Psyllid ID: psy1013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSKPRKRLGI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHHcccccccccHHccccccHHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEcHHHHHHHHcccccccEEEEEEEEcccHHHHHccEEcccEEcccHHHHHHHHHccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHHEEccccccccHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHccccHHHEEccccccccccHHHHHHHHHHHHHHcccccccccccccccHcccc
Coil and Loop (DISEMBL)
MKILADLDLNLigdfskqfilplvpdgkhhdlknispDTLARLIRGEFNDVVDKYLIIdcrypyeykgghiqGALNIYTREHLVKEFIESKvhaqsnatcdkrrVLIFHCeysaergptlsrylrsedrahnayptldypemyllnggykQFYAQHQDlceggylpmadpgyksrylrsedrahnayptldypemyllnggykQFYAQHQDlceggylpmadpgyksdfqtfrsksktwscdykankslskprkrlgi
Flexible Loop (DISEMBL)
MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIEskvhaqsnatcdkrRVLIFHCeysaergptlsrYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRsksktwscdykankslskprkrlgi
Low Complexity Region (SEG)
MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSKPRKRLGI
Disordered region (IsUnstruct)
**ILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTF******WSC*****************
Disordered Region (DISOPRED)
***********IGDFSKQFILPLVPDG**HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE***********DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYL******************************************************************************L**
Disordered Region (DISEMBL)
MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANK***********
Disordered Region (DISPRO)
*******DLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCD****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSKPRKRLGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
P20483	479	M-phase inducer phosphata	yes	N/A	0.678	0.365	0.518	4e-47
A5D7P0	477	M-phase inducer phosphata	yes	N/A	0.655	0.354	0.5	1e-44
P30305	580	M-phase inducer phosphata	no	N/A	0.620	0.275	0.509	4e-44
P30309	550	M-phase inducer phosphata	N/A	N/A	0.635	0.298	0.497	1e-43
Q29029	502	M-phase inducer phosphata	yes	N/A	0.655	0.336	0.494	2e-43
P30307	473	M-phase inducer phosphata	no	N/A	0.655	0.357	0.482	2e-43
P30306	576	M-phase inducer phosphata	yes	N/A	0.616	0.276	0.493	3e-43
P48966	574	M-phase inducer phosphata	no	N/A	0.616	0.277	0.512	3e-43
P30308	550	M-phase inducer phosphata	N/A	N/A	0.635	0.298	0.491	6e-43
P30310	599	M-phase inducer phosphata	N/A	N/A	0.635	0.273	0.491	6e-43

>sp|P20483|MPIP_DROME M-phase inducer phosphatase OS=Drosophila melanogaster GN=stg PE=1 SV=2

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 135/185 (72%), Gaps = 10/185 (5%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LPL+ +G+H DLK+IS +T+ARL++GEF+D V  Y IIDCRYPYE++GGH
Sbjct: 277 LIGDFSKAYALPLM-EGRHRDLKSISSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGH 335

Query: 71  IQGALNIYTREHLVKEFI---ESKVHAQSNA-TCDKRRVLIFHCEYSAERGPTLSRYLRS 126
           I+GA N+YT E ++ EF+   ++++  Q NA +  KR ++IFHCE+S+ERGP +SR+LR+
Sbjct: 336 IEGAKNLYTTEQILDEFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRN 395

Query: 127 EDRAH--NAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS--RYLRSED 181
            DR    NAYP L YPE+YLL+ GYK+F+  H +LCE   Y  M DP Y    R+ R++ 
Sbjct: 396 LDRERNTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRHFRAKS 455

Query: 182 RAHNA 186
           ++ N 
Sbjct: 456 KSWNG 460

This protein functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It may directly dephosphorylate p34(cdc2) and activate the p34(cdc2) kinase activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|A5D7P0|MPIP3_BOVIN M-phase inducer phosphatase 3 OS=Bos taurus GN=CDC25C PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 120/174 (68%), Gaps = 5/174 (2%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK   LP V  GKH DLK ++P+T+A L+ GEF  +++K+ IIDCRYPYEY GGH
Sbjct: 286 LIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGEFQGLIEKFYIIDCRYPYEYLGGH 344

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           IQGALN++++E L   F++  +    N    KR V++FHCE+S+ERGP + R LR EDR 
Sbjct: 345 IQGALNLHSQEELYNFFLKKPIVPWDN---QKRIVIVFHCEFSSERGPRMCRSLREEDRT 401

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLRSEDRA 183
            N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR  +++
Sbjct: 402 LNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKAELLRCRNQS 455

Functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It directly dephosphorylates CDK1 and activate its kinase activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P30305|MPIP2_HUMAN M-phase inducer phosphatase 2 OS=Homo sapiens GN=CDC25B PE=1 SV=2

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 5/165 (3%)

Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
            LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 391 ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 449

Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
           HI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R++R  DR
Sbjct: 450 HIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDR 506

Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           A N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 507 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 551

Tyrosine protein phosphatase which functions as a dosage-dependent inducer of mitotic progression. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Directly dephosphorylates CDK1 and stimulates its kinase activity. The three isoforms seem to have a different level of activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P30309|MPI1B_XENLA M-phase inducer phosphatase 1-B OS=Xenopus laevis GN=cdc25-1-b PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 119/169 (70%), Gaps = 5/169 (2%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDF+K + LP V  G+H DL+ I+ +TLA LI G+F+ +V+K  IIDCRYPYEY GGH
Sbjct: 362 LIGDFTKVYALPTV-TGRHQDLRYITGETLAALIHGDFSSLVEKIFIIDCRYPYEYDGGH 420

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+GALN++ +E +   F++  +   +     KR ++IFHCE+S+ERGP + R+LR EDRA
Sbjct: 421 IKGALNLHRQEEVTDYFLKQPL---TPTMAQKRLIIIFHCEFSSERGPKMCRFLREEDRA 477

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLR 178
            N YP+L YPE+YLL GGYK F+ ++++LCE   Y PM    ++   L+
Sbjct: 478 RNEYPSLYYPELYLLKGGYKDFFPEYKELCEPQSYCPMHHQDFREELLK 526

This protein functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It may directly dephosphorylate p34(cdc2) and activate the p34(cdc2) kinase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q29029|MPIP3_PIG M-phase inducer phosphatase 3 OS=Sus scrofa GN=CDC25C PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 122/176 (69%), Gaps = 7/176 (3%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK   LP V  G+H DLK ++P+T+A L+ G+F  +++K+ IIDCRYPYEY GGH
Sbjct: 311 LIGDFSKVCALPTV-SGRHQDLKYVNPETVAALLSGKFQGLIEKFYIIDCRYPYEYLGGH 369

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           IQGALN+Y++E L   F++  +         KR +++FHCE+S+ERGP + R LR EDRA
Sbjct: 370 IQGALNLYSQEELCNFFLKKPIIPLDT---QKRIIVVFHCEFSSERGPRMCRSLREEDRA 426

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYL--RSEDRA 183
            N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  L  RS+++A
Sbjct: 427 LNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKAELLRCRSQNKA 482

Functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It directly dephosphorylates CDK1 and activate its kinase activity.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P30307|MPIP3_HUMAN M-phase inducer phosphatase 3 OS=Homo sapiens GN=CDC25C PE=1 SV=2

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 119/174 (68%), Gaps = 5/174 (2%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK   LP V  GKH DLK ++P+T+A L+ G+F  +++K+ +IDCRYPYEY GGH
Sbjct: 282 LIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGH 340

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           IQGALN+Y++E L   F++  +         KR +++FHCE+S+ERGP + R LR EDR+
Sbjct: 341 IQGALNLYSQEELFNFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRCLREEDRS 397

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLRSEDRA 183
            N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR   ++
Sbjct: 398 LNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKTELLRCRSQS 451

Functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It directly dephosphorylates CDK1 and activate its kinase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P30306|MPIP2_MOUSE M-phase inducer phosphatase 2 OS=Mus musculus GN=Cdc25b PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 115/164 (70%), Gaps = 5/164 (3%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++V+K++I+DCRYPYEY+GGH
Sbjct: 388 LIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVEKFVIVDCRYPYEYEGGH 446

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+ A+N+          ++  +      + DKR +LIFHCE+S+ERGP + R++R  DRA
Sbjct: 447 IKNAVNLPLERDAETFLLQRPIMP---CSLDKRIILIFHCEFSSERGPRMCRFIRERDRA 503

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
            N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    ++
Sbjct: 504 ANDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFR 547

Tyrosine protein phosphatase which functions as a dosage-dependent inducer of mitotic progression. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Directly dephosphorylates CDK1 and stimulates its kinase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P48966|MPIP2_RAT M-phase inducer phosphatase 2 OS=Rattus norvegicus GN=Cdc25b PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 117/164 (71%), Gaps = 5/164 (3%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++V+K++I+DCRYPYEY+GGH
Sbjct: 386 LIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVEKFVIVDCRYPYEYEGGH 444

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+ A+N+   E   + F+    H  +    DKR +LIFHCE+S+ERGP + R++R  DRA
Sbjct: 445 IKNAVNLPL-EPDAETFLLK--HPITPCNLDKRIILIFHCEFSSERGPRMCRFIRERDRA 501

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
            N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    ++
Sbjct: 502 ANDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHAAFR 545

Tyrosine protein phosphatase which functions as a dosage-dependent inducer of mitotic progression. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Directly dephosphorylates CDK1 and stimulates its kinase activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P30308|MPI1A_XENLA M-phase inducer phosphatase 1-A OS=Xenopus laevis GN=cdc25-1-a PE=2 SV=1

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 118/169 (69%), Gaps = 5/169 (2%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LP V  G+H DL+ I+ +TLA L+ G+FN +V+K+ IIDCRYPYEY GGH
Sbjct: 362 LIGDFSKVYALPTV-TGRHQDLRYITGETLAALMHGDFNSLVEKFFIIDCRYPYEYDGGH 420

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+ A N++ +E +   F++  +   +     KR ++IFHCE+S+ERGP + R+LR EDRA
Sbjct: 421 IKSAFNLHRQEEVTDYFLQQPL---TPLMVQKRLIIIFHCEFSSERGPKMCRFLREEDRA 477

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLR 178
            N YP+L YPE+YLL GGYK F+ ++++LCE   Y PM    ++   L+
Sbjct: 478 SNDYPSLYYPELYLLKGGYKDFFPEYKELCEPQSYCPMHHQDFREDLLK 526

This protein functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It may directly dephosphorylate p34(cdc2) and activate the p34(cdc2) kinase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P30310|MPIP2_XENLA M-phase inducer phosphatase 2 OS=Xenopus laevis GN=cdc25-2 PE=2 SV=1

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 118/169 (69%), Gaps = 5/169 (2%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LP V  G+H DL+ I+ +TLA L+ G+FN +V+K+ IIDCRYPYEY GGH
Sbjct: 411 LIGDFSKVYALPTV-TGRHQDLRYITGETLAALMHGDFNSLVEKFFIIDCRYPYEYDGGH 469

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+ A N++ +E +   F++  +   +     KR ++IFHCE+S+ERGP + R+LR EDRA
Sbjct: 470 IKSAFNLHRQEEVTDYFLQQPL---TPLMVQKRLIIIFHCEFSSERGPKMCRFLREEDRA 526

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLR 178
            N YP+L YPE+YLL GGYK F+ ++++LCE   Y PM    ++   L+
Sbjct: 527 SNDYPSLYYPELYLLKGGYKDFFPEYKELCEPQSYCPMHHQDFREDLLK 575

This protein functions as a dosage-dependent inducer in mitotic control. It is a tyrosine protein phosphatase required for progression of the cell cycle. It may directly dephosphorylate p34(cdc2) and activate the p34(cdc2) kinase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
193636633	553	PREDICTED: m-phase inducer phosphatase 3	0.701	0.327	0.585	2e-54
170030652	595	M-phase inducer phosphatase 2 [Culex qui	0.682	0.295	0.532	5e-50
347969633	705	AGAP003301-PA [Anopheles gambiae str. PE	0.678	0.248	0.534	2e-49
195445675	503	GK11032 [Drosophila willistoni] gi|19416	0.674	0.345	0.521	2e-48
346474178	436	hypothetical protein [Amblyomma maculatu	0.682	0.403	0.518	8e-48
157105107	371	m-phase inducer phosphatase(cdc25) [Aede	0.678	0.471	0.508	3e-47
254728794	341	Cdc25 phosphatase [Chymomyza costata]	0.639	0.483	0.554	1e-46
443695819	511	hypothetical protein CAPTEDRAFT_167620 [	0.624	0.315	0.548	6e-46
194765218	482	GF22894 [Drosophila ananassae] gi|190614	0.674	0.360	0.527	9e-46
195112394	508	GI22346 [Drosophila mojavensis] gi|19391	0.674	0.342	0.5	1e-45

>gi|193636633|ref|XP_001948575.1| PREDICTED: m-phase inducer phosphatase 3-like [Acyrthosiphon pisum]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 142/193 (73%), Gaps = 12/193 (6%)

Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
           NLIGDFS+ FILPL+  G+H DL++ISPDTLA L+ G FND +D YLIIDCRYPYEY+GG
Sbjct: 349 NLIGDFSQSFILPLLSLGRHADLRSISPDTLAHLLEGTFNDCIDSYLIIDCRYPYEYEGG 408

Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCD---KRRVLIFHCEYSAERGPTLSRYLRS 126
           HI+GA+NI+T+E L+K++ E K+  +S+ T     KR VLIFHCE+S+ERGP+LSRYLR+
Sbjct: 409 HIRGAVNIFTKEQLLKDYTEDKLGKKSHKTDKINVKRNVLIFHCEFSSERGPSLSRYLRN 468

Query: 127 EDRAHNA--YPTLDYPEMYLLNGGYKQFYAQHQDLC-EGGYLPMADPGYKS--RYLRSED 181
            DR  N+  YP LDYPEMYLL+GGY +FY+QH  LC    Y  M DP + S  R  RS+ 
Sbjct: 469 ADRQKNSMCYPYLDYPEMYLLDGGYCKFYSQHSRLCVPSSYRSMYDPAHTSELRKFRSKS 528

Query: 182 RA---HN-AYPTL 190
           +    HN A P L
Sbjct: 529 KTWACHNEATPRL 541

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030652|ref|XP_001843202.1| M-phase inducer phosphatase 2 [Culex quinquefasciatus] gi|167867878|gb|EDS31261.1| M-phase inducer phosphatase 2 [Culex quinquefasciatus]

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/184 (53%), Positives = 135/184 (73%), Gaps = 8/184 (4%)

Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
           +LIGDFSK + LPL+ DG+H DLK+ISPDT+A L+R  F++ V  + IIDCRYPYE++GG
Sbjct: 370 DLIGDFSKSYTLPLM-DGRHRDLKSISPDTMADLLRSSFDERVASFKIIDCRYPYEFEGG 428

Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCD--KRRVLIFHCEYSAERGPTLSRYLRSE 127
           HI+GALN+YT+E +++E I SK    +  T D  KR +++FHCE+S+ERGP LSR+LR+ 
Sbjct: 429 HIRGALNLYTQEQILEELIRSKTEPPTVETNDLTKRNIIVFHCEFSSERGPKLSRFLRNH 488

Query: 128 DRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS--RYLRSEDR 182
           DR  N  +YP L YPE+YLL+GGYK F+A H DLC+   Y PM DP +    R+ R++ +
Sbjct: 489 DRILNSDSYPALHYPEIYLLHGGYKDFFAAHPDLCDPIAYRPMLDPNFGDAYRHFRAKSK 548

Query: 183 AHNA 186
           + N 
Sbjct: 549 SWNG 552

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969633|ref|XP_319526.5| AGAP003301-PA [Anopheles gambiae str. PEST] gi|333469659|gb|EAA14645.5| AGAP003301-PA [Anopheles gambiae str. PEST]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/187 (53%), Positives = 138/187 (73%), Gaps = 12/187 (6%)

Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
           +LIGDFSK ++LPL+ +G+H DLK+IS DT+ARL+RG++ND +  + IIDCRYPYEY+GG
Sbjct: 488 DLIGDFSKSYVLPLM-EGQHRDLKSISGDTMARLVRGDYNDKIASFKIIDCRYPYEYEGG 546

Query: 70  HIQGALNIYTREHLVKEFIES-----KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYL 124
           HI+GA N+YT+E +V+E I+S     KV    + T  +R +++FHCE+S+ERGP LSR+L
Sbjct: 547 HIRGAKNLYTQEQIVEELIQSKTAPPKVTDGQDGTM-RRHIIVFHCEFSSERGPKLSRFL 605

Query: 125 RSEDRAHNA--YPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADP--GYKSRYLRS 179
           R+ DR  NA  YP L YPEMYLL+GGYK+F+  H +LC+   Y PM DP  G   R+ R+
Sbjct: 606 RNHDRILNADSYPALHYPEMYLLHGGYKEFFKAHAELCDPIAYRPMLDPDFGEAYRHFRA 665

Query: 180 EDRAHNA 186
           + R+ N 
Sbjct: 666 KSRSWNG 672

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445675|ref|XP_002070434.1| GK11032 [Drosophila willistoni] gi|194166519|gb|EDW81420.1| GK11032 [Drosophila willistoni]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 132/184 (71%), Gaps = 10/184 (5%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LPL+ +G+H DLK+IS +T+ARL+ GEFND V  Y IIDCRYPYE++GGH
Sbjct: 300 LIGDFSKTYCLPLM-EGRHRDLKSISSNTVARLLSGEFNDQVASYRIIDCRYPYEFEGGH 358

Query: 71  IQGALNIYTREHLVKEFIE----SKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRS 126
           I+GA N+YT E +++EF+          Q+N +  KR ++IFHCE+S+ERGP +SR+LR+
Sbjct: 359 IEGAKNLYTHEQILEEFLSTQQTELQQQQNNESGSKRNIIIFHCEFSSERGPKMSRFLRN 418

Query: 127 EDRAH--NAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS--RYLRSED 181
            DR    NAYP L YPE+YLL+ GYK+FY  H ++CE   Y PM +P Y    R+ R++ 
Sbjct: 419 LDRERNTNAYPALHYPEIYLLHNGYKEFYETHSEMCEPQTYRPMLEPAYNEAYRHFRAKS 478

Query: 182 RAHN 185
           ++ N
Sbjct: 479 KSWN 482

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346474178|gb|AEO36933.1| hypothetical protein [Amblyomma maculatum]

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 130/185 (70%), Gaps = 9/185 (4%)

Query: 5   ADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPY 64
           +D D +LIGDFSK + LPLV  GKHHDLK I P TLA +++G++  VVD+  I+DCRYP+
Sbjct: 242 SDADPDLIGDFSKPYALPLV-KGKHHDLKMILPSTLADVLQGKYISVVDEVTIVDCRYPF 300

Query: 65  EYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYL 124
           EY+GGHI+GA+N+++ E L+ EF+E    + S+     RR L+FHCE+S+ERGP LSR L
Sbjct: 301 EYEGGHIKGAVNVFSSEDLLSEFLEKAAPSSSS-----RRALVFHCEFSSERGPKLSRLL 355

Query: 125 RSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC-EGGYLPMADPGYKS--RYLRSED 181
           R +DR  N YP L +PE+Y+L GGYK FY   QDLC   GY+PM   G+++  R+ RS  
Sbjct: 356 REKDRQMNKYPALKHPEIYVLEGGYKAFYENFQDLCIPQGYIPMRHKGHEADLRWYRSMT 415

Query: 182 RAHNA 186
           +   A
Sbjct: 416 KTEAA 420

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105107|ref|XP_001648721.1| m-phase inducer phosphatase(cdc25) [Aedes aegypti] gi|108869085|gb|EAT33310.1| AAEL014408-PA, partial [Aedes aegypti]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 133/187 (71%), Gaps = 12/187 (6%)

Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
           +LIGDFSK ++LPL+ +G+H DLK+I+P  +A L+RG F+  +  + IIDCRYPYE++GG
Sbjct: 166 DLIGDFSKSYVLPLI-EGRHRDLKSITPTIMAELLRGTFDHQIASFKIIDCRYPYEFEGG 224

Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCD------KRRVLIFHCEYSAERGPTLSRY 123
           HI+GA N+YT+E +++E I+SK    + A         KR +++FHCE+S+ERGP LSR+
Sbjct: 225 HIRGAKNLYTQEQILEELIKSKTEPPTVAESSVVDAPLKRHIIVFHCEFSSERGPKLSRF 284

Query: 124 LRSEDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADP--GYKSRYLR 178
           LR+ DR  N  +YP L YPE+YLL+GGYK F+A H DLC+   Y PM DP  G   R+ R
Sbjct: 285 LRNHDRILNSDSYPALHYPEIYLLHGGYKDFFALHPDLCDPVAYRPMLDPLFGDAYRHFR 344

Query: 179 SEDRAHN 185
           S+ R+ N
Sbjct: 345 SKSRSWN 351

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|254728794|gb|ACT79564.1| Cdc25 phosphatase [Chymomyza costata]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 128/173 (73%), Gaps = 8/173 (4%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LPL+ +G+H DLK+IS +T++RL+RGEFND V  Y IIDCRYPYE++GGH
Sbjct: 163 LIGDFSKAYCLPLI-EGRHRDLKSISSNTVSRLLRGEFNDQVASYRIIDCRYPYEFEGGH 221

Query: 71  IQGALNIYTREHLVKEF---IESKVHAQSNATC-DKRRVLIFHCEYSAERGPTLSRYLRS 126
           I GA N+YT E +++EF    ++++  Q+NAT   KR ++IFHCE+S+ERGP +SR+LR+
Sbjct: 222 IAGAKNLYTHEQILEEFLTTQQTELQQQNNATAGQKRNIIIFHCEFSSERGPKMSRFLRN 281

Query: 127 EDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRY 176
            DR  N  AYP L YPE+YLL+ GYK FY  H +LCE   Y PM +P +   Y
Sbjct: 282 LDRERNTSAYPALHYPEIYLLHNGYKDFYETHAELCEPHAYRPMLEPAFNEAY 334

Source: Chymomyza costata

Species: Chymomyza costata

Genus: Chymomyza

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443695819|gb|ELT96646.1| hypothetical protein CAPTEDRAFT_167620 [Capitella teleta]

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 120/166 (72%), Gaps = 5/166 (3%)

Query: 5   ADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPY 64
            D   +LI DFSK + LPL   GKH D+K+ISP T++ L+ G ++D ++ ++I+DCRYPY
Sbjct: 313 GDSQPDLIADFSKPYCLPLC-RGKHADMKSISPQTVSELLDGVYSDRIENFVIVDCRYPY 371

Query: 65  EYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYL 124
           E+ GGHI+GALN+YTRE +  EF++S  H + NA+ DKR VLIFHCE+S+ERGP +SR+L
Sbjct: 372 EFNGGHIEGALNVYTREGIYDEFLKSSTH-RCNASSDKRTVLIFHCEFSSERGPKMSRFL 430

Query: 125 RSEDRA--HNAYPTLDYPEMYLLNGGYKQFYAQHQDLC-EGGYLPM 167
           R  DR   H  YP+L YPE+YLL GGYK F+ QHQ  C    Y PM
Sbjct: 431 RENDREANHECYPSLHYPELYLLEGGYKAFFEQHQVHCVPQTYKPM 476

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|194765218|ref|XP_001964724.1| GF22894 [Drosophila ananassae] gi|190614996|gb|EDV30520.1| GF22894 [Drosophila ananassae]

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/184 (52%), Positives = 134/184 (72%), Gaps = 10/184 (5%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LPL+ DG+H DLK+IS +T+ARL+RGEF+D V  Y IIDCRYPYE++GGH
Sbjct: 280 LIGDFSKTYALPLM-DGRHRDLKSISSETVARLLRGEFDDQVASYRIIDCRYPYEFEGGH 338

Query: 71  IQGALNIYTREHLVKEFIES---KVHAQSNA-TCDKRRVLIFHCEYSAERGPTLSRYLRS 126
           I+GA N+YT E +++EF+ +   ++  Q NA +  KR ++IFHCE+S+ERGP +SR+LR+
Sbjct: 339 IEGAKNLYTTEQILEEFLTAQQTELQQQQNADSGHKRNIIIFHCEFSSERGPKMSRFLRN 398

Query: 127 EDRAH--NAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS--RYLRSED 181
            DR    NAYP L YPE+YLL+ GYK+F+  H + CE   Y  M DP Y    R+ R++ 
Sbjct: 399 LDRERNTNAYPALHYPEIYLLHNGYKEFFETHVEHCEPHAYRTMLDPAYNEAYRHFRAKS 458

Query: 182 RAHN 185
           ++ N
Sbjct: 459 KSWN 462

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112394|ref|XP_002000758.1| GI22346 [Drosophila mojavensis] gi|193917352|gb|EDW16219.1| GI22346 [Drosophila mojavensis]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/184 (50%), Positives = 133/184 (72%), Gaps = 10/184 (5%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK + LPL+ +G+H DLK+IS +T+A+L+ G+F+  V  Y IIDCRYPYEY GGH
Sbjct: 304 LIGDFSKTYALPLM-EGRHRDLKSISSETVAQLLNGKFDHQVASYRIIDCRYPYEYDGGH 362

Query: 71  IQGALNIYTREHLVKEFI---ESKVHAQSNATC-DKRRVLIFHCEYSAERGPTLSRYLRS 126
           I+GA N+YT E +++EF+   ++++  Q NA   +KR ++IFHCE+S+ERGP +SR+LR+
Sbjct: 363 IRGAKNLYTHEQILEEFLSATQTELQQQQNAAAGNKRHIIIFHCEFSSERGPKMSRFLRN 422

Query: 127 EDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS--RYLRSED 181
            DR  N  AYP L YPE+YLL+ GYK+F+    +LC+   Y PM +P Y    R+ R++ 
Sbjct: 423 LDRERNTHAYPALHYPEIYLLHNGYKEFFETQSELCQPSAYRPMLEPAYNEAYRHFRAKS 482

Query: 182 RAHN 185
           ++ N
Sbjct: 483 KSWN 486

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0003525	479	stg "string" [Drosophila melan	0.674	0.363	0.521	2.9e-48
UNIPROTKB|E2RGM8	476	CDC25C "Uncharacterized protei	0.658	0.357	0.491	2.4e-44
UNIPROTKB|A5D7P0	477	CDC25C "M-phase inducer phosph	0.655	0.354	0.5	2.4e-44
UNIPROTKB|Q29029	502	CDC25C "M-phase inducer phosph	0.655	0.336	0.494	1e-43
UNIPROTKB|P30307	473	CDC25C "M-phase inducer phosph	0.658	0.359	0.48	1e-43
UNIPROTKB|B4DIG0	516	CDC25B "cDNA FLJ53333, highly	0.643	0.321	0.505	1.7e-43
UNIPROTKB|G8JLH2	489	CDC25B "M-phase inducer phosph	0.643	0.339	0.505	1.7e-43
UNIPROTKB|P30305	580	CDC25B "M-phase inducer phosph	0.643	0.286	0.505	1.7e-43
RGD|621500	574	Cdc25b "cell division cycle 25	0.635	0.285	0.505	7.3e-43
UNIPROTKB|D2KX74	574	CDC25B "Cell division cycle 25	0.616	0.277	0.5	1.5e-42

FB|FBgn0003525 stg "string" [Drosophila melanogaster (taxid:7227)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 96/184 (52%), Positives = 134/184 (72%)

Query:    11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
             LIGDFSK + LPL+ +G+H DLK+IS +T+ARL++GEF+D V  Y IIDCRYPYE++GGH
Sbjct:   277 LIGDFSKAYALPLM-EGRHRDLKSISSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGH 335

Query:    71 IQGALNIYTREHLVKEFI---ESKVHAQSNATCD-KRRVLIFHCEYSAERGPTLSRYLRS 126
             I+GA N+YT E ++ EF+   ++++  Q NA    KR ++IFHCE+S+ERGP +SR+LR+
Sbjct:   336 IEGAKNLYTTEQILDEFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRN 395

Query:   127 EDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS--RYLRSED 181
              DR  N  AYP L YPE+YLL+ GYK+F+  H +LCE   Y  M DP Y    R+ R++ 
Sbjct:   396 LDRERNTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRHFRAKS 455

Query:   182 RAHN 185
             ++ N
Sbjct:   456 KSWN 459

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS;NAS;IMP;TAS

GO:0006470 "protein dephosphorylation" evidence=NAS;IDA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IDA

GO:0005694 "chromosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007369 "gastrulation" evidence=IMP;NAS

GO:0007498 "mesoderm development" evidence=TAS

GO:0007099 "centriole replication" evidence=IMP

GO:0004726 "non-membrane spanning protein tyrosine phosphatase activity" evidence=NAS

GO:0007088 "regulation of mitosis" evidence=NAS

GO:0007424 "open tracheal system development" evidence=TAS

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=NAS

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0007049 "cell cycle" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0060305 "regulation of cell diameter" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IMP

UNIPROTKB|E2RGM8 CDC25C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 86/175 (49%), Positives = 122/175 (69%)

Query:    10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
             +LIGDFSK  +LP V  G+H DLK I+P+T+A L+ G+F  +++K+ IIDCRYPYEY GG
Sbjct:   284 SLIGDFSKVCVLPTV-SGRHQDLKYINPETVAALLTGKFQSLIEKFYIIDCRYPYEYLGG 342

Query:    70 HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
             HIQGALN+Y+++ L   F++  +         KR +++FHCE+S+ERGP + R LR EDR
Sbjct:   343 HIQGALNLYSQKELYTFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRSLREEDR 399

Query:   130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLRSEDRA 183
             A N YPTL YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR   ++
Sbjct:   400 ALNQYPTLYYPELYILKGGYRDFFPEYTELCEPRSYCPMHHQDHKAELLRCRSQS 454

GO:0050699 "WW domain binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

UNIPROTKB|A5D7P0 CDC25C "M-phase inducer phosphatase 3" [Bos taurus (taxid:9913)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 87/174 (50%), Positives = 120/174 (68%)

Query:    11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
             LIGDFSK   LP V  GKH DLK ++P+T+A L+ GEF  +++K+ IIDCRYPYEY GGH
Sbjct:   286 LIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGEFQGLIEKFYIIDCRYPYEYLGGH 344

Query:    71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
             IQGALN++++E L   F++  +    N    KR V++FHCE+S+ERGP + R LR EDR 
Sbjct:   345 IQGALNLHSQEELYNFFLKKPIVPWDN---QKRIVIVFHCEFSSERGPRMCRSLREEDRT 401

Query:   131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLRSEDRA 183
              N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR  +++
Sbjct:   402 LNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKAELLRCRNQS 455

GO:0005634 "nucleus" evidence=ISS

GO:0050699 "WW domain binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|Q29029 CDC25C "M-phase inducer phosphatase 3" [Sus scrofa (taxid:9823)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 87/176 (49%), Positives = 122/176 (69%)

Query:    11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
             LIGDFSK   LP V  G+H DLK ++P+T+A L+ G+F  +++K+ IIDCRYPYEY GGH
Sbjct:   311 LIGDFSKVCALPTV-SGRHQDLKYVNPETVAALLSGKFQGLIEKFYIIDCRYPYEYLGGH 369

Query:    71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
             IQGALN+Y++E L   F++  +         KR +++FHCE+S+ERGP + R LR EDRA
Sbjct:   370 IQGALNLYSQEELCNFFLKKPIIPLDT---QKRIIVVFHCEFSSERGPRMCRSLREEDRA 426

Query:   131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLR--SEDRA 183
              N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR  S+++A
Sbjct:   427 LNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKAELLRCRSQNKA 482

GO:0005634 "nucleus" evidence=ISS

GO:0050699 "WW domain binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|P30307 CDC25C "M-phase inducer phosphatase 3" [Homo sapiens (taxid:9606)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 84/175 (48%), Positives = 120/175 (68%)

Query:    10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
             +LIGDFSK   LP V  GKH DLK ++P+T+A L+ G+F  +++K+ +IDCRYPYEY GG
Sbjct:   281 HLIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGG 339

Query:    70 HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
             HIQGALN+Y++E L   F++  +         KR +++FHCE+S+ERGP + R LR EDR
Sbjct:   340 HIQGALNLYSQEELFNFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRCLREEDR 396

Query:   130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLRSEDRA 183
             + N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR   ++
Sbjct:   397 SLNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKTELLRCRSQS 451

GO:0007067 "mitosis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=TAS

GO:0004725 "protein tyrosine phosphatase activity" evidence=NAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IGI;TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0051726 "regulation of cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050699 "WW domain binding" evidence=IPI

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=NAS

UNIPROTKB|B4DIG0 CDC25B "cDNA FLJ53333, highly similar to M-phase inducer phosphatase 2 (EC 3.1.3.48)" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/172 (50%), Positives = 120/172 (69%)

Query:     4 LADLD-LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRY 62
             L D D   LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRY
Sbjct:   320 LLDSDHRELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRY 378

Query:    63 PYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSR 122
             PYEY+GGHI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R
Sbjct:   379 PYEYEGGHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCR 435

Query:   123 YLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYK 173
             ++R  DRA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct:   436 FIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 487

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|G8JLH2 CDC25B "M-phase inducer phosphatase 2" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/172 (50%), Positives = 120/172 (69%)

Query:     4 LADLD-LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRY 62
             L D D   LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRY
Sbjct:   293 LLDSDHRELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRY 351

Query:    63 PYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSR 122
             PYEY+GGHI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R
Sbjct:   352 PYEYEGGHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCR 408

Query:   123 YLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYK 173
             ++R  DRA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct:   409 FIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 460

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|P30305 CDC25B "M-phase inducer phosphatase 2" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/172 (50%), Positives = 120/172 (69%)

Query:     4 LADLD-LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRY 62
             L D D   LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRY
Sbjct:   384 LLDSDHRELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRY 442

Query:    63 PYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSR 122
             PYEY+GGHI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R
Sbjct:   443 PYEYEGGHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCR 499

Query:   123 YLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYK 173
             ++R  DRA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct:   500 FIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 551

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001556 "oocyte maturation" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005622 "intracellular" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IMP

GO:0000922 "spindle pole" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0019901 "protein kinase binding" evidence=IPI

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=TAS

RGD|621500 Cdc25b "cell division cycle 25B" [Rattus norvegicus (taxid:10116)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 86/170 (50%), Positives = 120/170 (70%)

Query:    11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
             LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++V+K++I+DCRYPYEY+GGH
Sbjct:   386 LIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVEKFVIVDCRYPYEYEGGH 444

Query:    71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
             I+ A+N+   E   + F+    H  +    DKR +LIFHCE+S+ERGP + R++R  DRA
Sbjct:   445 IKNAVNL-PLEPDAETFLLK--HPITPCNLDKRIILIFHCEFSSERGPRMCRFIRERDRA 501

Query:   131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLRS 179
              N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    ++   LR+
Sbjct:   502 ANDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHAAFRDE-LRN 550

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA;ISO;ISS

GO:0001556 "oocyte maturation" evidence=IEA;ISO

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISO

GO:0007067 "mitosis" evidence=IGI

GO:0007144 "female meiosis I" evidence=IEA;ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA;ISO

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA;ISO

UNIPROTKB|D2KX74 CDC25B "Cell division cycle 25 homolog B" [Sus scrofa (taxid:9823)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 82/164 (50%), Positives = 116/164 (70%)

Query:    11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
             LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++V++++I+DCRYPYEY+GGH
Sbjct:   386 LIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVERFVIVDCRYPYEYEGGH 444

Query:    71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
             I+ A+N+          +++ +  +S    DKR +LIFHCE+S+ERGP + R++R  DRA
Sbjct:   445 IKTAVNLPLERDAENFLLQNPITPRS---LDKRIILIFHCEFSSERGPRMCRFIRERDRA 501

Query:   131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYK 173
              N YP+L YPEMY+L GGYK+F+ QH   CE   Y PM    +K
Sbjct:   502 SNDYPSLYYPEMYILKGGYKEFFPQHPTFCEPQDYRPMNHEAFK 545

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001556 "oocyte maturation" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P20483	MPIP_DROME	3, ., 1, ., 3, ., 4, 8	0.5189	0.6782	0.3653	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.691
3rd Layer	3.1.3.48	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
cd01530	121	cd01530, Cdc25, Cdc25 phosphatases are members of	3e-56
COG5105	427	COG5105, MIH1, Mitotic inducer, protein phosphatas	7e-41
cd01443	113	cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of	1e-22
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	2e-18
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	4e-14
cd01531	113	cd01531, Acr2p, Eukaryotic arsenate resistance pro	1e-10
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	2e-09
cd01446	132	cd01446, DSP_MapKP, N-terminal regulatory rhodanes	2e-07
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	0.003

>gnl|CDD|238788 cd01530, Cdc25, Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

