~-----~~~~~~~~~~~~~~ve~lI~~~~~if~d~~~~~  333 (625)
                      ||+||||+|+|++...     ....+.++..+..+|++||+|+..||+++....
T Consensus       173 LAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~~  226 (229)
T 3iug_A          173 LAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMA  226 (229)
T ss_dssp             HHHHHHHHHCCC-------------------CHHHHHHHHHTHHHHTC------
T ss_pred             HHHHHhccccCCCcccccccchHHHHHHHHHHHHHHHHHHHhHHHhCCCcHHhh
Confidence            9999999999986422     234567888999999999999999999876543

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=333.49  Aligned_cols=194  Identities=29%  Similarity=0.534  Sum_probs=178.1

Q ss_pred             cceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHH
Q psy10137        134 GHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLK  213 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK  213 (625)
                      ...+||++|..++..++.||.+|.+|+++|+++|+.+|||||++|+..++++|++.|++|....+...++|+|+||++||
T Consensus        50 ~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK  129 (246)
T 3fk2_A           50 ESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMK  129 (246)
T ss_dssp             CCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHH
T ss_pred             CCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHH
Confidence            45699999999998888999999999999999999999999999999999999999999865555445679999999999


Q ss_pred             HHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccc
Q psy10137        214 LFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAP  291 (625)
Q Consensus       214 ~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P  291 (625)
                      .|||+||+||+|+++|+.|+.+.+..+  +++.+++.++.+||++|+.||.||+.||++|+++++.|+||+.|||+||||
T Consensus       130 ~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P  209 (246)
T 3fk2_A          130 SFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWP  209 (246)
T ss_dssp             HHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHH
T ss_pred             HHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcc
Confidence            999999999999999999999988765  789999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        292 CILRQRHFPAQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       292 ~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      +|+|++. ...+.+.++..+..+|++||+|+..||.+
T Consensus       210 ~Llrp~~-~~~~~~~~~~~~~~ive~LI~~~~~iF~n  245 (246)
T 3fk2_A          210 TLMRPDF-STMDALTATRTYQTIIELFIQQCPFFFYN  245 (246)
T ss_dssp             HHHCCCS-SSSCHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred             cccCCCC-ccHHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence            9999854 34556778888899999999999999965

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=100.00  E-value=1.5e-40  Score=324.70  Aligned_cols=189  Identities=30%  Similarity=0.569  Sum_probs=173.0

Q ss_pred             cceeecccccccccCCC---CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHHHH
Q psy10137        134 GHRVFGVPLSQLSSSDG---KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHILA  209 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~~~---~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~va  209 (625)
                      +.++||++|+.++...+   .||.++.+|+++|+++|+.+|||||++|+..++++|++.|++|.  .++++.+ |+|++|
T Consensus         5 ~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~--~~~~~~~~d~~~~a   82 (198)
T 1tx4_A            5 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGL--PVDFDQYNALHLPA   82 (198)
T ss_dssp             TTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTC--CCCGGGSSCTHHHH
T ss_pred             CCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCC--CCCccccccchHHH
Confidence            45699999999987543   89999999999999999999999999999999999999999985  3455554 899999


Q ss_pred             HHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhh
Q psy10137        210 NLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV  288 (625)
Q Consensus       210 ~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaiv  288 (625)
                      ++||.|||+||+||+|+++|+.|+++.+.++ +++++++.++.+||++|+.||.+|+.||++|+++++.|+||++|||+|
T Consensus        83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v  162 (198)
T 1tx4_A           83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV  162 (198)
T ss_dssp             HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhh
Confidence            9999999999999999999999999887655 889999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        289 FAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       289 f~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |||+|+|++.  ....+.++.....++++||+|+.+||
T Consensus       163 f~P~Ll~~~~--~~~~~~~~~~~~~~v~~LI~~~~~iF  198 (198)
T 1tx4_A          163 FGPNLLWAKD--AAITLKAINPINTFTKFLLDHQGELF  198 (198)
T ss_dssp             HHHHHCCCSS--HHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             hcccccCCCC--ccccHHHHHHHHHHHHHHHHhHHHhC
Confidence            9999999853  34567888889999999999999887

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.6e-40  Score=322.87  Aligned_cols=191  Identities=26%  Similarity=0.489  Sum_probs=168.7

Q ss_pred             ccceeecccccccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHH
Q psy10137        133 HGHRVFGVPLSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLL  212 (625)
Q Consensus       133 ~~~~~FG~~L~~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~l  212 (625)
                      .++++||++|++++.. +.||.++.+|+++|+++|+.+|||||++|+...+++|++.+++|.  .++++.+|+|+||++|
T Consensus         8 ~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~--~~~~~~~d~~~va~lL   84 (201)
T 3msx_B            8 MPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGV--EVHLDCESIFVIASVL   84 (201)
T ss_dssp             --CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTC--CCCTTSSCHHHHHHHH
T ss_pred             CCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCC--CCCCCcccHHHHHHHH
Confidence            3467999999998864 469999999999999999999999999999999999999999985  4566778999999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |.|||+||+||+|+++|+.|+.+.+..+  ++++.++.++.+||++|+.||.+|+.||++|+++++.|+||++|||+|||
T Consensus        85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~  164 (201)
T 3msx_B           85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVA  164 (201)
T ss_dssp             HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhhh
Confidence            9999999999999999999999987654  78999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchhhHHh-hHHHHHHHHHHHHhhHHHh
Q psy10137        291 PCILRQRHFPAQDALSD-ISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       291 P~Llr~~~~~~~~~~~~-~~~~~~~ve~lI~~~~~if  326 (625)
                      |+|+|++.........+ ......+|++||+||.+||
T Consensus       165 P~ll~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~IF  201 (201)
T 3msx_B          165 PSILWPPASSSPELENEFTKKVSLLIQFLIENCLRIF  201 (201)
T ss_dssp             HHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCCCChHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence            99999965433222222 3344456999999999987

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=100.00  E-value=1.2e-39  Score=327.73  Aligned_cols=193  Identities=29%  Similarity=0.555  Sum_probs=174.1

Q ss_pred             ccceeecccccccccCCC---CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHHH
Q psy10137        133 HGHRVFGVPLSQLSSSDG---KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHIL  208 (625)
Q Consensus       133 ~~~~~FG~~L~~l~~~~~---~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~v  208 (625)
                      .+.++||++|+.++..++   .||.++.+|+++|+++|+.+|||||++|+..++++|++.|++|.  .++++.+ |+|++
T Consensus        40 ~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~--~~~~~~~~dv~~v  117 (242)
T 1ow3_A           40 LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGL--PVDFDQYNELHLP  117 (242)
T ss_dssp             CTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTC--CCCGGGSSCTHHH
T ss_pred             CCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCC--CCCcccccchHHH
Confidence            446799999999887543   89999999999999999999999999999999999999999985  3455554 89999


Q ss_pred             HHHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhh
Q psy10137        209 ANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAI  287 (625)
Q Consensus       209 a~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLai  287 (625)
                      |++||.|||+||+||+|+++|+.|+++.+.++ +++++++.++.+||++|+.||.+|+.||++|+++++.|+||++|||+
T Consensus       118 a~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  197 (242)
T 1ow3_A          118 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV  197 (242)
T ss_dssp             HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHH
Confidence            99999999999999999999999999887655 88999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137        288 VFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA  329 (625)
Q Consensus       288 vf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~  329 (625)
                      ||||+|+|++.  ....+.++.....++++||+|+..||++.
T Consensus       198 vf~P~Ll~~~~--~~~~~~~~~~~~~~v~~LI~~~~~iF~~~  237 (242)
T 1ow3_A          198 VFGPNLLWAKD--AAITLKAINPINTFTKFLLDHQGELFPSP  237 (242)
T ss_dssp             HHHHHHCCCSS--HHHHHHTHHHHHHHHHHHHHTHHHHC---
T ss_pred             hhcchhCCCCC--ccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999853  44567888889999999999999999764

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=100.00  E-value=2.9e-39  Score=322.83  Aligned_cols=195  Identities=31%  Similarity=0.527  Sum_probs=157.7

Q ss_pred             ceeecccccccccCCC----CccceeeechhhhhhcccccccccccCCCHHHHHHHHH-HHhcCCCCCCCcc---CcChH
Q psy10137        135 HRVFGVPLSQLSSSDG----KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKT-KIDEGKLPELELE---VYSVH  206 (625)
Q Consensus       135 ~~~FG~~L~~l~~~~~----~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~-~~~~g~~~~~~~~---~~d~~  206 (625)
                      .++||++|...+..+.    .+|.+|.+|+.+|+++|+.+|||||++|+..++++|++ .+|.|....++++   .+|+|
T Consensus        16 ~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh   95 (231)
T 1f7c_A           16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIK   95 (231)
T ss_dssp             ---------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHH
T ss_pred             CCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHH
Confidence            3589999998776433    57999999999999999999999999999999999997 5787653445554   47999


Q ss_pred             HHHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccc
Q psy10137        207 ILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNS  284 (625)
Q Consensus       207 ~va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~n  284 (625)
                      +||++||.|||+||+||+|+++|+.|+.+++..+  +++.+++.++.+||++|+.||.+|+.||++|+++++.|+||++|
T Consensus        96 ~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  175 (231)
T 1f7c_A           96 TITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN  175 (231)
T ss_dssp             HHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            9999999999999999999999999999998755  78999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        285 LAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       285 Laivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      ||+||||+|+|++.. ....+.++..+..+|++||+|+..||++.-
T Consensus       176 LAivf~P~Ll~~~~~-~~~~~~~~~~~~~vve~LI~~~~~iF~~~~  220 (231)
T 1f7c_A          176 LGVVFGPTLLRPQEE-TVAAIMDIKFQNIVIEILIENHEKIFNTVP  220 (231)
T ss_dssp             HHHHHHHHHSCC----CCSGGGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred             HHHHhccccCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999998643 234567888999999999999999998664

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=100.00  E-value=2.4e-38  Score=309.60  Aligned_cols=189  Identities=33%  Similarity=0.499  Sum_probs=167.6

