Psyllid ID: psy10139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQDKNMLKR
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEccHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLQDRIIHLlavrpykkpelYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVwndvqddwpfysqqdKNMLKSRELLQNFsenhsitpfysqqdknmlkr
Flexible Loop (DISEMBL)
MLQDRIIHLlavrpykkpelyAALTrdgirdrdrNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFsenhsitpfysqqdknmlkr
Low Complexity Region (SEG)
MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQDKNMLKR
Disordered region (IsUnstruct)
****RIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYS************************************
Disordered Region (DISOPRED)
*LQDRIIHLLAVRPYKKPELYAA***************AILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKN*******************************
Disordered Region (DISEMBL)
MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQDKNMLKR
Disordered Region (DISPRO)
MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNF********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQQDKNMLKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q3UKU1	639	RNA polymerase II elongat	yes	N/A	0.915	0.151	0.432	8e-16
O00472	640	RNA polymerase II elongat	yes	N/A	0.716	0.118	0.461	3e-14
P55199	621	RNA polymerase II elongat	no	N/A	0.839	0.143	0.402	2e-12
O08856	602	RNA polymerase II elongat	no	N/A	0.858	0.151	0.361	2e-11

>sp|Q3UKU1|ELL2_MOUSE RNA polymerase II elongation factor ELL2 OS=Mus musculus GN=Ell2 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 7/104 (6%)

Query: 4   DRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWND 61
           DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A    +D +Y L+ +V+ +
Sbjct: 208 DRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFKE 267

Query: 62  VQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYSQQD 100
           +Q DWP YS+ D+  L    SR+L   QN S + S +P  S +D
Sbjct: 268 LQRDWPGYSETDRQTLDLVLSRKLNPSQNASTSRSESPLCSSKD 311

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.
Mus musculus (taxid: 10090)

>sp|O00472|ELL2_HUMAN RNA polymerase II elongation factor ELL2 OS=Homo sapiens GN=ELL2 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 4   DRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWND 61
           DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A   ++D +Y L+ +V+ +
Sbjct: 208 DRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFKE 267

Query: 62  VQDDWPFYSQQDKNMLKS 79
           +Q DWP YS+ D+  L+S
Sbjct: 268 LQRDWPGYSEIDRRSLES 285

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Homo sapiens (taxid: 9606)

>sp|P55199|ELL_HUMAN RNA polymerase II elongation factor ELL OS=Homo sapiens GN=ELL PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVW 59
            +DR++HLLA+RPY+K EL   L +DG+   D++ +  +L  +A   A+D T  LQ  ++
Sbjct: 207 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMY 266

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
            DVQ DWP YS+ D+ +LK R L++   +  S
Sbjct: 267 KDVQKDWPGYSEGDQQLLK-RVLVRKLCQPQS 297

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Homo sapiens (taxid: 9606)

>sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=Mus musculus GN=Ell PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 3/94 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVW 59
            +DR++HLLA+RPY+K EL   L +DG+   D++ + ++L  +A    +D T  LQ  ++
Sbjct: 204 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDTLDSLLQQVASVNPKDGTCTLQDCMY 263

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFSENHSIT 93
             +Q DWP YS+ D+ +LK R L++   +  + T
Sbjct: 264 KSLQKDWPGYSEGDRQLLK-RMLMRKLCQPQNAT 296


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,358,239
Number of Sequences: 539616
Number of extensions: 1373155
Number of successful extensions: 3194
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3181
Number of HSP's gapped (non-prelim): 10
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
383855598	754	PREDICTED: RNA polymerase II elongation	0.754	0.106	0.65	2e-26
328784149	752	PREDICTED: RNA polymerase II elongation	0.754	0.106	0.625	1e-25
307191477	541	RNA polymerase II elongation factor ELL	0.754	0.147	0.587	2e-25
345482824	620	PREDICTED: RNA polymerase II elongation	0.754	0.129	0.612	4e-25
193648109	517	PREDICTED: RNA polymerase II elongation	0.754	0.154	0.625	5e-25
380020092	751	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.754	0.106	0.625	5e-25
350402001	747	PREDICTED: RNA polymerase II elongation	0.754	0.107	0.625	7e-25
340714745	746	PREDICTED: RNA polymerase II elongation	0.754	0.107	0.625	1e-24
322797009	657	hypothetical protein SINV_03092 [Solenop	0.754	0.121	0.587	3e-24
332022815	528	RNA polymerase II elongation factor ELL	0.754	0.151	0.562	6e-24

>gi|383855598|ref|XP_003703297.1| PREDICTED: RNA polymerase II elongation factor ELL-like [Megachile rotundata]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 68/80 (85%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IHLLA+RPYKKPELY  + R+GI+DR+RN M  IL  +AF RDNTYHL R+VWND
Sbjct: 218 LKERLIHLLALRPYKKPELYDRINREGIKDRERNVMTTILKQVAFMRDNTYHLHRYVWND 277