 Score =  175 bits (446), Expect = 3e-56
 Identities = 67/125 (53%), Positives = 95/125 (76%), Gaps = 6/125 (4%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
           LK ISP+TLARL++G++++  DKY+IIDCR+PYEY GGHI+GA+N+ T++ L + F++  
Sbjct: 1   LKRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDK- 59

Query: 92  VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA--HNAYPTLDYPEMYLLNGGY 149
                 A+  KRRVLIFHCE+S++RGP ++R+LR+ DR    N YP L YPE+Y+L GGY
Sbjct: 60  ---PGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGY 116

Query: 150 KQFYA 154
           K F+ 
Sbjct: 117 KNFFE 121

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR). Length = 121

>gnl|CDD|227436 COG5105, MIH1, Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

 Score =  145 bits (366), Expect = 7e-41
 Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 11/168 (6%)

Query: 18  QFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
            F LP +  GK   ++ IS +TL +++ G +N    K +IIDCR+ YEY+GGHI  A+NI
Sbjct: 227 VFPLPTLGPGKSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNI 286

Query: 78  YTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA--YP 135
            + + L   F   K            R LIFHCE+S+ R P L+++LR+ DR  N   YP
Sbjct: 287 SSTKKLGLLFR-HKPLTH-------PRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYP 338

Query: 136 TLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLRSEDR 182
            L YPE+Y+L GGYK+FY+ + DLC+  GY+ M +     R L   D+
Sbjct: 339 LLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDK 386

Length = 427

>gnl|CDD|238720 cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

 Score = 89.0 bits (221), Expect = 1e-22
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
           LK ISP+ L  L+    ++    ++++D R   +Y+GGHI+G++N+        + +   
Sbjct: 1   LKYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPA--QSCYQTLPQV 57

Query: 92  VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
               S       ++ IF+C  S  RGP  +R+     R          P+ Y+L GG K 
Sbjct: 58  YALFSL---AGVKLAIFYCGSSQGRGPRAARWFADYLRK----VGESLPKSYILTGGIKA 110

Query: 152 FY 153
           +Y
Sbjct: 111 WY 112

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR). Length = 113

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 14/107 (13%)

Query: 53  DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQS---NATCDKRRVLIFH 109
           +K +++D R P EY+GGHI GA+NI   E L +      +  +        DK + ++ +
Sbjct: 3   EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVY 62

Query: 110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156
           C  S  R    +  LR           L +  +YLL+GGYK++ A  
Sbjct: 63  C-RSGNRSAKAAWLLRE----------LGFKNVYLLDGGYKEWSAAG 98

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 66.4 bits (162), Expect = 4e-14
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 36  SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQ 95
           + + L  L+        D  ++ID R P EY  GHI GA+NI     L           +
Sbjct: 1   TAEELKALLEA------DDVVLIDVRSPEEYAKGHIPGAVNI--PLSLPSLDKLESELEE 52

Query: 96  SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155
                DK + ++ +C      G   +  L    +A        Y  +Y+L+GG++ + A+
Sbjct: 53  LGKKLDKDKTIVVYCASGNRSGQAAALLLALILKALG------YKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|238789 cd01531, Acr2p, Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 22/123 (17%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI-YTREHLVKEFIES 90
           +  ISP  L   IR           ++D R   +Y GGHI+G+ +   TR        + 
Sbjct: 1   VSYISPAQLKGWIRNGRPPFQ----VVDVR-DEDYAGGHIKGSWHYPSTRFKA-----QL 50

Query: 91  KVHAQSNATCDKRRVLIFHCEYSAERGPT----LSRYLRSEDRAHNAYPTLDYPEMYLLN 146
               Q  +   K  V +FHC  S  RGP+      RYL  ED   +        E+Y+L+
Sbjct: 51  NQLVQLLSGSKKDTV-VFHCALSQVRGPSAARKFLRYLDEEDLETSK------FEVYVLH 103

Query: 147 GGY 149
           GG+
Sbjct: 104 GGF 106

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs. Length = 113

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 26/112 (23%)

Query: 39  TLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNA 98
            L  L+  E        +++D R P EY  GHI GA+NI      + E  E     +   
Sbjct: 1   ELKELLDDE------DAVLLDVREPEEYAAGHIPGAINI-----PLSELEERAALLE--- 46

Query: 99  TCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
             DK + ++ +C  S  R    ++ LR                +Y L GG  
Sbjct: 47  -LDKDKPIVVYC-RSGNRSARAAKLLRK----------AGGTNVYNLEGGML 86

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|238723 cd01446, DSP_MapKP, N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 17/137 (12%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
           I    LA L+R       ++ L++DCR   EY   HI+GA+N+     L +     K+  
Sbjct: 2   IDCAWLAALLREG----GERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILL 57

Query: 95  QSNATC--DKRRV-LIFHCE---YSAERGPTLSRYLRSEDRAHNAYPTL-----DYPEMY 143
           Q   +C  D+ R+          Y           LR +  A +    L     +   +Y
Sbjct: 58  QQLLSCPEDRDRLRRGESLAVVVYDESSSDRER--LREDSTAESVLGKLLRKLQEGCSVY 115

Query: 144 LLNGGYKQFYAQHQDLC 160
           LL GG++QF ++  +LC
Sbjct: 116 LLKGGFEQFSSEFPELC 132

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain. Length = 132

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 58 IDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKV 92
          ID R P +Y+  HIQGA+NI  +E  +KE I + V
Sbjct: 22 IDVRIPEQYQQEHIQGAINIPLKE--IKEHIATAV 54

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG3772|consensus	325		100.0
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	99.96
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.88
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.85
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.84
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.82
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.81
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.8
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.8
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.79
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.79
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.79
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.78
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.78
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.78
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.78
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.78
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.77
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.77
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.77
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.76
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.75
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.75
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.74
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.74
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.73
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.73
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.73
PLN02160	136	thiosulfate sulfurtransferase	99.72
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.72
PRK01415	247	hypothetical protein; Validated	99.72
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.72
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.72
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.71
KOG1530|consensus	136		99.71
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.71
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.7
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.7
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.68
PRK05320	257	rhodanese superfamily protein; Provisional	99.67
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.66
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.65
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.64
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.63
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.62
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.58
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.57
PRK07411	390	hypothetical protein; Validated	99.57
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.56
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.55
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.53
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.51
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.5
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.48
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.42
COG1054	308	Predicted sulfurtransferase [General function pred	99.26
KOG1529|consensus	286		99.12
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	98.97
KOG2017|consensus	427		98.77
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.44
KOG1529|consensus	286		98.37
KOG3772|consensus	325		98.36
KOG1717|consensus	343		98.02
COG2603	334	Predicted ATPase [General function prediction only	96.78
KOG1093|consensus	725		95.45
KOG3636|consensus	669		93.28
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	90.6
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	90.58
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	88.18
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	87.99
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	84.13

>KOG3772|consensus

Probab=100.00  E-value=4.1e-40  Score=293.36  Aligned_cols=170  Identities=52%  Similarity=1.054  Sum_probs=137.0

Q ss_pred             ccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhh
Q psy1013          16 SKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQ   95 (258)
Q Consensus        16 s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~   95 (258)
                      ++.+.||++ +++++.+++||+++|+.+|++.+.+....++|||||+|+||.+|||+||+||+..+.+...+....    
T Consensus       140 s~~y~Lptv-~~k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~----  214 (325)
T KOG3772|consen  140 SKAYLLPTV-DGKSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKD----  214 (325)
T ss_pred             ccceecccc-CcccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhcccc----
Confidence            889999999 679999999999999999999888777779999999999999999999999999443333333211    


Q ss_pred             ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc--cCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCc
Q psy1013          96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYK  173 (258)
Q Consensus        96 ~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n--~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~  173 (258)
                      ......+..++||||++|+.|||+||+.|++.||.+|  +||.|.|+++|||+|||++|+..++++|+            
T Consensus       215 ~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~LCe------------  282 (325)
T KOG3772|consen  215 GVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNLCE------------  282 (325)
T ss_pred             ccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcccccC------------
Confidence            1112246788999999999999999999998876554  55555555555555555555554444444            


Q ss_pred             ccccccccccccCCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccHHHHHHHHhhccccccc
Q psy1013         174 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCD  242 (258)
Q Consensus       174 ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~~~~~~~~~~~~~~~~~  242 (258)
                                                              |.+|+||.|++|..+++.|+.++++|++.
T Consensus       283 ----------------------------------------P~~Yv~M~h~~~~~~~k~~~~~~~~~~~~  311 (325)
T KOG3772|consen  283 ----------------------------------------PQSYVPMHHEAFKDELKRFRTKSRSWSGE  311 (325)
T ss_pred             ----------------------------------------ccceecccchhHHHHHhhhcccccccccc
Confidence                                                    99999999999999999999999999999

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=99.96  E-value=7.1e-30  Score=225.13  Aligned_cols=166  Identities=40%  Similarity=0.757  Sum_probs=130.0

Q ss_pred             ccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCC
Q psy1013          22 PLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCD  101 (258)
Q Consensus        22 p~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~  101 (258)
                      |+...++...++.||+++|.++|++.+.+...+++|||||-++||.+|||-.||||.....+...|...        +..
T Consensus       231 ~~~~~~k~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~~F~hk--------plT  302 (427)
T COG5105         231 PTLGPGKSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHK--------PLT  302 (427)
T ss_pred             ccCCCCcccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHHHHHhc--------ccc
Confidence            444345667899999999999999988877778999999999999999999999999966665555531        224


Q ss_pred             CceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCccccccccc
Q psy1013         102 KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSED  181 (258)
Q Consensus       102 ~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~~re~d  181 (258)
                      .+..+||||++|+.|+|.+|..||.+||..|.                                                
T Consensus       303 hp~aLifHCEfSshRaP~LA~HlRN~DR~~N~------------------------------------------------  334 (427)
T COG5105         303 HPRALIFHCEFSSHRAPRLAQHLRNMDRMKNP------------------------------------------------  334 (427)
T ss_pred             CceeEEEEeecccccchhHHHHHhhhhhhcCc------------------------------------------------
Confidence            57789999999999999999999999876551                                                


Q ss_pred             ccccCCCCCCCCceeeechhhHHHHhhhccCC-CCCcccCCCccc----HHHHHHHHhhccccccccccc
Q psy1013         182 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC-EGGYLPMADPGY----KSDFQTFRSKSKTWSCDYKAN  246 (258)
Q Consensus       182 r~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c-~~~y~~m~~~~~----~~~~~~~~~~~~~~~~~~~~~  246 (258)
                         +.||.|.|||||||+||||.||+.|+++| |.+||+|.+..+    .+++.+||..+|-++...+..
T Consensus       335 ---dhYP~L~yPevyIl~GGYk~fy~n~p~lCdP~~YV~Mn~ae~~~~c~~~mdkfrrn~kffaTKn~sF  401 (427)
T COG5105         335 ---DHYPLLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDKFRRNKKFFATKNNSF  401 (427)
T ss_pred             ---ccCcccccceEEEecCcHHHHhhcCccccCcccccccccHHHHHHHHHHHHHHhhhchhhhcccccc
Confidence               13555555666666666777777777777 999999999765    356678988877666555544

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.2e-22  Score=158.83  Aligned_cols=117  Identities=58%  Similarity=1.127  Sum_probs=91.6

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCch-hhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTRE-HLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~-~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      +..||++++.+++++..+...++++|||||++.||..||||||+|+|. . .+...+.. .   ......++...|||||
T Consensus         1 ~~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~-~~~l~~~~~~-~---~~~~~~~~~~~vv~yC   75 (121)
T cd01530           1 LKRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLST-KDELEEFFLD-K---PGVASKKKRRVLIFHC   75 (121)
T ss_pred             CCccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCc-HHHHHHHHHH-h---hcccccCCCCEEEEEC
Confidence            357999999999976311011468999999999999999999999999 4 34333221 1   0001124667799999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcc--cCCCCCCCCeEEecchHHHHH
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n--~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      ..++.||+.+|+.|+..+|..+  .||.+||++|++|+|||.+|+
T Consensus        76 ~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          76 EFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             CCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            8799999999999999988877  789999999999999999995

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.85  E-value=7e-21  Score=147.01  Aligned_cols=103  Identities=20%  Similarity=0.281  Sum_probs=83.8

Q ss_pred             CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEE
Q psy1013          28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLI  107 (258)
Q Consensus        28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV  107 (258)
                      ....++.|+++++.++++.+     .+.+|||+|++.||..||||||+|+|+ .++... +.     .  ...++...||
T Consensus         5 ~~~~~~~i~~~~l~~~~~~~-----~~~~liDvR~~~e~~~ghIpgainip~-~~l~~~-~~-----~--l~~~~~~~iv   70 (109)
T cd01533           5 AVRHTPSVSADELAALQARG-----APLVVLDGRRFDEYRKMTIPGSVSCPG-AELVLR-VG-----E--LAPDPRTPIV   70 (109)
T ss_pred             ccccCCcCCHHHHHHHHhcC-----CCcEEEeCCCHHHHhcCcCCCceeCCH-HHHHHH-HH-----h--cCCCCCCeEE
Confidence            34556789999999999864     468999999999999999999999999 655432 21     1  1223344588


Q ss_pred             EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCC-eEEecchHHHHHHh
Q psy1013         108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPE-MYLLNGGYKQFYAQ  155 (258)
Q Consensus       108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~-V~iL~GG~~~w~~~  155 (258)
                      +||. ++.||..+++.|+..          ||++ |++|+||+.+|...
T Consensus        71 v~C~-~G~rs~~a~~~L~~~----------G~~~~v~~l~gG~~~W~~~  108 (109)
T cd01533          71 VNCA-GRTRSIIGAQSLINA----------GLPNPVAALRNGTQGWTLA  108 (109)
T ss_pred             EECC-CCchHHHHHHHHHHC----------CCCcceeEecCCHHHHHhc
Confidence            9999 889999999999999          9988 99999999999863

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=6.2e-21  Score=145.25  Aligned_cols=99  Identities=23%  Similarity=0.425  Sum_probs=79.0

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEY  112 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~  112 (258)
                      +.||++++.+++++      ++++|||||++.||..||||||+|+|. +.+... .. .+....  ..++...||+||. 
T Consensus         2 ~~is~~~l~~~~~~------~~~~iiDvR~~~e~~~ghi~gA~~ip~-~~~~~~-~~-~~~~~~--~~~~~~~ivvyC~-   69 (101)
T cd01518           2 TYLSPAEWNELLED------PEVVLLDVRNDYEYDIGHFKGAVNPDV-DTFREF-PF-WLDENL--DLLKGKKVLMYCT-   69 (101)
T ss_pred             CcCCHHHHHHHHcC------CCEEEEEcCChhhhhcCEeccccCCCc-ccHhHh-HH-HHHhhh--hhcCCCEEEEECC-
Confidence            36899999999975      679999999999999999999999999 554321 11 111001  1134455899999 


Q ss_pred             CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         113 SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       113 s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      +|.|+..+++.|+..          ||.+|++|+||+.+|.
T Consensus        70 ~G~rs~~a~~~L~~~----------G~~~v~~l~GG~~~W~  100 (101)
T cd01518          70 GGIRCEKASAYLKER----------GFKNVYQLKGGILKYL  100 (101)
T ss_pred             CchhHHHHHHHHHHh----------CCcceeeechhHHHHh
Confidence            899999999999998          9999999999999996

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.82  E-value=4.8e-20  Score=138.87  Aligned_cols=94  Identities=22%  Similarity=0.317  Sum_probs=75.8

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA  114 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  114 (258)
                      ||+++|.+++..+    .++++|||+|++.||..||||||+|+|. ..+......        ....+...||+||. +|
T Consensus         1 is~~~l~~~~~~~----~~~~~liDvR~~~e~~~ghipga~~ip~-~~l~~~~~~--------~~~~~~~~iv~~c~-~G   66 (95)
T cd01534           1 IGAAELARWAAEG----DRTVYRFDVRTPEEYEAGHLPGFRHTPG-GQLVQETDH--------FAPVRGARIVLADD-DG   66 (95)
T ss_pred             CCHHHHHHHHHcC----CCCeEEEECCCHHHHHhCCCCCcEeCCH-HHHHHHHHH--------hcccCCCeEEEECC-CC
Confidence            6899999999863    0268899999999999999999999999 655432111        11123345899999 89


Q ss_pred             CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      .|+..++..|+..          ||+ |++|+||+.+|.
T Consensus        67 ~rs~~aa~~L~~~----------G~~-v~~l~GG~~~W~   94 (95)
T cd01534          67 VRADMTASWLAQM----------GWE-VYVLEGGLAAAL   94 (95)
T ss_pred             ChHHHHHHHHHHc----------CCE-EEEecCcHHHhc
Confidence            9999999999888          998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=9.9e-20  Score=138.25  Aligned_cols=99  Identities=18%  Similarity=0.289  Sum_probs=77.4

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA  114 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  114 (258)
                      ||+++|.++++++     ++.+|||||++.||+.||||||+|+|. ..+...++..........+  +...||+||. +|
T Consensus         1 is~~el~~~l~~~-----~~~~liDvR~~~e~~~ghi~ga~~ip~-~~~~~~~~~~~~~~~~~~~--~~~~ivv~C~-~G   71 (100)
T cd01523           1 LDPEDLYARLLAG-----QPLFILDVRNESDYERWKIDGENNTPY-FDPYFDFLEIEEDILDQLP--DDQEVTVICA-KE   71 (100)
T ss_pred             CCHHHHHHHHHcC-----CCcEEEEeCCHHHHhhcccCCCccccc-ccchHHHHHhhHHHHhhCC--CCCeEEEEcC-CC
Confidence            6899999999875     578999999999999999999999999 5554433110000001122  3345888999 88


Q ss_pred             CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      .||..++..|+..          ||. |++|+||+.+|.
T Consensus        72 ~rs~~aa~~L~~~----------G~~-~~~l~GG~~~W~   99 (100)
T cd01523          72 GSSQFVAELLAER----------GYD-VDYLAGGMKAWS   99 (100)
T ss_pred             CcHHHHHHHHHHc----------Cce-eEEeCCcHHhhc
Confidence            9999999999999          998 999999999995

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.80  E-value=3.2e-19  Score=137.48  Aligned_cols=100  Identities=18%  Similarity=0.431  Sum_probs=81.9

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.|++++|.+++++      ++.+|||+|++.||..||||||+|+|. ..+.. ++..       ...+  ..+|+|
T Consensus         2 ~~~~~is~~el~~~l~~------~~~~ivDvR~~~e~~~ghi~gA~~ip~-~~l~~-~~~~-------~~~~--~~ivv~   64 (108)
T PRK00162          2 DQFECINVEQAHQKLQE------GGAVLVDIRDPQSFAMGHAPGAFHLTN-DSLGA-FMRQ-------ADFD--TPVMVM   64 (108)
T ss_pred             CCccccCHHHHHHHHHc------CCCEEEEcCCHHHHhcCCCCCCeECCH-HHHHH-HHHh-------cCCC--CCEEEE
Confidence            35788999999999976      568899999999999999999999998 55433 2221       2233  347788


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ  157 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~  157 (258)
                      |. ++.++..++..|+..          ||++|++|+||+.+|...+.
T Consensus        65 c~-~g~~s~~a~~~L~~~----------G~~~v~~l~GG~~~w~~~~~  101 (108)
T PRK00162         65 CY-HGNSSQGAAQYLLQQ----------GFDVVYSIDGGFEAWRRTFP  101 (108)
T ss_pred             eC-CCCCHHHHHHHHHHC----------CchheEEecCCHHHHHhcCC
Confidence            98 788999999999999          99999999999999988543

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=2.7e-19  Score=142.37  Aligned_cols=101  Identities=27%  Similarity=0.429  Sum_probs=75.4

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHH---------------------hhHHH
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI---------------------ESKVH   93 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~---------------------~~~~~   93 (258)
                      ||++|+.+++++       +.+|||||++.||..||||||+|+|+ ........                     ...+.
T Consensus         1 ~s~~el~~~l~~-------~~~iiDvR~~~e~~~ghIpgAinip~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (128)
T cd01520           1 ITAEDLLALRKA-------DGPLIDVRSPKEFFEGHLPGAINLPL-LDDEERALVGTLYKQQGREAAIELGLELVSGKLK   72 (128)
T ss_pred             CCHHHHHHHHhc-------CCEEEECCCHHHhccCcCCCcEEccC-CChhHHHHhhhheeccCHHHHHHHHHHHHhhhHH
Confidence            789999999873       47899999999999999999999999 43321100                     00000


Q ss_pred             ---hhcc-ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          94 ---AQSN-ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        94 ---~~~~-~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                         .... ..-++...||+||..++.||.++++.|+.+          || +|++|+||+.+|..
T Consensus        73 ~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~----------G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          73 RILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESL----------GI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHc----------CC-ceeEeCCcHHHHHh
Confidence               0000 112344558999986789999999999999          99 69999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=1.9e-19  Score=137.49  Aligned_cols=102  Identities=21%  Similarity=0.356  Sum_probs=76.3

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH--HHhhHHHhhccccCCCceEEEEecCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE--FIESKVHAQSNATCDKRRVLIFHCEY  112 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~--~~~~~~~~~~~~~~~~~~~vV~yc~~  112 (258)
                      ||++||.+++..+    .++++|||||++.||..||||||+|+|. +.+...  ..... .........+...||+||. 
T Consensus         1 is~~~l~~~l~~~----~~~~~liDvR~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~c~-   73 (105)
T cd01525           1 ISVYDVIRLLDNS----PAKLAAVDIRSSPDFRRGHIEGSINIPF-SSVFLKEGELEQL-PTVPRLENYKGKIIVIVSH-   73 (105)
T ss_pred             CCHHHHHHHHhCC----CCCeEEEECCCHHHHhCCccCCCEeCCH-HHhcccccccccc-cchHHHHhhcCCeEEEEeC-
Confidence            7899999999862    1378999999999999999999999998 544211  00000 0000001122455889998 


Q ss_pred             CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         113 SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       113 s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      ++.++..+++.|+..          ||++|++|+||+.+|+
T Consensus        74 ~g~~s~~~a~~L~~~----------G~~~v~~l~GG~~a~~  104 (105)
T cd01525          74 SHKHAALFAAFLVKC----------GVPRVCILDGGINALK  104 (105)
T ss_pred             CCccHHHHHHHHHHc----------CCCCEEEEeCcHHHhc
Confidence            788999999999999          9999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=7.5e-19  Score=138.54  Aligned_cols=106  Identities=18%  Similarity=0.237  Sum_probs=81.8

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh--hHHHhhccccCCCceEEEE
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE--SKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~--~~~~~~~~~~~~~~~~vV~  108 (258)
                      ....|++++|.++++.+     .+.+|||+|++.||+.||||||+|+|. ..+......  .........  ++...||+
T Consensus         6 ~~~~is~~el~~~~~~~-----~~~~ivDvR~~~e~~~~hIpgai~ip~-~~~~~~~~~~~~~~~~~~~~--~~~~~ivv   77 (122)
T cd01526           6 PEERVSVKDYKNILQAG-----KKHVLLDVRPKVHFEICRLPEAINIPL-SELLSKAAELKSLQELPLDN--DKDSPIYV   77 (122)
T ss_pred             cccccCHHHHHHHHhCC-----CCeEEEEcCCHHHhhcccCCCCeEccH-HHHhhhhhhhhhhhhccccc--CCCCcEEE
Confidence            34679999999999764     578999999999999999999999999 655432110  000001111  33445889


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCC-CCeEEecchHHHHHHh
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDY-PEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy-~~V~iL~GG~~~w~~~  155 (258)
                      ||. ++.|+..+++.|+..          || .+|++|+||+.+|..+
T Consensus        78 ~C~-~G~rs~~aa~~L~~~----------G~~~~v~~l~GG~~~W~~~  114 (122)
T cd01526          78 VCR-RGNDSQTAVRKLKEL----------GLERFVRDIIGGLKAWADK  114 (122)
T ss_pred             ECC-CCCcHHHHHHHHHHc----------CCccceeeecchHHHHHHH
Confidence            999 788999999999999          99 7999999999999874

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.79  E-value=7.5e-19  Score=134.69  Aligned_cols=101  Identities=30%  Similarity=0.589  Sum_probs=73.9

Q ss_pred             CHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhh-------hHHHHhhHHHhhccccCCCceEEEE
Q psy1013          36 SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHL-------VKEFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        36 s~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l-------~~~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ||+||.+++.+      ++++|||||++.+|..||||||+|+|. ..+       .......... ......++...|||
T Consensus         1 s~~el~~~l~~------~~~~liD~R~~~~~~~~hI~ga~~i~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv~   72 (113)
T PF00581_consen    1 SPEELKEMLEN------ESVLLIDVRSPEEYERGHIPGAVNIPF-PSLDPDEPSLSEDKLDEFLK-ELGKKIDKDKDIVF   72 (113)
T ss_dssp             -HHHHHHHHTT------TTEEEEEESSHHHHHHSBETTEEEEEG-GGGSSSSSBCHHHHHHHHHH-HHTHGSTTTSEEEE
T ss_pred             CHHHHHhhhhC------CCeEEEEeCCHHHHHcCCCCCCccccc-cccccccccccccccccccc-ccccccccccccee
Confidence            68999999944      789999999999999999999999999 332       1111111111 11122244456799


Q ss_pred             ecCCCCCcHHHHHHH-----HHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         109 HCEYSAERGPTLSRY-----LRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       109 yc~~s~~rs~~~a~~-----L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ||. ++.++..++..     |..+          ||++|++|+|||.+|.++
T Consensus        73 yc~-~~~~~~~~~~~~~~~~l~~~----------g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   73 YCS-SGWRSGSAAAARVAWILKKL----------GFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             EES-SSCHHHHHHHHHHHHHHHHT----------TTSSEEEETTHHHHHHHH
T ss_pred             eee-cccccchhHHHHHHHHHHHc----------CCCCEEEecChHHHHhcC
Confidence            996 78888777666     7777          999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.78  E-value=9.6e-19  Score=133.14  Aligned_cols=97  Identities=20%  Similarity=0.363  Sum_probs=78.1

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA  114 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  114 (258)
                      |++++|.+++..+    ..+.+|||+|++.||..+|||||+|+|+ ..+.. ....     +.. .++...||+||. ++
T Consensus         2 i~~~~l~~~~~~~----~~~~~iiDvR~~~e~~~~hI~ga~~ip~-~~~~~-~~~~-----~~~-~~~~~~vv~~c~-~g   68 (101)
T cd01528           2 ISVAELAEWLADE----REEPVLIDVREPEELEIAFLPGFLHLPM-SEIPE-RSKE-----LDS-DNPDKDIVVLCH-HG   68 (101)
T ss_pred             CCHHHHHHHHhcC----CCCCEEEECCCHHHHhcCcCCCCEecCH-HHHHH-HHHH-----hcc-cCCCCeEEEEeC-CC
Confidence            7899999999862    0258899999999999999999999999 55543 2221     111 133456899999 78


Q ss_pred             CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013         115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      .|+..++..|+..          ||++|++|+||+.+|..
T Consensus        69 ~rs~~~~~~l~~~----------G~~~v~~l~GG~~~w~~   98 (101)
T cd01528          69 GRSMQVAQWLLRQ----------GFENVYNLQGGIDAWSL   98 (101)
T ss_pred             chHHHHHHHHHHc----------CCccEEEecCCHHHHhh
Confidence            9999999999998          99999999999999976

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=7.4e-19  Score=134.38  Aligned_cols=100  Identities=26%  Similarity=0.369  Sum_probs=76.5

Q ss_pred             CHHHHHHHHh-cccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHH--hhHHHhhcc-ccCCCceEEEEecC
Q psy1013          36 SPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI--ESKVHAQSN-ATCDKRRVLIFHCE  111 (258)
Q Consensus        36 s~~~L~~~l~-~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~--~~~~~~~~~-~~~~~~~~vV~yc~  111 (258)
                      |++++.++++ +      ++++|||+|++.||..||||||+|+|. ..+.....  ...+...+. ...++...||+||.
T Consensus         2 ~~~~~~~~l~~~------~~~~iiDvR~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~   74 (106)
T cd01519           2 SFEEVKNLPNPH------PNKVLIDVREPEELKTGKIPGAINIPL-SSLPDALALSEEEFEKKYGFPKPSKDKELIFYCK   74 (106)
T ss_pred             cHHHHHHhcCCC------CCEEEEECCCHHHHhcCcCCCcEEech-HHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECC
Confidence            6788999887 4      679999999999999999999999999 55432211  001111111 11234456899999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                       ++.++..+++.|+.+          ||++|++|+||+.+|.
T Consensus        75 -~g~~s~~~~~~l~~~----------G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          75 -AGVRSKAAAELARSL----------GYENVGNYPGSWLDWA  105 (106)
T ss_pred             -CcHHHHHHHHHHHHc----------CCccceecCCcHHHHc
Confidence             788999999999999          9999999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=9.7e-19  Score=135.93  Aligned_cols=112  Identities=25%  Similarity=0.475  Sum_probs=79.8

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ++.|++++|.+++..+    .++++|||+|++ ||..||||||+|+|. ..+.... ... .....  .+++..||+||.
T Consensus         1 ~~~is~~~l~~~~~~~----~~~~~iiDvR~~-e~~~~hi~gA~~ip~-~~l~~~~-~~~-~~~~~--~~~~~~iv~yC~   70 (113)
T cd01531           1 VSYISPAQLKGWIRNG----RPPFQVVDVRDE-DYAGGHIKGSWHYPS-TRFKAQL-NQL-VQLLS--GSKKDTVVFHCA   70 (113)
T ss_pred             CCcCCHHHHHHHHHcC----CCCEEEEEcCCc-ccCCCcCCCCEecCH-HHHhhCH-HHH-HHHHh--cCCCCeEEEEee
Confidence            4679999999999762    035789999999 999999999999999 5553321 111 00011  133456899999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      +++.|+..++..|.+......  -..||.+|++|+||+.+|.+.
T Consensus        71 ~~~~r~~~aa~~l~~~~~~~~--~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          71 LSQVRGPSAARKFLRYLDEED--LETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             cCCcchHHHHHHHHHHHHHhc--cccCCCeEEEEcChHHHHHhh
Confidence            788899999888755211100  012999999999999999874

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=9.5e-19  Score=132.48  Aligned_cols=95  Identities=29%  Similarity=0.405  Sum_probs=78.6

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      +..|++++|.++++.      + .+|||+|++.||..||||||+|+|. ..+....        ...  ++...||+||.
T Consensus         1 ~~~i~~~el~~~~~~------~-~~liDvR~~~e~~~~hi~ga~~ip~-~~~~~~~--------~~~--~~~~~iv~~c~   62 (99)
T cd01527           1 LTTISPNDACELLAQ------G-AVLVDIREPDEYLRERIPGARLVPL-SQLESEG--------LPL--VGANAIIFHCR   62 (99)
T ss_pred             CCccCHHHHHHHHHC------C-CEEEECCCHHHHHhCcCCCCEECCh-hHhcccc--------cCC--CCCCcEEEEeC
Confidence            357999999999885      3 7899999999999999999999999 5543211        112  23345888999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       ++.++..+++.|+..          ||.+|++|+||+.+|...
T Consensus        63 -~g~~s~~~~~~L~~~----------g~~~v~~l~gG~~~W~~~   95 (99)
T cd01527          63 -SGMRTQQNAERLAAI----------SAGEAYVLEGGLDAWKAA   95 (99)
T ss_pred             -CCchHHHHHHHHHHc----------CCccEEEeeCCHHHHHHC
Confidence             889999999999999          999999999999999873

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.78  E-value=1.5e-18  Score=134.94  Aligned_cols=110  Identities=29%  Similarity=0.571  Sum_probs=78.8

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ++.||+++|.+++.++.....++++|||||++ ||..||||||+|+|. ..+...+ ..... .  ....+...||+||+
T Consensus         1 ~~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~-~~~~~~~-~~~~~-~--~~~~~~~~iv~~C~   74 (113)
T cd01443           1 LKYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPA-QSCYQTL-PQVYA-L--FSLAGVKLAIFYCG   74 (113)
T ss_pred             CcccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecch-hHHHHHH-HHHHH-H--hhhcCCCEEEEECC
Confidence            46799999999998631112236899999999 999999999999999 6654332 22211 1  11133456899999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCC--CCeEEecchHHHHH
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDY--PEMYLLNGGYKQFY  153 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy--~~V~iL~GG~~~w~  153 (258)
                      .++.||++++..|....+.      +||  .+|++|+||+.+|.
T Consensus        75 ~~g~rs~~a~~~l~~~l~~------~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          75 SSQGRGPRAARWFADYLRK------VGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCcccHHHHHHHHHHHhc------cCCCCCeEEEECChhhhhc
Confidence            6678999988776654322      264  78999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.77  E-value=1.6e-18  Score=129.24  Aligned_cols=89  Identities=30%  Similarity=0.529  Sum_probs=73.3

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA  114 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  114 (258)
                      ++++++.+++.       ++.+|||+|++.+|..||||||+|+|. +++... ..       ....+  ..||+||. ++
T Consensus         1 ~~~~e~~~~~~-------~~~~iiD~R~~~~~~~~hipgA~~ip~-~~~~~~-~~-------~~~~~--~~vvl~c~-~g   61 (90)
T cd01524           1 VQWHELDNYRA-------DGVTLIDVRTPQEFEKGHIKGAINIPL-DELRDR-LN-------ELPKD--KEIIVYCA-VG   61 (90)
T ss_pred             CCHHHHHHHhc-------CCCEEEECCCHHHHhcCCCCCCEeCCH-HHHHHH-HH-------hcCCC--CcEEEEcC-CC
Confidence            57899999883       567899999999999999999999999 654332 11       12223  34889999 78


Q ss_pred             CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      .++..+++.|+..          || +|++|+||+.+|+
T Consensus        62 ~~a~~~a~~L~~~----------G~-~v~~l~GG~~~w~   89 (90)
T cd01524          62 LRGYIAARILTQN----------GF-KVKNLDGGYKTYS   89 (90)
T ss_pred             hhHHHHHHHHHHC----------CC-CEEEecCCHHHhc
Confidence            8999999999998          99 9999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.77  E-value=1.8e-18  Score=129.79  Aligned_cols=93  Identities=25%  Similarity=0.519  Sum_probs=77.8

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc--CCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG--GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~--gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      .|+++++.++++++     .+++|||+|++.||..  ||||||+|+|. ..+.. ...       ..+  +...||+||.
T Consensus         1 ~i~~~~~~~~~~~~-----~~~~ivDvR~~~e~~~~~~hi~ga~~ip~-~~~~~-~~~-------~~~--~~~~ivv~c~   64 (96)
T cd01444           1 RISVDELAELLAAG-----EAPVLLDVRDPASYAALPDHIPGAIHLDE-DSLDD-WLG-------DLD--RDRPVVVYCY   64 (96)
T ss_pred             CcCHHHHHHHHhcC-----CCcEEEECCCHHHHhcccCCCCCCeeCCH-HHHHH-HHh-------hcC--CCCCEEEEeC
Confidence            37899999998864     5689999999999999  99999999999 55432 221       122  3445889999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                       ++.++..+++.|+..          ||++|++|+||+.+|.
T Consensus        65 -~g~~s~~a~~~l~~~----------G~~~v~~l~gG~~~w~   95 (96)
T cd01444          65 -HGNSSAQLAQALREA----------GFTDVRSLAGGFEAWR   95 (96)
T ss_pred             -CCChHHHHHHHHHHc----------CCceEEEcCCCHHHhc
Confidence             999999999999999          9999999999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.77  E-value=1.4e-18  Score=131.87  Aligned_cols=100  Identities=22%  Similarity=0.417  Sum_probs=76.3

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhh-ccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-KGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYS  113 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s  113 (258)
                      ||++++.+++++      ++.+|||+|++.+| ..||||||+|+|. ..+.. ...... ......-++...||+||. +
T Consensus         1 is~~el~~~~~~------~~~~iiDvR~~~~~~~~ghIpga~~ip~-~~~~~-~~~~~~-~~~~~~~~~~~~ivv~c~-~   70 (103)
T cd01447           1 LSPEDARALLGS------PGVLLVDVRDPRELERTGMIPGAFHAPR-GMLEF-WADPDS-PYHKPAFAEDKPFVFYCA-S   70 (103)
T ss_pred             CCHHHHHHHHhC------CCeEEEECCCHHHHHhcCCCCCcEEccc-chhhh-hcCccc-cccccCCCCCCeEEEEcC-C
Confidence            689999999986      56899999999998 5799999999998 54432 111100 000001134456899998 7