Q ss_pred             ccccccccC-CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCc-ChHHHHHHHHHHHH
Q psy10137        140 VPLSQLSSS-DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLR  217 (625)
Q Consensus       140 ~~L~~l~~~-~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~-d~~~va~~lK~fLr  217 (625)
                      ..|++++.. ...||.++.+|+++|+++|+++|||||++|+..++++|++.|++|... .+++.+ |+|+||++||.|||
T Consensus         4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~-~~~~~~~d~h~va~lLK~flr   82 (201)
T 2ovj_A            4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTV-PLLSKVDDIHAICSLLKDFLR   82 (201)
T ss_dssp             CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSC-CCGGGCCCHHHHHHHHHHHHH
T ss_pred             CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHH
Confidence            346666664 448999999999999999999999999999999999999999998532 234555 99999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccc
Q psy10137        218 EMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILR  295 (625)
Q Consensus       218 ~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr  295 (625)
                      +||+||+|+++|+.|+++.+..+  +++++++.++.+||++|+.||.+|+.||++|+++ +.|+||++|||+||||+|+|
T Consensus        83 eLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~  161 (201)
T 2ovj_A           83 NLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA  161 (201)
T ss_dssp             TSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred             hCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence            99999999999999999998765  7889999999999999999999999999999997 57999999999999999999


Q ss_pred             cCCC--CchhhHHhhHHHHHHHHHHHHhhHHHhhhhH
Q psy10137        296 QRHF--PAQDALSDISRQTLCIELIISEQLKKLADAL  330 (625)
Q Consensus       296 ~~~~--~~~~~~~~~~~~~~~ve~lI~~~~~if~d~~  330 (625)
                      ++..  +....+.++..+..+|++||+|+.++|+.-.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~if~~f~  198 (201)
T 2ovj_A          162 HAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQFM  198 (201)
T ss_dssp             CSSSSCCHHHHHHHHHHHHHHHHHHHHSCHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            8532  2345678999999999999999999997643

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=100.00  E-value=2.6e-39  Score=320.04  Aligned_cols=189  Identities=22%  Similarity=0.429  Sum_probs=160.7

Q ss_pred             ceeecccccccccC---CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHH
Q psy10137        135 HRVFGVPLSQLSSS---DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANL  211 (625)
Q Consensus       135 ~~~FG~~L~~l~~~---~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~  211 (625)
                      ..+||++|++++..   ...||.+|.+|+++|+++|+.+|||||++|+..+ ++|++.|++|. ..++++.+|+|+||++
T Consensus         5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~-~~~~~~~~dv~~va~l   82 (216)
T 1pbw_A            5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDT-PSVDLEMIDVHVLADA   82 (216)
T ss_dssp             -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSS-SCCCGGGBCHHHHHHH
T ss_pred             cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCC-CCCCccccCHHHHHHH
Confidence            45899999999873   3489999999999999999999999999999999 99999999974 3567778899999999


Q ss_pred             HHHHHHhCCCCCCChhhHHHHHHHhc-Cch--HHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchh
Q psy10137        212 LKLFLREMPEPLLTFEYYEEFLRAAD-LTE--DRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLA  286 (625)
Q Consensus       212 lK~fLr~Lp~pLl~~~~y~~~l~~~~-~~~--~~~~~l~~~l~--~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLa  286 (625)
                      ||.|||+||+||+|+++|+.|+.+.+ ..+  ++++.++.++.  +||+.|+.||.||+.||++|+++++.|+||++|||
T Consensus        83 LK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA  162 (216)
T 1pbw_A           83 FKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS  162 (216)
T ss_dssp             HHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence            99999999999999999999999985 333  78999999999  99999999999999999999999999999999999


Q ss_pred             hhccccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHhhhh
Q psy10137        287 IVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQLKKLADA  329 (625)
Q Consensus       287 ivf~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if~d~  329 (625)
                      +||||+|+|++.....   .+ ..+..+|++||+|+..||+..
T Consensus       163 ivf~P~Ll~~~~~~~~---~~-~~~~~vve~LI~~~~~iF~~~  201 (216)
T 1pbw_A          163 EIFSPMLFRFSAASSD---NT-ENLIKVIEILISTEWNERQPA  201 (216)
T ss_dssp             HHHHHHHHTCSSCCHH---HH-HHHHHHHHHHHHTTC------
T ss_pred             HHHhhhcCCCCCCchh---hh-HHHHHHHHHHHhhhHHhcCCC
Confidence            9999999999654332   23 889999999999999999653

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=315.89  Aligned_cols=169  Identities=27%  Similarity=0.462  Sum_probs=153.7

Q ss_pred             CcccccceeecccccccccC-CCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHH
Q psy10137        129 AARSHGHRVFGVPLSQLSSS-DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHI  207 (625)
Q Consensus       129 ~~~~~~~~~FG~~L~~l~~~-~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~  207 (625)
                      .++...+++||++|..++.. +..||.+|.+|+++|+++|+.+|||||++|+..++++|++.++.+. ..++++++|+|+
T Consensus        12 ~~~~~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~-~~~~~~~~~~~~   90 (228)
T 3kuq_A           12 ENLYFQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAI-DCVNYEGQSAYD   90 (228)
T ss_dssp             --CBCTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSS-SCCCCTTCCHHH
T ss_pred             CCCCCCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCC-CcCCcccCCHHH
Confidence            34456778999999998864 4589999999999999999999999999999999999999998753 346677889999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccch
Q psy10137        208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL  285 (625)
Q Consensus       208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nL  285 (625)
                      ||++||.|||+||+||+|+++|+.|+.+++..+  +++++++.++.+||++|+.||.+|+.||++|+++++.|+||+.||
T Consensus        91 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL  170 (228)
T 3kuq_A           91 VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL  170 (228)
T ss_dssp             HHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHh
Confidence            999999999999999999999999999986443  789999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccCC
Q psy10137        286 AIVFAPCILRQRH  298 (625)
Q Consensus       286 aivf~P~Llr~~~  298 (625)
                      |+||||+|||++.
T Consensus       171 Aivf~P~Ll~~~~  183 (228)
T 3kuq_A          171 AVCLAPSLFHLNT  183 (228)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHhhhhcCCCC
Confidence            9999999999854

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=315.75  Aligned_cols=191  Identities=28%  Similarity=0.446  Sum_probs=159.5

Q ss_pred             cccceeeccccccccc----CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHH
Q psy10137        132 SHGHRVFGVPLSQLSS----SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHI  207 (625)
Q Consensus       132 ~~~~~~FG~~L~~l~~----~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~  207 (625)
                      ..++++||++|++++.    ..+.||.+|.+|+.+|++ |+.+|||||++|+...+++|++.||+|...   +..+|+|+
T Consensus        59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~---~~~~~~~~  134 (271)
T 3eap_A           59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCD  134 (271)
T ss_dssp             --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC--------CCCHHH
T ss_pred             CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC---cccccHHH
Confidence            3456799999999875    245799999999999985 899999999999999999999999998532   35679999


Q ss_pred             HHHHHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchh
Q psy10137        208 LANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLA  286 (625)
Q Consensus       208 va~~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLa  286 (625)
                      ||++||.|||+||+||+|+++|+.|+.+.+..+ ++...++.++..||++|+.||.||+.||++|+++++.|+||++|||
T Consensus       135 va~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  214 (271)
T 3eap_A          135 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLA  214 (271)
T ss_dssp             HHHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH
Confidence            999999999999999999999999999998876 6888888899999999999999999999999999999999999999


Q ss_pred             hhccccccccCCCCc---hhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        287 IVFAPCILRQRHFPA---QDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       287 ivf~P~Llr~~~~~~---~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      +||||+|+|++....   .....++..++.+|++||+|+.+||
T Consensus       215 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~IF  257 (271)
T 3eap_A          215 VIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIG  257 (271)
T ss_dssp             HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHTGGGTT
T ss_pred             HHHHhHhccCCCCccchhhhHHHHHHHHHHHHHHHHHhHHHHh
Confidence            999999999965222   1234677889999999999999998

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=100.00  E-value=9.6e-38  Score=307.04  Aligned_cols=180  Identities=25%  Similarity=0.286  Sum_probs=145.3

Q ss_pred             cceeeccccccccc---CCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHH
Q psy10137        134 GHRVFGVPLSQLSS---SDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN  210 (625)
Q Consensus       134 ~~~~FG~~L~~l~~---~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~  210 (625)
                      ..++||++|++++.   ....||.+|.+|+++|+++|+.+|||||++|+.     |++     +...++++.+|+|+||+
T Consensus        19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~-----~~~~~dl~~~dvh~va~   88 (214)
T 2xs6_A           19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT-----DWSLSDVDQWDTAALAD   88 (214)
T ss_dssp             ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC-----CCCCTTGGGCCHHHHHH
T ss_pred             CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh-----ccccCCCccCCHHHHHH
Confidence            45699999999887   234899999999999999999999999999999     333     22346677789999999


Q ss_pred             HHHHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhh
Q psy10137        211 LLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIV  288 (625)
Q Consensus       211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaiv  288 (625)
                      +||.|||+||+||+|+++|+.|+.+.+..+  +++.   .++.+||++|+.||.||+.||++|+++++.|+||++|||+|
T Consensus        89 lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv  165 (214)
T 2xs6_A           89 GIKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGAT  165 (214)
T ss_dssp             HHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHH
Confidence            999999999999999999999999987654  3333   78999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCC--------chhhHHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        289 FAPCILRQRHFP--------AQDALSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       289 f~P~Llr~~~~~--------~~~~~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      |||+|+|++...        ...++.++..+..+|++||+|  .+|..
T Consensus       166 f~P~Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n--~ife~  211 (214)
T 2xs6_A          166 FGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQE--HLEEQ  211 (214)
T ss_dssp             HHHHHHC------------------CCTTHHHHHHHHHHHH--HHHC-
T ss_pred             HhhhhcCCcccccccccccchhhhHHhHHHHHHHHHHHHhh--hcccc
Confidence            999999996532        245678999999999999987  45544

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.97  E-value=6.3e-32  Score=287.09  Aligned_cols=141  Identities=22%  Similarity=0.372  Sum_probs=131.4