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWP+Y++Q+K MLK R+
Sbjct: 278 VQEDWPYYTEQEKAMLKRRK 297

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784149|ref|XP_393419.3| PREDICTED: RNA polymerase II elongation factor ELL-like [Apis mellifera]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 68/80 (85%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IHLLA+RPYKKPELY  + R+G+++R+RN M  IL  +AF RDNTYHL R+VWND
Sbjct: 217 LKERLIHLLALRPYKKPELYDRINREGLKERERNIMTTILKQVAFMRDNTYHLHRYVWND 276

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWP+Y++Q+K MLK R+
Sbjct: 277 VQEDWPYYTEQEKAMLKRRK 296

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191477|gb|EFN75009.1| RNA polymerase II elongation factor ELL [Camponotus floridanus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 70/80 (87%)

Query: 2  LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
          L++R+IH+LA+RPYKKPELY  + ++G+R+++++ MM IL  +A+ RDNTYHLQRH+WND
Sbjct: 5  LKERLIHVLALRPYKKPELYDRINKEGLREKEKSIMMTILKQVAYMRDNTYHLQRHIWND 64

Query: 62 VQDDWPFYSQQDKNMLKSRE 81
          VQ+DWPFY++Q+K ML+ R+
Sbjct: 65 VQEDWPFYTEQEKTMLRRRK 84

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482824|ref|XP_003424673.1| PREDICTED: RNA polymerase II elongation factor ELL2-like [Nasonia vitripennis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 67/80 (83%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IHLLA+RP+K+PELY  +TR+GIR++++N +  +L  IAF RDNTYHL R VWND
Sbjct: 128 LKERLIHLLALRPFKRPELYDRITREGIREKEKNVIATVLKQIAFMRDNTYHLHRCVWND 187

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWPFY+ Q+K MLK R+
Sbjct: 188 VQEDWPFYTDQEKAMLKRRK 207

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193648109|ref|XP_001947940.1| PREDICTED: RNA polymerase II elongation factor ELL-like [Acyrthosiphon pisum]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 68/80 (85%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L+DRIIHLLA+RPYKKPEL + L RDG++D+DR Q+M++L+ +A A+DN Y+L RH+WN+
Sbjct: 220 LRDRIIHLLALRPYKKPELISILNRDGLKDKDRTQIMSVLSHVAQAKDNAYYLLRHIWNE 279

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWPFYS QD  +LK R+
Sbjct: 280 VQEDWPFYSSQDHIVLKRRK 299

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020092|ref|XP_003693930.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II elongation factor ELL2-like [Apis florea]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 68/80 (85%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IHLLA+RPYKKPELY  + R+G+++R+RN M  IL  +AF RDNTYHL R+VWND
Sbjct: 218 LKERLIHLLALRPYKKPELYDRINREGLKERERNIMTTILKQVAFMRDNTYHLHRYVWND 277

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWP+Y++Q+K MLK R+
Sbjct: 278 VQEDWPYYTEQEKAMLKRRK 297

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402001|ref|XP_003486332.1| PREDICTED: RNA polymerase II elongation factor ELL-like [Bombus impatiens]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 66/80 (82%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IHLLA+RPYKKPELY  + R+GI+DR+R  M  IL  +AF RDNTYHL R+VWND
Sbjct: 220 LKERLIHLLALRPYKKPELYDRINREGIKDRERTAMPMILKQVAFMRDNTYHLHRYVWND 279

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           V +DWP+Y++Q+K MLK R+
Sbjct: 280 VLEDWPYYTEQEKTMLKRRK 299

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714745|ref|XP_003395885.1| PREDICTED: RNA polymerase II elongation factor ELL2-like [Bombus terrestris]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 67/80 (83%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IHLLA+RPYKKPELY  + R+GI+DR+R+ M  IL  +AF RDNTYHL R+VWND
Sbjct: 220 LRERLIHLLALRPYKKPELYDRINREGIKDRERSAMPMILKQVAFMRDNTYHLHRYVWND 279

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           V +DWP+Y++Q+K MLK R+
Sbjct: 280 VLEDWPYYTEQEKAMLKRRK 299

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797009|gb|EFZ19323.1| hypothetical protein SINV_03092 [Solenopsis invicta]

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 67/80 (83%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IH+LA+RPYKKPELY  + ++G+RDR+R  M  IL  +A+ RDNTYHL RH+WND
Sbjct: 133 LKERLIHVLALRPYKKPELYDRINKEGLRDRERPVMTTILKQVAYMRDNTYHLNRHIWND 192

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWPFY++Q++ ML+ R+
Sbjct: 193 VQEDWPFYTEQERTMLRRRK 212