Q ss_pred             CCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013         114 AERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       114 ~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      +.++..+++.|+..          ||++|++|+||+.+|..
T Consensus        71 g~~s~~~~~~l~~~----------G~~~v~~l~Gg~~~w~~  101 (103)
T cd01447          71 GWRSALAGKTLQDM----------GLKPVYNIEGGFKDWKE  101 (103)
T ss_pred             CCcHHHHHHHHHHc----------ChHHhEeecCcHHHHhh
Confidence            88999999999998          99999999999999975

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.76  E-value=1.1e-18  Score=136.75  Aligned_cols=99  Identities=16%  Similarity=0.351  Sum_probs=78.8

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhc-cCCcCCceeCCCchhhhH-----HHHhhHHHhhccccCCCceEEEE
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK-GGHIQGALNIYTREHLVK-----EFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~-~gHIpGAvnip~~~~l~~-----~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ||++++.++++++     ++.+|||+|++.||+ .||||||+|+|. .++..     .+.. .+..  ..  ++...||+
T Consensus         1 is~~el~~~l~~~-----~~~~vIDvR~~~e~~~~ghIpgA~~ip~-~~~~~~~~~~~~~~-~l~~--~~--~~~~~ivv   69 (117)
T cd01522           1 LTPAEAWALLQAD-----PQAVLVDVRTEAEWKFVGGVPDAVHVAW-QVYPDMEINPNFLA-ELEE--KV--GKDRPVLL   69 (117)
T ss_pred             CCHHHHHHHHHhC-----CCeEEEECCCHHHHhcccCCCCceecch-hhccccccCHHHHH-HHHh--hC--CCCCeEEE
Confidence            6899999999874     579999999999999 999999999998 54431     1111 1110  11  23445889


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ||. ++.+|..+++.|+..          ||++|++|.|||.+|...
T Consensus        70 ~C~-~G~rs~~aa~~L~~~----------G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          70 LCR-SGNRSIAAAEAAAQA----------GFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             EcC-CCccHHHHHHHHHHC----------CCCeEEECcCceecCCCC
Confidence            998 889999999999999          999999999999999763

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.75  E-value=3.1e-18  Score=133.45  Aligned_cols=98  Identities=21%  Similarity=0.368  Sum_probs=75.9

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc-----------CCcCCceeCCCchhhhHH--------HHhhHHHhh
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG-----------GHIQGALNIYTREHLVKE--------FIESKVHAQ   95 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~-----------gHIpGAvnip~~~~l~~~--------~~~~~~~~~   95 (258)
                      ||++++.+++++      ++++|||+|++.||.+           ||||||+|+|+ +.+...        .+...+. .
T Consensus         1 ~s~~~l~~~l~~------~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~-~~~~~~~~~~~~~~~~~~~~~-~   72 (118)
T cd01449           1 VTAEEVLANLDS------GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW-TSLLDEDGTFKSPEELRALFA-A   72 (118)
T ss_pred             CCHHHHHHhcCC------CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccCh-HHhcCCCCCcCCHHHHHHHHH-H
Confidence            578999998875      5689999999999987           99999999999 544321        1111111 1


Q ss_pred             ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013          96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus        96 ~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      ...  ++...||+||. ++.++.++++.|+.+          ||++|++|+||+.+|.
T Consensus        73 ~~~--~~~~~iv~yc~-~g~~s~~~~~~l~~~----------G~~~v~~l~GG~~~W~  117 (118)
T cd01449          73 LGI--TPDKPVIVYCG-SGVTACVLLLALELL----------GYKNVRLYDGSWSEWG  117 (118)
T ss_pred             cCC--CCCCCEEEECC-cHHHHHHHHHHHHHc----------CCCCeeeeCChHHHhc
Confidence            112  34445899999 688999999999999          9999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.75  E-value=9.5e-18  Score=131.70  Aligned_cols=104  Identities=20%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCc-------hhhccCCcCCceeCCCchhhhHHH------Hh--hHHHhhc-c
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYP-------YEYKGGHIQGALNIYTREHLVKEF------IE--SKVHAQS-N   97 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~-------~Ey~~gHIpGAvnip~~~~l~~~~------~~--~~~~~~~-~   97 (258)
                      .|++++|.+++.+      ++.+|||||++       .+|..||||||+|+|. .++....      +.  ..+.+.+ .
T Consensus         1 ~i~~~~l~~~l~~------~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (122)
T cd01448           1 LVSPDWLAEHLDD------PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDL-DEDLDDKSPGPHMLPSPEEFAELLGS   73 (122)
T ss_pred             CcCHHHHHHHhCC------CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcCh-hhccccCCCCCCCCCCHHHHHHHHHH
Confidence            3789999999986      56899999999       9999999999999998 5543210      00  0000000 0


Q ss_pred             ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          98 ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        98 ~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      ...++...|||||+.++.++..+++.|+..          ||++|++|+||+.+|..
T Consensus        74 ~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~----------G~~~v~~l~GG~~~W~~  120 (122)
T cd01448          74 LGISNDDTVVVYDDGGGFFAARAWWTLRYF----------GHENVRVLDGGLQAWKA  120 (122)
T ss_pred             cCCCCCCEEEEECCCCCccHHHHHHHHHHc----------CCCCEEEecCCHHHHHh
Confidence            112455668999994468999999999999          99999999999999986

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.74  E-value=1.5e-17  Score=132.72  Aligned_cols=115  Identities=26%  Similarity=0.438  Sum_probs=78.4

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh-h-----------HHHhhccccCC
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE-S-----------KVHAQSNATCD  101 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~-~-----------~~~~~~~~~~~  101 (258)
                      .|++++|.++++.+    .++++|||||.+.+|+.||||||+|+|. ..+...... .           .....+  ...
T Consensus         1 ~is~~~l~~~l~~~----~~~~~iiDvR~~~~~~~~hI~~ai~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~   73 (132)
T cd01446           1 TIDCAWLAALLREG----GERLLLLDCRPFLEYSSSHIRGAVNVCC-PTILRRRLQGGKILLQQLLSCPEDRDRL--RRG   73 (132)
T ss_pred             CcCHHHHHHHHhcC----CCCEEEEECCCHHHHhhCcccCcEecCh-HHHHHHhhcccchhhhhhcCCHHHHHHH--hcC
Confidence            48999999999852    1479999999999999999999999999 543221100 0           000011  111


Q ss_pred             CceEEEEecCCCCC-----cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccc
Q psy1013         102 KRRVLIFHCEYSAE-----RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC  160 (258)
Q Consensus       102 ~~~~vV~yc~~s~~-----rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~  160 (258)
                      +...||+||+.+..     -+.++++.++.+.+..     .++.+|++|+|||.+|.+.||++|
T Consensus        74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~v~~L~GG~~~w~~~~p~~~  132 (132)
T cd01446          74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKL-----QEGCSVYLLKGGFEQFSSEFPELC  132 (132)
T ss_pred             CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhc-----CCCceEEEEcchHHHHHhhCcccC
Confidence            34568999995542     2444555555552210     156789999999999999999988

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.74  E-value=7.7e-18  Score=125.43  Aligned_cols=92  Identities=34%  Similarity=0.585  Sum_probs=69.7

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhh---HH-HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhH
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES---KV-HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED  128 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~---~~-~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~  128 (258)
                      ++++|||||++.||+.||||||+|+|. ..+.......   .. .........+...||+||. ++.++..+++.|+.. 
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~-~g~~a~~~~~~l~~~-   79 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPL-SELLDRRGELDILEFEELLKRLGLDKDKPVVVYCR-SGNRSAKAAWLLREL-   79 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCH-HHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeC-CCcHHHHHHHHHHHc-
Confidence            679999999999999999999999999 5543221000   00 0000112244566899996 899999999999999 


Q ss_pred             HhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         129 RAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       129 r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                               ||++|++|+||+.+|...+
T Consensus        80 ---------G~~~v~~l~GG~~~w~~~~   98 (100)
T smart00450       80 ---------GFKNVYLLDGGYKEWSAAG   98 (100)
T ss_pred             ---------CCCceEEecCCHHHHHhcC
Confidence                     9999999999999999854

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.73  E-value=2.1e-17  Score=127.93  Aligned_cols=98  Identities=15%  Similarity=0.316  Sum_probs=77.0

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEY  112 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~  112 (258)
                      ..|++++|.+++.++    .++++|||+|++.||..||||||+|+|. ..+......       ..+  +...||+||..
T Consensus         8 ~~~s~~el~~~l~~~----~~~~~iiDvR~~~e~~~ghIpgA~~ip~-~~l~~~~~~-------~i~--~~~~vvvyc~~   73 (110)
T cd01521           8 FETDCWDVAIALKNG----KPDFVLVDVRSAEAYARGHVPGAINLPH-REICENATA-------KLD--KEKLFVVYCDG   73 (110)
T ss_pred             eecCHHHHHHHHHcC----CCCEEEEECCCHHHHhcCCCCCCEeCCH-HHhhhHhhh-------cCC--CCCeEEEEECC
Confidence            468999999999852    0358999999999999999999999999 554322111       122  34458899984


Q ss_pred             CC-CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         113 SA-ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       113 s~-~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      +. .++..+++.|+..          ||+ |++|+||+.+|...
T Consensus        74 g~~~~s~~~a~~l~~~----------G~~-v~~l~GG~~~W~~~  106 (110)
T cd01521          74 PGCNGATKAALKLAEL----------GFP-VKEMIGGLDWWKRE  106 (110)
T ss_pred             CCCchHHHHHHHHHHc----------CCe-EEEecCCHHHHHHC
Confidence            33 4899999999999          995 99999999999874

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.73  E-value=6.1e-18  Score=127.53  Aligned_cols=85  Identities=21%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN  132 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n  132 (258)
                      ++++|||+|++.||..||||||+|+|. .++....  ..... +.. ..+...||+||. ++.++..+++.|+..     
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~-~~~~~~~--~~~~~-~~~-~~~~~~ivv~c~-~g~~s~~~~~~l~~~-----   79 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPG-AALVLRS--QELQA-LEA-PGRATRYVLTCD-GSLLARFAAQELLAL-----   79 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCH-HHhcCCH--HHHHH-hhc-CCCCCCEEEEeC-ChHHHHHHHHHHHHc-----
Confidence            678999999999999999999999998 5442111  01100 111 133445889998 888999999999888     


Q ss_pred             cCCCCCCCCeEEecchHHHHH
Q psy1013         133 AYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       133 ~yp~lGy~~V~iL~GG~~~w~  153 (258)
                           ||++|++|+||+.+|.
T Consensus        80 -----G~~~v~~l~GG~~~W~   95 (96)
T cd01529          80 -----GGKPVALLDGGTSAWV   95 (96)
T ss_pred             -----CCCCEEEeCCCHHHhc
Confidence                 9999999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.73  E-value=4.3e-17  Score=134.98  Aligned_cols=109  Identities=17%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCch----hhccC---------CcCCceeCCCc--hhhhHH---HHh
Q psy1013          28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPY----EYKGG---------HIQGALNIYTR--EHLVKE---FIE   89 (258)
Q Consensus        28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~----Ey~~g---------HIpGAvnip~~--~~l~~~---~~~   89 (258)
                      .......||++|+.+++++      ++.+|||||++.    ||..|         |||||+|+|..  ..+...   .+.
T Consensus        31 ~~~~~~~vs~~el~~~l~~------~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~  104 (162)
T TIGR03865        31 TLKGARVLDTEAAQALLAR------GPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFR  104 (162)
T ss_pred             ccCCccccCHHHHHHHHhC------CCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHH
Confidence            4466889999999999987      568899999865    45544         99999999851  111110   011


Q ss_pred             hHHHhhccccCCCceEEEEecCCCCC-cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          90 SKVHAQSNATCDKRRVLIFHCEYSAE-RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        90 ~~~~~~~~~~~~~~~~vV~yc~~s~~-rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ..+...  ...+++..||+||. ++. +|..+++.|+.+          ||.+|++|+||+.+|...
T Consensus       105 ~~l~~~--~~~~~d~~IVvYC~-~G~~~S~~aa~~L~~~----------G~~~V~~l~GG~~aW~~a  158 (162)
T TIGR03865       105 RGLERA--TGGDKDRPLVFYCL-ADCWMSWNAAKRALAY----------GYSNVYWYPDGTDGWQAA  158 (162)
T ss_pred             HHHHHh--cCCCCCCEEEEEEC-CCCHHHHHHHHHHHhc----------CCcceEEecCCHHHHHHc
Confidence            111110  11135556899999 554 899999999999          999999999999999874

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>PLN02160 thiosulfate sulfurtransferase

Probab=99.72  E-value=1.6e-17  Score=133.82  Aligned_cols=105  Identities=20%  Similarity=0.327  Sum_probs=80.7

Q ss_pred             CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCc--eeCCCchhhh-------HHHHhhHHHhhccc
Q psy1013          28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGA--LNIYTREHLV-------KEFIESKVHAQSNA   98 (258)
Q Consensus        28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGA--vnip~~~~l~-------~~~~~~~~~~~~~~   98 (258)
                      +...++.|+++++.+++++      + .+|||||++.||..||||||  +|+|+ ..+.       ..+.... . . ..
T Consensus        10 ~~~~~~~i~~~e~~~~~~~------~-~~lIDVR~~~E~~~ghIpgA~~iniP~-~~~~~~~~l~~~~~~~~~-~-~-~~   78 (136)
T PLN02160         10 KAEEVVSVDVSQAKTLLQS------G-HQYLDVRTQDEFRRGHCEAAKIVNIPY-MLNTPQGRVKNQEFLEQV-S-S-LL   78 (136)
T ss_pred             CceeeeEeCHHHHHHHHhC------C-CEEEECCCHHHHhcCCCCCcceecccc-hhcCcccccCCHHHHHHH-H-h-cc
Confidence            3446788999999999975      2 47999999999999999999  89997 2211       1111111 0 0 11


Q ss_pred             cCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013          99 TCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus        99 ~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                        ++...||+||. +|.||..++..|...          ||.+|++|+||+.+|....
T Consensus        79 --~~~~~IivyC~-sG~RS~~Aa~~L~~~----------G~~~v~~l~GG~~~W~~~g  123 (136)
T PLN02160         79 --NPADDILVGCQ-SGARSLKATTELVAA----------GYKKVRNKGGGYLAWVDHS  123 (136)
T ss_pred             --CCCCcEEEECC-CcHHHHHHHHHHHHc----------CCCCeeecCCcHHHHhhCC
Confidence              23345899999 999999999999998          9999999999999999853

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.72  E-value=2.2e-17  Score=161.93  Aligned_cols=150  Identities=15%  Similarity=0.155  Sum_probs=102.6

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhH------------HHHhhHHHhhccccC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK------------EFIESKVHAQSNATC  100 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~------------~~~~~~~~~~~~~~~  100 (258)
                      ..||++||.+++++      ++++|||||++.+|..||||||+|+++ +....            ..+...+. .+.  -
T Consensus         9 ~lIs~~eL~~~l~~------~~vvIIDvR~~~eY~~GHIPGAv~i~~-~~~~~~~~~~~~~lp~~~~l~~~l~-~lG--I   78 (610)
T PRK09629          9 LVIEPNDLLERLDA------PELILVDLTSSARYEAGHIRGARFVDP-KRTQLGKPPAPGLLPDTADLEQLFG-ELG--H   78 (610)
T ss_pred             ceecHHHHHHHhcC------CCEEEEECCChHHHHhCCCCCcEEcCh-hHhhccCCCCCCCCCCHHHHHHHHH-HcC--C
Confidence            35999999999987      679999999999999999999999986 32110            01111111 122  2


Q ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCcccccccc
Q psy1013         101 DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSE  180 (258)
Q Consensus       101 ~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~~re~  180 (258)
                      +++..||+||..++.++.+++|.|+.+          ||++|++|+||+.+|..+......+ .......+|..+..++.
T Consensus        79 ~~d~~VVvYd~~g~~~A~R~~w~L~~~----------G~~~V~iLdGG~~aW~~ag~p~~~~-~~~~~~~~~~~~~~~~~  147 (610)
T PRK09629         79 NPDAVYVVYDDEGGGWAGRFIWLLDVI----------GHSGYHYLDGGVLAWEAQALPLSTD-VPPVAGGPVTLTLHDEP  147 (610)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHc----------CCCCEEEcCCCHHHHHHcCCccccC-CCCCCCcceeeccCCcc
Confidence            455668999996667899999999999          9999999999999999864333221 22223334544444433


Q ss_pred             ccccc-CCCCCCCCceeeechhhH
Q psy1013         181 DRAHN-AYPTLDYPEMYLLNGGYK  203 (258)
Q Consensus       181 dr~~n-~~p~l~ype~~~ld~g~~  203 (258)
                      ..+.+ ....+..+++.|||.--.
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~  171 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAP  171 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCc
Confidence            33322 444556677888888643

>PRK01415 hypothetical protein; Validated

Probab=99.72  E-value=3.5e-17  Score=143.52  Aligned_cols=105  Identities=26%  Similarity=0.403  Sum_probs=83.7

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      .-+.|+++++.+++++      ++++|||||+++||..||||||+|+|. ..+.+ +. .........  .+...||+||
T Consensus       110 ~g~~i~p~e~~~ll~~------~~~vvIDVRn~~E~~~Ghi~gAinip~-~~f~e-~~-~~~~~~~~~--~k~k~Iv~yC  178 (247)
T PRK01415        110 KGEYIEPKDWDEFITK------QDVIVIDTRNDYEVEVGTFKSAINPNT-KTFKQ-FP-AWVQQNQEL--LKGKKIAMVC  178 (247)
T ss_pred             CccccCHHHHHHHHhC------CCcEEEECCCHHHHhcCCcCCCCCCCh-HHHhh-hH-HHHhhhhhh--cCCCeEEEEC
Confidence            4578999999999987      689999999999999999999999998 55432 11 110001112  3444588999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ  157 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~  157 (258)
                      . +|.|+..++..|++.          ||++|+.|+||+.+|.++.+
T Consensus       179 t-gGiRs~kAa~~L~~~----------Gf~~Vy~L~GGi~~w~~~~~  214 (247)
T PRK01415        179 T-GGIRCEKSTSLLKSI----------GYDEVYHLKGGILQYLEDTQ  214 (247)
T ss_pred             C-CChHHHHHHHHHHHc----------CCCcEEEechHHHHHHHhcc
Confidence            8 999999999999999          99999999999999998543

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.72  E-value=1.5e-17  Score=134.25  Aligned_cols=104  Identities=23%  Similarity=0.282  Sum_probs=76.1

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCc--------hhhcc------------CCcCCceeCCCchhhhHH------HH
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYP--------YEYKG------------GHIQGALNIYTREHLVKE------FI   88 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~--------~Ey~~------------gHIpGAvnip~~~~l~~~------~~   88 (258)
                      ||++||.++++++.  ..++++|||+|..        .+|.+            ||||||+|+|+ ..+...      .+
T Consensus         1 vs~e~l~~~l~~~~--~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~-~~~~~~~~~~~~~~   77 (138)
T cd01445           1 KSTEQLAENLEAGK--VGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDF-EECLDEAGFEESME   77 (138)
T ss_pred             CCHHHHHHHhhccc--cCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCH-HHhhCcCCCCCCCC
Confidence            68999999998421  0167999999987        88998            99999999998 443210      01


Q ss_pred             hh--HHH---hhccccCCCceEEEEecCC--CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013          89 ES--KVH---AQSNATCDKRRVLIFHCEY--SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus        89 ~~--~~~---~~~~~~~~~~~~vV~yc~~--s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      +.  .+.   ..+.+  +....||+||+.  .+..+.++++.|+.+          ||++|++|+||+.+|.
T Consensus        78 p~~~~~~~~~~~~GI--~~~~~vVvY~~~~~~g~~A~r~~~~l~~~----------G~~~v~ildGG~~~W~  137 (138)
T cd01445          78 PSEAEFAAMFEAKGI--DLDKHLIATDGDDLGGFTACHIALAARLC----------GHPDVAILDGGFFEWF  137 (138)
T ss_pred             CCHHHHHHHHHHcCC--CCCCeEEEECCCCCcchHHHHHHHHHHHc----------CCCCeEEeCCCHHHhh
Confidence            00  111   11122  344568999973  367899999999998          9999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.72  E-value=2.3e-17  Score=123.72  Aligned_cols=82  Identities=21%  Similarity=0.267  Sum_probs=64.9

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCc--HHHHHHHHHHhHHh
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAER--GPTLSRYLRSEDRA  130 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~r--s~~~a~~L~~~~r~  130 (258)
                      ++++|||+|++.||..||||||+|+|. ..+......      . . .++...||+||. +|.+  +..+++.|+..   
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~-~~~~~~~~~------~-~-~~~~~~ivl~c~-~G~~~~s~~aa~~L~~~---   75 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPL-SRLELDAWV------R-I-PRRDTPIVVYGE-GGGEDLAPRAARRLSEL---   75 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCH-HHHHhhhHh------h-C-CCCCCeEEEEeC-CCCchHHHHHHHHHHHc---
Confidence            679999999999999999999999998 554322111      1 1 123445889999 6665  68889999999   


Q ss_pred             cccCCCCCCCCeEEecchHHHHHH
Q psy1013         131 HNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       131 ~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                             ||++|++|+||+.+|.+
T Consensus        76 -------G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          76 -------GYTDVALLEGGLQGWRA   92 (92)
T ss_pred             -------CccCEEEccCCHHHHcC
Confidence                   99999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.71  E-value=2.3e-17  Score=121.11  Aligned_cols=81  Identities=30%  Similarity=0.510  Sum_probs=67.0

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN  132 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n  132 (258)
                      ++++|||+|++.||+.||||||+|+|. ..+......        ....+...||+||. ++.++..+++.|+..     
T Consensus         9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~-~~~~~~~~~--------~~~~~~~~vv~~c~-~~~~a~~~~~~l~~~-----   73 (89)
T cd00158           9 EDAVLLDVREPEEYAAGHIPGAINIPL-SELEERAAL--------LELDKDKPIVVYCR-SGNRSARAAKLLRKA-----   73 (89)
T ss_pred             CCeEEEECCCHHHHhccccCCCEecch-HHHhhHHHh--------hccCCCCeEEEEeC-CCchHHHHHHHHHHh-----
Confidence            789999999999999999999999999 554433211        12234456889999 688999999999999     


Q ss_pred             cCCCCCCCCeEEecchHHHHH
Q psy1013         133 AYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus       133 ~yp~lGy~~V~iL~GG~~~w~  153 (258)
                           ||.+|++|+||+.+|.
T Consensus        74 -----G~~~v~~l~gG~~~w~   89 (89)
T cd00158          74 -----GGTNVYNLEGGMLAWK   89 (89)
T ss_pred             -----CcccEEEecCChhhcC
Confidence                 9999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>KOG1530|consensus

Probab=99.71  E-value=2.1e-17  Score=129.36  Aligned_cols=105  Identities=23%  Similarity=0.402  Sum_probs=83.4

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhH-------HHHhhHHHhhccccCC
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK-------EFIESKVHAQSNATCD  101 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~-------~~~~~~~~~~~~~~~~  101 (258)
                      .+....++.+++.++++.      ++.++||||+|+||..||||.+||||+ .....       +|...    -....+.
T Consensus        19 ~~~~~sv~~~qvk~L~~~------~~~~llDVRepeEfk~gh~~~siNiPy-~~~~~~~~l~~~eF~kq----vg~~kp~   87 (136)
T KOG1530|consen   19 ASNPQSVSVEQVKNLLQH------PDVVLLDVREPEEFKQGHIPASINIPY-MSRPGAGALKNPEFLKQ----VGSSKPP   87 (136)
T ss_pred             cCCcEEEEHHHHHHHhcC------CCEEEEeecCHHHhhccCCcceEeccc-cccccccccCCHHHHHH----hcccCCC
Confidence            355678999999999997      569999999999999999999999998 22211       22221    1111222


Q ss_pred             CceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         102 KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       102 ~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ...-|||+|. ||.|+-.|...|...          ||.+|.++.|||.+|...
T Consensus        88 ~d~eiIf~C~-SG~Rs~~A~~~l~s~----------Gyknv~ny~Gs~~~W~~k  130 (136)
T KOG1530|consen   88 HDKEIIFGCA-SGVRSLKATKILVSA----------GYKNVGNYPGSYLAWVDK  130 (136)
T ss_pred             CCCcEEEEec-cCcchhHHHHHHHHc----------CcccccccCccHHHHHHc
Confidence            3335899999 999999999999999          999999999999999874

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.71  E-value=3.8e-17  Score=146.47  Aligned_cols=154  Identities=18%  Similarity=0.220  Sum_probs=101.3

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecC----------chhhccCCcCCceeCCCchhhhHH------HHh--hHH--
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRY----------PYEYKGGHIQGALNIYTREHLVKE------FIE--SKV--   92 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~----------~~Ey~~gHIpGAvnip~~~~l~~~------~~~--~~~--   92 (258)
                      ..||++||.+++++      ++++|||||+          +.+|..||||||+|+|+ +.+...      ++.  ..+  
T Consensus         5 ~lvs~~~l~~~l~~------~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~-~~~~~~~~~~~~~~~~~~~~~~   77 (281)
T PRK11493          5 WFVAADWLAEHIDD------PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDI-EALSDHTSPLPHMMPRPETFAV   77 (281)
T ss_pred             cccCHHHHHHhcCC------CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCH-HHhcCCCCCCCCCCCCHHHHHH
Confidence            35999999999987      6799999996          67899999999999987 443210      000  001  


Q ss_pred             -HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCC
Q psy1013          93 -HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPG  171 (258)
Q Consensus        93 -~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~  171 (258)
                       ...+.+  ++...||+||..+...+.++++.|+..          ||++|++|+||+.+|.+....+.. +...+...+
T Consensus        78 ~~~~~Gi--~~d~~VVvyc~~~~~~a~~~~~~l~~~----------G~~~v~~l~GG~~~W~~~g~p~~~-~~~~~~~~~  144 (281)
T PRK11493         78 AMRELGV--NQDKHLVVYDEGNLFSAPRAWWMLRTF----------GVEKVSILAGGLAGWQRDDLLLEE-GAVELPEGE  144 (281)
T ss_pred             HHHHcCC--CCCCEEEEECCCCCchHHHHHHHHHHh----------cCCcEEEcCCCHHHHHHcCCCccC-CCCCCCCCc
Confidence             011122  345568999984444577888999998          999999999999999875332222 122333445


Q ss_pred             Cccccccccccccc-CCCCCCCCceeeechhhHHHH
Q psy1013         172 YKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQFY  206 (258)
Q Consensus       172 ~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~~~  206 (258)
                      |..+..++.....+ +...+..++..|||.--..-|
T Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~  180 (281)
T PRK11493        145 FNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARF  180 (281)
T ss_pred             ccccCCccceecHHHHHHhhcCCCcEEEeCCCccce
Confidence            55554444443332 333444556778888765554

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.70  E-value=9.3e-17  Score=146.58  Aligned_cols=152  Identities=13%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEec--------C-chhhccCCcCCceeCCCchhhhHH------------HHhhH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCR--------Y-PYEYKGGHIQGALNIYTREHLVKE------------FIESK   91 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR--------~-~~Ey~~gHIpGAvnip~~~~l~~~------------~~~~~   91 (258)
                      ..||++||.+++++      ++++|||||        + ..+|..||||||+|+++ ..+...            .+...
T Consensus        22 ~lvs~~~L~~~l~~------~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~-~~~~~~~~~~~~~lp~~~~~~~~   94 (320)
T PLN02723         22 PVVSVDWLHANLRE------PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDL-DGISDRTTDLPHMLPSEEAFAAA   94 (320)
T ss_pred             ceecHHHHHHHhcC------CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCH-HHhcCCCCCcCCCCCCHHHHHHH
Confidence            57999999999976      679999996        3 36899999999999997 443221            11111


Q ss_pred             HHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCc-------
Q psy1013          92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGY-------  164 (258)
Q Consensus        92 ~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~-------  164 (258)
                      + ..+.+  ++...||+||..+...+.+++|.|+.+          ||++|++|+||+.+|..+...+..+..       
T Consensus        95 l-~~~Gi--~~~~~VVvY~~~g~~~a~r~~~~L~~~----------G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~  161 (320)
T PLN02723         95 V-SALGI--ENKDGVVVYDGKGIFSAARVWWMFRVF----------GHEKVWVLDGGLPKWRASGYDVESSASGDAILKA  161 (320)
T ss_pred             H-HHcCC--CCCCEEEEEcCCCcchHHHHHHHHHHc----------CCCceEEcCCCHHHHHHcCCCcccCCCccccccc
Confidence            1 11122  344568999985556678999999999          999999999999999986433222100       


Q ss_pred             -------------ccCCCCCCccccccccccccc-CCCCCCCCceeeechhhHH
Q psy1013         165 -------------LPMADPGYKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQ  204 (258)
Q Consensus       165 -------------~~~~~~~~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~  204 (258)
                                   .......|..+...++..... +...+..+++.|||.--..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~  215 (320)
T PLN02723        162 SAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKA  215 (320)
T ss_pred             cccccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcc
Confidence                         011222344444444333332 4455556677888876443

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.70  E-value=1.2e-16  Score=145.44  Aligned_cols=107  Identities=22%  Similarity=0.404  Sum_probs=85.6

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ......|+++++.+++.+      ++++|||||+++||+.||||||+|+|+ ..+.. +.. .+...+..  .+...||+
T Consensus       108 ~~~~~~is~~el~~~l~~------~~~vlIDVR~~~E~~~GhI~GAi~ip~-~~~~~-~~~-~l~~~~~~--~kdk~Ivv  176 (314)
T PRK00142        108 ENVGTYLKPKEVNELLDD------PDVVFIDMRNDYEYEIGHFENAIEPDI-ETFRE-FPP-WVEENLDP--LKDKKVVM  176 (314)
T ss_pred             ccCCcccCHHHHHHHhcC------CCeEEEECCCHHHHhcCcCCCCEeCCH-HHhhh-hHH-HHHHhcCC--CCcCeEEE
Confidence            345678999999999986      679999999999999999999999999 65532 211 11111112  23445899


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ  157 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~  157 (258)
                      ||. +|.|+..++.+|+..          ||++|+.|+||+.+|....+
T Consensus       177 yC~-~G~Rs~~aa~~L~~~----------Gf~~V~~L~GGi~~w~~~~~  214 (314)
T PRK00142        177 YCT-GGIRCEKASAWMKHE----------GFKEVYQLEGGIITYGEDPE  214 (314)
T ss_pred             ECC-CCcHHHHHHHHHHHc----------CCCcEEEecchHHHHHHhhc
Confidence            999 999999999999998          99999999999999998654

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.68  E-value=1.8e-16  Score=128.96  Aligned_cols=94  Identities=17%  Similarity=0.246  Sum_probs=74.2

Q ss_pred             HHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHH
Q psy1013          40 LARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPT  119 (258)
Q Consensus        40 L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~  119 (258)
                      |.+++..+     .+++|||+|++.+|..||||||+|++. ..+...+..        ...  ...||+||. ++.++..
T Consensus         2 l~~~l~~~-----~~~~ivDvR~~~e~~~gHIpgAi~~~~-~~l~~~l~~--------l~~--~~~vVv~c~-~g~~a~~   64 (145)
T cd01535           2 LAAWLGEG-----GQTAVVDVTASANYVKRHIPGAWWVLR-AQLAQALEK--------LPA--AERYVLTCG-SSLLARF   64 (145)
T ss_pred             hHHHHhCC-----CCeEEEECCCHHHHHcCCCCCceeCCH-HHHHHHHHh--------cCC--CCCEEEEeC-CChHHHH
Confidence            56667654     579999999999999999999999998 555433221        122  344888998 6889999


Q ss_pred             HHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccc
Q psy1013         120 LSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC  160 (258)
Q Consensus       120 ~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~  160 (258)
                      +++.|+..          ||.+|++|+||+.+|......++
T Consensus        65 aa~~L~~~----------G~~~v~~L~GG~~aW~~~g~pl~   95 (145)
T cd01535          65 AAADLAAL----------TVKPVFVLEGGTAAWIAAGLPVE   95 (145)
T ss_pred             HHHHHHHc----------CCcCeEEecCcHHHHHHCCCCcc
Confidence            99999999          99999999999999999644433

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.67  E-value=4.4e-16  Score=137.90  Aligned_cols=110  Identities=17%  Similarity=0.350  Sum_probs=82.9

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      ....|+++++.+++++..++..++.+|||||+++||+.||||||+|+|. +++.. +. ..+.......  +...||+||
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl-~~f~~-~~-~~l~~~~~~~--kdk~IvvyC  182 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRI-DKFTE-FP-EALAAHRADL--AGKTVVSFC  182 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCCh-hHhhh-hH-HHHHhhhhhc--CCCeEEEEC
Confidence            4578999999999876311111358999999999999999999999999 66532 11 1111010011  334588999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      . +|.|+..++..|+..          ||++|+.|+||+.+|.++.
T Consensus       183 ~-~G~Rs~~Aa~~L~~~----------Gf~~V~~L~GGi~~w~~~~  217 (257)
T PRK05320        183 T-GGIRCEKAAIHMQEV----------GIDNVYQLEGGILKYFEEV  217 (257)
T ss_pred             C-CCHHHHHHHHHHHHc----------CCcceEEeccCHHHHHHhC
Confidence            9 999999999999999          9999999999999999853

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.66  E-value=2.3e-16  Score=140.87  Aligned_cols=162  Identities=17%  Similarity=0.138  Sum_probs=113.6

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCc--hhhccCCcCCceeCCCchhhhHH------HHhhHHH-----hhc
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYP--YEYKGGHIQGALNIYTREHLVKE------FIESKVH-----AQS   96 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~--~Ey~~gHIpGAvnip~~~~l~~~------~~~~~~~-----~~~   96 (258)
                      .....||++||.++|.+. .-...+..|++++..  .+|..||||||+++++ +.....      +++....     ..+
T Consensus         8 ~~~~lVs~~wl~~~l~~~-~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~-~~~~~~~~~~~~~lp~~e~fa~~~~~~   85 (285)
T COG2897           8 SSEFLVSPDWLAENLDDP-AVVIVDARIILPDPDDAEEYLEGHIPGAVFFDW-EADLSDPVPLPHMLPSPEQFAKLLGEL   85 (285)
T ss_pred             CcceEEcHHHHHhhcccc-ccccCceEEEeCCcchHHHHHhccCCCCEecCH-HHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence            345579999999999862 001135666666665  7899999999999998 443211      1111110     112


Q ss_pred             cccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCcccc
Q psy1013          97 NATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRY  176 (258)
Q Consensus        97 ~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~  176 (258)
                      .+  +++.+||+|++.++..+++++|.|+.+          |+++|+||+||+.+|.++.-.+.. +........|.+++
T Consensus        86 GI--~~d~tVVvYdd~~~~~A~ra~W~l~~~----------Gh~~V~iLdGG~~~W~~~g~p~~~-~~~~~~~~~f~~~~  152 (285)
T COG2897          86 GI--RNDDTVVVYDDGGGFFAARAWWLLRYL----------GHENVRILDGGLPAWKAAGLPLET-EPPEPPPTTFSAKY  152 (285)
T ss_pred             CC--CCCCEEEEECCCCCeehHHHHHHHHHc----------CCCceEEecCCHHHHHHcCCCccC-CCCCCCCccccccC
Confidence            22  456679999998888999999999999          999999999999999997544443 23444555677777


Q ss_pred             ccccccccc-CCCCCCCCceeeechhhHHHH
Q psy1013         177 LRSEDRAHN-AYPTLDYPEMYLLNGGYKQFY  206 (258)
Q Consensus       177 ~re~dr~~n-~~p~l~ype~~~ld~g~~~~~  206 (258)
                      ..+.....+ +.-.++.+.+.|+|+--..-|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf  183 (285)
T COG2897         153 NVKAVVDATLVADALEVPAVLLIDARSPERF  183 (285)
T ss_pred             CccccCCHHHHHHHhcCCCeEEEecCCHHHh
Confidence            666666644 666677788889998765443

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.65  E-value=5.7e-16  Score=118.57  Aligned_cols=81  Identities=26%  Similarity=0.367  Sum_probs=65.7

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN  132 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n  132 (258)
                      ....+||+|++.||..||||||+|+|. .++.... ..       ...++...||+||. +|.+|..++..|+..     
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~-~~l~~~l-~~-------~~~~~~~~vvlyC~-~G~rS~~aa~~L~~~-----   81 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPL-KEIKEHI-AT-------AVPDKNDTVKLYCN-AGRQSGMAKDILLDM-----   81 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCH-HHHHHHH-HH-------hCCCCCCeEEEEeC-CCHHHHHHHHHHHHc-----
Confidence            456799999999999999999999999 6554322 11       11234456889999 889999999999999     