Q ss_pred             CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCCCChhhHH
Q psy10137        151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE  230 (625)
Q Consensus       151 ~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLl~~~~y~  230 (625)
                      .||.+|.+|+.+|+++|+.+|||||++|+..++++|++.||.|...  ++. .|+|++|++||.|||+||+||+|+++|+
T Consensus       198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~--~~~-~dvh~va~lLK~fLReLPePLi~~~ly~  274 (366)
T 3qis_A          198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPE--TIP-GSNHSVAEALLIFLEALPEPVICYELYQ  274 (366)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCS--SCC-SCHHHHHHHHHHHHHHCSSCSSCHHHHH
T ss_pred             CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCC--ccc-cCHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            7899999999999999999999999999999999999999998643  333 3999999999999999999999999999


Q ss_pred             HHHHHhcCchHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCC
Q psy10137        231 EFLRAADLTEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH  298 (625)
Q Consensus       231 ~~l~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~  298 (625)
                      .|+.+.+..    +.++.++.+||++|+.||.||+.||++|+++++.|+||++|||+||||+|||++.
T Consensus       275 ~~~~~~~~~----~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~  338 (366)
T 3qis_A          275 RCLDSAYDP----RICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP  338 (366)
T ss_dssp             HHHHHTTCH----HHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhhhH----HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence            999998743    4578899999999999999999999999999999999999999999999999964

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=99.96  E-value=2.4e-30  Score=254.57  Aligned_cols=160  Identities=23%  Similarity=0.339  Sum_probs=140.3

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.++||||++|+.+++++|++.+++|...++...++|+|+||++||.|||+||+||+|.++|+.|+.+++..  ++++
T Consensus        41 ~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~  120 (209)
T 2ee4_A           41 TGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERL  120 (209)
T ss_dssp             TCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHH
T ss_pred             hCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHH
Confidence            58999999999999999999999999987554432357999999999999999999999999999999998764  4789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC-----CchhHHHHHHHHHHhHh
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK-----LPESELAIHSKIQELKT  525 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~-----~~~~~~~~~~~I~~l~~  525 (625)
                      +.++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+++..++.     .......+...|.++..
T Consensus       121 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~~l~~~~~~~~vve~LI~~~~~  200 (209)
T 2ee4_A          121 HALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQF  200 (209)
T ss_dssp             HHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSCCSCCCTTHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHHHHHHhHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999999999999999876542     12345677788888888


Q ss_pred             hcccCCc
Q psy10137        526 KIDEGKL  532 (625)
Q Consensus       526 ~~d~~~~  532 (625)
                      .|.++++
T Consensus       201 iF~~~~~  207 (209)
T 2ee4_A          201 FFYNGEI  207 (209)
T ss_dssp             HTTCCCC
T ss_pred             HcCCCCC
Confidence            8877653

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=99.96  E-value=5.7e-30  Score=252.79  Aligned_cols=135  Identities=28%  Similarity=0.504  Sum_probs=124.4

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~  449 (625)
                      +|+.++||||++|+.+++++|++.+|+|...+++...+ |+|+||++||.|||+||+||+|.++|+.|+.+.+..  +++
T Consensus        49 ~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~  128 (214)
T 3byi_A           49 RGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTR  128 (214)
T ss_dssp             HTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHH
T ss_pred             hCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHH
Confidence            58999999999999999999999999997655543334 999999999999999999999999999999998754  478


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++.++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+++..+.
T Consensus       129 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa~vf~P~Ll~~~~~~  186 (214)
T 3byi_A          129 IEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENET  186 (214)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHCCTTSS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhHHHhccccCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999987654

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=246.42  Aligned_cols=133  Identities=24%  Similarity=0.369  Sum_probs=124.1

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.++||||++|+.+++++|++.+++|...  +++.+|+|+||++||.|||+||+||+|.++|+.|+.+.+..  ++++
T Consensus        40 ~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~--~~~~~d~~~va~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~  117 (201)
T 3msx_B           40 KGPLTKGIFRQSANVKSCRELKEKLNSGVEV--HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKI  117 (201)
T ss_dssp             HGGGSTTTTTSCCCHHHHHHHHHHHHHTCCC--CTTSSCHHHHHHHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHH
T ss_pred             hCCCCCCeeeeCCCHHHHHHHHHHhccCCCC--CCCcccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHH
Confidence            5889999999999999999999999999744  45567999999999999999999999999999999998764  4789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +.++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+|++...
T Consensus       118 ~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~ll~~~~~~  174 (201)
T 3msx_B          118 NTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASS  174 (201)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCCCTTS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhhhccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999987654

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=247.05  Aligned_cols=135  Identities=27%  Similarity=0.531  Sum_probs=122.5

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccC-CCCCCCcCC-cchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEG-KLPELELEV-YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~-~~~~~~~~~-~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~  448 (625)
                      +|+.++||||++|+.+++++|++.+|++ ...+++... .|+|+||++||.|||+||+||+|.++|+.|+.+.+..  ++
T Consensus        38 ~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~  117 (202)
T 2osa_A           38 RGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDE  117 (202)
T ss_dssp             HCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHH
T ss_pred             hCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHH
Confidence            5899999999999999999999999985 333444323 4999999999999999999999999999999998764  47


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      +++.++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++...
T Consensus       118 ~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~vf~P~Ll~~~~~~  176 (202)
T 2osa_A          118 QLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD  176 (202)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHccccCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999987654

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=99.96  E-value=3e-29  Score=252.57  Aligned_cols=136  Identities=23%  Similarity=0.396  Sum_probs=126.2

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~~  450 (625)
                      +|+.++||||++|+.+++++|++.+|+|...++...++|+|+||++||.|||+||+||+|+++|+.|+.+....  ++++
T Consensus        82 ~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~  161 (246)
T 3fk2_A           82 TGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKL  161 (246)
T ss_dssp             HCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHH
T ss_pred             hCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHH
Confidence            58999999999999999999999999998766665667999999999999999999999999999999998764  4789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      +.++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+|+..+..
T Consensus       162 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llrp~~~~~  219 (246)
T 3fk2_A          162 HALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTM  219 (246)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHCCCSSSS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcccccCCCCccH
Confidence            9999999999999999999999999999999999999999999999999999765543

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=252.39  Aligned_cols=137  Identities=24%  Similarity=0.354  Sum_probs=123.4

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc--chHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL--TEDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~--~~~~~  450 (625)
                      +|+.++||||++|+.+++++|++.++.+. ..++++++|+|+||++||.|||+||+||||.++|+.|+.+++.  .++++
T Consensus        50 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~-~~~~~~~~~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~  128 (228)
T 3kuq_A           50 HCLDQVGLFRKSGVKSRIQALRQMNEGAI-DCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRL  128 (228)
T ss_dssp             HCTTSTTTTTSCCCHHHHHHHHHHHTBSS-SCCCCTTCCHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHH
T ss_pred             hCCCcCCeeecCCCHHHHHHHHHHHhcCC-CcCCcccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHH
Confidence            58999999999999999999999998764 2456677899999999999999999999999999999998875  35789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCc
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLP  510 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~  510 (625)
                      ++++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+||+++......
T Consensus       129 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~s  188 (228)
T 3kuq_A          129 QAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKREN  188 (228)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCC----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHHhhhhcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999987654433

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=99.96  E-value=1.8e-29  Score=246.29  Aligned_cols=131  Identities=30%  Similarity=0.525  Sum_probs=121.5

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc-hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~-~~~~  450 (625)
                      +|+.++||||++|+.+++++|++.+|+|...++  +.+ |+|++|++||.|||+||+||+|.++|+.|+.+.+.. ++++
T Consensus        40 ~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~--~~~~d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~  117 (198)
T 1tx4_A           40 HALTTEGIFRRSANTQVVREVQQKYNMGLPVDF--DQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRV  117 (198)
T ss_dssp             HCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCG--GGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHH
T ss_pred             hCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCc--cccccchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHH
Confidence            689999999999999999999999999975443  343 899999999999999999999999999999987654 4789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKID  505 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~  505 (625)
                      +.++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+++++
T Consensus       118 ~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~Ll~~~~  172 (198)
T 1tx4_A          118 PATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD  172 (198)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhhhcccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999764

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=99.96  E-value=3.8e-29  Score=247.14  Aligned_cols=133  Identities=20%  Similarity=0.377  Sum_probs=123.6

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~  449 (625)
                      +|+.++||||++|+.++ ++|++.||+|. ..++++.+|+|+||++||.|||+||+||||.++|+.|+.+.+.   .+++
T Consensus        39 ~gl~~eGIfR~sG~~~~-~~l~~~~d~~~-~~~~~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~  116 (216)
T 1pbw_A           39 KGLECSTLYRTQSSSNL-AELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEY  116 (216)
T ss_dssp             HHTTCTTTTSSCCSCCT-THHHHHSCSSS-SCCCGGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHH
T ss_pred             cCCCCCCeeeCCChHHH-HHHHHHHHcCC-CCCCccccCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            69999999999999999 99999999985 3456677899999999999999999999999999999999852   3478


Q ss_pred             HHHHHHHHh--hCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~--~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++.++.++.  +||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++.+.
T Consensus       117 ~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~  176 (216)
T 1pbw_A          117 IQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAAS  176 (216)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCc
Confidence            999999999  9999999999999999999999999999999999999999999987765

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=99.96  E-value=7.8e-29  Score=247.31  Aligned_cols=157  Identities=28%  Similarity=0.456  Sum_probs=126.2

Q ss_pred             ccccCCCCCCCCcccchHHHHHH-HhccCCCCCCCcC---CcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKT-KIDEGKLPELELE---VYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--  446 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~-~l~~~~~~~~~~~---~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--  446 (625)
                      +|+.++||||++|+.+++++|++ .+|.|....++++   .+|+|+||++||.|||+||+||+|.++|+.|+.+++..  
T Consensus        51 ~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~  130 (231)
T 1f7c_A           51 RGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQ  130 (231)
T ss_dssp             HCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSH
T ss_pred             hCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCH
Confidence            58899999999999999999987 5788754444443   47999999999999999999999999999999998764  


Q ss_pred             hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCCch-----hHHHHHHHHH
Q psy10137        447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKLPE-----SELAIHSKIQ  521 (625)
Q Consensus       447 ~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~~~-----~~~~~~~~I~  521 (625)
                      +++++.++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++.+.....     ....+...|.
T Consensus       131 ~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~  210 (231)
T 1f7c_A          131 ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIE  210 (231)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999876543221     1223444555