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022815|gb|EGI63088.1| RNA polymerase II elongation factor ELL [Acromyrmex echinatior]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 67/80 (83%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
           L++R+IH+LA+RPYKKPELY  + ++G+R+R+R  M  +L  +A+ RDNTYHL RH+WND
Sbjct: 114 LKERLIHVLALRPYKKPELYERIKKEGLRERERPVMQTLLKQVAYMRDNTYHLYRHIWND 173

Query: 62  VQDDWPFYSQQDKNMLKSRE 81
           VQ+DWPFY++Q++ ML+ R+
Sbjct: 174 VQEDWPFYTEQERTMLRRRK 193

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0014037	1060	Su(Tpl) "Su(Tpl)" [Drosophila	0.754	0.075	0.512	1.3e-18
UNIPROTKB|F1NBA3	577	ELL2 "Uncharacterized protein"	0.924	0.169	0.415	1.6e-15
MGI|MGI:2183438	639	Ell2 "elongation factor RNA po	0.924	0.153	0.428	3.2e-15
UNIPROTKB|F1LSH1	640	Ell2 "Protein Ell2" [Rattus no	0.924	0.153	0.419	1.4e-14
UNIPROTKB|O00472	640	ELL2 "RNA polymerase II elonga	0.924	0.153	0.415	4.9e-14
UNIPROTKB|F1RNV6	640	ELL2 "Uncharacterized protein"	0.924	0.153	0.415	7.9e-14
UNIPROTKB|E1BIK3	575	ELL2 "Uncharacterized protein"	0.924	0.170	0.405	8.5e-14
UNIPROTKB|Q5ZLS5	610	ELL "Uncharacterized protein"	0.896	0.155	0.377	1.2e-13
UNIPROTKB|E2QWD2	641	ELL2 "Uncharacterized protein"	0.839	0.138	0.427	1.3e-13
ZFIN|ZDB-GENE-030131-3946	660	ell "elongation factor RNA pol	0.867	0.139	0.378	2.3e-13

FB|FBgn0014037 Su(Tpl) "Su(Tpl)" [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 41/80 (51%), Positives = 62/80 (77%)

Query:     2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWND 61
             +++R+IHLLA++ +KKPEL+A L  +GIRDR+RNQ+  IL  I+    NTY+L+R +WND
Sbjct:   379 IRERLIHLLALKAFKKPELFARLKNEGIRDRERNQITNILMDISTMSHNTYNLRRQMWND 438

Query:    62 VQDDWPFYSQQDKNMLKSRE 81
             V ++WPF+S+Q+   LK R+
Sbjct:   439 VDENWPFFSEQEVQQLKRRK 458

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0005700 "polytene chromosome" evidence=IDA

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0042795 "snRNA transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|F1NBA3 ELL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/106 (41%), Positives = 69/106 (65%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L RDG+  +DRN + A+L  +A    +DN+Y L+ +++ 
Sbjct:   142 RDRVIHLLALKTYKKPELLARLQRDGVNLKDRNSLTAVLQQVANLNPKDNSYTLKDYLYK 201

Query:    61 DVQDDWPFYSQQDKNMLK---SRELLQN---FSENHSITPFYSQQD 100
             D+Q DWP Y++ DK  L+   SR++  +    S +H  +P  S +D
Sbjct:   202 DIQKDWPGYNEVDKQTLELILSRKVNSSQSTTSTSHLGSPVTSNKD 247

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

MGI|MGI:2183438 Ell2 "elongation factor RNA polymerase II 2" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 45/105 (42%), Positives = 68/105 (64%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A    +D +Y L+ +V+ 
Sbjct:   207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266

Query:    61 DVQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYSQQD 100
             ++Q DWP YS+ D+  L    SR+L   QN S + S +P  S +D
Sbjct:   267 ELQRDWPGYSETDRQTLDLVLSRKLNPSQNASTSRSESPLCSSKD 311

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

UNIPROTKB|F1LSH1 Ell2 "Protein Ell2" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A    +D +Y L+ +V+ 
Sbjct:   207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266

Query:    61 DVQDDWPFYSQQDKNMLK---SREL--LQNFSENHSITPFYSQQD 100
             ++Q DWP YS+ DK  L    SR+L   QN   +   +P  S +D
Sbjct:   267 ELQRDWPGYSETDKQTLDLVLSRKLNPSQNAGTSRPESPMCSSKD 311

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

UNIPROTKB|O00472 ELL2 "RNA polymerase II elongation factor ELL2" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 44/106 (41%), Positives = 70/106 (66%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A   ++D +Y L+ +V+ 
Sbjct:   207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFK 266