Q ss_pred             cCCCCCCCCeEEecchHHHHHH
Q psy1013         133 AYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       133 ~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                           ||++|+++ ||+.+|..
T Consensus        82 -----G~~~v~~~-GG~~~~~~   97 (101)
T TIGR02981        82 -----GYTHAENA-GGIKDIAM   97 (101)
T ss_pred             -----CCCeEEec-CCHHHhhh
Confidence                 99999986 99999975

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.64  E-value=7.9e-16  Score=143.37  Aligned_cols=97  Identities=26%  Similarity=0.394  Sum_probs=79.9

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ++.|+++++.+++++       +.+|||+|++.||..||||||+|+|. ..+... ...     ..  .++...||+||.
T Consensus         2 v~~is~~el~~~l~~-------~~~ivDvR~~~e~~~ghIpgAi~ip~-~~l~~~-~~~-----~~--~~~~~~IvvyC~   65 (376)
T PRK08762          2 IREISPAEARARAAQ-------GAVLIDVREAHERASGQAEGALRIPR-GFLELR-IET-----HL--PDRDREIVLICA   65 (376)
T ss_pred             CceeCHHHHHHHHhC-------CCEEEECCCHHHHhCCcCCCCEECCH-HHHHHH-Hhh-----hc--CCCCCeEEEEcC
Confidence            567999999999974       47899999999999999999999999 554322 211     11  134455899999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       ++.+|..+++.|+..          ||++|++|+||+.+|...
T Consensus        66 -~G~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~   98 (376)
T PRK08762         66 -SGTRSAHAAATLREL----------GYTRVASVAGGFSAWKDA   98 (376)
T ss_pred             -CCcHHHHHHHHHHHc----------CCCceEeecCcHHHHHhc
Confidence             888999999999999          999999999999999875

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.63  E-value=8e-16  Score=118.34  Aligned_cols=81  Identities=26%  Similarity=0.383  Sum_probs=64.8

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN  132 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n  132 (258)
                      .+-+|||+|++.||..||||||+|+|. .++... +.     .  ...++...||+||. ++.+|..++..|...     
T Consensus        19 ~~~~lIDvR~~~ef~~ghIpGAiniP~-~~l~~~-l~-----~--l~~~~~~~IVlyC~-~G~rS~~aa~~L~~~-----   83 (104)
T PRK10287         19 AAEHWIDVRVPEQYQQEHVQGAINIPL-KEVKER-IA-----T--AVPDKNDTVKLYCN-AGRQSGQAKEILSEM-----   83 (104)
T ss_pred             CCCEEEECCCHHHHhcCCCCccEECCH-HHHHHH-HH-----h--cCCCCCCeEEEEeC-CChHHHHHHHHHHHc-----
Confidence            345699999999999999999999999 655432 21     1  12234455899998 889999999999988     


Q ss_pred             cCCCCCCCCeEEecchHHHHHH
Q psy1013         133 AYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       133 ~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                           ||++|++ .||+.+|.-
T Consensus        84 -----G~~~v~~-~GG~~~~~~   99 (104)
T PRK10287         84 -----GYTHAEN-AGGLKDIAM   99 (104)
T ss_pred             -----CCCeEEe-cCCHHHHhh
Confidence                 9999987 699999964

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.62  E-value=2e-15  Score=141.34  Aligned_cols=99  Identities=22%  Similarity=0.371  Sum_probs=81.9

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH-HHhhHHHhhccccCCCceEEEEe
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE-FIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~-~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ....|+++++.++++++     .+++|||+|++.||..||||||+|+|. ..+... ...       ..+  +...||+|
T Consensus       285 ~~~~Is~~el~~~l~~~-----~~~~lIDvR~~~ef~~ghIpGAinip~-~~l~~~~~~~-------~l~--~d~~iVvy  349 (392)
T PRK07878        285 AGSTITPRELKEWLDSG-----KKIALIDVREPVEWDIVHIPGAQLIPK-SEILSGEALA-------KLP--QDRTIVLY  349 (392)
T ss_pred             CCCccCHHHHHHHHhCC-----CCeEEEECCCHHHHhcCCCCCCEEcCh-HHhcchhHHh-------hCC--CCCcEEEE
Confidence            44679999999999864     578999999999999999999999999 555331 111       122  33458899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      |. ++.||..+++.|++.          ||++|++|+||+.+|...
T Consensus       350 C~-~G~rS~~aa~~L~~~----------G~~~V~~L~GG~~~W~~~  384 (392)
T PRK07878        350 CK-TGVRSAEALAALKKA----------GFSDAVHLQGGVVAWAKQ  384 (392)
T ss_pred             cC-CChHHHHHHHHHHHc----------CCCcEEEecCcHHHHHHh
Confidence            99 889999999999999          999999999999999874

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.58  E-value=9.2e-15  Score=134.46  Aligned_cols=102  Identities=21%  Similarity=0.306  Sum_probs=73.4

Q ss_pred             CHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHH-------------------------Hhh
Q psy1013          36 SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF-------------------------IES   90 (258)
Q Consensus        36 s~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~-------------------------~~~   90 (258)
                      +..++.+++.       ++.+|||||+|.||..||||||+|+|.. +..++.                         +..
T Consensus         4 ~~~~~~~~~~-------~~~~lIDVRsp~Ef~~ghIpgAiniPl~-~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~   75 (345)
T PRK11784          4 DAQDFRALFL-------NDTPLIDVRSPIEFAEGHIPGAINLPLL-NDEERAEVGTCYKQQGQFAAIALGHALVAGNIAA   75 (345)
T ss_pred             cHHHHHHHHh-------CCCEEEECCCHHHHhcCCCCCeeeCCCC-ChhHHHhhchhhcccCHHHHHHhhhhhcchhHHH
Confidence            4566777665       4689999999999999999999999993 321110                         000


Q ss_pred             HHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013          91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      .....+....++...||+||..+|.||..++++|+..          || +|++|+|||++|....
T Consensus        76 ~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~----------G~-~v~~L~GG~~awr~~~  130 (345)
T PRK11784         76 HREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEA----------GI-DVPRLEGGYKAYRRFV  130 (345)
T ss_pred             HHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHc----------CC-CcEEEcCCHHHHHHhh
Confidence            0000011111244558999976889999999999999          99 6999999999998753

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.57  E-value=7.8e-15  Score=112.27  Aligned_cols=83  Identities=25%  Similarity=0.435  Sum_probs=70.2

Q ss_pred             CCeEEEEecCchhhccCCcCC-ceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQG-ALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAH  131 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpG-Avnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~  131 (258)
                      +..+|||||++.||+.+|||| |+|+|. .++......        ...++...+|+||. +|.||..++..|+..    
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~-~~~~~~~~~--------~~~~~~~~ivv~C~-~G~rS~~aa~~L~~~----   84 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPL-SELKAAENL--------LELPDDDPIVVYCA-SGVRSAAAAAALKLA----   84 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeec-ccchhhhcc--------cccCCCCeEEEEeC-CCCChHHHHHHHHHc----
Confidence            689999999999999999999 999999 665443221        00234556889999 999999999999999    


Q ss_pred             ccCCCCCCCCeEEecchHHHHHHh
Q psy1013         132 NAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       132 n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                            ||.+++.|.||+.+|...
T Consensus        85 ------G~~~~~~l~gG~~~w~~~  102 (110)
T COG0607          85 ------GFTNVYNLDGGIDAWKGA  102 (110)
T ss_pred             ------CCccccccCCcHHHHHhc
Confidence                  999999999999999884

>PRK07411 hypothetical protein; Validated

Probab=99.57  E-value=1.2e-14  Score=136.08  Aligned_cols=104  Identities=20%  Similarity=0.333  Sum_probs=80.3

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.|+++++.++++.+    .++.+|||+|++.||..||||||+|+|+ .++........+.   ...  +...||+|
T Consensus       279 ~~~~~Is~~el~~~l~~~----~~~~vlIDVR~~~E~~~ghIpGAiniP~-~~l~~~~~~~~l~---~l~--~d~~IVvy  348 (390)
T PRK07411        279 AEIPEMTVTELKALLDSG----ADDFVLIDVRNPNEYEIARIPGSVLVPL-PDIENGPGVEKVK---ELL--NGHRLIAH  348 (390)
T ss_pred             cccCccCHHHHHHHHhCC----CCCeEEEECCCHHHhccCcCCCCEEccH-HHhhcccchHHHh---hcC--CCCeEEEE
Confidence            456789999999999763    0268999999999999999999999999 5553311000100   112  33458999


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      |. +|.||..+++.|+..          ||++ +.|+||+.+|..+
T Consensus       349 C~-~G~RS~~aa~~L~~~----------G~~~-~~l~GG~~~W~~~  382 (390)
T PRK07411        349 CK-MGGRSAKALGILKEA----------GIEG-TNVKGGITAWSRE  382 (390)
T ss_pred             CC-CCHHHHHHHHHHHHc----------CCCe-EEecchHHHHHHh
Confidence            98 899999999999999          9974 6899999999874

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.56  E-value=6.7e-15  Score=134.36  Aligned_cols=101  Identities=15%  Similarity=0.286  Sum_probs=76.8

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhh-----------ccCCcCCceeCCCchhhhHH---H-----HhhHHHh
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-----------KGGHIQGALNIYTREHLVKE---F-----IESKVHA   94 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-----------~~gHIpGAvnip~~~~l~~~---~-----~~~~~~~   94 (258)
                      .++.+++.+.+.+      ++++|||+|++.||           ..||||||+|+|+ ..+...   +     +...+ .
T Consensus       191 ~~~~~~v~~~~~~------~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~-~~~~~~~~~~~~~~el~~~~-~  262 (320)
T PLN02723        191 VWTLEQVKKNIED------KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPF-PQMLDSSQTLLPAEELKKRF-E  262 (320)
T ss_pred             eecHHHHHHhhcC------CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCH-HHhcCCCCCCCCHHHHHHHH-H
Confidence            4789999998876      56889999999888           4699999999998 444211   1     11111 1


Q ss_pred             hccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          95 QSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        95 ~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ...+.  +...||+||+ +|.++..+++.|+.+          ||++|++++||+.+|...
T Consensus       263 ~~gi~--~~~~iv~yC~-sG~~A~~~~~~L~~~----------G~~~v~~YdGs~~eW~~~  310 (320)
T PLN02723        263 QEGIS--LDSPIVASCG-TGVTACILALGLHRL----------GKTDVPVYDGSWTEWGAL  310 (320)
T ss_pred             hcCCC--CCCCEEEECC-cHHHHHHHHHHHHHc----------CCCCeeEeCCCHHHHhcC
Confidence            11233  3344889999 789999999999988          999999999999999864

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.55  E-value=1.2e-14  Score=131.84  Aligned_cols=91  Identities=25%  Similarity=0.352  Sum_probs=65.5

Q ss_pred             CeEEEEecCchhhccCCcCCceeCCCchhhhHH---------------------HHhhHHHh---hccccCCCceEEEEe
Q psy1013          54 KYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE---------------------FIESKVHA---QSNATCDKRRVLIFH  109 (258)
Q Consensus        54 ~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~---------------------~~~~~~~~---~~~~~~~~~~~vV~y  109 (258)
                      +.+|||||+|.||..||||||+|+|. .+..++                     +....+..   .+....+++..||+|
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl-~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvy   80 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPL-LNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLY   80 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEeccc-ccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEE
Confidence            35899999999999999999999999 322110                     00001110   111112223238899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      |..+|.||..++++|+.+          || +|++|+||+.+|....
T Consensus        81 C~~gG~RS~~aa~~L~~~----------G~-~v~~L~GG~~aw~~~~  116 (311)
T TIGR03167        81 CWRGGMRSGSLAWLLAQI----------GF-RVPRLEGGYKAYRRFV  116 (311)
T ss_pred             ECCCChHHHHHHHHHHHc----------CC-CEEEecChHHHHHHhh
Confidence            976889999999999999          99 6999999999998864

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.53  E-value=1.9e-14  Score=133.18  Aligned_cols=96  Identities=20%  Similarity=0.265  Sum_probs=75.9

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      ....++++++.++.        ++.+|||+|++.||..||||||+|+|+ .++......      ...  ++...||+||
T Consensus       259 ~~~~i~~~~~~~~~--------~~~~IIDVR~~~ef~~ghIpgAinip~-~~l~~~~~~------~~~--~~~~~IvvyC  321 (355)
T PRK05597        259 FGEVLDVPRVSALP--------DGVTLIDVREPSEFAAYSIPGAHNVPL-SAIREGANP------PSV--SAGDEVVVYC  321 (355)
T ss_pred             cccccCHHHHHhcc--------CCCEEEECCCHHHHccCcCCCCEEeCH-HHhhhcccc------ccC--CCCCeEEEEc
Confidence            34578888887543        347899999999999999999999999 655433211      111  2334588999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      . ++.++..+++.|+..          ||++|++|+||+.+|.+
T Consensus       322 ~-~G~rS~~Aa~~L~~~----------G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        322 A-AGVRSAQAVAILERA----------GYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             C-CCHHHHHHHHHHHHc----------CCCCEEEecCcHHHHhh
Confidence            8 789999999999999          99999999999999975

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.51  E-value=4.6e-14  Score=138.61  Aligned_cols=102  Identities=22%  Similarity=0.339  Sum_probs=78.3

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc--------cCCcCCceeCCCchhhhH--------HHHhhHHHhhc
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK--------GGHIQGALNIYTREHLVK--------EFIESKVHAQS   96 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~--------~gHIpGAvnip~~~~l~~--------~~~~~~~~~~~   96 (258)
                      ..++.+++.+.+++      ++++|||+|++.||.        .||||||+|+|+ ..+..        +.+...+ ...
T Consensus       147 ~~v~~e~v~~~l~~------~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~-~~~~~~~~~lk~~~el~~~~-~~~  218 (610)
T PRK09629        147 PTATREYLQSRLGA------ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEW-TAGMDKARNLRIRQDMPEIL-RDL  218 (610)
T ss_pred             ccccHHHHHHhhCC------CCcEEEECCCccccCCcccccccCCCCCCCeecCH-HHhcCCCCCCCCHHHHHHHH-HHc
Confidence            36899999999876      678999999999995        699999999998 43321        1111111 112


Q ss_pred             cccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          97 NATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        97 ~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      .+.  +...||+||+ ++.+|..+++.|+.+          ||++|++++||+.+|...
T Consensus       219 Gi~--~~~~VVvYC~-sG~rAa~~~~~L~~l----------G~~~V~~YdGsw~eW~~~  264 (610)
T PRK09629        219 GIT--PDKEVITHCQ-THHRSGFTYLVAKAL----------GYPRVKAYAGSWGEWGNH  264 (610)
T ss_pred             CCC--CCCCEEEECC-CChHHHHHHHHHHHc----------CCCCcEEeCCCHHHHhCC
Confidence            233  3344899999 889999999999988          999999999999999874

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.50  E-value=9.4e-14  Score=124.15  Aligned_cols=106  Identities=25%  Similarity=0.398  Sum_probs=81.3

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc----------CCcCCceeCCCchhhhHH--HHh-----hHH
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------GHIQGALNIYTREHLVKE--FIE-----SKV   92 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~----------gHIpGAvnip~~~~l~~~--~~~-----~~~   92 (258)
                      +....++.+.++..++.      ...+|||+|++.+|.+          ||||||+|+|+ .++...  ++.     ..+
T Consensus       153 ~~~~~~~~~~~~~~~~~------~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw-~~~~~~~~~~~~~~~~~~l  225 (285)
T COG2897         153 NVKAVVDATLVADALEV------PAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPW-TDLVDDGGLFKSPEEIARL  225 (285)
T ss_pred             CccccCCHHHHHHHhcC------CCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCH-HHHhcCCCccCcHHHHHHH
Confidence            34456777888888877      6788999999999999          99999999999 665441  111     111


Q ss_pred             HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          93 HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        93 ~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      .....+..+++  ||+||+ +|.+|......|+.+          |++++.+++|++.+|-+.
T Consensus       226 ~~~~gi~~~~~--vI~yCg-sG~~As~~~~al~~l----------g~~~~~lYdGSWsEWg~~  275 (285)
T COG2897         226 YADAGIDPDKE--VIVYCG-SGVRASVTWLALAEL----------GGPNNRLYDGSWSEWGSD  275 (285)
T ss_pred             HHhcCCCCCCC--EEEEcC-CchHHHHHHHHHHHh----------CCCCcccccChHHHhhcC
Confidence            11223444444  789999 999999999999999          888889999999999873

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.48  E-value=6.1e-14  Score=125.75  Aligned_cols=100  Identities=25%  Similarity=0.385  Sum_probs=72.7

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhHH--HHh-hHHHh---hcc
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVKE--FIE-SKVHA---QSN   97 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~~--~~~-~~~~~---~~~   97 (258)
                      ++.+++...+.+      ++++|||+|++.||.           .||||||+|+|+ ..+...  +.. ..+..   ...
T Consensus       155 ~~~~~v~~~~~~------~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~-~~~~~~~~~~~~~~l~~~~~~~g  227 (281)
T PRK11493        155 VRLTDVLLASHE------KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPW-TELVREGELKTTDELDAIFFGRG  227 (281)
T ss_pred             ecHHHHHHhhcC------CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCH-HHhcCCCCcCCHHHHHHHHHhcC
Confidence            455666655554      568999999999996           599999999998 554321  100 11110   112


Q ss_pred             ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          98 ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        98 ~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      +..+  ..||+||+ +|.+|..++..|+.+          ||++|++++||+.+|..
T Consensus       228 ~~~~--~~ii~yC~-~G~~A~~~~~~l~~~----------G~~~v~~y~Gs~~eW~~  271 (281)
T PRK11493        228 VSFD--RPIIASCG-SGVTAAVVVLALATL----------DVPNVKLYDGAWSEWGA  271 (281)
T ss_pred             CCCC--CCEEEECC-cHHHHHHHHHHHHHc----------CCCCceeeCCCHHHHcc
Confidence            2233  34888999 899999999999988          99999999999999986

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.42  E-value=3e-13  Score=125.75  Aligned_cols=93  Identities=14%  Similarity=0.169  Sum_probs=73.9

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcC---CceeCCCchhhhHHH--HhhHHHhhccccCCCceEEE
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQ---GALNIYTREHLVKEF--IESKVHAQSNATCDKRRVLI  107 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIp---GAvnip~~~~l~~~~--~~~~~~~~~~~~~~~~~~vV  107 (258)
                      ..|+++++.+++++      ++.+|||||++.||..||||   ||+|+|. +++....  ..     .+... ++. .||
T Consensus       271 ~~~~~~el~~~l~~------~~~~lIDVR~~~E~~~ghI~~~~gAinIPl-~~l~~~~~~~~-----~l~~~-~~~-~Iv  336 (370)
T PRK05600        271 ARTDTTSLIDATLN------GSATLLDVREPHEVLLKDLPEGGASLKLPL-SAITDDADILH-----ALSPI-DGD-NVV  336 (370)
T ss_pred             cccCHHHHHHHHhc------CCeEEEECCCHHHhhhccCCCCCccEeCcH-HHhhcchhhhh-----hcccc-CCC-cEE
Confidence            36899999999987      45789999999999999998   6999999 6664221  11     01111 222 589


Q ss_pred             EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCC-eEEecchHH
Q psy1013         108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPE-MYLLNGGYK  150 (258)
Q Consensus       108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~-V~iL~GG~~  150 (258)
                      +||. +|.||..++..|+..          ||.+ |++|+||+.
T Consensus       337 v~C~-sG~RS~~Aa~~L~~~----------G~~~~v~~l~GG~~  369 (370)
T PRK05600        337 VYCA-SGIRSADFIEKYSHL----------GHELTLHNLPGGVN  369 (370)
T ss_pred             EECC-CChhHHHHHHHHHHc----------CCCCceEEeccccC
Confidence            9999 999999999999999          9986 999999985

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.26  E-value=1.2e-11  Score=109.72  Aligned_cols=102  Identities=25%  Similarity=0.441  Sum_probs=83.9

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      =.+|+|+++.+++.+      +++++||+|..+||+-||..|||+.+. .++. +|. ....+......++  .||.||-
T Consensus       112 G~yl~p~~wn~~l~D------~~~vviDtRN~YE~~iG~F~gAv~p~~-~tFr-efP-~~v~~~~~~~~~K--kVvmyCT  180 (308)
T COG1054         112 GTYLSPKDWNELLSD------PDVVVIDTRNDYEVAIGHFEGAVEPDI-ETFR-EFP-AWVEENLDLLKDK--KVVMYCT  180 (308)
T ss_pred             cCccCHHHHHHHhcC------CCeEEEEcCcceeEeeeeecCccCCCh-hhhh-hhH-HHHHHHHHhccCC--cEEEEcC
Confidence            468999999999998      789999999999999999999999999 6653 332 2222222223344  4889999


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       +|.|...+..+|+..          ||++||-|+||+-.+.++
T Consensus       181 -GGIRCEKas~~m~~~----------GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         181 -GGIRCEKASAWMKEN----------GFKEVYHLEGGILKYLED  213 (308)
T ss_pred             -CceeehhhHHHHHHh----------cchhhhcccchHHHHhhh
Confidence             999999999999999          999999999999999875

>KOG1529|consensus

Probab=99.12  E-value=3.9e-10  Score=99.66  Aligned_cols=155  Identities=14%  Similarity=0.165  Sum_probs=101.7

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecC---------chhhccCCcCCceeCCCchhhh------HHHHhhHHH--hh
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRY---------PYEYKGGHIQGALNIYTREHLV------KEFIESKVH--AQ   95 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~---------~~Ey~~gHIpGAvnip~~~~l~------~~~~~~~~~--~~   95 (258)
                      ..++++|+.+++.+      ..++|||+.-         ..||...|||||+++.. +...      ...++....  ..
T Consensus         5 ~iv~~~~v~~~~~~------~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdl-d~~~~~s~~~~~~lp~~e~Fa~y   77 (286)
T KOG1529|consen    5 SIVSVKWVMENLGN------HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDL-DIISYPSSPYRHMLPTAEHFAEY   77 (286)
T ss_pred             cccChHHHHHhCcC------CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeec-cccccCCCcccccCccHHHHHHH
Confidence            35889999999987      6799999972         56788999999999987 4431      111111111  00


Q ss_pred             -ccccCCCceEEEEecC--CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCccc-C-CCC
Q psy1013          96 -SNATCDKRRVLIFHCE--YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLP-M-ADP  170 (258)
Q Consensus        96 -~~~~~~~~~~vV~yc~--~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~-~-~~~  170 (258)
                       ..+.-++...+|+|+.  .+...|++++|+++.+          ||..|.+|+||+.+|++...+...+ .+. + ..-
T Consensus        78 ~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~f----------Gh~~VslL~GG~~~Wk~~g~~~~s~-~~~~p~~~~  146 (286)
T KOG1529|consen   78 ASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVF----------GHTKVSLLNGGFRAWKAAGGPVDSS-KVETPYSPI  146 (286)
T ss_pred             HHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHh----------CccEEEEecCcHHHHHHcCCccccc-cccCCCCCc
Confidence             0122245567899987  4556799999999999          9999999999999999864333321 221 1 233


Q ss_pred             CCcccccccccccccC--CCCCCCCceeeechh-hHHH
Q psy1013         171 GYKSRYLRSEDRAHNA--YPTLDYPEMYLLNGG-YKQF  205 (258)
Q Consensus       171 ~~~ak~~re~dr~~n~--~p~l~ype~~~ld~g-~~~~  205 (258)
                      .+.+.+..++......  +..+...++..+|+- +-+|
T Consensus       147 ~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF  184 (286)
T KOG1529|consen  147 VFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRF  184 (286)
T ss_pred             cchhhcchHHHHHHhhccccccccccceeeeccccccc
Confidence            4445666655555432  222455677778776 4455

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=98.97  E-value=1.2e-09  Score=105.17  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=59.1

Q ss_pred             CCeEEEEecCchhhccCCcCC----ceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhH
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQG----ALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED  128 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpG----Avnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~  128 (258)
                      ++.+|||+|++.||+.|||||    |+|+|. .++...+..        .+.+  ..+|+||. +|.||..+|..|+.. 
T Consensus       406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~-~~l~~~~~~--------l~~~--~~iivyC~-~G~rS~~aa~~L~~~-  472 (482)
T PRK01269        406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF-YKLSTQFGD--------LDQS--KTYLLYCD-RGVMSRLQALYLREQ-  472 (482)
T ss_pred             CCCEEEECCCHHHHhcCCCCCCCceEEECCH-HHHHHHHhh--------cCCC--CeEEEECC-CCHHHHHHHHHHHHc-
Confidence            568899999999999999999    999999 666443211        2233  35899999 899999999999999 


Q ss_pred             HhcccCCCCCCCCeEEec
Q psy1013         129 RAHNAYPTLDYPEMYLLN  146 (258)
Q Consensus       129 r~~n~yp~lGy~~V~iL~  146 (258)
                               ||.+|+++.
T Consensus       473 ---------G~~nv~~y~  481 (482)
T PRK01269        473 ---------GFSNVKVYR  481 (482)
T ss_pred             ---------CCccEEecC
Confidence                     999998875

>KOG2017|consensus

Probab=98.77  E-value=1.4e-08  Score=91.89  Aligned_cols=104  Identities=22%  Similarity=0.254  Sum_probs=77.3

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      -..||..++++++++.     +..++||+|++-||+..|+|+|+|||. .++..... +... .......++  |++.|.
T Consensus       316 ~~Rvsv~d~k~il~~~-----~~h~llDvRp~~~~eI~~lP~avNIPL-~~l~~~~~-~~~~-~~~~~~~~~--I~ViCr  385 (427)
T KOG2017|consen  316 DERVSVTDYKRILDSG-----AKHLLLDVRPSHEYEICRLPEAVNIPL-KELRSRSG-KKLQ-GDLNTESKD--IFVICR  385 (427)
T ss_pred             hhcccHHHHHHHHhcC-----CCeEEEeccCcceEEEEecccccccch-hhhhhhhh-hhhc-ccccccCCC--EEEEeC
Confidence            4579999999999986     789999999999999999999999999 55544322 1111 001112333  566677


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       .|..|.++++.|++..         +.-.|.-+-||+.+|...
T Consensus       386 -rGNdSQ~Av~~Lre~~---------~~~~vrDvigGl~~w~~~  419 (427)
T KOG2017|consen  386 -RGNDSQRAVRILREKF---------PDSSVRDVIGGLKAWAAK  419 (427)
T ss_pred             -CCCchHHHHHHHHhhC---------CchhhhhhhhHHHHHHHh
Confidence             7888999999999772         333566788999999874

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.44  E-value=6.4e-08  Score=86.66  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=10.9

Q ss_pred             ccccCCcccCCCCCCcccccccccc
Q psy1013         158 DLCEGGYLPMADPGYKSRYLRSEDR  182 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~~ak~~re~dr  182 (258)
                      .+||  +...++|. .+.++|+.||
T Consensus       309 fHCE--fSshRaP~-LA~HlRN~DR  330 (427)
T COG5105         309 FHCE--FSSHRAPR-LAQHLRNMDR  330 (427)
T ss_pred             EEee--cccccchh-HHHHHhhhhh
Confidence            3677  55555554 2344444443

>KOG1529|consensus

Probab=98.37  E-value=1.1e-06  Score=77.86  Aligned_cols=114  Identities=20%  Similarity=0.390  Sum_probs=71.5

Q ss_pred             CccCHHHHHHHHhcccC-CCCCCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhH-H-HHh--hHHHhhc
Q psy1013          33 KNISPDTLARLIRGEFN-DVVDKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVK-E-FIE--SKVHAQS   96 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~-~~~~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~-~-~~~--~~~~~~~   96 (258)
                      ..++...+..+.+-.++ .+..++.+||.|...+|.           +||||||+|+|. .++.. . +..  ..+....
T Consensus       150 ~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~-~~~~~~~g~~k~~edl~~~f  228 (286)
T KOG1529|consen  150 ASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPF-DEVLDPDGFIKPAEDLKHLF  228 (286)
T ss_pred             hhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCCh-HHhcccccccCCHHHHHHHH
Confidence            34555545444443333 344679999999877774           589999999999 44421 1 111  1111111


Q ss_pred             cccC-CCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccc
Q psy1013          97 NATC-DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDL  159 (258)
Q Consensus        97 ~~~~-~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~  159 (258)
                      .... .....+|+-|+ .|..+...+-.|...          | ++|.+++|++..|....|++
T Consensus       229 ~~~~l~~~~p~~~sC~-~Gisa~~i~~al~r~----------g-~~~~lYdGS~~Ew~~~~Pe~  280 (286)
T KOG1529|consen  229 AQKGLKLSKPVIVSCG-TGISASIIALALERS----------G-PDAKLYDGSWTEWALRAPEL  280 (286)
T ss_pred             HhcCcccCCCEEEeec-cchhHHHHHHHHHhc----------C-CCcceecccHHHHhhcCchh
Confidence            1111 12334778898 777777777777777          8 89999999999998654443

>KOG3772|consensus

Probab=98.36  E-value=8.5e-08  Score=86.54  Aligned_cols=78  Identities=32%  Similarity=0.670  Sum_probs=59.3

Q ss_pred             ccccCCcccCCCCCCccccccccccccc--CCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccH--HHHHHHH
Q psy1013         158 DLCEGGYLPMADPGYKSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYK--SDFQTFR  233 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~~ak~~re~dr~~n--~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~--~~~~~~~  233 (258)
                      .+|+  +...+||+ .++++|+.||+.|  .||.|+|||+|||+|||++||..|+        ..-+|..-  .....|+
T Consensus       227 FhCe--fSq~RGP~-mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~--------~LCeP~~Yv~M~h~~~~  295 (325)
T KOG3772|consen  227 FHCE--FSQERGPK-MARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP--------NLCEPQSYVPMHHEAFK  295 (325)
T ss_pred             EEee--eccccCHH-HHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc--------cccCccceecccchhHH
Confidence            5888  88888887 6788998888865  9999999999999999999999987        34444422  1234667


Q ss_pred             hhccccccccccc
Q psy1013         234 SKSKTWSCDYKAN  246 (258)
Q Consensus       234 ~~~~~~~~~~~~~  246 (258)
                      ..+|......+.-
T Consensus       296 ~~~k~~~~~~~~~  308 (325)
T KOG3772|consen  296 DELKRFRTKSRSW  308 (325)
T ss_pred             HHHhhhccccccc
Confidence            7777766665543

>KOG1717|consensus

Probab=98.02  E-value=2.7e-06  Score=74.73  Aligned_cols=114  Identities=21%  Similarity=0.291  Sum_probs=72.3

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhcc----------ccCCCc
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSN----------ATCDKR  103 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~----------~~~~~~  103 (258)
                      .+|++||...+..      .+++++|||+    +..||.+|+|+-.+.-+..+...+.+.....          ....+.
T Consensus         5 ~~s~~wlnr~l~~------~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~   74 (343)
T KOG1717|consen    5 SKSVAWLNRQLEL------GNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGT   74 (343)
T ss_pred             HHHHHHHHhhccc------CceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCc
Confidence            4788999998887      6799999999    6789999999998544444443332221111          111233


Q ss_pred             eEEEEecCCCCCc--HHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013         104 RVLIFHCEYSAER--GPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       104 ~~vV~yc~~s~~r--s~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      ..+|.|++.+.+.  -+.++..|.....   +....|+ .++.|.|||..|..+++++|+
T Consensus        75 v~vilyD~~~~e~e~~~~~~s~Lg~ll~---kl~~~g~-~a~yL~ggF~~fq~e~~~~ce  130 (343)
T KOG1717|consen   75 VTVILYDESSAEWEEETGAESVLGLLLK---KLKDEGC-SARYLSGGFSKFQAEASEHCE  130 (343)
T ss_pred             ceeeecccccccccccchhhhHHHHHHH---HHHhcCc-chhhhhcccchhhhhhhhhcc
Confidence            6788998843221  1111222222110   1112276 589999999999999999998

>COG2603 Predicted ATPase [General function prediction only]

Probab=96.78  E-value=0.0025  Score=57.02  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=57.2

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHH--------------------HHhhHHH-hhcc----ccCCCceEEE
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE--------------------FIESKVH-AQSN----ATCDKRRVLI  107 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~--------------------~~~~~~~-~~~~----~~~~~~~~vV  107 (258)
                      ++..+||||.|-||..||.|+++|+|...+....                    ...+.+. +.+.    ...+.+. -|
T Consensus        14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~-Gi   92 (334)
T COG2603          14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPV-GI   92 (334)
T ss_pred             cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCc-ce
Confidence            4678999999999999999999999974332111                    0000000 0000    0112332 33


Q ss_pred             EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013         108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                       +|..+|.|+...+.+|...+         |.. .--+.||+++.+.
T Consensus        93 -~c~rgg~rsk~v~~~l~~~~---------g~~-~~r~iGGeKalrt  128 (334)
T COG2603          93 -LCARGGLRSKIVQKWLGYAA---------GID-YPRVIGGEKALRT  128 (334)
T ss_pred             -eeccccchhHHHHHHHHHHH---------Hhh-hhhhhchHHHHHH
Confidence             49999999999999994442         553 4456799988764

>KOG1093|consensus

Probab=95.45  E-value=0.0029  Score=61.29  Aligned_cols=100  Identities=15%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ....+.||++++..+         ..+.++|.|...||..+|+++++|+|. . ..+.-.......+ .........+|+
T Consensus       618 se~~prmsAedl~~~---------~~l~v~d~r~~~ef~r~~~s~s~nip~-~-~~ea~l~~~~~l~-~~~~~~~~~~v~  685 (725)
T KOG1093|consen  618 SEHCPRISAEDLIWL---------KMLYVLDTRQESEFQREHFSDSINIPF-N-NHEADLDWLRFLP-GIVCSEGKKCVV  685 (725)
T ss_pred             hhcCccccHHHHHHH---------HHHHHHhHHHHHHHHHhhccccccCCc-c-chHHHHHHhhcch-HhHHhhCCeEEE
Confidence            345678999988776         347899999999999999999999999 4 2222111110000 111223333445


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHH
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ  151 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~  151 (258)
                      +.. ..+-+.+....+..+          -++.+.+|++|+.+
T Consensus       686 ~~~-~~K~~~e~~~~~~~m----------k~p~~cil~~~~~~  717 (725)
T KOG1093|consen  686 VGK-NDKHAAERLTELYVM----------KVPRICILHDGFNN  717 (725)
T ss_pred             ecc-chHHHHHHhhHHHHh----------cccHHHHHHHHHhh
Confidence            433 333444445555555          56788899999873

>KOG3636|consensus

Probab=93.28  E-value=0.3  Score=46.44  Aligned_cols=29  Identities=28%  Similarity=0.709  Sum_probs=26.0

Q ss_pred             CeEEEEecCchhhccCCcCCceeCCCchhh
Q psy1013          54 KYLIIDCRYPYEYKGGHIQGALNIYTREHL   83 (258)
Q Consensus        54 ~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l   83 (258)
                      ++.|||||+.++|+.||+-.|.|+.. .-+
T Consensus       326 rFFiVDcRpaeqynaGHlstaFhlDc-~lm  354 (669)
T KOG3636|consen  326 RFFIVDCRPAEQYNAGHLSTAFHLDC-VLM  354 (669)
T ss_pred             EEEEEeccchhhcccccchhhhcccH-HHH
Confidence            68899999999999999999999987 444

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=90.60  E-value=0.17  Score=39.81  Aligned_cols=23  Identities=39%  Similarity=0.898  Sum_probs=21.0

Q ss_pred             CCCceeeechhhHHHHhhhccCC
Q psy1013         191 DYPEMYLLNGGYKQFYAQHQDLC  213 (258)
Q Consensus       191 ~ype~~~ld~g~~~~~~~~~~~c  213 (258)
                      .+..+++|+|||..|.+.||++|
T Consensus       110 ~~~~v~~L~GG~~~w~~~~p~~~  132 (132)
T cd01446         110 EGCSVYLLKGGFEQFSSEFPELC  132 (132)
T ss_pred             CCceEEEEcchHHHHHhhCcccC
Confidence            34679999999999999999999

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=90.58  E-value=1.3  Score=34.11  Aligned_cols=26  Identities=35%  Similarity=0.401  Sum_probs=16.7

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchh
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYE   65 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~E   65 (258)
                      -|+++++.++-..+|      -.||+.|+..|
T Consensus        14 Q~~~~d~~~la~~Gf------ktVInlRpd~E   39 (110)
T PF04273_consen   14 QPSPEDLAQLAAQGF------KTVINLRPDGE   39 (110)
T ss_dssp             S--HHHHHHHHHCT--------EEEE-S-TTS
T ss_pred             CCCHHHHHHHHHCCC------cEEEECCCCCC
Confidence            589999999988753      47999998655