Q ss_pred             HhHhhccc
Q psy10137        522 ELKTKIDE  529 (625)
Q Consensus       522 ~l~~~~d~  529 (625)
                      ++...|..
T Consensus       211 ~~~~iF~~  218 (231)
T 1f7c_A          211 NHEKIFNT  218 (231)
T ss_dssp             THHHHHHS
T ss_pred             HHHHhCCC
Confidence            55554444

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=99.96  E-value=5.9e-29  Score=243.03  Aligned_cols=133  Identities=29%  Similarity=0.454  Sum_probs=120.9

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~~  449 (625)
                      +|+.++||||++|+.+++++|++.+++|.... +++.+ |+|+||++||.|||+||+||+|.++|+.|+.+.+..  +++
T Consensus        31 ~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~-~~~~~~d~h~va~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~  109 (201)
T 2ovj_A           31 RGLTETGLYRISGCDRTVKELKEKFLRVKTVP-LLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNS  109 (201)
T ss_dssp             HTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCC-CGGGCCCHHHHHHHHHHHHHTSSSCTTCTTTHHHHHHHHHCSSHHHH
T ss_pred             hCCCcCceeeeCCcHHHHHHHHHHHHcCCCCc-cccccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHH
Confidence            58999999999999999999999999986432 23455 999999999999999999999999999999998764  478


Q ss_pred             HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++.++.++.+||+.|+.+|.||+.||++|+++ +.|+||++|||+||||+|++++..+
T Consensus       110 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~~~~~  166 (201)
T 2ovj_A          110 IAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHAVPN  166 (201)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCCSSSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCCCCCC
Confidence            89999999999999999999999999999996 6899999999999999999976554

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=99.95  E-value=9.6e-29  Score=246.50  Aligned_cols=157  Identities=26%  Similarity=0.448  Sum_probs=130.4

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCC--cchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEV--YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~--~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~  448 (625)
                      +|+ +|||||++|+.+++++|++.+++|...++..+.  +|+|+||++||.|||+||+||+|.++|+.|+.+.+..  ++
T Consensus        51 ~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~  129 (229)
T 3iug_A           51 YGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE  129 (229)
T ss_dssp             HCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHH
T ss_pred             cCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHH
Confidence            467 799999999999999999999999866655433  4999999999999999999999999999999998764  47


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC-----------CchhHHHHH
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK-----------LPESELAIH  517 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~-----------~~~~~~~~~  517 (625)
                      ++..++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++....           .......+.
T Consensus       130 ~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~vve  209 (229)
T 3iug_A          130 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVE  209 (229)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCC-------------------CHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChHHHHHHHhccccCCCcccccccchHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999875321           111234555


Q ss_pred             HHHHHhHhhcccC
Q psy10137        518 SKIQELKTKIDEG  530 (625)
Q Consensus       518 ~~I~~l~~~~d~~  530 (625)
                      ..|.++...|...
T Consensus       210 ~LI~~~~~iF~~~  222 (229)
T 3iug_A          210 FILNHVDVLFSGR  222 (229)
T ss_dssp             HHHHTHHHHTC--
T ss_pred             HHHHhHHHhCCCc
Confidence            6666666666653

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=99.95  E-value=1.4e-28  Score=247.17  Aligned_cols=131  Identities=30%  Similarity=0.522  Sum_probs=121.6

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCc-chhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc-hHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVY-SVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT-EDRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~-d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~-~~~~  450 (625)
                      +|+.++||||++|+.+++++|++.+|+|...++  +.+ |+|++|++||.|||+||+||+|.++|+.|+.+.+.. ++++
T Consensus        76 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~--~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~  153 (242)
T 1ow3_A           76 HALTTEGIFRRSANTQVVREVQQKYNMGLPVDF--DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRV  153 (242)
T ss_dssp             HCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCG--GGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHH
T ss_pred             cCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCc--ccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHH
Confidence            589999999999999999999999999975443  444 899999999999999999999999999999987754 5789


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKID  505 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~  505 (625)
                      +.++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+++++
T Consensus       154 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~  208 (242)
T 1ow3_A          154 PATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD  208 (242)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCCC
Confidence            9999999999999999999999999999999999999999999999999999764

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.2e-27  Score=242.17  Aligned_cols=131  Identities=24%  Similarity=0.360  Sum_probs=111.1

Q ss_pred             cccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch-HHHHH
Q psy10137        374 QIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVST  452 (625)
Q Consensus       374 ~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~-~~~~~  452 (625)
                      |+.++||||++|+.+++++|++.||+|...   +..+|+|+||++||.|||+||+||||+++|+.|+.+.+..+ ++...
T Consensus        97 gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~---~~~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~  173 (271)
T 3eap_A           97 HIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKA  173 (271)
T ss_dssp             GTTC--------CHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC---cccccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHH
Confidence            689999999999999999999999998754   34679999999999999999999999999999999988754 67888


Q ss_pred             HHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        453 LFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       453 ~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|++++++.
T Consensus       174 ~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~  228 (271)
T 3eap_A          174 TLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGH  228 (271)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCc
Confidence            8889999999999999999999999999999999999999999999999988643

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.93  E-value=5.4e-26  Score=249.40  Aligned_cols=136  Identities=27%  Similarity=0.521  Sum_probs=123.3

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCC-CCCCCcCC-cchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGK-LPELELEV-YSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~-~~~~~~~~-~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~  448 (625)
                      +|+.++||||++|+.+++++|++.||++. ..+++.+. .|+|+||++||.|||+||+||||.++|+.|+.+++..  ++
T Consensus       299 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~  378 (463)
T 3cxl_A          299 RGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDE  378 (463)
T ss_dssp             HCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHH
T ss_pred             cCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHH
Confidence            68999999999999999999999999853 33444322 4999999999999999999999999999999998763  57


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      +++.++.++..||++|+.+|.||+.||++|+++++.|+||++|||+||||+|+++++...
T Consensus       379 ~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~  438 (463)
T 3cxl_A          379 QLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDA  438 (463)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCSCT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCccH
Confidence            899999999999999999999999999999999999999999999999999999887653

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.93  E-value=4.5e-26  Score=242.01  Aligned_cols=128  Identities=20%  Similarity=0.290  Sum_probs=117.0

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccchHHHHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTEDRVST  452 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~~~~~~  452 (625)
                      +|+.++||||++|+.+++++|++.+|+|...+++   .|+|++|++||.|||+||+||||+++|+.|+.+.+.    .+.
T Consensus       213 ~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~---~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~----~~~  285 (366)
T 3qis_A          213 YACHQEDLFQTPGMQEELQQIIDCLDTSIPETIP---GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYD----PRI  285 (366)
T ss_dssp             HCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSCC---SCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTC----HHH
T ss_pred             cCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCccc---cCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhh----HHH
Confidence            5889999999999999999999999999765433   399999999999999999999999999999999874    356


Q ss_pred             HHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        453 LFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       453 ~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++.++..||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|||++.+.
T Consensus       286 ~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~  340 (366)
T 3qis_A          286 CRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL  340 (366)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence            7889999999999999999999999999999999999999999999999988754

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=99.92  E-value=7e-27  Score=229.66  Aligned_cols=122  Identities=23%  Similarity=0.146  Sum_probs=102.8

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccch--HHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE--DRV  450 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~~--~~~  450 (625)
                      +|+.+|||||++|+.     |++   .+  ...+++.+|+|+||++||.|||+||+||||.++|+.|+++++..+  ++.
T Consensus        54 ~Gl~~eGIfR~sG~~-----lr~---~~--~~~dl~~~dvh~va~lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~  123 (214)
T 2xs6_A           54 TGLDSESHYRPELPA-----PRT---DW--SLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGP  123 (214)
T ss_dssp             HCTTCSGGGCCSCCC-----CCC---CC--CCTTGGGCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGG
T ss_pred             hCCCCCCCeeeCHHH-----HHh---cc--ccCCCccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHH
Confidence            489999999999988     443   12  235566789999999999999999999999999999999987643  233


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        451 STLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       451 ~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      .   .++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+|++.+.
T Consensus       124 ~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~  177 (214)
T 2xs6_A          124 A---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPP  177 (214)
T ss_dssp             G---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----
T ss_pred             H---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhhhcCCcccc
Confidence            2   68899999999999999999999999999999999999999999999988753

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=99.41  E-value=6e-14  Score=114.48  Aligned_cols=60  Identities=20%  Similarity=0.488  Sum_probs=55.3

Q ss_pred             cccccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137         66 DRIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        66 ~~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      +...++||.|..++|..||+|++|+++||++.+||++|++|+++||++|..+++..|...
T Consensus        17 ~~~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~   76 (77)
T 2enn_A           17 KVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGS   76 (77)
T ss_dssp             CCEESSSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCCCC
T ss_pred             ccccCCCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCCCC
Confidence            356689999999999999999999999888889999999999999999999999999753

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.2e-13  Score=112.88  Aligned_cols=60  Identities=23%  Similarity=0.523  Sum_probs=55.8

Q ss_pred             ccccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         67 RIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        67 ~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ...++||.|..++|..||+|++|+++||++.+||++|.+|+++||++|..+++..|....
T Consensus        12 ~~~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~   71 (83)
T 2yuu_A           12 IHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTA   71 (83)
T ss_dssp             EECGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCCSCCSSCC
T ss_pred             CcccCCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhhCCCcCCCcc
Confidence            556889999999999999999999998888899999999999999999999999998664

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=99.30  E-value=8.3e-13  Score=104.15  Aligned_cols=56  Identities=27%  Similarity=0.600  Sum_probs=52.4

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL  124 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~  124 (625)
                      ...+|.|..+++..||+|++|++++|+..+||++|++|+++||++|..+++..|+.
T Consensus         9 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~   64 (65)
T 2enz_A            9 IDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI   64 (65)
T ss_dssp             CCCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTSCSCTTT
T ss_pred             CCCCCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhCcCcCCC
Confidence            35799999999999999999999998888999999999999999999999999963

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.28  E-value=5.4e-13  Score=109.37  Aligned_cols=58  Identities=28%  Similarity=0.627  Sum_probs=53.3