Query:    61 DVQDDWPFYSQQDKNMLKS---REL--LQNFS-ENHSITPFYSQQD 100
             ++Q DWP YS+ D+  L+S   R+L   QN +  + S +P  S +D
Sbjct:   267 ELQRDWPGYSEIDRRSLESVLSRKLNPSQNAAGTSRSESPVCSSRD 312

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RNV6 ELL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 44/106 (41%), Positives = 69/106 (65%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A    +D +Y L+ +V+ 
Sbjct:   207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266

Query:    61 DVQDDWPFYSQQDKNMLKS---REL--LQNF-SENHSITPFYSQQD 100
             ++Q DWP Y++ D+  L+S   R+L   QN  S + S +P  S +D
Sbjct:   267 ELQRDWPGYNEIDRRSLESVLSRKLNSSQNAASTSRSESPVCSSRD 312

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|E1BIK3 ELL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 8.5e-14, P = 8.5e-14
 Identities = 43/106 (40%), Positives = 69/106 (65%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L +DG+  +D+N + A+L  +A    +D +Y L+ +V+ 
Sbjct:   142 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAVLQQVANLNPKDLSYTLKDYVFK 201

Query:    61 DVQDDWPFYSQQDKNMLKS---REL--LQNF-SENHSITPFYSQQD 100
             ++Q DWP Y++ D+  L+S   R+L   QN  S + S +P  S +D
Sbjct:   202 ELQRDWPGYNEIDRRSLESVLSRKLNPSQNAASTSRSESPVCSSRD 247

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q5ZLS5 ELL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 37/98 (37%), Positives = 65/98 (66%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWN 60
             +DR++HLLA++PYKKPEL   L +DG+  +D++ +  +L  +A   A+D+T+ L+  V+ 
Sbjct:   201 KDRVVHLLALKPYKKPELILRLQKDGLSQQDKDLLDNLLQQVANLSAKDSTFTLKDCVYK 260

Query:    61 DVQDDWPFYSQQDKNMLKSRELLQNFSENHSITPFYSQ 98
             +VQ DWP YS+ D+ +LK R L++   +  + + F  +
Sbjct:   261 EVQKDWPGYSEGDQQLLK-RILVRKLCQPQNSSGFQGE 297

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

UNIPROTKB|E2QWD2 ELL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 41/96 (42%), Positives = 65/96 (67%)

Query:     3 QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWN 60
             +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A    +D +Y L+ +V+ 
Sbjct:   207 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFK 266

Query:    61 DVQDDWPFYSQQDKNMLKS---RELLQNFSENHSIT 93
             ++Q DWP Y++ D+  L+S   R+L  N S+N + T
Sbjct:   267 ELQRDWPGYNELDRRSLESVLSRKL--NPSQNAAST 300

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

ZFIN|ZDB-GENE-030131-3946 ell "elongation factor RNA polymerase II" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 36/95 (37%), Positives = 65/95 (68%)

Query:     2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVW 59
             L++R++HLLA++PY+KPEL   LT+DG+  +D+  + ++L  +A   ++DNT+ L+  ++
Sbjct:   223 LRERLVHLLALKPYRKPELLVRLTKDGLSFQDKETLDSLLQQVANLNSKDNTFTLKDCLF 282

Query:    60 NDVQDDWPFYSQQDKNMLKSRELLQNFSENHSITP 94
              +VQ DWP Y++ D+ +LK R L++   +  S  P
Sbjct:   283 KEVQKDWPGYTEVDQQILK-RILVRKLCKPQSNAP 316

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
pfam10390	285	pfam10390, ELL, RNA polymerase II elongation facto	8e-29

>gnl|CDD|220728 pfam10390, ELL, RNA polymerase II elongation factor ELL

 Score =  104 bits (261), Expect = 8e-29
 Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 3/88 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFAR--DNTYHLQRHVW 59
           L++R+IHLLA++PYKKPEL   L +DG+ D+D+N + ++L  +A     DN+Y L+  V+
Sbjct: 199 LRERVIHLLALKPYKKPELLLRLQKDGLADKDKNSLDSLLQQVANLNPKDNSYTLKDCVY 258

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFS 87
            +VQ+DWP YS+ ++ ++K R L +  S
Sbjct: 259 KEVQEDWPGYSEDERQLVKRR-LERKLS 285

ELL is a family of RNA polymerase II elongation factors. It is bound stably to elongation-associated factors 1 and 2, EAFs, and together these act as a strong regulator of transcription activity. by direct interaction with Pol II. ELL binds to pol II on its own but the affinity is greatly increased by the cooperation of EAF. Some members carry an Occludin domain pfam07303 just downstream. There is no S. cerevisiae member. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF10390	284	ELL: RNA polymerase II elongation factor ELL ; Int	100.0
KOG4796|consensus	604		99.96
KOG1140|consensus	1738		98.79
PRK00117	157	recX recombination regulator RecX; Reviewed	87.17
PRK14136	309	recX recombination regulator RecX; Provisional	86.67
PRK14137	195	recX recombination regulator RecX; Provisional	84.04