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=88.18  E-value=0.97  Score=35.98  Aligned_cols=28  Identities=14%  Similarity=0.029  Sum_probs=21.0

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhh
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY   66 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey   66 (258)
                      ..+|++++..+.+.      +=-.|||.|++.|-
T Consensus        13 ~qlt~~d~~~L~~~------GiktVIdlR~~~E~   40 (135)
T TIGR01244        13 PQLTKADAAQAAQL------GFKTVINNRPDREE   40 (135)
T ss_pred             CCCCHHHHHHHHHC------CCcEEEECCCCCCC
Confidence            56889999887665      33579999987663

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=87.99  E-value=0.14  Score=46.91  Aligned_cols=41  Identities=10%  Similarity=-0.006  Sum_probs=34.1

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhh
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHL   83 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l   83 (258)
                      =+++++.+.+..       ...++|+|....|..+||+|++|+|. ..+
T Consensus        16 ~~~~~~~~~l~~-------~~~~~d~rg~i~~a~egIngtis~~~-~~~   56 (314)
T PRK00142         16 EDPEAFRDEHLA-------LCKSLGLKGRILVAEEGINGTVSGTI-EQT   56 (314)
T ss_pred             CCHHHHHHHHHH-------HHHHcCCeeEEEEcCCCceEEEEecH-HHH
Confidence            346888887775       35789999999999999999999998 544

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=84.13  E-value=3.4  Score=37.76  Aligned_cols=37  Identities=14%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc---CCcC-Cc
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG---GHIQ-GA   74 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~---gHIp-GA   74 (258)
                      ...+...+|.+.+.+      ....|||+|...+|.+   |||+ |.
T Consensus       135 ~tg~gKt~Ll~~L~~------~~~~VvDlr~~a~hrGs~fG~~~~~~  175 (311)
T TIGR03167       135 MTGSGKTELLHALAN------AGAQVLDLEGLANHRGSSFGALGLGP  175 (311)
T ss_pred             CCCcCHHHHHHHHhc------CCCeEEECCchHHhcCcccCCCCCCC
Confidence            466888999999987      5688999999999999   8998 53

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
1ymk_A	175	Crystal Structure Of The Cdc25b Phosphatase Catalyt		7e-45
1qb0_A	211	Human Cdc25b Catalytic Domain Length = 211		1e-44
1cwt_A	178	Human Cdc25b Catalytic Domain With Methyl Mercury L		2e-44
3op3_A	216	Crystal Structure Of Cell Division Cycle 25c Protei		2e-44
2ifd_A	175	Crystal Structure Of A Remote Binding Site Mutant,		5e-44
2a2k_A	175	Crystal Structure Of An Active Site Mutant, C473s,		9e-44
1ym9_A	175	Crystal Structure Of The Cdc25b Phosphatase Catalyt		1e-43
2ifv_A	175	Crystal Structure Of An Active Site Mutant, C473d,		2e-43
2uzq_A	203	Protein Phosphatase, New Crystal Form Length = 203		8e-43
1c25_A	161	Human Cdc25a Catalytic Domain Length = 161		2e-39
3f4a_A	169	Structure Of Ygr203w, A Yeast Protein Tyrosine Phos		9e-06
3fs5_A	152	Crystal Structure Of Saccharomyces Cerevisiae Ygr20		8e-05

>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic Domain In The Apo Form Length = 175

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 118/166 (71%), Gaps = 5/166 (3%)
Query: 9   LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
           + LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1   MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69  GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
           GHI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R++R  D
Sbjct: 60  GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           RA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162

>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain Length = 211

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 5/165 (3%)
Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
            LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 22  ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 80
Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
           HI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R++R  DR
Sbjct: 81  HIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDR 137
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           A N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 138 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 182

>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury Length = 178

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 5/165 (3%)
Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
            LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 4   ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 62
Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
           HI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R++R  DR
Sbjct: 63  HIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDR 119
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           A N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 120 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 164

>pdb|3OP3|A Chain A, Crystal Structure Of Cell Division Cycle 25c Protein Isoform A From Homo Sapiens Length = 216

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 120/175 (68%), Gaps = 5/175 (2%)
Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
           +LIGDFSK   LP V  GKH DLK ++P+T+A L+ G+F  +++K+ +IDCRYPYEY GG
Sbjct: 35  HLIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGG 93
Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
           HIQGALN+Y++E L   F++  +         KR +++FHCE+S+ERGP + R LR EDR
Sbjct: 94  HIQGALNLYSQEELFNFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRCLREEDR 150
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLRSEDRA 183
           + N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+  LR   ++
Sbjct: 151 SLNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKTELLRCRSQS 205

>pdb|2IFD|A Chain A, Crystal Structure Of A Remote Binding Site Mutant, R492l, Of Cdc25b Phosphatase Catalytic Domain Length = 175

Iteration: 1
 Score =  174 bits (440), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9   LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
           + LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1   MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69  GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
           GHI+ A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R++R  D
Sbjct: 60  GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
            A N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 117 LAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162

>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of Cdc25b Phosphatase Catalytic Domain Length = 175

Iteration: 1
 Score =  173 bits (438), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9   LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
           + LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1   MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69  GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
           GHI+ A+N+          ++S +   +  + DKR +LIFH E+S+ERGP + R++R  D
Sbjct: 60  GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHSEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           RA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162

>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic Domain With The Active Site Cysteine In The Sulfinic Form Length = 175

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9   LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
           + LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1   MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69  GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
           GHI+ A+N+          ++S +   +  + DKR +LIFH E+S+ERGP + R++R  D
Sbjct: 60  GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHXEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           RA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162

>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of Cdc25b Phosphatase Catalytic Domain Length = 175

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9   LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
           + LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1   MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69  GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
           GHI+ A+N+          ++S +   +  + DKR +LIFH E+S+ERGP + R++R  D
Sbjct: 60  GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHDEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           RA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162

>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form Length = 203

Iteration: 1
 Score =  170 bits (430), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 114/161 (70%), Gaps = 5/161 (3%)
Query: 14  DFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQG 73
           D+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+GGHI+ 
Sbjct: 18  DYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKT 76
Query: 74  ALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA 133
           A+N+          ++S +   +  + DKR +LIFHCE+S+ERGP + R++R  DRA N 
Sbjct: 77  AVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVND 133
Query: 134 YPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
           YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K
Sbjct: 134 YPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 174

>pdb|1C25|A Chain A, Human Cdc25a Catalytic Domain Length = 161

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 6/165 (3%)
Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK ++   V  GKH DLK ISP+ +A ++ G+F +++ +++IIDCRYPYEY+GGH
Sbjct: 2   LIGDFSKGYLFHTVA-GKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGH 60
Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+GA+N++  E  V++F+  K    ++    KR +++FHCE+S+ERGP + RY+R  DR 
Sbjct: 61  IKGAVNLHMEEE-VEDFLLKKPIVPTDG---KRVIVVFHCEFSSERGPRMCRYVRERDRL 116
Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS 174
            N YP L YPE+Y+L GGYK+F+ + Q  CE   Y PM    +K 
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKE 161

>pdb|3F4A|A Chain A, Structure Of Ygr203w, A Yeast Protein Tyrosine Phosphatase Of The Rhodanese Family Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 31  DLKNISPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGALN-IYTREHLVKEFI 88
           ++K + P  L R  + G    + + + ++D R   +Y GGHI+   +  Y+R     E++
Sbjct: 29  NVKYLDPTELHRWXQEGHTTTLREPFQVVDVR-GSDYXGGHIKDGWHYAYSRLKQDPEYL 87
Query: 89  ESKVHAQSNATCDKRRVL--IFHCEYSAERGPTLSR-YLRSEDRAHNAYPTLDYPEMYLL 145
               H       D R  L  IFHC  S +RGP+ +   LRS D A      L    +++L
Sbjct: 88  RELKHRLLEKQADGRGALNVIFHCXLSQQRGPSAAXLLLRSLDTAE-----LSRCRLWVL 142
Query: 146 NGGYKQFYAQHQD--LCEGGYLP 166
            GG+ ++ + + D      GYLP
Sbjct: 143 RGGFSRWQSVYGDDESVTAGYLP 165

>pdb|3FS5|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ygr203w, A Homolog Of Single-Domain Rhodanese And Cdc25 Phosphatase Catalytic Domain Length = 152

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 31  DLKNISPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGALN-IYTREHLVKEFI 88
           ++K + P  L R ++ G    + + + ++D R   +Y GGHI+   +  Y+R     E++
Sbjct: 8   NVKYLDPTELHRWMQEGHTTTLREPFQVVDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYL 66
Query: 89  ESKVHAQSNATCDKRRVL--IFHCEYSAERGPTLSR-YLRSEDRAHNAYPTLDYPEMYLL 145
               H       D R  L  IFH   S +RGP+ +   LRS D A      L    +++L
Sbjct: 67  RELKHRLLEKQADGRGALNVIFHXMLSQQRGPSAAMLLLRSLDTAE-----LSRCRLWVL 121
Query: 146 NGGYKQFYAQHQD--LCEGGYLP 166
            GG+ ++ + + D      GYLP
Sbjct: 122 RGGFSRWQSVYGDDESVTAGYLP 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	3e-65
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	7e-61
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	4e-60
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	2e-59
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	2e-33
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	3e-07
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	2e-29
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	6e-25
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	3e-22
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	3e-21
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	7e-18
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	9e-18
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	1e-17
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	1e-16
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	2e-10
1tq1_A	129	AT5G66040, senescence-associated family protein; C	1e-09
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	8e-08
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	1e-07
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	2e-07
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	3e-07
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	5e-07
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	7e-07
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	9e-07
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	1e-06
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	2e-06
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	6e-06
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-05
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-05
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	8e-05
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-04
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	3e-05
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	9e-05
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	9e-05
2jtq_A	85	Phage shock protein E; solution structure rhodanes	1e-04
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	1e-04
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	5e-04

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score =  200 bits (509), Expect = 3e-65
 Identities = 86/178 (48%), Positives = 121/178 (67%), Gaps = 7/178 (3%)

Query: 9   LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
           + LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1   MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59

Query: 69  GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
           GHI+ A+N+          ++S +   S    DKR +LIFH E+S+ERGP + R++R  D
Sbjct: 60  GHIKTAVNLPLERDAESFLLKSPIAPCSL---DKRVILIFHSEFSSERGPRMCRFIRERD 116

Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS--RYLRSEDRA 183
           RA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K   +  R + R+
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRS 174

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score =  188 bits (478), Expect = 7e-61
 Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 6/164 (3%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK ++   V  GKH DLK ISP+ +A ++ G+F +++ +++IIDCRYPYEY+GGH
Sbjct: 2   LIGDFSKGYLFHTVA-GKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGH 60

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+GA+N++  E +    ++  +         KR +++FHCE+S+ERGP + RY+R  DR 
Sbjct: 61  IKGAVNLHMEEEVEDFLLKKPIVPTD----GKRVIVVFHCEFSSERGPRMCRYVRERDRL 116

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
            N YP L YPE+Y+L GGYK+F+ + Q  CE   Y PM    +K
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFK 160

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score =  188 bits (478), Expect = 4e-60
 Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 7/188 (3%)

Query: 1   MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDC 60
             +L      LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DC
Sbjct: 13  ENLLDSDHRELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDC 71

Query: 61  RYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTL 120
           RYPYEY+GGHI+ A+N+          ++S +   S    DKR +LIFHCE+S+ERGP +
Sbjct: 72  RYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSL---DKRVILIFHCEFSSERGPRM 128

Query: 121 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS--RYL 177
            R++R  DRA N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K   +  
Sbjct: 129 CRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTF 188

Query: 178 RSEDRAHN 185
           R + R+  
Sbjct: 189 RLKTRSWA 196

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score =  186 bits (473), Expect = 2e-59
 Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 7/182 (3%)

Query: 8   DLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK 67
             +LIGDFSK   LP V  GKH DLK ++P+T+A L+ G+F  +++K+ +IDCRYPYEY 
Sbjct: 33  QGHLIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYL 91

Query: 68  GGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSE 127
           GGHIQGALN+Y++E L   F++  +         KR +++FHCE+S+ERGP + R LR E
Sbjct: 92  GGHIQGALNLYSQEELFNFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRCLREE 148

Query: 128 DRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS--RYLRSEDRAH 184
           DR+ N YP L YPE+Y+L GGY+ F+ ++ +LCE   Y PM    +K+     RS+ +  
Sbjct: 149 DRSLNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKTELLRCRSQSKVQ 208

Query: 185 NA 186
             
Sbjct: 209 EG 210

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score =  117 bits (295), Expect = 2e-33
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 31  DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES 90
           +   I P+ L  L+     D + K  +IDCR   +   G I  ++N+ T     + + + 
Sbjct: 3   NYTYIKPEELVELLDN--PDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKL 59

Query: 91  KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
                      K+ + +FHC  S  R P  +       +          P +Y+L GG++
Sbjct: 60  AKTLFEE----KKELAVFHCAQSLVRAPKGANRFALAQKKLG----YVLPAVYVLRGGWE 111

Query: 151 QFYAQHQDLCEG-GYLPMADPGYKSRY 176
            FY  + D+     Y+ +         
Sbjct: 112 AFYHMYGDVRPDLMYVKLGPEQKLISE 138

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 174 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS 227
           +       +          P +Y+L GG++ FY  + D+     Y+ +       
Sbjct: 86  ANRFALAQKKLG----YVLPAVYVLRGGWEAFYHMYGDVRPDLMYVKLGPEQKLI 136

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score =  107 bits (269), Expect = 2e-29
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 18/157 (11%)

Query: 16  SKQFILPLVPDGKHHDLKNISPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGA 74
            +      +      ++K + P  L R ++ G    + + + ++D R   +Y GGHI+  
Sbjct: 14  RENLYFQGMDSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVR-GSDYMGGHIKDG 72

Query: 75  LNI-----YTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLS-RYLRSED 128
            +            ++E     +  Q++        +IFHC  S +RGP+ +   LRS D
Sbjct: 73  WHYAYSRLKQDPEYLRELKHRLLEKQADG--RGALNVIFHCMLSQQRGPSAAMLLLRSLD 130

Query: 129 RAHNAYPTLDYPEMYLLNGGYKQF---YAQHQDLCEG 162
            A      L    +++L GG+ ++   Y   + +  G
Sbjct: 131 TAE-----LSRCRLWVLRGGFSRWQSVYGDDESVTAG 162

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 95.8 bits (238), Expect = 6e-25
 Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
           +  I+   L  L R           IID R       GHI G+L+            + K
Sbjct: 27  ISYITSTQLLPLHRR------PNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK 74

Query: 92  VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
           +        DK  + +FH   S  RGPT +R L +               + +L  G+  
Sbjct: 75  ISHLVQNVKDKDTL-VFHSALSQVRGPTCARRLVNYLD--EKKEDTGIKNIMILERGFNG 131

Query: 152 FYAQHQDLCEGGYLP 166
           + A  + +C    +P
Sbjct: 132 WEASGKPVCRCAEVP 146

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Length = 142

 Score = 88.5 bits (219), Expect = 3e-22
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 33  KNISPDTLARLIRGEFNDVV--DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE-FIE 89
           K I P+ LA+ +       +     +IIDCR   EY   HIQGA++I   + + +    +
Sbjct: 1   KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQ 60

Query: 90  SKVHAQSNATCDKRRVLIFHCEYSA----ERGPTLSRYLRSEDRAHNAYPTL--DYPEMY 143
            K+      +C + +              +        +      H    +L  +  E  
Sbjct: 61  GKITVLDLISCREGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPL 120

Query: 144 LLNGGYKQFYAQHQDLCEG 162
           +L GG   F   H++LC+ 
Sbjct: 121 VLKGGLSSFKQNHENLCDN 139

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 86.3 bits (213), Expect = 3e-21
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 23  LVPDGKHHDLKNISPDTLARLIRGEFNDVV--DKYLIIDCRYPYEYKGGHIQGALNIYTR 80
           +    +   +K I P+ LA+ +       +     +IIDCR   EY   HIQGA++I   
Sbjct: 1   MGTPKQLASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCA 60

Query: 81  EHLVKEFIES-KVHAQSNATCDKRRVLIFHCEYSA----ERGPTLSRYLRSEDRAHNAYP 135
           + + +  ++  K+      +C + +              +        +      H    
Sbjct: 61  DKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLE 120

Query: 136 TL--DYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGY 172
           +L  +  E  +L GG   F   H++LC+   L      +
Sbjct: 121 SLKREGKEPLVLKGGLSSFKQNHENLCDNS-LEHHHHHH 158

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 77.4 bits (190), Expect = 7e-18
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 23  LVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI---YT 79
           LVP G       I+   L  ++  +   +    +I+D R   +Y+   I  +L++     
Sbjct: 14  LVPRGSGA----ITAKELYTMMTDKNISL----IIMDARRMQDYQDSCILHSLSVPEEAI 65

Query: 80  REHLVKEFIESKVHAQSNATCDKR---RVLIFHCEYSAERGPTLSRYLRSEDRA--HNAY 134
              +   +IE+ +   S  T  KR     ++    +S+ +   +   LRS   A      
Sbjct: 66  SPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWES 125

Query: 135 PTLDYPEMYLLNGGYKQFYAQHQDLC 160
            T+   E  +L GGY+ +   +    
Sbjct: 126 KTVLRNEPLVLEGGYENWLLCYPQYT 151

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 76.8 bits (188), Expect = 9e-18
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 17/143 (11%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
           I  + L  L+        +K L+ID R   EY   HI  A+NI   + + +   + KV  
Sbjct: 6   IVTERLVALLESGT----EKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLI 61

Query: 95  QSNATCDKR--------RVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLN 146
                   +        + ++ + + S +     S    +            +  ++LL 
Sbjct: 62  TELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKL---EKSFNSVHLLA 118

Query: 147 GGYKQFYAQHQDLCEGG--YLPM 167
           GG+ +F      LCEG    +P 
Sbjct: 119 GGFAEFSRCFPGLCEGKSTLVPT 141

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 76.3 bits (187), Expect = 1e-17
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
            +   L   +      +    L++DCR    Y+  HI+ A+N+     +++   +  +  
Sbjct: 18  KTVAWLNEQLELGNERL----LLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 95  QSNATCD------KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL--DYPEMYLLN 146
           ++  T         RR          E     +     E         L  +    + L 
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133

Query: 147 GGYKQFYAQHQDLCEGG 163
           GG+ +F A+    CE  
Sbjct: 134 GGFSKFQAEFSLHCETN 150

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI---YTREHLVKEFIESK 91
           I+   L  ++  +   +    +I+D R   +Y+   I  +L++        +   +IE+ 
Sbjct: 17  ITAKELYTMMTDKNISL----IIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH 72

Query: 92  VHAQSNATCDKR---RVLIFHCEYSAERGPTLSRYLRSEDRA--HNAYPTLDYPEMYLLN 146
           +   S  T  KR     ++    +S+ +   +   LRS   A       T+   E  +L 
Sbjct: 73  LPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLE 132

Query: 147 GGYKQFYAQHQDLCEG 162
           GGY+ +   +      
Sbjct: 133 GGYENWLLCYPQYTTN 148

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 29/128 (22%)

Query: 31  DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI-----YTREHLVK 85
           ++++ S + + R++     +VV    ++D R P EY   HI  ++N+          L  
Sbjct: 21  NIQSYSFEDMKRIVGKHDPNVV----LVDVREPSEYSIVHIPASINVPYRSHPDAFALDP 76

Query: 86  EFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEM 142
              E ++        D  + LIF+C               S  R   A        Y   
Sbjct: 77  LEFEKQIGI---PKPDSAKELIFYC--------------ASGKRGGEAQKVASSHGYSNT 119

Query: 143 YLLNGGYK 150
            L  G   
Sbjct: 120 SLYPGSMN 127

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)

Query: 33  KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI-YTREHLVKEFIESK 91
            ++S      L+          +  +D R P E+  GH  GA+N+ Y           + 
Sbjct: 18  SSVSVTVAHDLLL-------AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTD 70

Query: 92  VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGG 148
              Q ++   +   +I  C              +S  R+  A   L    +  +  + GG
Sbjct: 71  FLEQVSSHFGQSDNIIVGC--------------QSGGRSIKATTDLLHAGFTGVKDIVGG 116

Query: 149 YK 150
           Y 
Sbjct: 117 YS 118

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 33/120 (27%)

Query: 35  ISPDTL-ARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVH 93
                L +RL  GE       + I+D R    Y  GHI GA+ +   +          + 
Sbjct: 2   SDAHVLKSRLEWGE-----PAFTILDVRDRSTYNDGHIMGAMAMPIED----------LV 46

Query: 94  AQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGGYK 150
            +++++ +K R +  +                 +++   A   L    +  +  L GG  
Sbjct: 47  DRASSSLEKSRDIYVYG--------------AGDEQTSQAVNLLRSAGFEHVSELKGGLA 92

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 28/120 (23%)

Query: 31  DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES 90
             + I+     + ++ +      + +++D R P  +  GH   A ++ T + L     + 
Sbjct: 3   QFECINVADAHQKLQEK------EAVLVDIRDPQSFAMGHAVQAFHL-TNDTLGAFMRD- 54

Query: 91  KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
                     D    ++  C Y        ++YL              Y  +Y ++GG++
Sbjct: 55  ---------NDFDTPVMVMC-YHGNSSKGAAQYLLQ----------QGYDVVYSIDGGFE 94

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 18/131 (13%)

Query: 34  NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI----- 88
            +S   + + ++      +DK + +D R   EY+  HI  A+N+   ++     +     
Sbjct: 3   AMSVIKIEKALK------LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYK 56

Query: 89  -----ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYP--E 141
                E+        +   + + +   E +      +    R   R+ +    L      
Sbjct: 57  MQGKHEAIQKGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN 116

Query: 142 MYLLNGGYKQF 152
           +Y L GGYK +
Sbjct: 117 VYQLEGGYKAY 127

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 32/113 (28%)

Query: 41  ARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATC 100
           +RL  GE       + I+D R    Y  GHI GA+ +   +          +  +++++ 
Sbjct: 5   SRLEWGE-----PAFTILDVRDRSTYNDGHIMGAMAMPIED----------LVDRASSSL 49

Query: 101 DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGGYK 150
           +K R +  +                 +++   A   L    +  +  L GG  
Sbjct: 50  EKSRDIYVYG--------------AGDEQTSQAVNLLRSAGFEHVSELKGGLA 88

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
            ++I+          +  + +  Y ++D R P+E   G I  ++NI
Sbjct: 2  YYRSINAA--------DLYENIKAYTVLDVREPFELIFGSIANSINI 40

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 7/46 (15%)

Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
          ++ + P+ L  L+        +  L++D R            A  +
Sbjct: 1  MRKVRPEELPALLE-------EGVLVVDVRPADRRSTPLPFAAEWV 39

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
          ++I+   L   I        +   I+D R   E   G I GA  I
Sbjct: 2  ESITVTELKEKILDA-----NPVNIVDVRTDQETAMGIIPGAETI 41

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-KGGHIQGALNIYTREHLVKEFIES 90
           ++ ++      L +   +DVV    I+D R P E  + G I G+ +  TR  L  EF   
Sbjct: 21  IETLTTADAIALHKSGASDVV----IVDIRDPREIERDGKIPGSFSC-TRGML--EFWID 73

Query: 91  KVHAQSNATCDKRRVLIFHC 110
                +     + +  +F+C
Sbjct: 74  PQSPYAKPIFQEDKKFVFYC 93

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 11/82 (13%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI------YTREHLVKEFI 88
           +S     RL+          +L++D R   E     +  AL+I            +K   
Sbjct: 3   VSVTDYKRLLDSG-----AFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLK 57

Query: 89  ESKVHAQSNATCDKRRVLIFHC 110
           E+    +          +   C
Sbjct: 58  EAIWEEKQGTQEGAAVPIYVIC 79

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 38/166 (22%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
           +   +   +   +         +  ++D R    +   H   A N+     L  E I ++
Sbjct: 6   IAVRTFHDIRAALLAR-----RELALLDVREEDPFAQAHPLFAANL-PLSRLELE-IHAR 58

Query: 92  VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGG 148
           V         +   +  + +               E  A  A   L    Y ++ LL+GG
Sbjct: 59  VP-------RRDTPITVYDD--------------GEGLAPVAAQRLHDLGYSDVALLDGG 97

Query: 149 YKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPE 194
              +          G     D    S+       A    P+L   E
Sbjct: 98  LSGWRNA-------GGELFRDVNVPSKAFGELVEAERHTPSLAAEE 136

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 29/166 (17%), Positives = 45/166 (27%), Gaps = 38/166 (22%)

Query: 29  HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI 88
                 I P TLA  +            ++D      Y   HI GA  +  R  L     
Sbjct: 373 QPRADTIDPTTLADWLGE------PGTRVLDFTASANYAKRHIPGAAWV-LRSQL----- 420

Query: 89  ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL---DYPEMYLL 145
                 Q+          +  C               S   A  A   +       ++LL
Sbjct: 421 -----KQALERLGTAERYVLTC--------------GSSLLARFAVAEVQALSGKPVFLL 461

Query: 146 NGGYKQFYAQHQDLCEGGYLPMADPG--YKSRYLRSE--DRAHNAY 187
           +GG   + A      +G  L  +     Y+  Y  ++    A   Y
Sbjct: 462 DGGTSAWVAAGLPTEDGESLLASPRIDRYRRPYEGTDNPREAMQGY 507

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 32/161 (19%)

Query: 29  HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI 88
                +++ + +  L+     D   + +I+D R   EY+   I G +++   E      +
Sbjct: 126 ERHTPSLAAEEVQALL-----DARAEAVILDARRFDEYQTMSIPGGISVPGAE------L 174

Query: 89  ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD----YPEMYL 144
             +V   +    D R  +I +C                  R+     +L        +  
Sbjct: 175 VLRVAELAP---DPRTRVIVNC--------------AGRTRSIIGTQSLLNAGIPNPVAA 217

Query: 145 LNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHN 185
           L  G   +    Q L  G           +R   ++     
Sbjct: 218 LRNGTIGWTLAGQQLEHGQTRRFGAISQDTRKAAAQRARAV 258

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 28  KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
               ++ +    LA+      ++      ++D R P EY+ GH+ G+ + 
Sbjct: 260 DRAGVERLDLAGLAQWQ----DEHDRTTYLLDVRTPEEYEAGHLPGSRST 305

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 53 DKYLIIDCRYPYEYKGGHIQGALNI 77
          + ++++D R   EY+  H+  A  I
Sbjct: 15 NDFIVVDVRELDEYEELHLPNATLI 39

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 36/132 (27%)

Query: 31  DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI---YTREHLVKEF 87
            +  +    + R++        +   +ID R P E K G I+G++NI     R+ L    
Sbjct: 487 FVDTVQWHEIDRIVE-------NGGYLIDVREPNELKQGMIKGSINIPLDELRDRL---- 535

Query: 88  IESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNG 147
                           + +   C+    RG   +R L         Y      ++  ++G
Sbjct: 536 ----------EEVPVDKDIYITCQ-LGMRGYVAARMLM-----EKGY------KVKNVDG 573

Query: 148 GYKQFYAQHQDL 159
           G+K +     + 
Sbjct: 574 GFKLYGTVLPER 585

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 29/109 (26%)

Query: 47  EFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYT---REHLVKEFIESKVHAQSNATCDKR 103
           + +++ +  L++D R P E + G ++GA+NI     R+ +  E               K 
Sbjct: 479 QIDNLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRM-HEL-------------PKD 524

Query: 104 RVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQF 152
           + +I   +    RG    R L      +N Y          L GGY+ +
Sbjct: 525 KEIIIFSQ-VGLRGNVAYRQLV-----NNGY------RARNLIGGYRTY 561

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
               L+  I+       +  +++D R    YK  HI  A++I
Sbjct: 18 TDIADLSIDIK----KGYEGIIVVDVRDAEAYKECHIPTAISI 56

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 57 IIDCRYPYEYKGGHIQGALNI 77
           ID R P +Y+  H+QGA+NI
Sbjct: 4  WIDVRVPEQYQQEHVQGAINI 24

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 38 DTLARLIRGEFNDVVDKYLIIDCR-YPYEYKGGHIQGALNI 77
            LA +          KY+++D R  P + K   I+GA+ +
Sbjct: 21 TVLADMQNAT-----GKYVVLDVRNAPAQVKKDQIKGAIAM 56

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 17/83 (20%)

Query: 31  DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH---IQGALNIYTREHLVKEF 87
           D+  +SP    +L++           +ID R P E K      ++   ++       +  
Sbjct: 21  DMVMLSPKDAYKLLQEN-----PDITLIDVRDPDELKAMGKPDVKNYKHMS------RGK 69

Query: 88  IESKVHAQSNATCDKRRVLIFHC 110
           +E  +     +  D  + ++  C
Sbjct: 70  LEPLLA---KSGLDPEKPVVVFC 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 47/194 (24%)

Query: 1   MKILADL-DLNLIGDFSKQFILPLVPDGKHHDL---KNISPDTLARLIRGEFNDVVDKYL 56
           M ++  L   +L+    K+  + +        +     +  +    L R     +VD Y 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI------PSIYLELKVKLENEYALHR----SIVDHYN 454

Query: 57  IIDCR------------YPYEYKGGHIQGA-----LNIYTREHLVKEFIESKVHAQSNAT 99
           I                Y Y + G H++       + ++    L   F+E K+   S A 
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 100 CDKRRV------LIFHCEYSAERGPTLSRYLRS-EDRAHNA------YPTLDYPEMYLLN 146
                +      L F+  Y  +  P   R + +  D               D   + L+ 
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Query: 147 ---GGYKQFYAQHQ 157
                +++ + Q Q
Sbjct: 575 EDEAIFEEAHKQVQ 588

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 26/127 (20%)

Query: 33  KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK------- 85
            +I+P     ++         + +++D R   E++   +    ++      V+       
Sbjct: 5   GDITPLQAWEMLSDN-----PRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGT 59

Query: 86  ---EFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEM 142
               F+               R +IF C  S  R    +                     
Sbjct: 60  HNDNFLAELRDRIPADADQHERPVIFLC-RSGNRSIGAAEVATE----------AGITPA 108

Query: 143 YLLNGGY 149
           Y +  G+
Sbjct: 109 YNVLDGF 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	100.0
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	100.0
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	100.0
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.97
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.9
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.88
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.87
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.87
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.86
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.85
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.84
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.84
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.84
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.83
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.83
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.83
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.83
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.82
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.82
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.82
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.82
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.81
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.8
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.79
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.79
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.78
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.78
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.78
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.78
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.77
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.77
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.77
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.77
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.76
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.76
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.75
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.73
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.73
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.72
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.72
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.71
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.7
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.69
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.68
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.67
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.66
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.66
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.65
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.64
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.63
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.63
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.63
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.62
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.61
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.59
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.59
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.59
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.57
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.53
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.51
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.48
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.44
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.44
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.06
2f46_A	156	Hypothetical protein; structural genomics, joint c	96.84
1v8c_A	168	MOAD related protein; riken structural genomics/pr	90.48
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	88.71
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	86.89
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	84.21

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=299.06  Aligned_cols=189  Identities=46%  Similarity=0.882  Sum_probs=141.9

Q ss_pred             Cccccc--cCcccccccccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCC
Q psy1013           1 MKILAD--LDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIY   78 (258)
Q Consensus         1 ~~~l~~--~~~~l~gd~s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip   78 (258)
                      +++|++  +++.|||||++++++|++ .+.++.++.||+++|.++++++..+..++++|||||++.||+.||||||+|||
T Consensus        24 ~~~~~~~~~~~~L~gd~~~~~~lp~~-~~~~~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP  102 (216)
T 3op3_A           24 TQMLEEDSNQGHLIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLY  102 (216)
T ss_dssp             ----------CCBCTTSSSBCSSCCC-CCSCSSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECC
T ss_pred             HHHHhccCCCHHHHHHHHHheecccc-cccCCCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECC
Confidence            467866  689999999999999988 77788899999999999998742111137999999999999999999999999


Q ss_pred             CchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccc
Q psy1013          79 TREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQD  158 (258)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~  158 (258)
                      . .+.....+...  .......+++..|||||++||.||+.+++.|+..++..|.||.+||++|++|+||+.+|.+++++
T Consensus       103 ~-~~~l~~~l~~~--~~~~~~~~k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~  179 (216)
T 3op3_A          103 S-QEELFNFFLKK--PIVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYME  179 (216)
T ss_dssp             S-HHHHHHHHTSS--CCCCSSTTSEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGG
T ss_pred             h-HHHHHHHHhhc--cccccccCCCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCcc
Confidence            9 54333222110  00111235566799999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccCCCCCCcccccccccccccCCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccHHHHHHHHhhccc
Q psy1013         159 LCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKT  238 (258)
Q Consensus       159 ~~~~~~~~~~~~~~~ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~~~~~~~~~~~~~  238 (258)
                      +|+                                                    |++|+||+|+.|..||++||++||+
T Consensus       180 lce----------------------------------------------------p~~y~pm~~~~~~~~~~~~~~~~~~  207 (216)
T 3op3_A          180 LCE----------------------------------------------------PQSYCPMHHQDHKTELLRCRSQSKV  207 (216)
T ss_dssp             GEE----------------------------------------------------SSCBCCCCCSSSCCCCBCCC-----
T ss_pred             ccc----------------------------------------------------CCCCCCCCCHHHHHHHHHHHHHhHh
Confidence            998                                                    9999999999999999999999999


Q ss_pred             ccccccc
Q psy1013         239 WSCDYKA  245 (258)
Q Consensus       239 ~~~~~~~  245 (258)
                      |++++..
T Consensus       208 ~~~~~~~  214 (216)
T 3op3_A          208 QEGERQL  214 (216)
T ss_dssp             -------
T ss_pred             hhhhhhh
Confidence            9998764

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=100.00  E-value=4.3e-34  Score=244.77  Aligned_cols=191  Identities=48%  Similarity=0.963  Sum_probs=150.3

Q ss_pred             CccccccCcccccccccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCc
Q psy1013           1 MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTR   80 (258)
Q Consensus         1 ~~~l~~~~~~l~gd~s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~   80 (258)
                      .|+|+++++.|+|+|.+.+.+|++ ......++.|++++|.++++++..+..++++|||||++.||..||||||+|||. 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~-   90 (211)
T 1qb0_A           13 ENLLDSDHRELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL-   90 (211)
T ss_dssp             ------CCSCBCTTSSSBCCSCCB-CCSSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCS-
T ss_pred             HHHhhcCCchhhhhhhhhccchhh-hcccCCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCc-
Confidence            378899999999999999999998 677788999999999999986211111378999999999999999999999999 


Q ss_pred             hhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccc
Q psy1013          81 EHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC  160 (258)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~  160 (258)
                      ..+...++...  ..+...++++.+|||||.++|.||..+++.|+..++..+.++.+||++|++|+||+.+|.+.++.+|
T Consensus        91 ~~l~~~~~~~~--~~l~~~~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~  168 (211)
T 1qb0_A           91 ERDAESFLLKS--PIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFC  168 (211)
T ss_dssp             HHHHHHHHHTT--TCCCSSTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGE
T ss_pred             hHHHHHhhhhh--hhccccCCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCcccc
Confidence            66654432210  0111124666667999998899999999999998888899999999999999999999999888888


Q ss_pred             cCCcccCCCCCCcccccccccccccCCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccHHHHHHHHhhccccc
Q psy1013         161 EGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWS  240 (258)
Q Consensus       161 ~~~~~~~~~~~~~ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~~~~~~~~~~~~~~~  240 (258)
                      +                                                    |++|++|.++.|..+|..||.++|+|+
T Consensus       169 ~----------------------------------------------------~~~y~~~~~~~~~~~l~~~~~~~~~~~  196 (211)
T 1qb0_A          169 E----------------------------------------------------PQDYRPMNHEAFKDELKTFRLKTRSWA  196 (211)
T ss_dssp             E----------------------------------------------------SSCCCCTTCGGGHHHHHHHHTTSSCC-
T ss_pred             C----------------------------------------------------CCCccccCchhhhHHHHHHHHHHhhhh
Confidence            8                                                    999999999999999999999999999


Q ss_pred             ccccccc
Q psy1013         241 CDYKANK  247 (258)
Q Consensus       241 ~~~~~~~  247 (258)
                      +......
T Consensus       197 ~~~~~~~  203 (211)
T 1qb0_A          197 GERSRRE  203 (211)
T ss_dssp             -------
T ss_pred             cccchHH
Confidence            9877653