Q ss_pred             ccccCCCeeceeEeccCCccccccccccccccc--ccccccccccccccccc---cccccccc
Q psy10137         67 RIVYLGHELESKIINIPTACEICNSLFKWPIER--MLVCQNCRHTCHRKCYT---RIMGECGL  124 (625)
Q Consensus        67 ~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~q--g~~C~~C~~~~HkkC~~---~i~~~C~~  124 (625)
                      .+.++||.|..++|..||+|++|+++||+.++|  |++|+.|+++||++|..   .++..|+.
T Consensus        19 ~~~~~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~   81 (84)
T 2row_A           19 YICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKV   81 (84)
T ss_dssp             CEEETTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCST
T ss_pred             eEEcCCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCc
Confidence            356889999999999999999999998888887  99999999999999999   68888974

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=99.28  E-value=5.5e-13  Score=105.23  Aligned_cols=59  Identities=24%  Similarity=0.475  Sum_probs=54.3

Q ss_pred             cccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        68 ~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ..+++|.|..+++..|++|++|++++|+..+||++|.+|++.+|++|..+++..|+.+.
T Consensus         5 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~~~   63 (65)
T 3uej_A            5 ASVGSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCEFIV   63 (65)
T ss_dssp             EEEEECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSEEEEEC
T ss_pred             eEeCCceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhCCCcCCCcc
Confidence            45789999999999999999999998888899999999999999999999999997553

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-12  Score=105.80  Aligned_cols=58  Identities=19%  Similarity=0.500  Sum_probs=53.0

Q ss_pred             cccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccc-ccccc
Q psy10137         68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG-ECGLA  125 (625)
Q Consensus        68 ~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~-~C~~~  125 (625)
                      ....+|.|..++|..||+|++|++++|+.++||++|++|++.||++|..+++. .|...
T Consensus        13 ~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~   71 (74)
T 2db6_A           13 VNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCSGP   71 (74)
T ss_dssp             SCSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGSSSBCCCC
T ss_pred             ccCCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCCCCcCCCC
Confidence            35689999999999999999999998887899999999999999999999986 58754

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=99.26  E-value=1.2e-12  Score=103.50  Aligned_cols=56  Identities=27%  Similarity=0.536  Sum_probs=49.5

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL  124 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~  124 (625)
                      ...+|.|..++|..||+|++|++++|+..+||++|.+|+++||++|..+++..|.+
T Consensus        10 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~   65 (66)
T 1y8f_A           10 GGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL   65 (66)
T ss_dssp             ---CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSCCCC--
T ss_pred             CCCCcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCcCcCCC
Confidence            35789999999999999999999988878999999999999999999999999964

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3.4e-12  Score=106.13  Aligned_cols=59  Identities=24%  Similarity=0.532  Sum_probs=54.5

Q ss_pred             cccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        68 ~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ....+|.|..++|..||+|++|++++|+..+||++|.+|++.||++|..+++..|+...
T Consensus        13 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~   71 (85)
T 2eli_A           13 DPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDH   71 (85)
T ss_dssp             CTTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCC
T ss_pred             CCCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcch
Confidence            34679999999999999999999998888899999999999999999999999998654

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=99.24  E-value=1.8e-12  Score=96.70  Aligned_cols=50  Identities=28%  Similarity=0.616  Sum_probs=47.5

Q ss_pred             CeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137         73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC  122 (625)
Q Consensus        73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C  122 (625)
                      |.|..+++..||+|++|++++||..+||++|++|++++|++|..+++..|
T Consensus         1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C   50 (50)
T 1ptq_A            1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC   50 (50)
T ss_dssp             CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred             CCCEeecCCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcCCCC
Confidence            89999999999999999999888789999999999999999999998876

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=99.18  E-value=4.3e-12  Score=97.79  Aligned_cols=52  Identities=29%  Similarity=0.682  Sum_probs=48.3

Q ss_pred             ccCCCeece-eEeccCCccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELES-KIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG  123 (625)
Q Consensus        69 ~~~~H~F~~-~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~  123 (625)
                      ...||.|.. +++..||+|++|++++   ++||++|++|+++||++|..+++..|+
T Consensus         7 ~~~~H~F~~~~~~~~pt~C~~C~~~i---~kqg~kC~~C~~~cH~kC~~~v~~~C~   59 (59)
T 1rfh_A            7 RGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR   59 (59)
T ss_dssp             CCSSCCCEECCCSSCCEECTTTCSEE---CSCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred             CCCCCcCeeeeccCCCeEchhcchhh---hhCccEeCCCCCeEehhhhhhCcCCCC
Confidence            357999999 9999999999999987   489999999999999999999999884

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=99.17  E-value=1e-11  Score=99.57  Aligned_cols=51  Identities=29%  Similarity=0.708  Sum_probs=47.8

Q ss_pred             cCCCeece-eEeccCCccccccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELES-KIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG  123 (625)
Q Consensus        70 ~~~H~F~~-~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~  123 (625)
                      ..||.|.. +++..||+|++|++++   ++||++|.+|+++||++|..+++..|.
T Consensus        21 ~~~H~F~~~~~~~~pt~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~~V~~~C~   72 (72)
T 2fnf_X           21 GEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR   72 (72)
T ss_dssp             CSSCCCEECCCCSSCCBCTTTSSBC---SSCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred             CCCCccceeecCCCCcchhhhhHHH---HhCcCccCCCCCeechhhhccCcCCCC
Confidence            47999999 9999999999999987   589999999999999999999999884

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=99.17  E-value=9.1e-12  Score=93.65  Aligned_cols=51  Identities=24%  Similarity=0.497  Sum_probs=47.3

Q ss_pred             cCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL  124 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~  124 (625)
                      +++|.|..++|..||+|++|++++|    ||++|++|++.+|++|..+++..|++
T Consensus         1 ~~~H~F~~~~~~~pt~C~~C~~~l~----qG~~C~~C~~~~H~~C~~~v~~~C~~   51 (52)
T 1faq_A            1 LTTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMCVD   51 (52)
T ss_dssp             CCCCCCEEECCSSCEECTTSSSEEC----SEEECTTTTCCBCSTTSSSSSSCCCC
T ss_pred             CCCceeEeEeCCCCcCCCCcccccc----cCCEeCCCCCeEChhHHhhCcCcCCC
Confidence            3689999999999999999999865    89999999999999999999999964

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=99.10  E-value=3.2e-11  Score=93.12  Aligned_cols=56  Identities=27%  Similarity=0.431  Sum_probs=50.5

Q ss_pred             ccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      ..++|+|..+++..|++|++|++.++ ..+||++|.+|++.||++|...++.+|.+.
T Consensus         5 ~~~~H~F~~kt~~~~~~C~~Cg~~i~-~gkq~~kC~dC~~~cH~~C~~~~~~~C~p~   60 (61)
T 4b6d_A            5 SMRLHDFVSKTVIKPESCVPCGKRIK-FGKLSLKCRDCRVVSHPECRDRCPLPCIPT   60 (61)
T ss_dssp             CBCCCCEEEEECCSCEECTTTCCEEC-TTCEEEEESSSSCEECGGGGGGSCSSCCCC
T ss_pred             cccceeEEeeeccCCcccccccCEEE-EeeEeeECCCCCCeEchhHhhcCCCCCCCC
Confidence            35789999999999999999999754 568999999999999999999999999753

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.76  E-value=8.3e-10  Score=126.57  Aligned_cols=59  Identities=20%  Similarity=0.383  Sum_probs=0.0

Q ss_pred             ccccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137         67 RIVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        67 ~~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      .+..+||.|..++|..||+|++|+.++||..+||++|..|+++||++|..+++..|...
T Consensus        32 ~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~   90 (674)
T 3pfq_A           32 VHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGA   90 (674)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CcccCCceEEeeeCCCCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCc
Confidence            45578999999999999999999999998899999999999999999999999999654

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=98.75  E-value=2.9e-09  Score=78.04  Aligned_cols=45  Identities=24%  Similarity=0.619  Sum_probs=39.9

Q ss_pred             CCCeeceeEeccCCcccccccccccccccccccccccccccccccccccc
Q psy10137         71 LGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMG  120 (625)
Q Consensus        71 ~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~  120 (625)
                      .+|.|..+++. +|+|++|++.||    +|++|.+|++.||++|..+++.
T Consensus         3 i~HrF~~~t~~-~t~C~~C~k~i~----~G~kC~~Ck~~cH~kC~~~vp~   47 (49)
T 1kbe_A            3 VTHRFSTKSWL-SQVCNVCQKSMI----FGVKCKHCRLKCHNKCTKEAPA   47 (49)
T ss_dssp             CCCCEEEECCS-SCCCSSSCCSSC----CEEEETTTTEEESSSCTTTSCC
T ss_pred             CCcccCccCCC-CcCccccCceeE----CcCCCCCCCCccchhhcCcCCC
Confidence            57999999987 699999999875    5799999999999999997654

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.46  E-value=4.9e-08  Score=110.04  Aligned_cols=57  Identities=25%  Similarity=0.600  Sum_probs=50.0

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ..+||.|..+++..||+|++|++++||...||++|..|++.||++|...+ ..|+...
T Consensus       515 ~~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~~  571 (587)
T 3ky9_A          515 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCGRHG  571 (587)
T ss_dssp             TGGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC----
T ss_pred             cccCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCCCCC
Confidence            45799999999999999999999988889999999999999999999999 4887553

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=98.34  E-value=1.5e-07  Score=101.14  Aligned_cols=57  Identities=25%  Similarity=0.564  Sum_probs=50.2

Q ss_pred             ccCCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ...||.|..+++..||+|.+|++++||..+||+.|..|++++|++|..+++. |+...
T Consensus       343 ~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~-C~~~~  399 (406)
T 2vrw_B          343 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPP-CGRHG  399 (406)
T ss_dssp             TGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCC-C----
T ss_pred             cCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCC-CCCCc
Confidence            4679999999999999999999998888899999999999999999999995 97553

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.84  E-value=6.5e-06  Score=94.22  Aligned_cols=56  Identities=25%  Similarity=0.567  Sum_probs=51.1