>PF10390 ELL: RNA polymerase II elongation factor ELL ; InterPro: IPR019464 ELL is a family of RNA polymerase II elongation factors

Probab=100.00  E-value=1.2e-34  Score=230.45  Aligned_cols=84  Identities=43%  Similarity=0.865  Sum_probs=71.1

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhccC-CCeEEechhhhhhccCCCCCCCHHHHHHHHHH
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFAR-DNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSR   80 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~~-~~~Y~Lk~~~~~evq~dWp~Yse~er~~~krr   80 (106)
                      ||+|||||||||||+++||++||++||++++|++.|++||++||++. +|+|+||++||+|||.||||||++|||+++|+
T Consensus       199 lReRvIHLLALkpykK~ELl~rL~~dg~~~~dk~~l~~iL~~Va~l~~~~~y~Lk~~~ykevq~dWP~yse~erq~l~r~  278 (284)
T PF10390_consen  199 LRERVIHLLALKPYKKPELLLRLQKDGLSPKDKDELDSILQEVANLNKDNSYTLKDHFYKEVQKDWPGYSEEERQLLKRR  278 (284)
T ss_dssp             HHHHHHHHHHHS-EEHHHHHHHHHHH---HHHHHHHHHHHHHCCEEETTTEEEE-STHHHHS-TT-TT--TCHHHHHHHH
T ss_pred             ccccchhhhhcCccccHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcCCeEEehHHHHhhhccCCCCCCHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999995 99999999999999999999999999999997


Q ss_pred             Hhhhhc
Q psy10139         81 ELLQNF   86 (106)
Q Consensus        81 k~~q~~   86 (106)
                      + ++++
T Consensus       279 l-~~~l  283 (284)
T PF10390_consen  279 L-SRKL  283 (284)
T ss_dssp             H-HHHS
T ss_pred             H-Hhhc
Confidence            7 5444

It is bound stably to elongation-associated factors 1 and 2, EAFs, and together these act as a strong regulator of transcription activity. by direct interaction with Pol II. ELL binds to pol II on its own but the affinity is greatly increased by the cooperation of EAF []. Some members carry an occludin domain (IPR010844 from INTERPRO) just downstream. There is no Saccharomyces cerevisiae (Baker's yeast) member. ; GO: 0006368 transcription elongation from RNA polymerase II promoter, 0008023 transcription elongation factor complex; PDB: 2E5N_A 2DOA_A.

>KOG4796|consensus

Probab=99.96  E-value=2e-29  Score=215.92  Aligned_cols=97  Identities=36%  Similarity=0.642  Sum_probs=90.4

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhccCCCeEEechhhhhhccCCCCCCCHHHHHHHHHHH
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFARDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKSRE   81 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~krrk   81 (106)
                      ||+||||||||++|+++||++||++||+.++|++.|++||++..+.++|+|+|++++|+||+.+||||||+|+|+++|++
T Consensus       212 ir~RviHLlalk~ykk~El~~rLk~dGl~~~e~~~i~~il~~~~~~~~~t~~Lrd~~~~evdq~Wp~yse~d~~~lkr~~  291 (604)
T KOG4796|consen  212 IRDRVIHLLALKAYKKPELLARLKKDGLPQEEKNKIRSILQQNSRSKDGTYTLRDSMLKEVDQNWPGYSEGDKQHLKRVL  291 (604)
T ss_pred             hHHHHHHHHHhhhcccHHHHHHHhhcCCcHHHHHHHHHHHHhhcccccccchHHHHhhhHHHhcCCCcchHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999977789999999999999999999999999999999877


Q ss_pred             hhhhcCCCCCCCCCCchh
Q psy10139         82 LLQNFSENHSITPFYSQQ   99 (106)
Q Consensus        82 ~~q~~~pP~s~p~~~~~~   99 (106)
                       .++++||++.-.|.+-.
T Consensus       292 -~~~l~~~~s~~n~~~~~  308 (604)
T KOG4796|consen  292 -NRKLRPPQSDNNFAGTS  308 (604)
T ss_pred             -hccCCCCCCCccccCcc
Confidence             78899998776665543

>KOG1140|consensus

Probab=98.79  E-value=4.2e-09  Score=100.10  Aligned_cols=95  Identities=14%  Similarity=0.222  Sum_probs=80.1