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=100.00  E-value=1.8e-33  Score=233.49  Aligned_cols=173  Identities=51%  Similarity=1.037  Sum_probs=144.4

Q ss_pred             ccccccccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh
Q psy1013          10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE   89 (258)
Q Consensus        10 ~l~gd~s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~   89 (258)
                      .+|||+++.+.++++ +.....++.||+++|.++++++.....++++|||||++.||+.||||||+|+|. ..+...+..
T Consensus         2 ~~~~~~~~~~~~~~~-~~~~~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~-~~l~~~~~~   79 (175)
T 2a2k_A            2 ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL-ERDAESFLL   79 (175)
T ss_dssp             CBCTTSSSBCCSCCB-CCSSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCS-HHHHHHHHH
T ss_pred             ccccccchhhcchhh-cccCCCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECCh-hHHHHHhhh
Confidence            489999999999998 677788999999999999975211111368999999999999999999999999 666544322


Q ss_pred             hHHHhhcc-ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCC
Q psy1013          90 SKVHAQSN-ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMA  168 (258)
Q Consensus        90 ~~~~~~~~-~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~  168 (258)
                      ..   .+. ..++++.+|||||++++.||..+++.|++.++..+.+..+||++|++|+||+.+|.+.++.+|+       
T Consensus        80 ~~---~~~~~~~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~-------  149 (175)
T 2a2k_A           80 KS---PIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCE-------  149 (175)
T ss_dssp             SS---CCCC----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEE-------
T ss_pred             hh---hhccccCCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccC-------
Confidence            10   111 1246666778899988999999999999988888889999999999999999999998888888       


Q ss_pred             CCCCcccccccccccccCCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccHHHHHHHHhhcccc
Q psy1013         169 DPGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTW  239 (258)
Q Consensus       169 ~~~~~ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~~~~~~~~~~~~~~  239 (258)
                                                                   |++|++|.|+.|..+|.+||.++|+|
T Consensus       150 ---------------------------------------------~~~y~~~~~~~~~~~l~~~~~~~~~~  175 (175)
T 2a2k_A          150 ---------------------------------------------PQDYRPMNHEAFKDELKTFRLKTRSW  175 (175)
T ss_dssp             ---------------------------------------------SSCCCCTTCGGGHHHHHHHHTTSSCC
T ss_pred             ---------------------------------------------CCCccccccHHHHHHHHHHHHHhccC
Confidence                                                         99999999999999999999999999

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.97  E-value=9.8e-32  Score=220.05  Aligned_cols=146  Identities=51%  Similarity=1.051  Sum_probs=120.8

Q ss_pred             cccccccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhh
Q psy1013          11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES   90 (258)
Q Consensus        11 l~gd~s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~   90 (258)
                      |||||++.+.+|++ +.....++.||+++|.++++++..+..++++|||||++.||..||||||+|+|. .++...+...
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~-~~~~~~~~~~   79 (161)
T 1c25_A            2 LIGDFSKGYLFHTV-AGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHM-EEEVEDFLLK   79 (161)
T ss_dssp             BCTTSSSBCSSCCB-CCSCTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCS-HHHHHHHTTT
T ss_pred             ccccCCcceecccc-ccCCCCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCCh-hHHHHHHHhh
Confidence            79999999999998 777788999999999999986211111378999999999999999999999999 6655443221


Q ss_pred             HHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013          91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      .   .....++++.+|||||.+++.||..++..|+..++..|.++.+||++|++|+||+.+|.+.++.+|+
T Consensus        80 ~---~~~~~~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~  147 (161)
T 1c25_A           80 K---PIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCE  147 (161)
T ss_dssp             S---CCCCCTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEE
T ss_pred             h---hhccCCCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccC
Confidence            0   1112345666678999988999999999999999989999999999999999999999999988998

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.90  E-value=2.6e-24  Score=174.78  Aligned_cols=115  Identities=26%  Similarity=0.444  Sum_probs=84.4

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.|++++|.++++++.  ..++++|||||++ ||..||||||+|||+ ..+....+... ...+ ...+ ..+||+|
T Consensus         2 ~~~~~Is~~el~~~l~~~~--~~~~~~lIDvR~~-ey~~gHIpGAinip~-~~l~~~~~~~l-~~~l-~~~~-~~~vV~y   74 (152)
T 2j6p_A            2 TNYTYIKPEELVELLDNPD--SLVKAAVIDCRDS-DRDCGFIVNSINMPT-ISCTEEMYEKL-AKTL-FEEK-KELAVFH   74 (152)
T ss_dssp             -CCEEECHHHHHHHHHSHH--HHHTEEEEECCST-TGGGCBCTTCEECCT-TTCCHHHHHHH-HHHH-HHTT-CCEEEEE
T ss_pred             CCcCccCHHHHHHHHhCCC--CCCCEEEEEcCcH-HhCcCcCCCcEECCh-hHhhHHHHHHH-HHHh-cccC-CCEEEEE
Confidence            3567899999999997510  0016999999999 999999999999999 65543222211 1111 1122 3457889


Q ss_pred             cCCCCCcHHHHH----HHHHHhHHhcccCCCCCC--CCeEEecchHHHHHHhcccccc
Q psy1013         110 CEYSAERGPTLS----RYLRSEDRAHNAYPTLDY--PEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       110 c~~s~~rs~~~a----~~L~~~~r~~n~yp~lGy--~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      |+.++.|+..++    +.|+..          ||  .+|++|+||+.+|...++.+|.
T Consensus        75 C~~sg~rs~~aa~~~~~~L~~~----------G~~~~~v~~L~GG~~~W~~~g~~~~~  122 (152)
T 2j6p_A           75 CAQSLVRAPKGANRFALAQKKL----------GYVLPAVYVLRGGWEAFYHMYGDVRP  122 (152)
T ss_dssp             CSSSSSHHHHHHHHHHHHHHHH----------TCCCSEEEEETTHHHHHHHHHTTTCG
T ss_pred             cCCCCCccHHHHHHHHHHHHHc----------CCCCCCEEEEcCcHHHHHHHcCCCCC
Confidence            955899999888    666666          97  5899999999999998888887

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.88  E-value=1.1e-22  Score=155.49  Aligned_cols=103  Identities=17%  Similarity=0.354  Sum_probs=85.0

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.|+++++.+++++      ++++|||||++.||..||||||+|+|. +.+... +.     .  ++++  ..||+|
T Consensus         2 ~~~~~i~~~~l~~~~~~------~~~~liDvR~~~e~~~ghIpgA~~ip~-~~l~~~-~~-----~--l~~~--~~ivvy   64 (108)
T 1gmx_A            2 DQFECINVADAHQKLQE------KEAVLVDIRDPQSFAMGHAVQAFHLTN-DTLGAF-MR-----D--NDFD--TPVMVM   64 (108)
T ss_dssp             CSCEEECHHHHHHHHHT------TCCEEEECSCHHHHHHCEETTCEECCH-HHHHHH-HH-----H--SCTT--SCEEEE
T ss_pred             CcccccCHHHHHHHHhC------CCCEEEEcCCHHHHHhCCCccCEeCCH-HHHHHH-HH-----h--cCCC--CCEEEE
Confidence            35678999999999986      569999999999999999999999999 665433 22     1  2333  448899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccc
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC  160 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~  160 (258)
                      |. ++.||..+++.|+..          ||++|++|+||+.+|...+|...
T Consensus        65 c~-~g~rs~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~~p~~~  104 (108)
T 1gmx_A           65 CY-HGNSSKGAAQYLLQQ----------GYDVVYSIDGGFEAWQRQFPAEV  104 (108)
T ss_dssp             CS-SSSHHHHHHHHHHHH----------TCSSEEEETTHHHHHHHHCGGGE
T ss_pred             cC-CCchHHHHHHHHHHc----------CCceEEEecCCHHHHHHhCCccc
Confidence            99 888999999999999          99999999999999987654433

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.87  E-value=1.4e-22  Score=154.56  Aligned_cols=96  Identities=20%  Similarity=0.299  Sum_probs=79.8

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ++.||+++|.+++.++     ++++|||||++.||+.||||||+|+|. +++...+ .       .++  +...||+||.
T Consensus         1 ~k~Is~~el~~~l~~~-----~~~~liDvR~~~e~~~ghIpgA~~ip~-~~l~~~~-~-------~l~--~~~~ivv~C~   64 (103)
T 3iwh_A            1 MKSITTDELKNKLLES-----KPVQIVDVRTDEETAMGYIPNAKLIPM-DTIPDNL-N-------SFN--KNEIYYIVCA   64 (103)
T ss_dssp             CCEECHHHHHHGGGSS-----SCCEEEECSCHHHHTTCBCTTCEECCG-GGGGGCG-G-------GCC--TTSEEEEECS
T ss_pred             CCCcCHHHHHHHHhCC-----CCeEEEECCChhHHhcCccCCcccCcc-cchhhhh-h-------hhc--CCCeEEEECC
Confidence            4689999999998875     789999999999999999999999999 6654332 1       123  3445889998


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       +|.||..+++.|+..          ||+ ++.|+||+.+|..+
T Consensus        65 -~G~rS~~aa~~L~~~----------G~~-~~~l~GG~~~W~~~   96 (103)
T 3iwh_A           65 -GGVRSAKVVEYLEAN----------GID-AVNVEGGMHAWGDE   96 (103)
T ss_dssp             -SSSHHHHHHHHHHTT----------TCE-EEEETTHHHHHCSS
T ss_pred             -CCHHHHHHHHHHHHc----------CCC-EEEecChHHHHHHC
Confidence             899999999999999          995 55799999999874

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.87  E-value=2.2e-22  Score=151.95  Aligned_cols=96  Identities=20%  Similarity=0.316  Sum_probs=80.6

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ++.||+++|.+++.+.     ++++|||||++.||..||||||+|+|. +.+...+ .       .+  ++...||+||.
T Consensus         1 ~~~is~~el~~~l~~~-----~~~~liDvR~~~e~~~ghIpgA~~ip~-~~l~~~~-~-------~l--~~~~~ivvyC~   64 (100)
T 3foj_A            1 MESITVTELKEKILDA-----NPVNIVDVRTDQETAMGIIPGAETIPM-NSIPDNL-N-------YF--NDNETYYIICK   64 (100)
T ss_dssp             CCEECHHHHHHGGGSS-----SCCEEEECSCHHHHTTCBCTTCEECCG-GGGGGCG-G-------GS--CTTSEEEEECS
T ss_pred             CCccCHHHHHHHHhcC-----CCcEEEECCCHHHHhcCcCCCCEECCH-HHHHHHH-H-------hC--CCCCcEEEEcC
Confidence            3579999999999654     789999999999999999999999999 6654322 1       12  34455899998


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       ++.||..+++.|+..          || +|++|+||+.+|.+.
T Consensus        65 -~g~rs~~a~~~L~~~----------G~-~v~~l~GG~~~W~~~   96 (100)
T 3foj_A           65 -AGGRSAQVVQYLEQN----------GV-NAVNVEGGMDEFGDE   96 (100)
T ss_dssp             -SSHHHHHHHHHHHTT----------TC-EEEEETTHHHHHCSS
T ss_pred             -CCchHHHHHHHHHHC----------CC-CEEEecccHHHHHHc
Confidence             889999999999999          99 999999999999863

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.85  E-value=9.8e-22  Score=150.61  Aligned_cols=96  Identities=19%  Similarity=0.359  Sum_probs=80.1

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ++.|++++|.++++       . ++|||||++.||+.||||||+|+|. +++...+..        ++  +...||+||.
T Consensus         3 ~~~is~~el~~~l~-------~-~~iiDvR~~~e~~~ghIpgA~~ip~-~~l~~~~~~--------l~--~~~~ivvyC~   63 (108)
T 3gk5_A            3 YRSINAADLYENIK-------A-YTVLDVREPFELIFGSIANSINIPI-SELREKWKI--------LE--RDKKYAVICA   63 (108)
T ss_dssp             CCEECHHHHHHTTT-------T-CEEEECSCHHHHTTCBCTTCEECCH-HHHHHHGGG--------SC--TTSCEEEECS
T ss_pred             ccEeCHHHHHHHHc-------C-CEEEECCCHHHHhcCcCCCCEEcCH-HHHHHHHHh--------CC--CCCeEEEEcC
Confidence            56899999998876       3 8999999999999999999999999 665443211        23  3344889998


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccc
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQD  158 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~  158 (258)
                       +|.||..+++.|+..          || +|++|+||+.+|.+++..
T Consensus        64 -~G~rs~~aa~~L~~~----------G~-~v~~l~GG~~~W~~~~~~   98 (108)
T 3gk5_A           64 -HGNRSAAAVEFLSQL----------GL-NIVDVEGGIQSWIEEGYP   98 (108)
T ss_dssp             -SSHHHHHHHHHHHTT----------TC-CEEEETTHHHHHHHTTCC
T ss_pred             -CCcHHHHHHHHHHHc----------CC-CEEEEcCcHHHHHHcCCC
Confidence             899999999999999          99 999999999999986433

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.84  E-value=4e-21  Score=152.90  Aligned_cols=108  Identities=15%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc-CCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG-GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~-gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ..+..||+++|.++++++    .++++|||||++.||.. ||||||+|+|. ..+..............+  ++...||+
T Consensus        19 ~~~~~is~~~l~~~l~~~----~~~~~liDvR~~~e~~~~ghIpgA~~ip~-~~l~~~~~~~~~~~~~~~--~~~~~ivv   91 (139)
T 2hhg_A           19 SSIETLTTADAIALHKSG----ASDVVIVDIRDPREIERDGKIPGSFSCTR-GMLEFWIDPQSPYAKPIF--QEDKKFVF   91 (139)
T ss_dssp             TTSEEECHHHHHHHHHTT----CTTEEEEECSCHHHHHHHCCCTTCEECCG-GGHHHHHCTTSTTCCGGG--GSSSEEEE
T ss_pred             HhcCccCHHHHHHHHhcc----CCCeEEEECCCHHHHHhCCCCCCeEECCh-HHHHHhcCccchhhhccC--CCCCeEEE
Confidence            456789999999999831    06799999999999999 99999999999 665433211000000011  34456899


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ||. ++.||..+++.|+..          ||.+|++|+||+.+|...
T Consensus        92 yC~-~G~rs~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~  127 (139)
T 2hhg_A           92 YCA-GGLRSALAAKTAQDM----------GLKPVAHIEGGFGAWRDA  127 (139)
T ss_dssp             ECS-SSHHHHHHHHHHHHH----------TCCSEEEETTHHHHHHHT
T ss_pred             ECC-CChHHHHHHHHHHHc----------CCCCeEEecCCHHHHHHC
Confidence            999 789999999999999          999999999999999884

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.1e-21  Score=153.09  Aligned_cols=112  Identities=21%  Similarity=0.358  Sum_probs=85.4

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhh--HHHhhcc-ccCCCceE
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES--KVHAQSN-ATCDKRRV  105 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~--~~~~~~~-~~~~~~~~  105 (258)
                      ...++.||++++.++++++    .++++|||||++.||+.||||||+|+|. ..+.......  .+...+. ...++...
T Consensus        19 ~~~~~~is~~el~~~l~~~----~~~~~liDvR~~~e~~~ghIpgAinip~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~   93 (139)
T 3d1p_A           19 VSNIQSYSFEDMKRIVGKH----DPNVVLVDVREPSEYSIVHIPASINVPY-RSHPDAFALDPLEFEKQIGIPKPDSAKE   93 (139)
T ss_dssp             -CCCEECCHHHHHHHHHHT----CTTEEEEECSCHHHHHHCCCTTCEECCT-TTCTTGGGSCHHHHHHHHSSCCCCTTSE
T ss_pred             CCCcceecHHHHHHHHhCC----CCCeEEEECcCHHHHhCCCCCCcEEcCH-HHhhhhccCCHHHHHHHHhccCCCCCCe
Confidence            3467889999999999742    1579999999999999999999999999 6653322110  1111111 11234456


Q ss_pred             EEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         106 LIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       106 vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      ||+||. +|.||..+++.|+..          ||++|++|+||+.+|....
T Consensus        94 ivvyC~-~G~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~g  133 (139)
T 3d1p_A           94 LIFYCA-SGKRGGEAQKVASSH----------GYSNTSLYPGSMNDWVSHG  133 (139)
T ss_dssp             EEEECS-SSHHHHHHHHHHHTT----------TCCSEEECTTHHHHHHHTT
T ss_pred             EEEECC-CCchHHHHHHHHHHc----------CCCCeEEeCCcHHHHHHcC
Confidence            899999 789999999999999          9999999999999998853

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.84  E-value=2.8e-21  Score=147.52  Aligned_cols=94  Identities=23%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             HHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcH
Q psy1013          38 DTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERG  117 (258)
Q Consensus        38 ~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs  117 (258)
                      ++|.++++.+    .++++|||||++.||..||||||+|+|. +.+......       .+.++  ..||+||. ++.||
T Consensus         1 eel~~~l~~~----~~~~~liDvR~~~e~~~ghIpgAi~ip~-~~l~~~~~~-------~l~~~--~~ivvyc~-~g~rs   65 (106)
T 3hix_A            1 MVLKSRLEWG----EPAFTILDVRDRSTYNDGHIMGAMAMPI-EDLVDRASS-------SLEKS--RDIYVYGA-GDEQT   65 (106)
T ss_dssp             ----------------CCEEEECSCHHHHHTCEETTCEECCG-GGHHHHHHH-------HSCTT--SCEEEECS-SHHHH
T ss_pred             ChHHHHHHcC----CCCeEEEECCCHHHHhcCcCCCCEeCCH-HHHHHHHHh-------cCCCC--CeEEEEEC-CCChH
Confidence            3577777742    1469999999999999999999999999 666544322       12333  34889999 88899


Q ss_pred             HHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         118 PTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       118 ~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      ..+++.|+..          ||++|++|+||+.+|.+++
T Consensus        66 ~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~g   94 (106)
T 3hix_A           66 SQAVNLLRSA----------GFEHVSELKGGLAAWKAIG   94 (106)
T ss_dssp             HHHHHHHHHT----------TCSCEEECTTHHHHHHHTT
T ss_pred             HHHHHHHHHc----------CCcCEEEecCCHHHHHHCC
Confidence            9999999999          9999999999999999864

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.83  E-value=1.1e-20  Score=150.84  Aligned_cols=100  Identities=20%  Similarity=0.379  Sum_probs=83.2

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc-CC--cCCceeCCCchhhhHH-HHhhHHHhhccccCCCceE
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG-GH--IQGALNIYTREHLVKE-FIESKVHAQSNATCDKRRV  105 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~-gH--IpGAvnip~~~~l~~~-~~~~~~~~~~~~~~~~~~~  105 (258)
                      ..+..|+++++.+++++.     ++++|||||++.||.. ||  ||||+|+|. ..+... .+.       .+.  +...
T Consensus        20 ~~~~~is~~el~~~l~~~-----~~~~liDVR~~~E~~~~gh~~IpgAinip~-~~l~~~~~~~-------~l~--~~~~   84 (137)
T 1qxn_A           20 ADMVMLSPKDAYKLLQEN-----PDITLIDVRDPDELKAMGKPDVKNYKHMSR-GKLEPLLAKS-------GLD--PEKP   84 (137)
T ss_dssp             HSSEEECHHHHHHHHHHC-----TTSEEEECCCHHHHHHTCEECCSSEEECCT-TTSHHHHHHH-------CCC--TTSC
T ss_pred             ccCcccCHHHHHHHHhcC-----CCeEEEECCCHHHHHhcCCcCCCCCEEcch-HHhhhHHhhc-------cCC--CCCe
Confidence            346789999999999832     6799999999999999 99  999999999 666432 111       123  3344


Q ss_pred             EEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         106 LIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       106 vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ||+||. +|.||..+++.|+..          ||++|++|+||+.+|...
T Consensus        85 ivvyC~-~G~rS~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  123 (137)
T 1qxn_A           85 VVVFCK-TAARAALAGKTLREY----------GFKTIYNSEGGMDKWLEE  123 (137)
T ss_dssp             EEEECC-SSSCHHHHHHHHHHH----------TCSCEEEESSCHHHHHHT
T ss_pred             EEEEcC-CCcHHHHHHHHHHHc----------CCcceEEEcCcHHHHHHC
Confidence            889999 889999999999999          999999999999999985

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.83  E-value=8.5e-21  Score=152.31  Aligned_cols=97  Identities=24%  Similarity=0.308  Sum_probs=81.0

Q ss_pred             cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013          35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA  114 (258)
Q Consensus        35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  114 (258)
                      ||+++|.+++..+    .++++|||||++.||..||||||+|+|+ ..+......       .+.  +...||+||. ++
T Consensus         2 Is~~el~~~l~~~----~~~~~liDvR~~~e~~~ghIpgAi~ip~-~~l~~~~~~-------~l~--~~~~ivvyC~-~g   66 (141)
T 3ilm_A            2 SDAHVLKSRLEWG----EPAFTILDVRDRSTYNDGHIMGAMAMPI-EDLVDRASS-------SLE--KSRDIYVYGA-GD   66 (141)
T ss_dssp             CCHHHHHHHHHHS----CSCEEEEECSCHHHHHHCEETTCEECCG-GGHHHHHHT-------TSC--TTSEEEEECS-SH
T ss_pred             CCHHHHHHHHhcC----CCCEEEEECCCHHHHhCCCCCCCEEcCH-HHHHHHHHh-------cCC--CCCeEEEEEC-CC
Confidence            8999999999863    0369999999999999999999999999 665443221       122  3345889999 88


Q ss_pred             CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      .||..+++.|+..          ||++|++|+||+.+|.+..
T Consensus        67 ~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~g   98 (141)
T 3ilm_A           67 EQTSQAVNLLRSA----------GFEHVSELKGGLAAWKAIG   98 (141)
T ss_dssp             HHHHHHHHHHHHT----------TCCSEEECTTHHHHHHHTT
T ss_pred             hHHHHHHHHHHHc----------CCCCEEEecCHHHHHHHCC
Confidence            9999999999999          9999999999999999864

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.83  E-value=5.7e-21  Score=154.50  Aligned_cols=116  Identities=26%  Similarity=0.435  Sum_probs=83.8

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh-------hHHHhh--ccccCCCc
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE-------SKVHAQ--SNATCDKR  103 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~-------~~~~~~--~~~~~~~~  103 (258)
                      +.|+++||.++++++    .++++|||||++.||+.||||||+|||+ ..+......       ..+...  .....++.
T Consensus         4 ~~Is~~~l~~~l~~~----~~~~~iiDvR~~~ey~~gHIpgAinip~-~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (153)
T 2vsw_A            4 TQIVTERLVALLESG----TEKVLLIDSRPFVEYNTSHILEAININC-SKLMKRRLQQDKVLITELIQHSAKHKVDIDCS   78 (153)
T ss_dssp             EEECHHHHHHHHTST----TCCEEEEECSCHHHHHHCEETTCEECCC-CHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTT
T ss_pred             ccccHHHHHHHHhcC----CCCEEEEECCCHHHhccCccCCCeeeCh-HHHHHhhhhcCCcCHHHhcCchhhhhhccCCC
Confidence            469999999999741    1579999999999999999999999999 555322111       000000  00112345


Q ss_pred             eEEEEecCCCCCcHHHH------HHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccC
Q psy1013         104 RVLIFHCEYSAERGPTL------SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG  162 (258)
Q Consensus       104 ~~vV~yc~~s~~rs~~~------a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~  162 (258)
                      ..||+||+ ++.++..+      ++.|+.+..        ||.+|++|+||+.+|...++++|++
T Consensus        79 ~~iVvyc~-~g~~s~~a~~~~~~~~~L~~l~~--------G~~~v~~L~GG~~~W~~~~~~~~~~  134 (153)
T 2vsw_A           79 QKVVVYDQ-SSQDVASLSSDCFLTVLLGKLEK--------SFNSVHLLAGGFAEFSRCFPGLCEG  134 (153)
T ss_dssp             SEEEEECS-SCCCGGGSCTTSHHHHHHHHHHH--------HCSCEEEETTHHHHHHHHCGGGEEC
T ss_pred             CeEEEEeC-CCCcccccccchHHHHHHHHHHh--------CCCcEEEEeChHHHHHHhChhhhcC
Confidence            56899999 67776555      577773311        8999999999999999999999984

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.83  E-value=1.7e-21  Score=145.40  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEY  112 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~  112 (258)
                      +.||++++.+++++       +++|||||++.||+.||||||+|+|. +++...+ .       ..  ++ ..||+||. 
T Consensus         2 ~~is~~~l~~~~~~-------~~~liDvR~~~e~~~ghi~gAi~ip~-~~l~~~~-~-------~l--~~-~~ivvyC~-   61 (94)
T 1wv9_A            2 RKVRPEELPALLEE-------GVLVVDVRPADRRSTPLPFAAEWVPL-EKIQKGE-H-------GL--PR-RPLLLVCE-   61 (94)
T ss_dssp             CEECGGGHHHHHHT-------TCEEEECCCC--CCSCCSSCCEECCH-HHHTTTC-C-------CC--CS-SCEEEECS-
T ss_pred             CcCCHHHHHHHHHC-------CCEEEECCCHHHHhcccCCCCEECCH-HHHHHHH-H-------hC--CC-CCEEEEcC-
Confidence            56999999999873       58999999999999999999999999 5543221 1       12  23 55899999 


Q ss_pred             CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         113 SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       113 s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ++.||..+++.|+..          ||+ |++|+||+.+|...
T Consensus        62 ~g~rs~~a~~~L~~~----------G~~-v~~l~GG~~~W~~~   93 (94)
T 1wv9_A           62 KGLLSQVAALYLEAE----------GYE-AMSLEGGLQALTQG   93 (94)
T ss_dssp             SSHHHHHHHHHHHHH----------TCC-EEEETTGGGCC---
T ss_pred             CCChHHHHHHHHHHc----------CCc-EEEEcccHHHHHhC
Confidence            888999999999999          998 99999999999763

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.82  E-value=5.1e-21  Score=149.45  Aligned_cols=112  Identities=19%  Similarity=0.169  Sum_probs=81.8

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh--hHHHhhccccC-----CCceE
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE--SKVHAQSNATC-----DKRRV  105 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~--~~~~~~~~~~~-----~~~~~  105 (258)
                      +.||+++|.+++.++     ++++|||||++.||..||||||+|+|+ ..+......  ..+...+...+     +....
T Consensus         1 ~~is~~el~~~l~~~-----~~~~liDvR~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   74 (127)
T 3i2v_A            1 SRVSVTDYKRLLDSG-----AFHLLLDVRPQVEVDICRLPHALHIPL-KHLERRDAESLKLLKEAIWEEKQGTQEGAAVP   74 (127)
T ss_dssp             CEECHHHHHHHHHHT-----CCCEEEECSCHHHHHHCCCTTSEECCH-HHHHTTCHHHHHHHHHHHHHHHTTC---CCEE
T ss_pred             CCCCHHHHHHHHhCC-----CCeEEEECCCHHHhhheecCCceeCCh-HHHhhhhhhhHHHHHHHHhhhcccccCCCCCe
Confidence            368999999999874     579999999999999999999999999 655322110  00000000001     23346


Q ss_pred             EEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         106 LIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       106 vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ||+||. ++.||..+++.|+....    +..+||.+|++|+||+.+|..+
T Consensus        75 ivv~C~-~G~rs~~a~~~L~~~gg----~~~~G~~~v~~l~GG~~~W~~~  119 (127)
T 3i2v_A           75 IYVICK-LGNDSQKAVKILQSLSA----AQELDPLTVRDVVGGLMAWAAK  119 (127)
T ss_dssp             EEEECS-SSSHHHHHHHHHHHHHH----TTSSSCEEEEEETTHHHHHHHH
T ss_pred             EEEEcC-CCCcHHHHHHHHHHhhc----cccCCCceEEEecCCHHHHHHh
Confidence            899999 89999999999988820    2223588999999999999975

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.82  E-value=2.2e-20  Score=147.41  Aligned_cols=105  Identities=21%  Similarity=0.301  Sum_probs=81.9

Q ss_pred             CCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhh-------HHHHhhHHHhhcccc
Q psy1013          27 GKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLV-------KEFIESKVHAQSNAT   99 (258)
Q Consensus        27 ~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~-------~~~~~~~~~~~~~~~   99 (258)
                      ........||++++.++++.       +++|||||++.||..||||||+|||. ..+.       ..++....   ..++
T Consensus        12 ~~~~~~~~is~~e~~~~l~~-------~~~lIDvR~~~e~~~ghIpgAinip~-~~~~~~~~~~~~~~~~~~~---~~l~   80 (129)
T 1tq1_A           12 EESRVPSSVSVTVAHDLLLA-------GHRYLDVRTPEEFSQGHACGAINVPY-MNRGASGMSKNTDFLEQVS---SHFG   80 (129)
T ss_dssp             CCSCCCEEEEHHHHHHHHHH-------TCCEEEESCHHHHHHCCBTTBEECCS-CCCSTTTCCCTTTHHHHHT---TTCC
T ss_pred             hhcCCCcccCHHHHHHHhcC-------CCEEEECCCHHHHhcCCCCCcEECcH-hhcccccccCCHHHHHHHH---hhCC
Confidence            34566789999999999973       47899999999999999999999998 3221       11111110   0122


Q ss_pred             CCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         100 CDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       100 ~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                        +...||+||. ++.||..+++.|+..          ||++|++|+||+.+|...
T Consensus        81 --~~~~ivvyC~-~G~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  123 (129)
T 1tq1_A           81 --QSDNIIVGCQ-SGGRSIKATTDLLHA----------GFTGVKDIVGGYSAWAKN  123 (129)
T ss_dssp             --TTSSEEEEES-SCSHHHHHHHHHHHH----------HCCSEEEEECCHHHHHHH
T ss_pred             --CCCeEEEECC-CCcHHHHHHHHHHHc----------CCCCeEEeCCcHHHHHhC
Confidence              3344889999 889999999999999          999999999999999874

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.82  E-value=2.1e-20  Score=146.93  Aligned_cols=103  Identities=21%  Similarity=0.306  Sum_probs=75.9

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHH---------------------h
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI---------------------E   89 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~---------------------~   89 (258)
                      .++.|++++|.+   .      ++++|||||++.||..||||||+|+|+ ..+.....                     .
T Consensus         3 ~~~~i~~~el~~---~------~~~~iiDvR~~~e~~~ghIpgA~nip~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (134)
T 3g5j_A            3 AMSVIKIEKALK---L------DKVIFVDVRTEGEYEEDHILNAINMPL-FKNNEHNEVGTIYKMQGKHEAIQKGFDYVS   72 (134)
T ss_dssp             --CEECHHHHTT---C------TTEEEEECSCHHHHHHCCCTTCEECCS-SCHHHHHHHHHHHHHHCHHHHHHHHHHHHG
T ss_pred             CccccCHHHHHh---c------CCcEEEEcCCHHHHhcCCCCCCEEcCc-cchhhhhcccceeeecChhHHHhccccccc
Confidence            467899999876   3      689999999999999999999999999 44321100                     0


Q ss_pred             ---hHHHhhc-cccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          90 ---SKVHAQS-NATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        90 ---~~~~~~~-~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                         ..+...+ ...++ ...||+||..++.||..+++.|+.+          || +|++|+||+.+|.+.
T Consensus        73 ~~~~~~~~~~~~~~~~-~~~ivvyC~~~G~rs~~a~~~L~~~----------G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           73 YKLKDIYLQAAELALN-YDNIVIYCARGGMRSGSIVNLLSSL----------GV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             GGHHHHHHHHHHHHTT-CSEEEEECSSSSHHHHHHHHHHHHT----------TC-CCEEETTHHHHHHHH
T ss_pred             ccHHHHHHHHHHhccC-CCeEEEEECCCChHHHHHHHHHHHc----------CC-ceEEEeCcHHHHHHH
Confidence               0000000 11222 1458899955889999999999999          99 999999999999874

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.82  E-value=3.6e-20  Score=145.14  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhh-ccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-KGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ..|++++|.+++.++    .++++|||||++.|| ..||||||+|||. +.+...+ .       .+.  +...||+||.
T Consensus        15 ~~is~~el~~~l~~~----~~~~~liDvR~~~e~~~~ghIpgA~nip~-~~l~~~~-~-------~l~--~~~~ivvyC~   79 (124)
T 3flh_A           15 LYIDHHTVLADMQNA----TGKYVVLDVRNAPAQVKKDQIKGAIAMPA-KDLATRI-G-------ELD--PAKTYVVYDW   79 (124)
T ss_dssp             TEECHHHHHHHHHHT----CCCEEEEECCCSCHHHHCCEETTCEECCH-HHHHHHG-G-------GSC--TTSEEEEECS
T ss_pred             ceecHHHHHHHHHcC----CCCEEEEECCCHHHHHhcCcCCCCEECCH-HHHHHHH-h-------cCC--CCCeEEEEeC
Confidence            469999999999874    025999999999998 9999999999999 6654332 1       122  3445889999


Q ss_pred             CCCCc--HHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAER--GPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~r--s~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       ++.|  |..+++.|+..          ||+ |++|+||+.+|...
T Consensus        80 -~g~r~~s~~a~~~L~~~----------G~~-v~~l~GG~~~W~~~  113 (124)
T 3flh_A           80 -TGGTTLGKTALLVLLSA----------GFE-AYELAGALEGWKGM  113 (124)
T ss_dssp             -SSSCSHHHHHHHHHHHH----------TCE-EEEETTHHHHHHHT
T ss_pred             -CCCchHHHHHHHHHHHc----------CCe-EEEeCCcHHHHHHc
Confidence             7888  89999999999          996 99999999999984

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.81  E-value=6.9e-20  Score=147.46  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=79.9

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEY  112 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~  112 (258)
                      ..||+++|.+++.++    .++++|||||++.||..||||||+|+|+ ..+....+.       .+  ++...||+||. 
T Consensus        16 ~~is~~el~~~l~~~----~~~~~liDvR~~~ey~~ghIpgAinip~-~~l~~~~~~-------~l--~~~~~ivvyC~-   80 (144)
T 3nhv_A           16 YETDIADLSIDIKKG----YEGIIVVDVRDAEAYKECHIPTAISIPG-NKINEDTTK-------RL--SKEKVIITYCW-   80 (144)
T ss_dssp             TEEEHHHHHHHHHTT----CCSEEEEECSCHHHHHHCBCTTCEECCG-GGCSTTTTT-------TC--CTTSEEEEECS-
T ss_pred             cccCHHHHHHHHHcC----CCCEEEEECcCHHHHhcCCCCCCEECCH-HHHhHHHHh-------hC--CCCCeEEEEEC-
Confidence            358999999999863    1379999999999999999999999999 665422111       12  34456899999 


Q ss_pred             CC--CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         113 SA--ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       113 s~--~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      ++  .||..+++.|+..          || +|++|+||+.+|.+..
T Consensus        81 ~g~~~rs~~aa~~L~~~----------G~-~v~~l~GG~~~W~~~g  115 (144)
T 3nhv_A           81 GPACNGATKAAAKFAQL----------GF-RVKELIGGIEYWRKEN  115 (144)
T ss_dssp             CTTCCHHHHHHHHHHHT----------TC-EEEEEESHHHHHHHTT
T ss_pred             CCCccHHHHHHHHHHHC----------CC-eEEEeCCcHHHHHHCC
Confidence            55  7999999999999          99 6999999999998854

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.80  E-value=6.1e-20  Score=145.50  Aligned_cols=116  Identities=27%  Similarity=0.392  Sum_probs=77.5

Q ss_pred             CccCHHHHHHHHhcccCC--CCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH-HHh-hHH--Hhhcccc----CC-
Q psy1013          33 KNISPDTLARLIRGEFND--VVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE-FIE-SKV--HAQSNAT----CD-  101 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~--~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~-~~~-~~~--~~~~~~~----~~-  101 (258)
                      +.||++||.+++.....+  ..++++|||||++.||+.||||||+|+|. ..+... .+. ...  ...+...    .. 
T Consensus         1 k~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (142)
T 2ouc_A            1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINC-ADKISRRRLQQGKITVLDLISCREGKDSFK   79 (142)
T ss_dssp             CEECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCC-SSHHHHHHHHTTSSCHHHHHHTTSCTTHHH
T ss_pred             CccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCc-cHHHHHHHhhcCCcchhhhCCChhhhHHHh
Confidence            368999999944321000  00578999999999999999999999999 554332 110 100  0000000    00 