Q ss_pred             cCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      ...|.|..+++..|++|++|+++++++..||++|..|++.+|++|...++..|+..
T Consensus       100 ~~~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~d  155 (674)
T 3pfq_A          100 RSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTD  155 (674)
T ss_dssp             --CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSCCCSSSC
T ss_pred             cCCcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhhhhhccCcccccc
Confidence            35899999999999999999999888889999999999999999999999999643

>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1

Probab=96.07  E-value=0.0026  Score=51.88  Aligned_cols=57  Identities=14%  Similarity=0.390  Sum_probs=47.9

Q ss_pred             ccCCCeeceeEeccCCcccccccccccc-ccccccccccccccccccccccccccccc
Q psy10137         69 VYLGHELESKIINIPTACEICNSLFKWP-IERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        69 ~~~~H~F~~~~~~~pt~C~~C~~~i~~~-~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      ....|.|..-.+..+++|.+|.+.++.. .-+|++|.=|++++|.+|+..++..|...
T Consensus        24 ~~~~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~~~eC~lG   81 (84)
T 1r79_A           24 IAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGP   81 (84)
T ss_dssp             CCBCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSCBCCS
T ss_pred             ccceeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhccCcCCCC
Confidence            3567999999888889999999976542 23789999999999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	625
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	1e-44
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	1e-19
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	4e-17
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	1e-43
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	3e-21
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	3e-18
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	3e-40
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	2e-21
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	2e-18
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	4e-39
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	8e-21
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	7e-18
d1xa6a3	62	g.49.1.1 (A:209-270) Beta-chimaerin, middle domain	2e-10
d1tbna_	66	g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus	3e-10
d1ptqa_	50	g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {M	5e-10
d1faqa_	52	g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId:	2e-09
d1r79a_	84	g.49.1.1 (A:) Diacylglycerol kinase delta {Human (	2e-07
d1kbea_	49	g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse	1e-05
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	0.002
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	0.002

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 1e-44
 Identities = 54/192 (28%), Positives = 102/192 (53%), Gaps = 5/192 (2%)

Query: 136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK 194
           +V+   L+ L  +   + P +VD  I  IE RG+ +EG+YR SG    I+++K   D   
Sbjct: 1   KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDG 60

Query: 195 LPE--LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSIL 250
                       ++I+   LKL+ R++P P++T++ Y +F+ AA ++  ++R+  +  +L
Sbjct: 61  EKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVL 120

Query: 251 KTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISR 310
             LP  +++ +  L+ HL +V  +E+ N M   +L IVF P ++R         L D+  
Sbjct: 121 MLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRY 180

Query: 311 QTLCIELIISEQ 322
           Q L ++++I  +
Sbjct: 181 QKLIVQILIENE 192

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (209), Expect = 1e-19
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 387 HSKIQELKTKIDEGKLPE--LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 444
              I+++K   D               ++I+   LKL+ R++P P++T++ Y +F+ AA 
Sbjct: 46  TEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 105

Query: 445 LT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQEL 500
           ++  ++R+  +  +L  LP  +++ +  L+ HL +V  +E+ N M   +L IVF   L
Sbjct: 106 ISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTL 163

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 4e-17
 Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 517 HSKIQELKTKIDEGKLPE--LELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAAD 574
              I+++K   D               ++I+   LKL+ R++P P++T++ Y +F+ AA 
Sbjct: 46  TEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 105

Query: 575 LT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLD 623
           ++  ++R+  +  +L  LP  +++ +  L+ HL +V  +E+ N M   +L 
Sbjct: 106 ISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLG 156

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-43
 Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 7/191 (3%)

Query: 136 RVFGVPLSQLSSSDGK---VPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDE 192
           + FGV L  L   + +   +P ++   +  ++   + TEGI+R+S     ++E++ K + 
Sbjct: 5   QQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNM 64

Query: 193 GKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED-RVSTLFSILK 251
           G   + + +  ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ E  RV     +L+
Sbjct: 65  GLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 123

Query: 252 TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQ 311
           TLP+ N+ ++  L   L +++ H + N+MT  +LA+VF P +L  +   A   L  I+  
Sbjct: 124 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI 181

Query: 312 TLCIELIISEQ 322
               + ++  Q
Sbjct: 182 NTFTKFLLDHQ 192

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 3e-21
 Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)

Query: 387 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 446
              ++E++ K + G   + + +  ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ 
Sbjct: 52  TQVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID 110

Query: 447 ED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           E  RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +LA+VF 
Sbjct: 111 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFG 162

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 3e-18
 Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 2/107 (1%)

Query: 517 HSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT 576
              ++E++ K + G   + + +  ++H+ A +LK FLRE+PEPLLTF+ Y   +   ++ 
Sbjct: 52  TQVVREVQQKYNMGLPVDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID 110

Query: 577 ED-RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           E  RV     +L+TLP+ N+ ++  L   L +++ H + N+MT  +L
Sbjct: 111 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 157

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 3e-40
 Identities = 39/186 (20%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 142 LSQLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELE 201
           L++  +     P L+ +L+  IE +G+    +YR     S + EL+  +D    P ++LE
Sbjct: 4   LAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDCDT-PSVDLE 61

Query: 202 VYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTED---RVSTLFSILKTLP--KP 256
           +  VH+LA+  K +L ++P P++    Y E +  A   +     +  L  ++++      
Sbjct: 62  MIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQ 121

Query: 257 NFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIE 316
            +  ++ L+ H  +++     N +    L+ +F+P + R     +  +  +       IE
Sbjct: 122 YWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFR----FSAASSDNTENLIKVIE 177

Query: 317 LIISEQ 322
           ++IS +
Sbjct: 178 ILISTE 183

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 2e-21
 Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 388 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 447
           S + EL+  +D    P ++LE+  VH+LA+  K +L ++P P++    Y E +  A   +
Sbjct: 42  SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 100

Query: 448 D---RVSTLFSILKTLP--KPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
                +  L  ++++       +  ++ L+ H  +++     N +    L+ +F+
Sbjct: 101 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFS 155

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 2e-18
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 518 SKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLTE 577
           S + EL+  +D    P ++LE+  VH+LA+  K +L ++P P++    Y E +  A   +
Sbjct: 42  SNLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQ 100

Query: 578 D---RVSTLFSILKTLP--KPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
                +  L  ++++       +  ++ L+ H  +++     N +    L
Sbjct: 101 SSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL 150

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  140 bits (353), Expect = 4e-39
 Identities = 56/180 (31%), Positives = 100/180 (55%), Gaps = 7/180 (3%)

Query: 149 DGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPEL----ELEVYS 204
           D    S++ + I  +E RGI  +G+YR  G++S++Q+L + + + K            + 
Sbjct: 4   DSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWE 63

Query: 205 VHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--EDRVSTLFSILKTLPKPNFDLME 262
           +  + + LK +LR +P PL+ +++   F++AA L   E RVS + S++  LP+ N  ++ 
Sbjct: 64  IKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLH 123

Query: 263 RLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDALSDISRQTLCIELIISEQ 322
            L+ HLA+VA + + N MT  +L +VF P +LR +      A+ DI  Q + IE++I   
Sbjct: 124 LLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE-ETVAAIMDIKFQNIVIEILIENH 182

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 88.3 bits (218), Expect = 8e-21
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)

Query: 387 HSKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA 442
           +S++Q+L + + + K            + +  + + LK +LR +P PL+ +++   F++A
Sbjct: 35  NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKA 94

Query: 443 ADLT--EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA 497
           A L   E RVS + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L +VF 
Sbjct: 95  AKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFG 151

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.8 bits (196), Expect = 7e-18
 Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 517 HSKIQELKTKIDEGKLPEL----ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRA 572
           +S++Q+L + + + K            + +  + + LK +LR +P PL+ +++   F++A
Sbjct: 35  NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKA 94

Query: 573 ADL--TEDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSL 622
           A L   E RVS + S++  LP+ N  ++  L+ HLA+VA + + N MT  +L
Sbjct: 95  AKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANL 146

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG 123
            H  +      P  CE C +     I + + C +C    H++C   +  +C 
Sbjct: 4   THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQ 55

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} Length = 66

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGL 124
            H+      + PT C+ C SL    + + + C  C    HR+C   +   CG+
Sbjct: 8   KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGV 60

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
           H  +      PT C+ C SL    +++ L C++C    H KC  ++   C
Sbjct: 1   HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 72  GHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC 122
            H    K       C+IC             CQ C +  H  C T++   C
Sbjct: 3   THNFARKTFLKLAFCDICQKFLLN----GFRCQTCGYKFHEHCSTKVPTMC 49

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 63  KQEDRIVYLGHELESKIINIPTACEICNS-LFKWPIERMLVCQNCRHTCHRKCYTRIMGE 121
           +  D I  + H+     + +   C +C+         +   C  C+   H  C   ++ +
Sbjct: 19  EDADGIA-MPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTK 77

Query: 122 CGLARS 127
           C    S
Sbjct: 78  CSGPSS 83

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} Length = 49

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 73  HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRI 118
           H   +K       C +C     +     + C++CR  CH KC    
Sbjct: 5   HRFSTKSWLSQV-CNVCQKSMIF----GVKCKHCRLKCHNKCTKEA 45

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 84  TACEICNSLFKWPIERMLVCQNCRHTCHRKCY 115
            AC +C  +      +++ CQ C +  H+ C+
Sbjct: 17  LACVVCRQMTVASGNQLVECQECHNLYHQDCH 48

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)

Query: 86  CEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLARSS 128
           C+ C +  K P         C HT    C      +C + ++ 
Sbjct: 9   CQQCQAEAKCP-----KLLPCLHTLCSGCLEASGMQCPICQAP 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	625
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	99.95
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	99.94
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	99.94
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	99.94
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	99.25
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	99.24
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	99.14
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	98.83
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	98.63

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-40  Score=318.48  Aligned_cols=191  Identities=28%  Similarity=0.574  Sum_probs=174.0

Q ss_pred             eeecccccccccCCC-CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCC-CCCCCc-cCcChHHHHHHH
Q psy10137        136 RVFGVPLSQLSSSDG-KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGK-LPELEL-EVYSVHILANLL  212 (625)
Q Consensus       136 ~~FG~~L~~l~~~~~-~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~-~~~~~~-~~~d~~~va~~l  212 (625)
                      ++||++|+.++..++ .||.+|.+|+.||+++|+++|||||++|+..+++++++.++++. ...++. ..+|+|++|++|
T Consensus         1 kiFg~~L~~~~~~~~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~l   80 (196)
T d1xa6a1           1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGAL   80 (196)
T ss_dssp             CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHH
T ss_pred             CccCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHHHH
Confidence            489999999987655 89999999999999999999999999999999999999999843 233332 235899999999