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc-------CCCeEEechhhhhhccCCCCCCCHHHH
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA-------RDNTYHLQRHVWNDVQDDWPFYSQQDK   74 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~-------~~~~Y~Lk~~~~~evq~dWp~Yse~er   74 (106)
                      +|.+|||+||.+|.+.+.|+..++.|-.   +..+++.++++||.|       ..|+|.||+++|++|+.++.|||..+|
T Consensus       781 ~k~~iIh~L~~~~lays~lv~s~~~dl~---~~l~~d~~~e~Va~~~~p~~~~~~gvf~lK~~~~~~~dpy~~~~s~s~q  857 (1738)
T KOG1140|consen  781 IKSEIIHILCFKPLSYSQLVRKIPHDLT---KTLSFDEALEEVAVFKKPKGLADNGVFVLKESYYDEVDPYYKHLSKSEQ  857 (1738)
T ss_pred             HHHHHHHHHHhcchhHHHHHHhchhhhh---hcccchHHHHHHHhhccCCccccceEEEechhhhhhcCchhhhhhHhHH
Confidence            6889999999999999999999999987   358999999999997       569999999999999999999999999


Q ss_pred             HHHHH------HHh-hhh-cCCCCCCCCCCchh
Q psy10139         75 NMLKS------REL-LQN-FSENHSITPFYSQQ   99 (106)
Q Consensus        75 ~~~kr------rk~-~q~-~~pP~s~p~~~~~~   99 (106)
                      ....+      .+. .+. |++|+.+|.|++.-
T Consensus       858 ~~se~~~~k~~~~~~k~~~A~~~~i~~~~~~ll  890 (1738)
T KOG1140|consen  858 SESEATIRKSRLAKKKDVIALVPPILPKFIKLL  890 (1738)
T ss_pred             hhhhHHHHHHHHHHhhccccccCCCcHHHHHHH
Confidence            84332      221 233 67777788887765

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=87.17  E-value=1.4  Score=31.63  Aligned_cols=42  Identities=26%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF   46 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~   46 (106)
                      .+...+++|+-++++..||..+|.+-|..+   +.++.+|+....
T Consensus        13 a~~~al~~L~~r~~s~~el~~kL~~kg~~~---~~i~~vl~~l~~   54 (157)
T PRK00117         13 ARARALRLLARREHSRAELRRKLAAKGFSE---EVIEAVLDRLKE   54 (157)
T ss_pred             HHHHHHHHHccchhHHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Confidence            356889999999999999999999999986   577777766543

>PRK14136 recX recombination regulator RecX; Provisional

Probab=86.67  E-value=1.4  Score=36.57  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF   46 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~   46 (106)
                      ++.+.+++|+-+.++..||..+|.+-|..+   +.++.||+.+-.
T Consensus       164 lk~kAL~lLSrReRSe~ELr~KL~kkG~~e---e~IE~VIerLke  205 (309)
T PRK14136        164 LKGRALGYLSRREYSRAELARKLAPYADES---DSVEPLLDALER  205 (309)
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHcCCCH---HHHHHHHHHHHH
Confidence            578899999999999999999999999976   577888776654

>PRK14137 recX recombination regulator RecX; Provisional

Probab=84.04  E-value=2.1  Score=32.85  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF   46 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~   46 (106)
                      ++...+++|+-+.++..||..+|.+.|..+   ..++.||+..-.
T Consensus        42 ~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~---e~Ie~vI~rL~e   83 (195)
T PRK14137         42 LLAYAFRALAARAMTAAELRAKLERRSEDE---ALVTEVLERVQE   83 (195)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Confidence            456789999999999999999999999976   677777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
2e5n_A	100	Solution Structure Of The Ell_n2 Domain Of Target O		4e-15
2doa_A	104	Solution Structure Of The Helical Domain In Human E		2e-14

>pdb|2E5N|A Chain A, Solution Structure Of The Ell_n2 Domain Of Target Of Rna Polymerase Ii Elongation Factor Ell2 Length = 100

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
Query: 3  QDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWN 60
          +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A   ++D +Y L+ +V+ 
Sbjct: 15 RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFK 74
Query: 61 DVQDDWPFYSQQDKNMLKS 79
          ++Q DWP YS+ D+  L+S
Sbjct: 75 ELQRDWPGYSEIDRRSLES 93

>pdb|2DOA|A Chain A, Solution Structure Of The Helical Domain In Human Eleven- Nineteen Lysine-Rich Leukemia Protein Ell Length = 104

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 4   DRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA--FARDNTYHLQRHVWND 61
           DR++HLLA+RPY+K EL   L +DG+   D++ +  +L  +A   A+D T  LQ  ++ D
Sbjct: 15  DRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYKD 74
Query: 62  VQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
           VQ DWP YS+ D+ +LK R L++  S   S
Sbjct: 75  VQKDWPGYSEGDQQLLK-RVLVRKLSGPSS 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2e5n_A	100	RNA polymerase II elongation factor ELL2; ELL_N2 d	5e-31
2doa_A	104	RNA polymerase II elongation factor ELL; C19ORF17,	8e-31