Q ss_pred             --CceEEEEecCCCCCcH---------HHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013         102 --KRRVLIFHCEYSAERG---------PTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       102 --~~~~vV~yc~~s~~rs---------~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                        ....||+||. ++.++         ..++..|+..          || +|++|+||+.+|...++++|+
T Consensus        80 ~~~~~~ivvyc~-~g~~~~~~~~~~~~~~~~~~L~~~----------G~-~v~~l~GG~~~w~~~g~~~~~  138 (142)
T 2ouc_A           80 RIFSKEIIVYDE-NTNEPSRVMPSQPLHIVLESLKRE----------GK-EPLVLKGGLSSFKQNHENLCD  138 (142)
T ss_dssp             HHHHSCEEEECS-SCCCGGGCCTTSHHHHHHHHHHHT----------TC-CCEEETTHHHHHTTTCGGGEE
T ss_pred             ccCCCcEEEEEC-CCCchhhcCcccHHHHHHHHHHHc----------CC-cEEEEccCHHHHHHHCHHhhc
Confidence              1345899999 56664         3466777777          99 999999999999999999998

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.79  E-value=1e-19  Score=148.37  Aligned_cols=120  Identities=26%  Similarity=0.370  Sum_probs=82.8

Q ss_pred             CCCCCccCHHHHHHHHhcccCCC--CCCeEEEEecCchhhccCCcCCceeCCCchhhh-HHHHhh-HHH--hhc------
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDV--VDKYLIIDCRYPYEYKGGHIQGALNIYTREHLV-KEFIES-KVH--AQS------   96 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~--~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~-~~~~~~-~~~--~~~------   96 (258)
                      ...++.|++++|.++++....+.  .++++|||||++.||..||||||+|+|. ..+. ...+.. .+.  ..+      
T Consensus         7 ~~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~   85 (158)
T 3tg1_B            7 LASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINC-ADKISRRRLQQGKITVLDLISCREGK   85 (158)
T ss_dssp             ----CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCC-SSHHHHHHHTTSSCCHHHHTCCCCSS
T ss_pred             CCCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeech-hHHHHHhhhhcCcccHHhhcCCHHHH
Confidence            45678899999999998410000  1578999999999999999999999999 6553 211111 000  000      


Q ss_pred             -cccCCCceEEEEecCCCC---------CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013          97 -NATCDKRRVLIFHCEYSA---------ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus        97 -~~~~~~~~~vV~yc~~s~---------~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                       .....+...||+||+ ++         .++..+++.|+..          || +|++|+|||.+|...+|++|.
T Consensus        86 ~~~~~~~~~~IVvyc~-~g~~~~~~~~~~~s~~a~~~L~~~----------G~-~v~~L~GG~~~W~~~~p~~~~  148 (158)
T 3tg1_B           86 DSFKRIFSKEIIVYDE-NTNEPSRVMPSQPLHIVLESLKRE----------GK-EPLVLKGGLSSFKQNHENLCD  148 (158)
T ss_dssp             CSSTTTTTSCEEEECS-CCSCTTSCCSSSHHHHHHHHHHTT----------TC-CEEEETTHHHHHTSSCGGGBC
T ss_pred             HHHhccCCCeEEEEEC-CCCcccccCcchHHHHHHHHHHhC----------CC-cEEEeCCcHHHHHHHhhhhcc
Confidence             001122456899999 55         3588889999988          99 799999999999999999998

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.79  E-value=1.2e-19  Score=146.49  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=80.7

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhH-----------HHHhhH-HHhhccc
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK-----------EFIESK-VHAQSNA   98 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~-----------~~~~~~-~~~~~~~   98 (258)
                      ....|++++|.++++++    .++++|||||++.||+.||||||+|+|+ ..+..           ..++.. ....+ .
T Consensus        14 ~~~~is~~~l~~~l~~~----~~~~~liDvR~~~ey~~gHIpgAinip~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~   87 (154)
T 1hzm_A           14 MAISKTVAWLNEQLELG----NERLLLMDCRPQELYESSHIESAINVAI-PGIMLRRLQKGNLPVRALFTRGEDRDRF-T   87 (154)
T ss_dssp             CSSBSCCCCHHHHHHHC----SSSCEEECCSTTHHHHHHTSSSCCCCCC-SSHHHHTBCCSCCCTTTTSTTSHHHHHH-H
T ss_pred             cccccCHHHHHHHHhCC----CCCEEEEEcCCHHHHhhccccCceEeCc-cHHHHhhhhcCcccHHHhCCCHHHHHHH-h
Confidence            46789999999999862    0279999999999999999999999998 44321           011000 00000 0


Q ss_pred             cCCCceEEEEecCCCCCcH-------HHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccC
Q psy1013          99 TCDKRRVLIFHCEYSAERG-------PTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG  162 (258)
Q Consensus        99 ~~~~~~~vV~yc~~s~~rs-------~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~  162 (258)
                      ..++...||+||. ++.++       ..+++.|+.+..       .||+ |++|+||+.+|...+|++|+.
T Consensus        88 ~~~~~~~iVvyc~-~g~~~~~~~~aa~~~~~~l~~l~~-------~G~~-v~~L~GG~~~W~~~~p~~~~~  149 (154)
T 1hzm_A           88 RRCGTDTVVLYDE-SSSDWNENTGGESLLGLLLKKLKD-------EGCR-AFYLEGGFSKFQAEFSLHCET  149 (154)
T ss_dssp             HSTTSSCEEECCC-SSSSSCSCSSCCSHHHHHHHHHHH-------TTCC-CEECCCCHHHHHHHHCSBCCS
T ss_pred             ccCCCCeEEEEeC-CCCccccccccchHHHHHHHHHHH-------CCCc-eEEEcChHHHHHHHChHhhhc
Confidence            1123345889999 55443       444666664311       1998 999999999999999999984

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.78  E-value=7.6e-20  Score=148.49  Aligned_cols=111  Identities=24%  Similarity=0.351  Sum_probs=82.6

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.|+++++.+++++      ++++|||||++.||+.||||||+|||. ..+...+ ....     ...++...||+|
T Consensus        25 ~~~~~Is~~el~~~l~~------~~~~lIDvR~~~ey~~ghIpgAinip~-~~l~~~~-~~l~-----~~~~~~~~iVvy   91 (152)
T 1t3k_A           25 RSISYITSTQLLPLHRR------PNIAIIDVRDEERNYDGHIAGSLHYAS-GSFDDKI-SHLV-----QNVKDKDTLVFH   91 (152)
T ss_dssp             SSSEEECTTTTTTCCCC------TTEEEEEESCSHHHHSSCCCSSEEECC-SSSSTTH-HHHH-----HTCCSCCEEEES
T ss_pred             CCCceECHHHHHHHhcC------CCEEEEECCChhhccCccCCCCEECCH-HHHHHHH-HHHH-----HhcCCCCEEEEE
Confidence            45678999999888764      679999999999999999999999999 6654322 1110     011344558999


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      |..++.|+..++..|.....  ..+..+||++|++|+||+.+|.+.
T Consensus        92 C~~~G~rs~~aa~~L~~~l~--~~L~~~G~~~V~~L~GG~~~W~~~  135 (152)
T 1t3k_A           92 SALSQVRGPTCARRLVNYLD--EKKEDTGIKNIMILERGFNGWEAS  135 (152)
T ss_dssp             SSCCSSSHHHHHHHHHHHHH--HSSSCCCSSEEEEESSTTHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHH--HHHHhcCCCcEEEEcCCHHHHHHc
Confidence            99788999999988764100  001223999999999999999885

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.78  E-value=2.4e-19  Score=157.59  Aligned_cols=152  Identities=16%  Similarity=0.168  Sum_probs=101.0

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH------------HHhhHHHhhccccC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE------------FIESKVHAQSNATC  100 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~------------~~~~~~~~~~~~~~  100 (258)
                      ..||++||.+++++      ++++|||||++.||..||||||+|+|+ ..+...            .+...+. .+..  
T Consensus         9 ~~is~~~l~~~l~~------~~~~iiDvR~~~ey~~ghIpgA~~ip~-~~l~~~~~~~~~~~~~~~~~~~~~~-~~gi--   78 (271)
T 1e0c_A            9 LVIEPADLQARLSA------PELILVDLTSAARYAEGHIPGARFVDP-KRTQLGQPPAPGLQPPREQLESLFG-ELGH--   78 (271)
T ss_dssp             SEECHHHHHTTTTC------TTEEEEECSCHHHHHHCBSTTCEECCG-GGGSCCCTTCTTSCCCHHHHHHHHH-HHTC--
T ss_pred             ceeeHHHHHHhccC------CCeEEEEcCCcchhhhCcCCCCEECCH-HHhccCCCCCCCCCCCHHHHHHHHH-HcCC--
Confidence            46999999999875      679999999999999999999999999 554221            1111111 1112  


Q ss_pred             CCceEEEEecCCCCC-cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCccccccc
Q psy1013         101 DKRRVLIFHCEYSAE-RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRS  179 (258)
Q Consensus       101 ~~~~~vV~yc~~s~~-rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~~re  179 (258)
                      ++...||+||. ++. ++.++++.|+..          ||++|++|+||+.+|.........+ ...+....|.......
T Consensus        79 ~~~~~vvvyc~-~g~~~s~~a~~~L~~~----------G~~~v~~L~GG~~~w~~~g~p~~~~-~~~~~~~~~~~~~~~~  146 (271)
T 1e0c_A           79 RPEAVYVVYDD-EGGGWAGRFIWLLDVI----------GQQRYHYLNGGLTAWLAEDRPLSRE-LPAPAGGPVALSLHDE  146 (271)
T ss_dssp             CTTCEEEEECS-SSSHHHHHHHHHHHHT----------TCCCEEEETTHHHHHHHTTCCCBCC-CCCCCCSCCCCCCCST
T ss_pred             CCCCeEEEEcC-CCCccHHHHHHHHHHc----------CCCCeEEecCCHHHHHHcCCCccCC-CCCCCCCCccccCCcc
Confidence            34556899999 555 999999999999          9999999999999998864333321 2222223444332222


Q ss_pred             cccccc-CCCCCCCCceeeechhhHHHH
Q psy1013         180 EDRAHN-AYPTLDYPEMYLLNGGYKQFY  206 (258)
Q Consensus       180 ~dr~~n-~~p~l~ype~~~ld~g~~~~~  206 (258)
                      ...... ....+..+++.+||.--..-|
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~  174 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEY  174 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHH
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhc
Confidence            211211 223344567888888755433

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.78  E-value=4.1e-19  Score=146.80  Aligned_cols=123  Identities=22%  Similarity=0.424  Sum_probs=83.7

Q ss_pred             CCCCCCccCHHHHHHHHhcccC-CCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHH--HhhHHHh--hccccCCC
Q psy1013          28 KHHDLKNISPDTLARLIRGEFN-DVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF--IESKVHA--QSNATCDK  102 (258)
Q Consensus        28 ~~~~~~~Is~~~L~~~l~~~~~-~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~--~~~~~~~--~~~~~~~~  102 (258)
                      +...++.||+++|.++++++.. ...++++|||||+ .||..||||||+|||. ..+....  +......  ........
T Consensus        26 ~~~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~-~~l~~~~~~l~~l~~~~~~~~~~~~~  103 (169)
T 3f4a_A           26 SITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAY-SRLKQDPEYLRELKHRLLEKQADGRG  103 (169)
T ss_dssp             CCCSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCH-HHHHHCHHHHHHHHHHHHHHHHTSSS
T ss_pred             ccCCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCH-HHhhcccccHHHHHHHHHhhcccccC
Confidence            3456789999999999986410 0113599999999 9999999999999999 6654320  1111000  00011112


Q ss_pred             ceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCC--CCCeEEecchHHHHHHhccc
Q psy1013         103 RRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD--YPEMYLLNGGYKQFYAQHQD  158 (258)
Q Consensus       103 ~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lG--y~~V~iL~GG~~~w~~~~~~  158 (258)
                      ...|||||..++.||+.+|..|......      .|  +.+|++|+||+.+|.+.++.
T Consensus       104 ~~~IVvyC~sG~~Rs~~aa~~l~~~L~~------~G~~~~~V~~L~GG~~aW~~~~~~  155 (169)
T 3f4a_A          104 ALNVIFHCMLSQQRGPSAAMLLLRSLDT------AELSRCRLWVLRGGFSRWQSVYGD  155 (169)
T ss_dssp             CEEEEEECSSSSSHHHHHHHHHHHTCCH------HHHTTEEEEEETTHHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCCCCCEEEECCCHHHHHHHcCC
Confidence            3568999995569999998776543110      05  67999999999999987543

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.78  E-value=5.1e-19  Score=156.03  Aligned_cols=107  Identities=20%  Similarity=0.381  Sum_probs=85.7

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ....+.||++++.+++++      ++++|||||++.||+.||||||+|+|+ ..+.. +. ..+...+...  +...||+
T Consensus       118 ~~~~~~Is~~el~~ll~~------~~~vlIDVR~~~Ey~~GHIpGAiniP~-~~~~~-~~-~~l~~~l~~~--kdk~IVv  186 (265)
T 4f67_A          118 YNAGTYLSPEEWHQFIQD------PNVILLDTRNDYEYELGTFKNAINPDI-ENFRE-FP-DYVQRNLIDK--KDKKIAM  186 (265)
T ss_dssp             TCTTCEECHHHHHHHTTC------TTSEEEECSCHHHHHHEEETTCBCCCC-SSGGG-HH-HHHHHHTGGG--TTSCEEE
T ss_pred             cCCCceECHHHHHHHhcC------CCeEEEEeCCchHhhcCcCCCCEeCCH-HHHHh-hH-HHHHHhhhhC--CCCeEEE
Confidence            345688999999999986      689999999999999999999999999 55532 11 1111111122  3344889


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ  157 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~  157 (258)
                      ||. +|.||..+++.|+..          ||++|++|+||+.+|.++.+
T Consensus       187 yC~-~G~RS~~Aa~~L~~~----------Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          187 FCT-GGIRCEKTTAYMKEL----------GFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             ECS-SSHHHHHHHHHHHHH----------TCSSEEEETTHHHHHHHHSC
T ss_pred             EeC-CChHHHHHHHHHHHc----------CCCCEEEecCHHHHHHHhcC
Confidence            999 899999999999999          99999999999999998754

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.77  E-value=4.1e-19  Score=144.71  Aligned_cols=125  Identities=16%  Similarity=0.224  Sum_probs=81.4

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH----HHhhHH---HhhccccCC
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE----FIESKV---HAQSNATCD  101 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~----~~~~~~---~~~~~~~~~  101 (258)
                      ......|++++|.+++++.    .++++|||||++.||+.||||||+|||. ..+...    .+...+   .+.+.....
T Consensus        11 ~~~~~~i~~~~l~~~l~~~----~~~~~liDvR~~~ey~~gHI~gainip~-~~~~~~~~~~~l~~~lp~~~~~~~~~~~   85 (157)
T 1whb_A           11 TKEKGAITAKELYTMMTDK----NISLIIMDARRMQDYQDSCILHSLSVPE-EAISPGVTASWIEAHLPDDSKDTWKKRG   85 (157)
T ss_dssp             CCCCSEECHHHHHHHHTCS----SSCEEEEEESCHHHHHHCCBTTCEEECS-SSCCTTCCHHHHHHSCCTTHHHHHHGGG
T ss_pred             cccCCccCHHHHHHHHhcC----CCCeEEEECCCHHHHHhccccCCcccCH-HHccCCCcHHHHHHHCChHHHHHHHhcC
Confidence            4567889999999999862    0279999999999999999999999998 444211    011000   000000111


Q ss_pred             CceEEEEecCCCCC---cHHHHHHHHHHhHHhcccCC-CCCCC-CeEEecchHHHHHHhcccccc
Q psy1013         102 KRRVLIFHCEYSAE---RGPTLSRYLRSEDRAHNAYP-TLDYP-EMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       102 ~~~~vV~yc~~s~~---rs~~~a~~L~~~~r~~n~yp-~lGy~-~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      ...+||+||+.++.   ++..+++.|...   +..+. ..||. +|++|+|||.+|...+|..|+
T Consensus        86 ~~~~VVvy~~~~~~~~~~a~~~~~~L~~~---L~~~~~~~~~~~~V~~L~GG~~aW~~~~p~~~~  147 (157)
T 1whb_A           86 NVEYVVLLDWFSSAKDLQIGTTLRSLKDA---LFKWESKTVLRNEPLVLEGGYENWLLCYPQYTT  147 (157)
T ss_dssp             TSSEEEEECSSCCGGGCCTTCHHHHHHHT---TTTTCSSCCCSSCCEEESSCHHHHHHHCGGGBS
T ss_pred             CCCEEEEECCCCCccccccccHHHHHHHH---HHHhccccccCCCeEEEcchHHHHHHHChhhhC
Confidence            33468899996544   234445555533   11111 01343 499999999999999999998

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.77  E-value=6.4e-19  Score=143.74  Aligned_cols=125  Identities=16%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH----HHhhH---HHhhccccCCC
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE----FIESK---VHAQSNATCDK  102 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~----~~~~~---~~~~~~~~~~~  102 (258)
                      .....|++++|.+++++.    .++++|||||++.||+.||||||+|||. +.+...    .+...   ..+.+......
T Consensus        17 ~~~~~is~~~l~~~l~~~----~~~~~liDvR~~~ey~~gHI~gAinip~-~~l~~~~~~~~l~~~lp~~~~~l~~~~~~   91 (157)
T 2gwf_A           17 RGSGAITAKELYTMMTDK----NISLIIMDARRMQDYQDSCILHSLSVPE-EAISPGVTASWIEAHLPDDSKDTWKKRGN   91 (157)
T ss_dssp             --CCEECHHHHHHHHHST----TSCEEEEECSCHHHHHHSCBTTCEECCG-GGCCTTCCHHHHHHTSCHHHHHHHHTTTT
T ss_pred             CCCCccCHHHHHHHHhcC----CCCeEEEECCCHHHHHhcCccCCcccCH-HHcCCCCcHHHHHHHcCHHHHHHHHhcCC
Confidence            456789999999999862    0279999999999999999999999998 544211    01100   00111111223


Q ss_pred             ceEEEEecCCCCC---cHHHHHHHHHHhHHhcccCCCCCCC-CeEEecchHHHHHHhcccccc
Q psy1013         103 RRVLIFHCEYSAE---RGPTLSRYLRSEDRAHNAYPTLDYP-EMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       103 ~~~vV~yc~~s~~---rs~~~a~~L~~~~r~~n~yp~lGy~-~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      ..+||+||..++.   ++..+++.|.......+.  ..||. +|++|+|||.+|...+|..|+
T Consensus        92 ~~~VVvy~~~~~~~~~~a~~~l~~L~~~L~~~~~--~~~~~~~V~~L~GG~~aW~~~~p~~~~  152 (157)
T 2gwf_A           92 VEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWES--KTVLRNEPLVLEGGYENWLLCYPQYTT  152 (157)
T ss_dssp             SSEEEEECSSCCGGGCCTTCHHHHHHHHHHTSCC--SSCCSSCCEEETTHHHHHHHHCGGGBS
T ss_pred             CCEEEEEcCCCCccccCcccHHHHHHHHHHhhcc--ccccCCceEEEccHHHHHHHHChhhcC
Confidence            4568899995543   234455555533111100  01343 499999999999999999998

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.77  E-value=4.4e-20  Score=141.76  Aligned_cols=93  Identities=20%  Similarity=0.290  Sum_probs=74.2

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE  111 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~  111 (258)
                      ...||+++|    .+      ++++|||||++.||..||||||+|+|+ ..+...+..      ....  +...||+||.
T Consensus         4 ~~~is~~el----~~------~~~~liDvR~~~e~~~ghIpgAi~ip~-~~l~~~~~~------~~~~--~~~~ivvyC~   64 (110)
T 2k0z_A            4 DYAISLEEV----NF------NDFIVVDVRELDEYEELHLPNATLISV-NDQEKLADF------LSQH--KDKKVLLHCR   64 (110)
T ss_dssp             TTEEETTTC----CG------GGSEEEEEECHHHHHHSBCTTEEEEET-TCHHHHHHH------HHSC--SSSCEEEECS
T ss_pred             eeeeCHHHh----cc------CCeEEEECCCHHHHhcCcCCCCEEcCH-HHHHHHHHh------cccC--CCCEEEEEeC
Confidence            345777776    22      679999999999999999999999999 666443221      1123  3344889998


Q ss_pred             CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       ++.||..+++.|+..          ||++ ++|+||+.+|...
T Consensus        65 -~G~rs~~aa~~L~~~----------G~~~-~~l~GG~~~W~~~   96 (110)
T 2k0z_A           65 -AGRRALDAAKSMHEL----------GYTP-YYLEGNVYDFEKY   96 (110)
T ss_dssp             -SSHHHHHHHHHHHHT----------TCCC-EEEESCGGGTTTT
T ss_pred             -CCchHHHHHHHHHHC----------CCCE-EEecCCHHHHHHC
Confidence             889999999999999          9999 9999999999874

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.77  E-value=2.1e-19  Score=131.47  Aligned_cols=80  Identities=25%  Similarity=0.380  Sum_probs=65.7

Q ss_pred             CeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhccc
Q psy1013          54 KYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA  133 (258)
Q Consensus        54 ~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~  133 (258)
                      +++|||||++.||+.||||||+|+|. +++...+ ..       ...++...||+||. ++.||..+++.|+..      
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~-~~l~~~~-~~-------l~~~~~~~ivv~C~-~g~rs~~aa~~L~~~------   64 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPL-KEVKERI-AT-------AVPDKNDTVKVYCN-AGRQSGQAKEILSEM------   64 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCH-HHHHHHH-HH-------HCCCTTSEEEEEES-SSHHHHHHHHHHHHT------
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCH-HHHHHHH-HH-------hCCCCCCcEEEEcC-CCchHHHHHHHHHHc------
Confidence            46899999999999999999999999 6654332 21       11234456899999 889999999999999      


Q ss_pred             CCCCCCCCeEEecchHHHHHH
Q psy1013         134 YPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       134 yp~lGy~~V~iL~GG~~~w~~  154 (258)
                          ||++|++| ||+.+|..
T Consensus        65 ----G~~~v~~l-GG~~~w~~   80 (85)
T 2jtq_A           65 ----GYTHVENA-GGLKDIAM   80 (85)
T ss_dssp             ----TCSSEEEE-EETTTCCS
T ss_pred             ----CCCCEEec-cCHHHHhc
Confidence                99999999 99999954

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.76  E-value=5.1e-19  Score=142.59  Aligned_cols=106  Identities=14%  Similarity=0.250  Sum_probs=78.2

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc-CCc------CCceeCCCchhhh----HHHHhhHHHhhcc-cc
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG-GHI------QGALNIYTREHLV----KEFIESKVHAQSN-AT   99 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~-gHI------pGAvnip~~~~l~----~~~~~~~~~~~~~-~~   99 (258)
                      .+.||++++.++++++     ++++|||||++.||.. |||      |||+|+|+ .+..    ..+.. .+...+. ..
T Consensus         4 ~~~is~~el~~~l~~~-----~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~-~~~~~~~~~~~~~-~l~~~l~~~~   76 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDN-----PRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEW-ATSDGTHNDNFLA-ELRDRIPADA   76 (148)
T ss_dssp             SEEECHHHHHHHHHHC-----TTCEEEECSCHHHHHHTCEECCGGGTCCCEECCS-BCTTSCBCTTHHH-HHHHHCC---
T ss_pred             cccCCHHHHHHHHhcC-----CCeEEEECCCHHHHHhcCCCccccCCCCcEEeee-eccccccCHHHHH-HHHHHHhhcc
Confidence            4579999999999853     5799999999999997 999      99999999 4410    01111 1111110 00


Q ss_pred             CCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         100 CDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       100 ~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      .++...||+||. +|.||..+++.|+..          ||++|++|+||+.+|...
T Consensus        77 ~~~~~~ivvyC~-~G~rS~~aa~~L~~~----------G~~~v~~l~GG~~~w~~~  121 (148)
T 2fsx_A           77 DQHERPVIFLCR-SGNRSIGAAEVATEA----------GITPAYNVLDGFEGHLDA  121 (148)
T ss_dssp             ----CCEEEECS-SSSTHHHHHHHHHHT----------TCCSEEEETTTTTCCCCT
T ss_pred             CCCCCEEEEEcC-CChhHHHHHHHHHHc----------CCcceEEEcCChhhhhhh
Confidence            133445899999 889999999999999          999999999999877654

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.6e-18  Score=155.33  Aligned_cols=157  Identities=13%  Similarity=0.156  Sum_probs=101.5

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEec---------CchhhccCCcCCceeCCCchhhh------------HHHHhhH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCR---------YPYEYKGGHIQGALNIYTREHLV------------KEFIESK   91 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR---------~~~Ey~~gHIpGAvnip~~~~l~------------~~~~~~~   91 (258)
                      ..||++||.+++.++.  ..++++|||||         ++.||..||||||+|+|+ +.+.            ...+...
T Consensus        22 ~lIs~~~l~~~l~~~~--~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~-~~~~~~~~~~~~~lp~~~~~~~~   98 (302)
T 3olh_A           22 SMVSAQWVAEALRAPR--AGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDI-DQCSDRTSPYDHMLPGAEHFAEY   98 (302)
T ss_dssp             CEECHHHHHHHHHCCC--SSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCT-TTSSCSSCSSSSCCCCHHHHHHH
T ss_pred             CccCHHHHHHHhcCcC--CCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCH-HHhcCcCCCCCCCCCCHHHHHHH
Confidence            5699999999998620  01379999999         788999999999999987 4321            1111111


Q ss_pred             HHhhccccCCCceEEEEecCC--CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCC
Q psy1013          92 VHAQSNATCDKRRVLIFHCEY--SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMAD  169 (258)
Q Consensus        92 ~~~~~~~~~~~~~~vV~yc~~--s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~  169 (258)
                      +. .+.+  ++...||+||..  ++.++.+++|.|+.+          ||++|++|+||+.+|..+......+ ......
T Consensus        99 ~~-~lgi--~~~~~VVvyc~~~~g~~~a~ra~~~L~~~----------G~~~V~~L~GG~~~W~~~g~p~~~~-~~~~~~  164 (302)
T 3olh_A           99 AG-RLGV--GAATHVVIYDASDQGLYSAPRVWWMFRAF----------GHHAVSLLDGGLRHWLRQNLPLSSG-KSQPAP  164 (302)
T ss_dssp             HH-HTTC--CSSCEEEEECCCTTSCSSHHHHHHHHHHT----------TCCCEEEETTHHHHHHHSCCC-CCS-CCCCCC
T ss_pred             HH-HcCC--CCCCEEEEEeCCCCCcchHHHHHHHHHHc----------CCCcEEECCCCHHHHHHcCCCcccC-CCCcCc
Confidence            11 1122  345568999963  456799999999999          9999999999999999864333331 122223


Q ss_pred             CCCccccccccccccc-CCCCCCCCceeeechhhHHHH
Q psy1013         170 PGYKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQFY  206 (258)
Q Consensus       170 ~~~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~~~  206 (258)
                      ..|..+...+...... ....+..+++.|||.--..-|
T Consensus       165 ~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef  202 (302)
T 3olh_A          165 AEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRF  202 (302)
T ss_dssp             CCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHH
T ss_pred             CccccccCccceecHHHHHHhhcCCCcEEEecCCHHHc
Confidence            3455554444433332 222333456778887755433

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.75  E-value=1.6e-18  Score=153.17  Aligned_cols=152  Identities=20%  Similarity=0.222  Sum_probs=98.8

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEec----------CchhhccCCcCCceeCCCchhhhH------------HHHhh
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCR----------YPYEYKGGHIQGALNIYTREHLVK------------EFIES   90 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR----------~~~Ey~~gHIpGAvnip~~~~l~~------------~~~~~   90 (258)
                      ..||++||.+++++      ++++|||||          ++.||..||||||+|+|+ ..+..            ..+..
T Consensus         4 ~~is~~~l~~~l~~------~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~-~~l~~~~~~~~~~~~~~~~~~~   76 (280)
T 1urh_A            4 WFVGADWLAEHIDD------PEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDI-EALSDHTSPLPHMLPRPETFAV   76 (280)
T ss_dssp             CEECHHHHHTTTTC------TTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCG-GGGSCSSSSSSSCCCCHHHHHH
T ss_pred             ceeeHHHHHHhcCC------CCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCH-HHhcCCCCCCCCCCCCHHHHHH
Confidence            46999999999876      679999999          678999999999999999 54421            11111


Q ss_pred             HHHhhccccCCCceEEEEecCCCCCc-HHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCC
Q psy1013          91 KVHAQSNATCDKRRVLIFHCEYSAER-GPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMAD  169 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~vV~yc~~s~~r-s~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~  169 (258)
                      .+. .+.+  ++...||+||. ++.+ +.++++.|+.+          ||++|++|+||+.+|....-....+ ...+..
T Consensus        77 ~~~-~~gi--~~~~~ivvyc~-~g~~~a~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~g~p~~~~-~~~~~~  141 (280)
T 1urh_A           77 AMR-ELGV--NQDKHLIVYDE-GNLFSAPRAWWMLRTF----------GVEKVSILGGGLAGWQRDDLLLEEG-AVELPE  141 (280)
T ss_dssp             HHH-HTTC--CTTSEEEEECS-SSCSSHHHHHHHHHHT----------TCSCEEEETTHHHHHHHTTCCCBBS-CCCCCC
T ss_pred             HHH-HcCC--CCCCeEEEECC-CCCccHHHHHHHHHHc----------CCCCEEEecCCHHHHHHCCCcccCC-CCCCCC
Confidence            111 1112  34556899999 6777 99999999999          9999999999999998853222221 222222


Q ss_pred             CCCccccccccccccc-CCCCCCCCceeeechhhHHHH
Q psy1013         170 PGYKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQFY  206 (258)
Q Consensus       170 ~~~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~~~  206 (258)
                      ..|..........+.. ....+..+++.+||.--..-|
T Consensus       142 ~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~  179 (280)
T 1urh_A          142 GEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARF  179 (280)
T ss_dssp             CCCCCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHH
T ss_pred             CccccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhc
Confidence            3454443333322221 122222345677777655433

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.73  E-value=3.1e-18  Score=164.85  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      .++.||++||.+++.++     ++++|||||++.||..||||||+|+|. +.+...+ ..     +  ..++...||+||
T Consensus         5 ~~~~is~~~l~~~l~~~-----~~~~liDvR~~~e~~~ghIpgAv~ip~-~~~~~~~-~~-----l--~~~~~~~iVvyc   70 (539)
T 1yt8_A            5 QIAVRTFHDIRAALLAR-----RELALLDVREEDPFAQAHPLFAANLPL-SRLELEI-HA-----R--VPRRDTPITVYD   70 (539)
T ss_dssp             -CEEECHHHHHHHHHHT-----CCBEEEECSCHHHHTTSBCTTCEECCG-GGHHHHH-HH-----H--SCCTTSCEEEEC
T ss_pred             cCcccCHHHHHHHHhCC-----CCeEEEECCCHHHHhcCcCCCCEECCH-HHHHHHH-Hh-----h--CCCCCCeEEEEE
Confidence            46789999999999864     579999999999999999999999999 6654332 21     1  123445589999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      . ++.++.++++.|+.+          ||++|++|+||+.+|.+..
T Consensus        71 ~-~g~~s~~a~~~L~~~----------G~~~V~~L~GG~~~W~~~g  105 (539)
T 1yt8_A           71 D-GEGLAPVAAQRLHDL----------GYSDVALLDGGLSGWRNAG  105 (539)
T ss_dssp             S-SSSHHHHHHHHHHHT----------TCSSEEEETTHHHHHHHTT
T ss_pred             C-CCChHHHHHHHHHHc----------CCCceEEeCCCHHHHHhcC
Confidence            9 677999999999999          9999999999999999853

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.73  E-value=1.1e-17  Score=151.10  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchh-hccCCcCCceeCCCchhhhH----------HHHhhHHHhhccccC
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYE-YKGGHIQGALNIYTREHLVK----------EFIESKVHAQSNATC  100 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~E-y~~gHIpGAvnip~~~~l~~----------~~~~~~~~~~~~~~~  100 (258)
                      ...||++||.+++++      ++++|||||++.| |..||||||+|+|+ .....          ..+...+. .+.+  
T Consensus        39 ~~~is~~~l~~~l~~------~~~~iiDvR~~~e~y~~gHIpGAi~ip~-~~~~~~~~~~~~~~~~~~~~~l~-~lgi--  108 (318)
T 3hzu_A           39 ERLVTADWLSAHMGA------PGLAIVESDEDVLLYDVGHIPGAVKIDW-HTDLNDPRVRDYINGEQFAELMD-RKGI--  108 (318)
T ss_dssp             GGEECHHHHHHHTTC------TTEEEEECCSSTTSGGGCBCTTEEECCH-HHHHBCSSSSSBCCHHHHHHHHH-HTTC--
T ss_pred             CceecHHHHHHhccC------CCEEEEECCCChhHHhcCcCCCCeEeCc-hhhhccCcccCCCCHHHHHHHHH-HcCC--
Confidence            346999999999976      6799999999887 99999999999997 32111          11111111 1112  


Q ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         101 DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       101 ~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      ++...||+||..++.++.++++.|+.+          ||++|++|+||+.+|.+..
T Consensus       109 ~~~~~vVvyc~~g~~~a~~a~~~L~~~----------G~~~V~~L~GG~~~W~~~g  154 (318)
T 3hzu_A          109 ARDDTVVIYGDKSNWWAAYALWVFTLF----------GHADVRLLNGGRDLWLAER  154 (318)
T ss_dssp             CTTCEEEEECSGGGHHHHHHHHHHHHT----------TCSCEEEETTHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCccHHHHHHHHHHc----------CCCceEEccCCHHHHhhcC
Confidence            345568999994334899999999999          9999999999999999864

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.72  E-value=1.5e-17  Score=131.86  Aligned_cols=104  Identities=11%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc-CCc------CCceeCCCchhhh-HHHHhhHHHhhccccCCCc
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG-GHI------QGALNIYTREHLV-KEFIESKVHAQSNATCDKR  103 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~-gHI------pGAvnip~~~~l~-~~~~~~~~~~~~~~~~~~~  103 (258)
                      ...||++++.+++...     ++++|||||++.||+. +|+      |||+|||+ ..+. ..+.. .+...  ...++.
T Consensus         4 ~~~is~~e~~~~l~~~-----~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~-~~~~~~~~~~-~l~~~--~~~~~~   74 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTD-----DNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVY-NGEDKPGFLK-KLSLK--FKDPEN   74 (134)
T ss_dssp             SCBCCHHHHHHHHHHC-----TTEEEEECSCHHHHHHTCEECCTTTSCCCEECCC-CGGGHHHHHH-HHHTT--CSCGGG
T ss_pred             CCccCHHHHHHHHHhC-----CCeEEEEcCCHHHHhhcCCCcccccCCceEEeec-ccccChhHHH-HHHHH--hCCCCC
Confidence            4579999999999843     6799999999999985 444      79999999 5542 22222 11111  111344


Q ss_pred             eEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchH---HHHHHh
Q psy1013         104 RVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGY---KQFYAQ  155 (258)
Q Consensus       104 ~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~---~~w~~~  155 (258)
                      ..||+||. ++.||..++..|+.+          ||.+|++|.||+   .+|.+.
T Consensus        75 ~~ivv~C~-sG~RS~~aa~~L~~~----------G~~~v~~l~GG~~~~~~W~~~  118 (134)
T 1vee_A           75 TTLYILDK-FDGNSELVAELVALN----------GFKSAYAIKDGAEGPRGWLNS  118 (134)
T ss_dssp             CEEEEECS-SSTTHHHHHHHHHHH----------TCSEEEECTTTTTSTTSSGGG
T ss_pred             CEEEEEeC-CCCcHHHHHHHHHHc----------CCcceEEecCCccCCcchhhc
Confidence            56899999 899999999999999          999999999999   789875

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.72  E-value=1.6e-17  Score=148.02  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=97.6

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEec--------CchhhccCCcCCceeCCCchhhhHH------------HHhhHH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCR--------YPYEYKGGHIQGALNIYTREHLVKE------------FIESKV   92 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR--------~~~Ey~~gHIpGAvnip~~~~l~~~------------~~~~~~   92 (258)
                      ..||++||.++++++.  ..++++|||||        ++.||..||||||+|+|. ..+...            .+...+
T Consensus         8 ~~is~~~l~~~l~~~~--~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~-~~l~~~~~~~~~~lp~~~~~~~~l   84 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGK--VGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDI-EECRDKASPYEVMLPSEAGFADYV   84 (296)
T ss_dssp             SEECHHHHHHHHHTTC--CBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCT-TTSSCTTSSSSSCCCCHHHHHHHH
T ss_pred             ceeeHHHHHHHHhccc--cCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCH-HHhcCCCCCCCCCCCCHHHHHHHH
Confidence            4799999999997510  00479999999        578999999999999999 544211            111111