Q ss_pred             HHHHHhCCCCCCChhhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhcc
Q psy10137        213 KLFLREMPEPLLTFEYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFA  290 (625)
Q Consensus       213 K~fLr~Lp~pLl~~~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~  290 (625)
                      |+|||+||+||+|.++|+.|+.+.+..+  +++++++.++.+||+.|+.+|.+|+.||++|+++++.|+||++|||+|||
T Consensus        81 K~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~f~  160 (196)
T d1xa6a1          81 KLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFG  160 (196)
T ss_dssp             HHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHHHT
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHhc
Confidence            9999999999999999999999988765  77899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        291 PCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       291 P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      |+|++++.......++++..++.+|++||+||..||
T Consensus       161 P~l~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF  196 (196)
T d1xa6a1         161 PTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF  196 (196)
T ss_dssp             TTSCCCCCSCTTGGGGTHHHHHHHHHHHHHTHHHHC
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence            999999776666778889999999999999999887

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=300.87  Aligned_cols=190  Identities=29%  Similarity=0.546  Sum_probs=171.6

Q ss_pred             cceeecccccccccCC---CCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHH
Q psy10137        134 GHRVFGVPLSQLSSSD---GKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILAN  210 (625)
Q Consensus       134 ~~~~FG~~L~~l~~~~---~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~  210 (625)
                      ++++||++|++++..+   ..||.++.+|+.||+++|+.+|||||++|+.+.++++++.+++|...++. ...|+|+||+
T Consensus         3 ~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~va~   81 (196)
T d1tx4a_           3 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD-QYNALHLPAV   81 (196)
T ss_dssp             TTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGG-GSSCTHHHHH
T ss_pred             CCCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCcccc-ccccHHHHHH
Confidence            4679999999987633   37999999999999999999999999999999999999999998644332 2348999999


Q ss_pred             HHHHHHHhCCCCCCChhhHHHHHHHhcCch-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhc
Q psy10137        211 LLKLFLREMPEPLLTFEYYEEFLRAADLTE-DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVF  289 (625)
Q Consensus       211 ~lK~fLr~Lp~pLl~~~~y~~~l~~~~~~~-~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf  289 (625)
                      +||+|||+||+||+|.++|+.|+.+....+ +++.+++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||
T Consensus        82 ~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~~f  161 (196)
T d1tx4a_          82 ILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF  161 (196)
T ss_dssp             HHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHhcChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999999999999987665 8889999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCchhhHHhhHHHHHHHHHHHHhhHHHh
Q psy10137        290 APCILRQRHFPAQDALSDISRQTLCIELIISEQLKKL  326 (625)
Q Consensus       290 ~P~Llr~~~~~~~~~~~~~~~~~~~ve~lI~~~~~if  326 (625)
                      ||+|+++++  ....++++...+.++++||+||.+||
T Consensus       162 ~P~l~~~~~--~~~~~~~~~~~~~~~~~LI~~~~~iF  196 (196)
T d1tx4a_         162 GPNLLWAKD--AAITLKAINPINTFTKFLLDHQGELF  196 (196)
T ss_dssp             HHHHCCCSS--HHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             hhhhcCCCC--cchhHHHHHHHHHHHHHHHHhHHhhC
Confidence            999999753  44566788899999999999999887

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=286.97  Aligned_cols=172  Identities=23%  Similarity=0.453  Sum_probs=151.7

Q ss_pred             ccccCCCCccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCCCCccCcChHHHHHHHHHHHHhCCCCC
Q psy10137        144 QLSSSDGKVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPL  223 (625)
Q Consensus       144 ~l~~~~~~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~~~~~~~d~~~va~~lK~fLr~Lp~pL  223 (625)
                      +.....+.||.++.+|+.+|+++|+++|||||++|+. +++++++.+++|. ...+++.+|+|++|++||+|||+||+||
T Consensus         6 ~~~~~~~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~-~~~~~~~~~~~~va~lLK~flreLp~pl   83 (184)
T d1pbwa_           6 EQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSS-NLAELRQLLDCDT-PSVDLEMIDVHVLADAFKRYLLDLPNPV   83 (184)
T ss_dssp             HHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSS-SCCCGGGBCHHHHHHHHHHHHHTSSSCS
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhCCCCCCeeeCCchH-HHHHHHHHHhcCC-CccCcccCCHHHHHHHHHHHHHhCCCcc
Confidence            3334445799999999999999999999999999985 6899999999974 3456788999999999999999999999


Q ss_pred             CChhhHHHHHHHhcC-c--hHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCC
Q psy10137        224 LTFEYYEEFLRAADL-T--EDRVSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRH  298 (625)
Q Consensus       224 l~~~~y~~~l~~~~~-~--~~~~~~l~~~l~--~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~  298 (625)
                      +|+++|+.|+.++.. .  +++++.++.++.  +||+.|+.+|.||+.||++|+.+++.|+||+.|||+||||+|+|++.
T Consensus        84 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~  163 (184)
T d1pbwa_          84 IPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSA  163 (184)
T ss_dssp             SCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSS
T ss_pred             ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHhHHHHHhcchhcCCCC
Confidence            999999999987643 2  277888999986  69999999999999999999999999999999999999999999854


Q ss_pred             CCchhhHHhhHHHHHHHHHHHHh
Q psy10137        299 FPAQDALSDISRQTLCIELIISE  321 (625)
Q Consensus       299 ~~~~~~~~~~~~~~~~ve~lI~~  321 (625)
                      .    +..++..++++|++||+|
T Consensus       164 ~----~~~~~~~~~~vve~LI~n  182 (184)
T d1pbwa_         164 A----SSDNTENLIKVIEILIST  182 (184)
T ss_dssp             C----CHHHHHHHHHHHHHHHHT
T ss_pred             C----ChhhHHHHHHHHHHHHhC
Confidence            2    345677788999999998

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.9e-35  Score=284.77  Aligned_cols=177  Identities=31%  Similarity=0.539  Sum_probs=157.1

Q ss_pred             CccceeeechhhhhhcccccccccccCCCHHHHHHHHHHHhcCCCCC----CCccCcChHHHHHHHHHHHHhCCCCCCCh
Q psy10137        151 KVPSLVDRLITTIELRGIYTEGIYRKSGIHSKIQELKTKIDEGKLPE----LELEVYSVHILANLLKLFLREMPEPLLTF  226 (625)
Q Consensus       151 ~vP~vl~~~i~~ie~~gl~~eGIfR~sg~~~~v~~L~~~~~~g~~~~----~~~~~~d~~~va~~lK~fLr~Lp~pLl~~  226 (625)
                      .+|.+|.+|+.+|+++|+.+|||||++|+..+++++++.++.|....    ....++|+|++|++||.|||+||+||+|+
T Consensus         6 ~~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~   85 (191)
T d1f7ca_           6 IGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMY   85 (191)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCH
T ss_pred             cccHHHHHHHHHHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHH
Confidence            45889999999999999999999999999999999999999875321    12346799999999999999999999999


Q ss_pred             hhHHHHHHHhcCch--HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhccCcCCCCccchhhhccccccccCCCCchhh
Q psy10137        227 EYYEEFLRAADLTE--DRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAPCILRQRHFPAQDA  304 (625)
Q Consensus       227 ~~y~~~l~~~~~~~--~~~~~l~~~l~~LP~~n~~~L~~L~~hL~~V~~~~~~NkMt~~nLaivf~P~Llr~~~~~~~~~  304 (625)
                      ++|+.|+.+.+..+  ++..+++.++.+||+.|+.+|.+|+.||++|+++++.|+||+.|||+||||+|++++.. ....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~-~~~~  164 (191)
T d1f7ca_          86 QFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEE-TVAA  164 (191)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC----CCSG
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchhcCCCCc-chHH
Confidence            99999999988665  78899999999999999999999999999999999999999999999999999998542 3455


Q ss_pred             HHhhHHHHHHHHHHHHhhHHHhhh
Q psy10137        305 LSDISRQTLCIELIISEQLKKLAD  328 (625)
Q Consensus       305 ~~~~~~~~~~ve~lI~~~~~if~d  328 (625)
                      +.++..+..++++||+|+.+||++
T Consensus       165 ~~~~~~~~~iv~~LI~~~~~iF~~  188 (191)
T d1f7ca_         165 IMDIKFQNIVIEILIENHEKIFNT  188 (191)
T ss_dssp             GGGHHHHHHHHHHHHHTHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Confidence            677888999999999999999975

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=6.4e-28  Score=231.71  Aligned_cols=136  Identities=29%  Similarity=0.470  Sum_probs=119.7

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCC---C-CcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPE---L-ELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--  446 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~---~-~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--  446 (625)
                      +|+.++|+||++|+..+++++++.++.|....   . ....+|+|++|++||.|||+||+||||.++|+.|..+.+..  
T Consensus        21 ~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~~~~~~~~~~~~~~~~  100 (191)
T d1f7ca_          21 RGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQ  100 (191)
T ss_dssp             HCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSH
T ss_pred             hCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhccCH
Confidence            58999999999999999999999999986432   1 12467999999999999999999999999999999998764  


Q ss_pred             hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCC
Q psy10137        447 EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGK  508 (625)
Q Consensus       447 ~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~  508 (625)
                      +++..+++.++.+||+.|+.+|.||+.||++|+.+++.|+||+.|||+||||+|++++.+..
T Consensus       101 ~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~  162 (191)
T d1f7ca_         101 ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETV  162 (191)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchhcCCCCcch
Confidence            47889999999999999999999999999999999999999999999999999999776553

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-28  Score=233.84  Aligned_cols=137  Identities=25%  Similarity=0.539  Sum_probs=123.5