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score =  104 bits (261), Expect = 5e-31
 Identities = 36/81 (44%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 2  LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVW 59
           +DR+IHLLA++ YKKPEL A L +DG+  +D+N + AIL  +A   ++D +Y L+ +V+
Sbjct: 14 YRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVF 73

Query: 60 NDVQDDWPFYSQQDKNMLKSR 80
           ++Q DWP YS+ D+  L+S 
Sbjct: 74 KELQRDWPGYSEIDRRSLESV 94

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81 Length = 104

 Score =  104 bits (260), Expect = 8e-31
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 2   LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHVW 59
            +DR++HLLA+RPY+K EL   L +DG+   D++ +  +L  +A   A+D T  LQ  ++
Sbjct: 13  FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMY 72

Query: 60  NDVQDDWPFYSQQDKNMLKSRELLQNFSENHS 91
            DVQ DWP YS+ D+ +LK R L++  S   S
Sbjct: 73  KDVQKDWPGYSEGDQQLLK-RVLVRKLSGPSS 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2doa_A	104	RNA polymerase II elongation factor ELL; C19ORF17,	100.0
2e5n_A	100	RNA polymerase II elongation factor ELL2; ELL_N2 d	100.0
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	90.04
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	87.71
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	84.63
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	84.0

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81

Probab=100.00  E-value=1.8e-41  Score=237.98  Aligned_cols=89  Identities=39%  Similarity=0.722  Sum_probs=86.0

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc--CCCeEEechhhhhhccCCCCCCCHHHHHHHHH
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKS   79 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~--~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~kr   79 (106)
                      +|+||||||||+||++|||++||++||++++|+++|++||+|||++  ++|+|+|+++||+|||.||||||++||++++|
T Consensus        13 lReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~~~~y~Lk~~~y~eVq~dWp~Yte~erq~v~r   92 (104)
T 2doa_A           13 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKR   92 (104)
T ss_dssp             HHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSSSCEEECCSSGGGGCCSCCTTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCeeeehHHHHHHhcCCCCCCCHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999  79999999999999999999999999999988


Q ss_pred             HHhhhhcCCCCC
Q psy10139         80 RELLQNFSENHS   91 (106)
Q Consensus        80 rk~~q~~~pP~s   91 (106)
                      ++ +++++||+|
T Consensus        93 ~l-~~~l~~p~s  103 (104)
T 2doa_A           93 VL-VRKLSGPSS  103 (104)
T ss_dssp             HH-HHHSSCSSC
T ss_pred             HH-HHhcCCCCC
Confidence            77 888999875

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=225.47  Aligned_cols=79  Identities=46%  Similarity=0.807  Sum_probs=77.0

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc--CCCeEEechhhhhhccCCCCCCCHHHHHHHHH
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWNDVQDDWPFYSQQDKNMLKS   79 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~--~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~kr   79 (106)
                      +|+||||||||+||++|||++||++||++++|++.|++||+|||++  ++|+|+||++||+|||.||||||++|||+++|
T Consensus        14 lReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~~~~y~Lk~~~~~eVq~dWp~Yte~erq~v~r   93 (100)
T 2e5n_A           14 YRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLES   93 (100)
T ss_dssp             HHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETTTTEEEECSTHHHHSCTTCTTCCTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCcCCeeehhHHHHHHhccCCCCCCHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999  68999999999999999999999999999987


Q ss_pred             H
Q psy10139         80 R   80 (106)
Q Consensus        80 r   80 (106)
                      +
T Consensus        94 ~   94 (100)
T 2e5n_A           94 V   94 (100)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=90.04  E-value=0.59  Score=33.13  Aligned_cols=41  Identities=29%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA   45 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA   45 (106)
                      .+...+++|+-++++..||..+|.+-|..+   +.++.||+...
T Consensus        19 a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~---e~Ie~vl~~l~   59 (162)
T 3dfg_A           19 PVQRALGLLVHREHSKKELNRKLQARGIEP---EAAQAAVERLA   59 (162)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHTTCCH---HHHHHHHHHHH
T ss_pred             HHHHHHHHhhchhhhHHHHHHHHHhcCCCH---HHHHHHHHHHH
Confidence            467899999999999999999999999976   57777777663

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=87.71  E-value=1  Score=33.34  Aligned_cols=41  Identities=12%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhh
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIA   45 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA   45 (106)
                      .+.+.+++|+-++++..||..+|.+-|..+   +.++.||+...
T Consensus        63 a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~---e~i~~vl~~L~  103 (221)
T 3d5l_A           63 AYSRMLDYLSYQMRTESDIVKKLKEIDTPE---EFVEPILKKLR  103 (221)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHTTCCH---HHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccHHHHHHHHHhcCCCH---HHHHHHHHHHH
Confidence            467889999999999999999999999876   57777776554

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}

Probab=84.63  E-value=1.6  Score=30.55  Aligned_cols=41  Identities=27%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhc-----C-----CChHhHhHHHHHHHHhh
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRD-----G-----IRDRDRNQMMAILNGIA   45 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kd-----g-----~~~~dk~~l~~iL~eVA   45 (106)
                      .+.+.+++|+-++++..||..+|.+-     |     ..+   +.++.||+...
T Consensus         7 a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~---~~i~~vl~~l~   57 (159)
T 3c1d_A            7 LLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATA---EDYERVIAWCH   57 (159)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCH---HHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCH---HHHHHHHHHHH
Confidence            46789999999999999999999984     6     655   57777776554

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=84.00  E-value=0.98  Score=32.47  Aligned_cols=42  Identities=14%  Similarity=0.160  Sum_probs=35.4

Q ss_pred             hhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhc
Q psy10139          2 LQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF   46 (106)
Q Consensus         2 lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~   46 (106)
                      .+.+.+++|+-++++..||..+|.+-|..+   +.++.||+....
T Consensus        20 a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~---~~ie~vl~~L~~   61 (177)
T 3e3v_A           20 GYNAALNYLSYQLRTRKEVEDKLRSLDIHE---DYISEIINKLID   61 (177)
T ss_dssp             HHHHHHHHHHSSCCCHHHHHTTSGGGTCCH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHcCCCH---HHHHHHHHHHHH
Confidence            357889999999999999999999999976   577778766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d2doaa1	91	a.4.5.81 (A:8-98) RNA polymerase II elongation fac	3e-22

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (200), Expect = 3e-22
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 1  MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAF--ARDNTYHLQRHV 58
            +DR++HLLA+RPY+K EL   L +DG+   D++ +  +L  +A   A+D T  LQ  +
Sbjct: 5  PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCM 64

Query: 59 WNDVQDDWPFYSQQDKNMLKSR 80
          + DVQ DWP YS+ D+ +LK  
Sbjct: 65 YKDVQKDWPGYSEGDQQLLKRV 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d2doaa1	91	RNA polymerase II elongation factor ELL {Human (Ho	100.0
d2bbya_	69	DNA-binding domain from rap30 {Human (Homo sapiens	80.63

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-34  Score=192.34  Aligned_cols=79  Identities=42%  Similarity=0.787  Sum_probs=76.2

Q ss_pred             ChhHHHHHHHhcCCCCcHHHHHHHHhcCCChHhHhHHHHHHHHhhcc--CCCeEEechhhhhhccCCCCCCCHHHHHHHH
Q psy10139          1 MLQDRIIHLLAVRPYKKPELYAALTRDGIRDRDRNQMMAILNGIAFA--RDNTYHLQRHVWNDVQDDWPFYSQQDKNMLK   78 (106)
Q Consensus         1 ~lr~RIIHLLAlkPy~k~EL~~rL~kdg~~~~dk~~l~~iL~eVA~~--~~~~Y~Lk~~~~~evq~dWp~Yse~er~~~k   78 (106)
                      .||+||||+||++||++|||+++|++||.++.|.+.|+.||++||+|  .+|+|+||+++|+|||.||||||++||+.++
T Consensus         5 ~lR~~iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~~g~Y~LK~~~~~Evdp~~~~Ys~~drq~~~   84 (91)
T d2doaa1           5 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLK   84 (91)
T ss_dssp             CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSSSCEEECCSSGGGGCCSCCTTCCSHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHhcccccchHHHHHHHHHHHheecCCCceEeeHHHHHhHcCccCCCCCHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999  6799999999999999999999999999887


Q ss_pred             H
Q psy10139         79 S   79 (106)
Q Consensus        79 r   79 (106)
                      |
T Consensus        85 ~   85 (91)
T d2doaa1          85 R   85 (91)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding domain from rap30
domain: DNA-binding domain from rap30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=0.65  Score=28.32  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             HhHHHHHHHHhhcc-----CCCeEEechhh
Q psy10139         34 RNQMMAILNGIAFA-----RDNTYHLQRHV   58 (106)
Q Consensus        34 k~~l~~iL~eVA~~-----~~~~Y~Lk~~~   58 (106)
                      ..-|-.||++||.+     ..|.|+||+++
T Consensus        36 ~~yLKeiL~eIa~~~~~g~~~~~weLKpEY   65 (69)
T d2bbya_          36 VVYLKEILKEIGVQNVKGIHKNTWELKPEY   65 (69)
T ss_dssp             HHHHHHHHHHHCCEECCTTCCCEECCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceeCCHHH
Confidence            47899999999998     24899999874