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCC-CCCCCcC-CcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhccc--hH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGK-LPELELE-VYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADLT--ED  448 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~-~~~~~~~-~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~~--~~  448 (625)
                      +|+++||+||++|+.+++++|++.+|++. ..+++.. .+|+|++|++||+|||+||+||+|.++|+.|..+.+..  ++
T Consensus        32 ~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~  111 (196)
T d1xa6a1          32 RGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADE  111 (196)
T ss_dssp             SCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHH
T ss_pred             hCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccchhH
Confidence            58999999999999999999999999854 3344433 35899999999999999999999999999999998764  46


Q ss_pred             HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCCCC
Q psy10137        449 RVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEGKL  509 (625)
Q Consensus       449 ~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~~~  509 (625)
                      ++..++.++..||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+|++++.+...
T Consensus       112 ~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~f~P~l~~~~~~~~~  172 (196)
T d1xa6a1         112 RLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTL  172 (196)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHHHTTTSCCCCCSCTT
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHhccccccCCCccHH
Confidence            8899999999999999999999999999999999999999999999999999998776543

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.1e-28  Score=230.24  Aligned_cols=133  Identities=20%  Similarity=0.364  Sum_probs=119.6

Q ss_pred             ccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHHHHHHHhcc---chHH
Q psy10137        373 RQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYEEFLRAADL---TEDR  449 (625)
Q Consensus       373 ~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~~~~~~~~~---~~~~  449 (625)
                      +|++++||||++|+. +++++++.+++|.. ..+++.+|+|++|++||+|||+||+||||.++|+.|+.++..   .+++
T Consensus        28 ~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~-~~~~~~~~~~~va~lLK~flreLp~plip~~~~~~~~~~~~~~~~~~~~  105 (184)
T d1pbwa_          28 KGLECSTLYRTQSSS-NLAELRQLLDCDTP-SVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEY  105 (184)
T ss_dssp             HHTTCTTTTSSCCSC-CTTHHHHHSCSSSS-CCCGGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHH
T ss_pred             hCCCCCCeeeCCchH-HHHHHHHHHhcCCC-ccCcccCCHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHhccCCHHHH
Confidence            589999999999984 69999999999853 355678899999999999999999999999999999987653   3477


Q ss_pred             HHHHHHHHh--hCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccCCC
Q psy10137        450 VSTLFSILK--TLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKIDEG  507 (625)
Q Consensus       450 ~~~~~~li~--~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~~~  507 (625)
                      ++.++.++.  .||+.|+.+|.||+.||++|+.+++.|+||+.|||+||||+|||+++..
T Consensus       106 ~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~  165 (184)
T d1pbwa_         106 IQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAAS  165 (184)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHhHHHHHhcchhcCCCCCC
Confidence            888999986  6999999999999999999999999999999999999999999976553

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=228.92  Aligned_cols=146  Identities=27%  Similarity=0.425  Sum_probs=128.6

Q ss_pred             CCcchhhhhccccccccccCCCCCCCCcccchHHHHHHHhccCCCCCCCcCCcchhHHHHHHHHHHhcCCCCCCChhhHH
Q psy10137        358 IDDLDTARHSANTRIRQIRSSKPKPFPQIHSKIQELKTKIDEGKLPELELEVYSVHILANLLKLFLREMPEPLLTFEYYE  437 (625)
Q Consensus       358 i~~Lesa~~~~~~rl~~l~~~gifR~~G~~~~i~~L~~~l~~~~~~~~~~~~~d~~~va~lLK~flr~LpePLi~~~l~~  437 (625)
                      ++.+...+..+.. .+|+.++|+||.+|+.++++++++.+++|...++.. ..|+|+||++||.|||+||+||+|.++|+
T Consensus        24 vP~~l~~~~~~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~va~~lK~fLr~Lp~pLi~~~~~~  101 (196)
T d1tx4a_          24 IPIVLRETVAYLQ-AHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ-YNALHLPAVILKTFLRELPEPLLTFDLYP  101 (196)
T ss_dssp             SCHHHHHHHHHHH-HHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGG-SSCTHHHHHHHHHHHHHSSSCTTCGGGHH
T ss_pred             CChHHHHHHHHHH-HcCCCCCCeeecCCcHHHHHHHHHHHhCCCCccccc-cccHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            4444444444443 368999999999999999999999999998665542 33899999999999999999999999999


Q ss_pred             HHHHHhccc-hHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcccccCCcccccccccccccccccC
Q psy10137        438 EFLRAADLT-EDRVSTLFSILKTLPKPNFDLMERLIFHLARVAYHEEANRMTPNSLAIVFAQELKTKID  505 (625)
Q Consensus       438 ~~~~~~~~~-~~~~~~~~~li~~Lp~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~~faP~ll~~~~  505 (625)
                      .|..+.+.. ++++.+++.++.+||+.|+.+|.+|+.||++|+.|++.|+||+.|||+||||+|+++++
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~~f~P~l~~~~~  170 (196)
T d1tx4a_         102 HVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD  170 (196)
T ss_dssp             HHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSS
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhhcCCCC
Confidence            999988764 47889999999999999999999999999999999999999999999999999999764

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-12  Score=99.47  Aligned_cols=56  Identities=20%  Similarity=0.486  Sum_probs=52.6

Q ss_pred             CCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccccccc
Q psy10137         71 LGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLAR  126 (625)
Q Consensus        71 ~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~~  126 (625)
                      ++|.|...++..|++|++|+++|||..++|++|.+|++.||++|...++..|+++.
T Consensus         3 k~H~F~~~~~~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~~C~~~~   58 (62)
T d1xa6a3           3 KTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDL   58 (62)
T ss_dssp             CCCCCCEECCSSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSCSCCCTTT
T ss_pred             CCCEEEEeeCCCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhCCCcCCCCh
Confidence            58999999999999999999998888899999999999999999999999998653

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.24  E-value=1.6e-12  Score=100.80  Aligned_cols=58  Identities=24%  Similarity=0.516  Sum_probs=53.6

Q ss_pred             cccCCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccccc
Q psy10137         68 IVYLGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        68 ~~~~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      ...++|.|..+++..|++|++|+++|||..++|++|.+|++++|++|..+++..|+..
T Consensus         4 ~p~~~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~~C~~~   61 (66)
T d1tbna_           4 DPRNKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGVD   61 (66)
T ss_dssp             CCCCSCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSCCCSSCC
T ss_pred             CCCCCCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccccccCCCC
Confidence            3568999999999999999999999888888999999999999999999999999644

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=5.2e-12  Score=92.22  Aligned_cols=50  Identities=28%  Similarity=0.616  Sum_probs=47.5

Q ss_pred             CeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137         73 HELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC  122 (625)
Q Consensus        73 H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C  122 (625)
                      |.|..+++..|++|++|+++|||..+||++|++|++++|++|..+++..|
T Consensus         1 H~F~~~~~~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C   50 (50)
T d1ptqa_           1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC   50 (50)
T ss_dssp             CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred             CceEEecCCCCcCCcccCCcccCcccCcEECCCCCCeeChhHcccccCCC
Confidence            89999999999999999999888889999999999999999999998776

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.9e-11  Score=87.57  Aligned_cols=49  Identities=24%  Similarity=0.544  Sum_probs=45.9

Q ss_pred             CCCeeceeEeccCCccccccccccccccccccccccccccccccccccccccc
Q psy10137         71 LGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGECG  123 (625)
Q Consensus        71 ~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C~  123 (625)
                      .+|.|..++|..|++|++|++++|    +|++|++|++++|++|..+++..|.
T Consensus         2 ~~H~F~~~~f~~~~~C~~C~~~i~----~g~~C~~C~~~~H~~C~~~v~~~C~   50 (52)
T d1faqa_           2 TTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMCV   50 (52)
T ss_dssp             CCCCCEEECCSSCEECTTSSSEEC----SEEECTTTTCCBCSTTSSSSSSCCC
T ss_pred             CceEEEEeeCCCCcCCccCCCccc----cCCCcCCCCChhhhhhhcccccccc
Confidence            689999999999999999999864    6899999999999999999999886

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=5e-10  Score=80.49  Aligned_cols=46  Identities=26%  Similarity=0.667  Sum_probs=40.5

Q ss_pred             CCCeeceeEeccCCcccccccccccccccccccccccccccccccccccccc
Q psy10137         71 LGHELESKIINIPTACEICNSLFKWPIERMLVCQNCRHTCHRKCYTRIMGEC  122 (625)
Q Consensus        71 ~~H~F~~~~~~~pt~C~~C~~~i~~~~~qg~~C~~C~~~~HkkC~~~i~~~C  122 (625)
                      ..|.|..+++..|| |++|++++|    ||++|++|++.||++|..+++ +|
T Consensus         3 i~H~F~~~~~~~~t-C~~C~~~l~----qg~~C~~C~~~~Hk~C~~~~P-~C   48 (49)
T d1kbea_           3 VTHRFSTKSWLSQV-CNVCQKSMI----FGVKCKHCRLKCHNKCTKEAP-AC   48 (49)
T ss_dssp             CCCCEEEECCSSCC-CSSSCCSSC----CEEEETTTTEEESSSCTTTSC-CC
T ss_pred             CccEEeecCcCCCC-chhhchhhh----CcCCcCCCCChHhHhhcccCC-CC
Confidence            47999998887776 999999865    689999999999999999887 56

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.6e-09  Score=84.76  Aligned_cols=56  Identities=14%  Similarity=0.409  Sum_probs=50.4

Q ss_pred             cCCCeeceeEeccCCccccccccccccc-cccccccccccccccccccccccccccc
Q psy10137         70 YLGHELESKIINIPTACEICNSLFKWPI-ERMLVCQNCRHTCHRKCYTRIMGECGLA  125 (625)
Q Consensus        70 ~~~H~F~~~~~~~pt~C~~C~~~i~~~~-~qg~~C~~C~~~~HkkC~~~i~~~C~~~  125 (625)
                      ..+|.|...++..+++|++|++.+|+.. .||++|..|++.+|++|..+++..|+.+
T Consensus        25 ~~~H~w~~~n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~v~~~C~~P   81 (84)
T d1r79a_          25 AMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGP   81 (84)
T ss_dssp             CBCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSCBCCS
T ss_pred             CCCceEEeCCCCCCCCCcccCcccCCccccCcEecCcCCchhhhhhcCCCCCcCcCC
Confidence            3579999999999999999999987653 6899999999999999999999999744