Q ss_pred             HhhccccCCCceEEEEecCCC-CCc-HHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCC
Q psy1013          93 HAQSNATCDKRRVLIFHCEYS-AER-GPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADP  170 (258)
Q Consensus        93 ~~~~~~~~~~~~~vV~yc~~s-~~r-s~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~  170 (258)
                      . .+.+  ++...||+||... +.+ +.++++.|+.+          ||++|++|+||+.+|.........+ .......
T Consensus        85 ~-~lgi--~~~~~vVvyc~~~~g~~~a~~a~~~L~~~----------G~~~V~~L~GG~~~W~~~g~p~~~~-~~~~~~~  150 (296)
T 1rhs_A           85 G-SLGI--SNDTHVVVYDGDDLGSFYAPRVWWMFRVF----------GHRTVSVLNGGFRNWLKEGHPVTSE-PSRPEPA  150 (296)
T ss_dssp             H-HTTC--CTTCEEEEECCCSSSCSSHHHHHHHHHHT----------TCCCEEEETTHHHHHHHTTCCCBCS-CCCCCCC
T ss_pred             H-HcCC--CCCCeEEEEcCCCCCcchHHHHHHHHHHc----------CCCcEEEcCCCHHHHHHcCCccccC-CCCCCCC
Confidence            0 1112  3445689999941 554 88999999999          9999999999999998864333321 2222223


Q ss_pred             CCccccccccccccc-CCCCCCCCceeeechhhHH
Q psy1013         171 GYKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQ  204 (258)
Q Consensus       171 ~~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~  204 (258)
                      .|..+.......... ....+..+++.+||.--..
T Consensus       151 ~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~  185 (296)
T 1rhs_A          151 IFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQG  185 (296)
T ss_dssp             CCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHH
T ss_pred             CcccCCCcceEEcHHHHHHHhcCCCceEEeCCchh
Confidence            455444333222221 1222223456777776543

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.71  E-value=2.5e-17  Score=144.70  Aligned_cols=103  Identities=22%  Similarity=0.363  Sum_probs=81.0

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc--------cCCcCCceeCCCchhhhHHH--------HhhHHHhh
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK--------GGHIQGALNIYTREHLVKEF--------IESKVHAQ   95 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~--------~gHIpGAvnip~~~~l~~~~--------~~~~~~~~   95 (258)
                      -..|+++++.+++++      ++++|||||++.||.        .||||||+|+|+ ..+...-        +...+. .
T Consensus       146 ~~~i~~~~l~~~l~~------~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~l~~~~~-~  217 (271)
T 1e0c_A          146 EPTASRDYLLGRLGA------ADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW-TAAMDPSRALRIRTDIAGRLE-E  217 (271)
T ss_dssp             TTBCCHHHHHHHTTC------TTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCG-GGGEEGGGTTEECTTHHHHHH-H
T ss_pred             cccccHHHHHHHhcC------CCcEEEEcCChhhcCCccCCCCcCCcCCCceeccH-HHhCCCCCCCCCHHHHHHHHH-H
Confidence            356899999999876      679999999999999        899999999999 5553210        000000 1


Q ss_pred             ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        96 ~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ..+  ++...||+||. +|.||..+++.|+..          ||++|++|+||+.+|...
T Consensus       218 ~~~--~~~~~ivvyC~-~G~rs~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~  264 (271)
T 1e0c_A          218 LGI--TPDKEIVTHCQ-THHRSGLTYLIAKAL----------GYPRVKGYAGSWGEWGNH  264 (271)
T ss_dssp             TTC--CTTSEEEEECS-SSSHHHHHHHHHHHT----------TCSCEEECSSHHHHHTTC
T ss_pred             cCC--CCCCCEEEECC-chHHHHHHHHHHHHc----------CCCCceeeCCcHHHHhcC
Confidence            112  34456899999 889999999999998          999999999999999763

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.70  E-value=1.4e-17  Score=147.36  Aligned_cols=108  Identities=15%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEec-CchhhccCCcCCceeCCCchhhhH----------HHHhhHHHhhccccCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCR-YPYEYKGGHIQGALNIYTREHLVK----------EFIESKVHAQSNATCD  101 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR-~~~Ey~~gHIpGAvnip~~~~l~~----------~~~~~~~~~~~~~~~~  101 (258)
                      ..||+++|.+++++      ++++||||| ++.||..||||||+|+|. .....          ..+...+. .+.+  +
T Consensus         8 ~~is~~~l~~~l~~------~~~~liDvR~~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~~~~~~~~~-~~gi--~   77 (285)
T 1uar_A            8 VLVSTDWVQEHLED------PKVRVLEVDEDILLYDTGHIPGAQKIDW-QRDFWDPVVRDFISEEEFAKLME-RLGI--S   77 (285)
T ss_dssp             GEECHHHHHTTTTC------TTEEEEEECSSTTHHHHCBCTTCEEECH-HHHHBCSSSSSBCCHHHHHHHHH-HTTC--C
T ss_pred             ceEcHHHHHHhcCC------CCEEEEEcCCCcchhhcCcCCCCEECCc-hhhccCCcccCCCCHHHHHHHHH-HcCC--C
Confidence            46999999999875      579999999 789999999999999999 43110          01111111 1112  3


Q ss_pred             CceEEEEecCCCCC-cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013         102 KRRVLIFHCEYSAE-RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       102 ~~~~vV~yc~~s~~-rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      +...||+||. ++. ++.++++.|+.+          ||++|++|+||+.+|......++.
T Consensus        78 ~~~~ivvyc~-~g~~~s~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~g~p~~~  127 (285)
T 1uar_A           78 NDTTVVLYGD-KNNWWAAYAFWFFKYN----------GHKDVRLMNGGRQKWVEEGRPLTT  127 (285)
T ss_dssp             TTCEEEEECH-HHHHHHHHHHHHHHHT----------TCSCEEEETTHHHHHHHHTCCCBC
T ss_pred             CCCeEEEECC-CCCccHHHHHHHHHHc----------CCCCeEEecCCHHHHHHCCCcccC
Confidence            4456899999 555 799999999999          999999999999999886544443

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.69  E-value=3.2e-17  Score=144.43  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecC-chhhccCCcCCceeCCCchhhhH----------HHHhhHHHhhccccCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRY-PYEYKGGHIQGALNIYTREHLVK----------EFIESKVHAQSNATCD  101 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~-~~Ey~~gHIpGAvnip~~~~l~~----------~~~~~~~~~~~~~~~~  101 (258)
                      ..||+++|.+++++      ++++|||||+ +.||..||||||+|+|+ ..+..          ..+...+. .+.+  +
T Consensus         6 ~~is~~~l~~~l~~------~~~~liDvR~~~~ey~~ghIpgA~~ip~-~~~~~~~~~~~~~~~~~~~~~~~-~~gi--~   75 (277)
T 3aay_A            6 VLVSADWAESNLHA------PKVVFVEVDEDTSAYDRDHIAGAIKLDW-RTDLQDPVKRDFVDAQQFSKLLS-ERGI--A   75 (277)
T ss_dssp             HEECHHHHHTTTTC------TTEEEEEEESSSHHHHHCBSTTCEEEET-TTTTBCSSSSSBCCHHHHHHHHH-HHTC--C
T ss_pred             ceEcHHHHHHHhCC------CCEEEEEcCCChhhHhhCCCCCcEEecc-cccccCCCCCCCCCHHHHHHHHH-HcCC--C
Confidence            36899999998876      5799999998 89999999999999998 43210          11111111 1112  3


Q ss_pred             CceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         102 KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       102 ~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      +...||+||..++.++.++++.|+.+          ||++|++|+||+.+|....
T Consensus        76 ~~~~vvvyc~~g~~~s~~a~~~L~~~----------G~~~v~~l~GG~~~W~~~g  120 (277)
T 3aay_A           76 NEDTVILYGGNNNWFAAYAYWYFKLY----------GHEKVKLLDGGRKKWELDG  120 (277)
T ss_dssp             TTSEEEEECSGGGHHHHHHHHHHHHT----------TCCSEEEETTHHHHHHHTT
T ss_pred             CCCeEEEECCCCCchHHHHHHHHHHc----------CCCcEEEecCCHHHHHHcC
Confidence            44558899994344789999999999          9999999999999998864

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.68  E-value=5.4e-17  Score=149.67  Aligned_cols=109  Identities=22%  Similarity=0.337  Sum_probs=80.6

Q ss_pred             CCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecC--------chhhccCCcCCceeCCCchh-hhHH-----------
Q psy1013          27 GKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRY--------PYEYKGGHIQGALNIYTREH-LVKE-----------   86 (258)
Q Consensus        27 ~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~--------~~Ey~~gHIpGAvnip~~~~-l~~~-----------   86 (258)
                      ..++....||++||.++++       + ++|||||+        +.||..||||||+|+|+ .. +...           
T Consensus         8 ~~~p~~~~Is~~el~~~l~-------~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~-~~~l~~~~~~~~~~~~lp   78 (373)
T 1okg_A            8 PKHPGKVFLDPSEVADHLA-------E-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADV-DTNLSKLVPTSTARHPLP   78 (373)
T ss_dssp             CSSTTCCEECHHHHTTCGG-------G-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCT-TTTSCCCCTTCCCSSCCC
T ss_pred             cCCCCCcEEcHHHHHHHcC-------C-cEEEEecCCccccccchhHHhhCcCCCCEEeCc-hhhhhcccccCCccccCC
Confidence            3445567899999998875       3 89999998        68999999999999999 54 3211           


Q ss_pred             ---HHhhHHHhhccccCCCceEEEEecCCCCCcHH-HHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccc
Q psy1013          87 ---FIESKVHAQSNATCDKRRVLIFHCEYSAERGP-TLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQD  158 (258)
Q Consensus        87 ---~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~-~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~  158 (258)
                         .+...+. .+.+  ++...||+||+.++.++. +++|.|+.+          || +|++|+||+.+|.+....
T Consensus        79 ~~~~f~~~l~-~~gi--~~d~~VVvYc~~~G~rsa~ra~~~L~~~----------G~-~V~~L~GG~~aW~~~g~p  140 (373)
T 1okg_A           79 PXAEFIDWCM-ANGM--AGELPVLCYDDECGAMGGCRLWWMLNSL----------GA-DAYVINGGFQACKAAGLE  140 (373)
T ss_dssp             CHHHHHHHHH-HTTC--SSSSCEEEECSSTTTTTHHHHHHHHHHH----------TC-CEEEETTTTHHHHTTTCC
T ss_pred             CHHHHHHHHH-HcCC--CCCCeEEEEeCCCCchHHHHHHHHHHHc----------CC-eEEEeCCCHHHHHhhcCC
Confidence               0111110 1122  344458899954777776 999999999          99 999999999999986433

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.67  E-value=8.6e-17  Score=141.98  Aligned_cols=102  Identities=23%  Similarity=0.333  Sum_probs=78.0

Q ss_pred             CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhh-----------ccCCcCCceeCCCchhhhHH-------HHhhHHH
Q psy1013          32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-----------KGGHIQGALNIYTREHLVKE-------FIESKVH   93 (258)
Q Consensus        32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-----------~~gHIpGAvnip~~~~l~~~-------~~~~~~~   93 (258)
                      ...|+++++.+++.+      ++++|||||++.||           ..||||||+|||+ .++...       .+.....
T Consensus       151 ~~~i~~~e~~~~~~~------~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~-~~~~~~~~~~~~~~l~~~~~  223 (280)
T 1urh_A          151 EAVVKVTDVLLASHE------NTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPW-TELVREGELKTTDELDAIFF  223 (280)
T ss_dssp             GGBCCHHHHHHHHHH------TCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCG-GGGBSSSSBCCHHHHHHHHH
T ss_pred             ccEEcHHHHHHHhcC------CCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeH-HHhhcCCccCCHHHHHHHHH
Confidence            346999999999986      57899999999999           6899999999999 555430       1111110


Q ss_pred             hhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          94 AQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        94 ~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                       ....  ++...||+||. +|.||..++..|+.+          ||++|++|+||+.+|..
T Consensus       224 -~~~~--~~~~~ivv~C~-~G~rs~~a~~~L~~~----------G~~~v~~~~GG~~~W~~  270 (280)
T 1urh_A          224 -GRGV--SYDKPIIVSCG-SGVTAAVVLLALATL----------DVPNVKLYDGAWSEWGA  270 (280)
T ss_dssp             -TTTC--CSSSCEEEECC-SSSTHHHHHHHHHHT----------TCSSCEEECCSCCC---
T ss_pred             -HcCC--CCCCCEEEECC-hHHHHHHHHHHHHHc----------CCCCceeeCChHHHHhc
Confidence             1112  33344899999 899999999999999          99999999999999976

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.66  E-value=1.5e-16  Score=141.73  Aligned_cols=102  Identities=14%  Similarity=0.297  Sum_probs=80.5

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhh------------ccCCcCCceeCCCchhhhH--------HHHhhHH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY------------KGGHIQGALNIYTREHLVK--------EFIESKV   92 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey------------~~gHIpGAvnip~~~~l~~--------~~~~~~~   92 (258)
                      ..|+++++.+++++      ++++|||||++.||            ..||||||+|||+ .++..        ..+...+
T Consensus       160 ~~i~~~e~~~~~~~------~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~-~~l~~~~~~~~~~~~l~~~~  232 (296)
T 1rhs_A          160 LLKTYEQVLENLES------KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPF-MNFLTEDGFEKSPEELRAMF  232 (296)
T ss_dssp             GEECHHHHHHHHHH------CCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCG-GGGBCTTSCBCCHHHHHHHH
T ss_pred             eEEcHHHHHHHhcC------CCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecH-HHhcCCCCcCCCHHHHHHHH
Confidence            57999999999986      57899999999999            8899999999999 55532        1111111


Q ss_pred             HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          93 HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        93 ~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      . .....  +...||+||. +|.||..++..|+.+          ||++|++|+||+.+|...
T Consensus       233 ~-~~~~~--~~~~ivv~C~-sG~rs~~a~~~L~~~----------G~~~v~~~~GG~~~W~~~  281 (296)
T 1rhs_A          233 E-AKKVD--LTKPLIATCR-KGVTACHIALAAYLC----------GKPDVAIYDGSWFEWFHR  281 (296)
T ss_dssp             H-HTTCC--TTSCEEEECS-SSSTHHHHHHHHHHT----------TCCCCEEESSHHHHHHHH
T ss_pred             H-HcCCC--CCCCEEEECC-cHHHHHHHHHHHHHc----------CCCCceeeCCcHHHHhcC
Confidence            1 11123  3345889999 899999999999988          999999999999999873

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.66  E-value=2.3e-16  Score=141.38  Aligned_cols=102  Identities=15%  Similarity=0.289  Sum_probs=80.0

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhh-----------ccCCcCCceeCCCchhhhHH--------HHhhHHH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-----------KGGHIQGALNIYTREHLVKE--------FIESKVH   93 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-----------~~gHIpGAvnip~~~~l~~~--------~~~~~~~   93 (258)
                      ..|+.+++.+++++      ++++|||||++.||           ..||||||+|+|+ .++...        .+...+.
T Consensus       175 ~~i~~~e~~~~~~~------~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~-~~l~~~~~~~~~~~~l~~~~~  247 (302)
T 3olh_A          175 FIKTYEDIKENLES------RRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPF-TDFLSQEGLEKSPEEIRHLFQ  247 (302)
T ss_dssp             GEECHHHHHHHHHH------CCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCG-GGGBCSSSCBCCHHHHHHHHH
T ss_pred             ceecHHHHHHhhcC------CCcEEEecCCHHHccccccCCCcCCcCccCCCceecCH-HHhcCCCCccCCHHHHHHHHH
Confidence            46899999999986      67899999999999           7899999999999 555321        1111111


Q ss_pred             hhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          94 AQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        94 ~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       .....  +...||+||. +|.||..++..|+.+          ||++|++|+||+.+|...
T Consensus       248 -~~~~~--~~~~iv~yC~-sG~rs~~a~~~L~~~----------G~~~v~~~~Gg~~~W~~~  295 (302)
T 3olh_A          248 -EKKVD--LSKPLVATCG-SGVTACHVALGAYLC----------GKPDVPIYDGSWVEWYMR  295 (302)
T ss_dssp             -HTTCC--TTSCEEEECS-SSSTTHHHHHHHHTT----------TCCCCCEESSHHHHHHHH
T ss_pred             -hcCCC--CCCCEEEECC-ChHHHHHHHHHHHHc----------CCCCeeEeCCcHHHHhhc
Confidence             11223  3344889999 999999999999888          999999999999999874

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.65  E-value=7.8e-16  Score=148.07  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=88.4

Q ss_pred             ccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhcccc
Q psy1013          20 ILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNAT   99 (258)
Q Consensus        20 ~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~   99 (258)
                      .+|+.+.........|+++++.+++.+      ++++|||||++.||..||||||+|+|. +++...+..        ++
T Consensus       364 g~p~~~~~~~~~~~~i~~~~l~~~l~~------~~~~liDvR~~~e~~~ghIpgA~~ip~-~~l~~~l~~--------l~  428 (539)
T 1yt8_A          364 GAWSAPLPRQPRADTIDPTTLADWLGE------PGTRVLDFTASANYAKRHIPGAAWVLR-SQLKQALER--------LG  428 (539)
T ss_dssp             SSCCCCCCCCCCCCEECHHHHHHHTTS------TTEEEEECSCHHHHHHCBCTTCEECCG-GGHHHHHHH--------HC
T ss_pred             hccccCCCCCCcCCccCHHHHHHHhcC------CCeEEEEeCCHHHhhcCcCCCchhCCH-HHHHHHHHh--------CC
Confidence            344443233456788999999999986      679999999999999999999999999 666544321        23


Q ss_pred             CCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         100 CDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       100 ~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                        +...||+||+ ++.||..+++.|+..          ||++|++|+||+.+|.+.
T Consensus       429 --~~~~ivv~C~-sG~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  471 (539)
T 1yt8_A          429 --TAERYVLTCG-SSLLARFAVAEVQAL----------SGKPVFLLDGGTSAWVAA  471 (539)
T ss_dssp             --CCSEEEEECS-SSHHHHHHHHHHHHH----------HCSCEEEETTHHHHHHHT
T ss_pred             --CCCeEEEEeC-CChHHHHHHHHHHHc----------CCCCEEEeCCcHHHHHhC
Confidence              3345899999 899999999999999          999999999999999885

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.64  E-value=2.2e-16  Score=152.69  Aligned_cols=99  Identities=24%  Similarity=0.441  Sum_probs=82.1

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.|++++|.++++       ++++|||||++.||..||||||+|+|. +++...+ .       .++++  ..||+|
T Consensus       486 ~~~~~i~~~~~~~~~~-------~~~~~iDvR~~~e~~~ghi~ga~~ip~-~~l~~~~-~-------~l~~~--~~iv~~  547 (588)
T 3ics_A          486 GFVDTVQWHEIDRIVE-------NGGYLIDVREPNELKQGMIKGSINIPL-DELRDRL-E-------EVPVD--KDIYIT  547 (588)
T ss_dssp             TSCCEECTTTHHHHHH-------TTCEEEECSCGGGGGGCBCTTEEECCH-HHHTTCG-G-------GSCSS--SCEEEE
T ss_pred             cccceecHHHHHHHhc-------CCCEEEEcCCHHHHhcCCCCCCEECCH-HHHHHHH-h-------hCCCC--CeEEEE
Confidence            4568899999999996       458999999999999999999999999 6554322 1       12333  348899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccc
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQD  158 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~  158 (258)
                      |. ++.||..+++.|+..          ||+ |++|+||+.+|.+..+.
T Consensus       548 C~-~g~rs~~a~~~l~~~----------G~~-v~~l~GG~~~w~~~~~~  584 (588)
T 3ics_A          548 CQ-LGMRGYVAARMLMEK----------GYK-VKNVDGGFKLYGTVLPE  584 (588)
T ss_dssp             CS-SSHHHHHHHHHHHHT----------TCC-EEEETTHHHHHHHHCGG
T ss_pred             CC-CCcHHHHHHHHHHHc----------CCc-EEEEcchHHHHHhhhhh
Confidence            98 899999999999999          998 99999999999986544

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=2.3e-16  Score=149.12  Aligned_cols=97  Identities=22%  Similarity=0.398  Sum_probs=81.8

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      ....|+++++.+++.+      ++++|||+|++.||..||||||+|+|+ .++...+.        .++++  ..||+||
T Consensus       372 ~~~~i~~~~l~~~~~~------~~~~lvDvR~~~e~~~ghIpgA~~ip~-~~l~~~~~--------~l~~~--~~vvv~C  434 (474)
T 3tp9_A          372 SYANVSPDEVRGALAQ------QGLWLLDVRNVDEWAGGHLPQAHHIPL-SKLAAHIH--------DVPRD--GSVCVYC  434 (474)
T ss_dssp             CCEEECHHHHHHTTTT------TCCEEEECSCHHHHHHCBCTTCEECCH-HHHTTTGG--------GSCSS--SCEEEEC
T ss_pred             cccccCHHHHHHHhcC------CCcEEEECCCHHHHhcCcCCCCEECCH-HHHHHHHh--------cCCCC--CEEEEEC
Confidence            4567999999998876      679999999999999999999999999 66543321        12333  3488999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      + ++.||..++..|+..          ||++|++|+||+.+|.+.
T Consensus       435 ~-~G~ra~~a~~~L~~~----------G~~~v~~~~Gg~~~W~~~  468 (474)
T 3tp9_A          435 R-TGGRSAIAASLLRAH----------GVGDVRNMVGGYEAWRGK  468 (474)
T ss_dssp             S-SSHHHHHHHHHHHHH----------TCSSEEEETTHHHHHHHT
T ss_pred             C-CCHHHHHHHHHHHHc----------CCCCEEEecChHHHHHhC
Confidence            9 889999999999999          999999999999999884

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.63  E-value=7.7e-16  Score=143.86  Aligned_cols=156  Identities=17%  Similarity=0.204  Sum_probs=99.9

Q ss_pred             CccCHHHHHHHHhcccCCC--CCCeEEEEec--CchhhccCCcCCceeCCCchhhhHH---------HHhhHHHhhcccc
Q psy1013          33 KNISPDTLARLIRGEFNDV--VDKYLIIDCR--YPYEYKGGHIQGALNIYTREHLVKE---------FIESKVHAQSNAT   99 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~--~~~~~IIDvR--~~~Ey~~gHIpGAvnip~~~~l~~~---------~~~~~~~~~~~~~   99 (258)
                      ..|+++++.++++......  .++++|||+|  ++.||..||||||+|+|+ ..+...         .+...+. ...+ 
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~-~~~~~~~~~~~~~~~~l~~~~~-~~gi-  200 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDT-NEVESEPLWNKVSDEQLKAMLA-KHGI-  200 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEG-GGTEETTTTEECCHHHHHHHHH-HTTC-
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCH-HHhccCCCCCCCCHHHHHHHHH-HcCC-
Confidence            5689999999987421111  1579999999  999999999999999999 655320         0111110 1112 


Q ss_pred             CCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCccc--CCCCCCcccc-
Q psy1013         100 CDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLP--MADPGYKSRY-  176 (258)
Q Consensus       100 ~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~--~~~~~~~ak~-  176 (258)
                       ++...||+||+ ++.+|..+++.|+.+          ||++|++|+||+.+|......... |...  .....|.+.. 
T Consensus       201 -~~~~~ivvyC~-~G~~a~~~~~~L~~~----------G~~~v~~l~Gg~~~W~~~g~pv~~-g~~~~~~~~~~~~~~~~  267 (423)
T 2wlr_A          201 -RHDTTVILYGR-DVYAAARVAQIMLYA----------GVKDVRLLDGGWQTWSDAGLPVER-GTPPKVKAEPDFGVKIP  267 (423)
T ss_dssp             -CTTSEEEEECS-SHHHHHHHHHHHHHH----------TCSCEEEETTTHHHHHHTTCCCBC-SSCCCCCCCCCCSSCSC
T ss_pred             -CCCCeEEEECC-CchHHHHHHHHHHHc----------CCCCeEEECCCHHHHhhCCCCccc-CCCCCCCCCcCcccccC
Confidence             34456899999 899999999999999          999999999999999874322221 1111  1222344321 


Q ss_pred             -ccccccccc-CCCCCCCCceeeechhhHH
Q psy1013         177 -LRSEDRAHN-AYPTLDYPEMYLLNGGYKQ  204 (258)
Q Consensus       177 -~re~dr~~n-~~p~l~ype~~~ld~g~~~  204 (258)
                       ..+...... ....+..+++.+||.--..
T Consensus       268 ~~~~~~i~~~e~~~~l~~~~~~liDvR~~~  297 (423)
T 2wlr_A          268 AQPQLMLDMEQARGLLHRQDASLVSIRSWP  297 (423)
T ss_dssp             SCGGGEECHHHHHTTTTCSSEEEEECSCHH
T ss_pred             CChhheecHHHHHHHhcCCCceEEecCchh
Confidence             122222222 2334455678888887553

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.63  E-value=5.8e-16  Score=136.88  Aligned_cols=101  Identities=27%  Similarity=0.358  Sum_probs=76.3

Q ss_pred             CccCHHHHHHHHhc--ccCCCCCCeEEEEecCchhhc----------------cCCcCCceeCCCchhhhH--------H
Q psy1013          33 KNISPDTLARLIRG--EFNDVVDKYLIIDCRYPYEYK----------------GGHIQGALNIYTREHLVK--------E   86 (258)
Q Consensus        33 ~~Is~~~L~~~l~~--~~~~~~~~~~IIDvR~~~Ey~----------------~gHIpGAvnip~~~~l~~--------~   86 (258)
                      ..|+++++.++++.  .     ++..|||||++.||.                .||||||+|+|+ ..+..        .
T Consensus       146 ~~i~~~el~~~l~~~~~-----~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~-~~~~~~~~~~~~~~  219 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKE-----GKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPW-AKAVNPDGTFKSAE  219 (285)
T ss_dssp             GEECHHHHHHHHHHHHT-----TSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCG-GGGBCTTSCBCCHH
T ss_pred             eEEcHHHHHHHHhhccc-----CCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCH-HHhcCCCCcCCCHH
Confidence            35999999999851  0     234799999999997                799999999998 55431        1


Q ss_pred             HHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHH-HhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013          87 FIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLR-SEDRAHNAYPTLDYPEMYLLNGGYKQFY  153 (258)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~-~~~r~~n~yp~lGy~~V~iL~GG~~~w~  153 (258)
                      .+...+. ...+  ++...||+||. +|.||..+++.|+ .+          ||++|++|+||+.+|.
T Consensus       220 ~l~~~~~-~~g~--~~~~~ivvyC~-~G~rs~~a~~~L~~~~----------G~~~v~~l~GG~~~W~  273 (285)
T 1uar_A          220 ELRALYE-PLGI--TKDKDIVVYCR-IAERSSHSWFVLKYLL----------GYPHVKNYDGSWTEWG  273 (285)
T ss_dssp             HHHHHHG-GGTC--CTTSEEEEECS-SHHHHHHHHHHHHTTS----------CCSCEEEESSHHHHHT
T ss_pred             HHHHHHH-HcCC--CCCCCEEEECC-chHHHHHHHHHHHHHc----------CCCCcceeCchHHHHh
Confidence            1111111 1112  34455899998 8889999999999 88          9999999999999997

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.62  E-value=4.4e-16  Score=137.10  Aligned_cols=98  Identities=22%  Similarity=0.319  Sum_probs=74.0

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc----------------CCcCCceeCCCchhhhH--------HHHh
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------------GHIQGALNIYTREHLVK--------EFIE   89 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~----------------gHIpGAvnip~~~~l~~--------~~~~   89 (258)
                      .++++++.+++.+      ++  |||||++.||.+                ||||||+|+|+ ..+..        ..+.
T Consensus       145 ~~~~~el~~~~~~------~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~l~  215 (277)
T 3aay_A          145 RAFRDEVLAAINV------KN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW-SRAANEDGTFKSDEELA  215 (277)
T ss_dssp             EECHHHHHHTTTT------SE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCG-GGGBCTTSCBCCHHHHH
T ss_pred             hcCHHHHHHhcCC------CC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCH-HHhcCCCCcCCCHHHHH
Confidence            3789999998875      33  999999999986                99999999999 54311        0111


Q ss_pred             hHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHH-hHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          90 SKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRS-EDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        90 ~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~-~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      ..+. ...+.  +...||+||. +|.||..+++.|++ +          ||++|++|+||+.+|..
T Consensus       216 ~~~~-~~~~~--~~~~iv~yC~-~G~rs~~a~~~L~~~~----------G~~~v~~l~GG~~~W~~  267 (277)
T 3aay_A          216 KLYA-DAGLD--NSKETIAYCR-IGERSSHTWFVLRELL----------GHQNVKNYDGSWTEYGS  267 (277)
T ss_dssp             HHHH-HHTCC--TTSCEEEECS-SHHHHHHHHHHHHTTS----------CCSCEEEESSHHHHHTT
T ss_pred             HHHH-HcCCC--CCCCEEEEcC-cHHHHHHHHHHHHHHc----------CCCcceeeCchHHHHhc
Confidence            1111 11123  3344899999 88899999999986 7          99999999999999976

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.61  E-value=7.6e-16  Score=132.36  Aligned_cols=126  Identities=15%  Similarity=0.092  Sum_probs=79.6

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCch--hhh----H------HHHhhHHHhhccccCCCceEEEEecCCCCC-cHHH
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTRE--HLV----K------EFIESKVHAQSNATCDKRRVLIFHCEYSAE-RGPT  119 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~--~l~----~------~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~-rs~~  119 (258)
                      ++++|||||++.||..||||||+|+|. .  ++.    .      ..+...+. .+  ..  ...||+||. ++. ++.+
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l--~~--~~~ivvyc~-~g~~~s~~   77 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDL-SAPKLRLREEAELKALEGGLTELFQ-TL--GL--RSPVVLYDE-GLTSRLCR   77 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCC-CSCCCCCCSHHHHHHHHHHHHHHHH-HT--TC--CSSEEEECS-SSCHHHHH
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCc-cchhcccCCCCCcCCCHHHHHHHHH-hc--CC--CCEEEEEcC-CCCccHHH
Confidence            679999999999999999999999999 5  221    0      01111111 11  11  344889999 666 9999


Q ss_pred             HHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCcccccccccccccCCCCCCCCceeeec
Q psy1013         120 LSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPEMYLLN  199 (258)
Q Consensus       120 ~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~~re~dr~~n~~p~l~ype~~~ld  199 (258)
                      +++.|+ +          ||++|++|+||   |.+ +|....  ........|..+...+...+......    ++.+||
T Consensus        78 a~~~L~-~----------G~~~v~~l~GG---W~~-~p~~~~--~~~~~~~~~~~~~~~~~~i~~~e~~~----~~~liD  136 (230)
T 2eg4_A           78 TAFFLG-L----------GGLEVQLWTEG---WEP-YATEKE--EPKPERTEVVAKLRRDWLLTADEAAR----HPLLLD  136 (230)
T ss_dssp             HHHHHH-H----------TTCCEEEECSS---CGG-GCCBCS--CCCCCCCCCCCCCCGGGBCCHHHHHT----CSCEEE
T ss_pred             HHHHHH-c----------CCceEEEeCCC---Ccc-CcccCC--CCCcccccceecCCccceeCHHHHhh----CCeEEe
Confidence            999999 9          99999999999   877 544332  22233334544433332222221111    456787


Q ss_pred             hhhHHHH
Q psy1013         200 GGYKQFY  206 (258)
Q Consensus       200 ~g~~~~~  206 (258)
                      .--..-|
T Consensus       137 vR~~~e~  143 (230)
T 2eg4_A          137 VRSPEEF  143 (230)
T ss_dssp             CSCHHHH
T ss_pred             CCCHHHc
Confidence            7654333

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.59  E-value=1.4e-15  Score=130.71  Aligned_cols=92  Identities=24%  Similarity=0.329  Sum_probs=73.6

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc----------CCcCCceeCCCchhhhHH--HHhhHHHhhccccC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------GHIQGALNIYTREHLVKE--FIESKVHAQSNATC  100 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~----------gHIpGAvnip~~~~l~~~--~~~~~~~~~~~~~~  100 (258)
                      ..|+++++.+           +++|||+|++.||.+          ||||||+|+|+ .++...  .+.     ....  
T Consensus       121 ~~i~~~e~~~-----------~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~-~~~~~~~e~~~-----~~~~--  181 (230)
T 2eg4_A          121 WLLTADEAAR-----------HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPL-ELFLSPEGLLE-----RLGL--  181 (230)
T ss_dssp             GBCCHHHHHT-----------CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCG-GGGGCCTTHHH-----HHTC--
T ss_pred             ceeCHHHHhh-----------CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCH-HHhCChHHHHH-----hcCC--
Confidence            3588888765           368999999999999          99999999999 665432  111     1112  


Q ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         101 DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       101 ~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ++...||+||. +|.||..++..|+.+          | .+|++|+||+.+|...
T Consensus       182 ~~~~~iv~~C~-~G~rs~~a~~~L~~~----------G-~~v~~~~Gg~~~W~~~  224 (230)
T 2eg4_A          182 QPGQEVGVYCH-SGARSAVAFFVLRSL----------G-VRARNYLGSMHEWLQE  224 (230)
T ss_dssp             CTTCEEEEECS-SSHHHHHHHHHHHHT----------T-CEEEECSSHHHHHHHT
T ss_pred             CCCCCEEEEcC-ChHHHHHHHHHHHHc----------C-CCcEEecCcHHHHhhc
Confidence            34455899999 899999999999999          9 8999999999999874

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.59  E-value=9.4e-16  Score=138.33  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=76.3

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc----------------CCcCCceeCCCchhhhH--------HHH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------------GHIQGALNIYTREHLVK--------EFI   88 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~----------------gHIpGAvnip~~~~l~~--------~~~   88 (258)
                      ..|+++++.+++++      .  +|||+|++.||.+                ||||||+|+|+ .++..        ..+
T Consensus       179 ~~i~~~el~~~l~~------~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~-~~~~~~~g~~~~~~~l  249 (318)
T 3hzu_A          179 IRAFRDDVLAILGA------Q--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPW-GKAADESGRFRSREEL  249 (318)
T ss_dssp             TBCCHHHHHHHTTT------S--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCG-GGGBCTTSCBCCHHHH
T ss_pred             ccccHHHHHHhhcC------C--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCH-HHhcCCCCcCCCHHHH
Confidence            46899999998875      3  8999999999998                99999999999 54421        111


Q ss_pred             hhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHH-hHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          89 ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRS-EDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        89 ~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~-~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      ...    + ...++...||+||. +|.||..++..|++ +          ||++|++|+||+.+|..
T Consensus       250 ~~~----~-~~l~~~~~ivvyC~-sG~rs~~a~~~L~~~~----------G~~~v~~~~GG~~~W~~  300 (318)
T 3hzu_A          250 ERL----Y-DFINPDDQTVVYCR-IGERSSHTWFVLTHLL----------GKADVRNYDGSWTEWGN  300 (318)
T ss_dssp             HHH----T-TTCCTTCCCEEECS-SSHHHHHHHHHHHHTS----------CCSSCEECTTHHHHHTT
T ss_pred             HHH----h-cCCCCCCcEEEEcC-ChHHHHHHHHHHHHHc----------CCCCeeEeCCcHHHHhc
Confidence            111    1 11233445889999 99999999999987 7          99999999999999985

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.59  E-value=6.9e-16  Score=148.05  Aligned_cols=94  Identities=29%  Similarity=0.455  Sum_probs=75.8

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      .++.|++++|.++  +      ++++|||||++.||+.||||||+|+|. +++...+..        ++  +...||+||
T Consensus       471 ~~~~i~~~~~~~~--~------~~~~~iDvR~~~e~~~~~i~ga~~ip~-~~l~~~~~~--------~~--~~~~iv~~c  531 (565)
T 3ntd_A          471 DATPIHFDQIDNL--S------EDQLLLDVRNPGELQNGGLEGAVNIPV-DELRDRMHE--------LP--KDKEIIIFS  531 (565)
T ss_dssp             SCCEECTTTTTSC--C------TTEEEEECSCGGGGGGCCCTTCEECCG-GGTTTSGGG--------SC--TTSEEEEEC
T ss_pred             ccceeeHHHHHhC--C------CCcEEEEeCCHHHHhcCCCCCcEECCH-HHHHHHHhh--------cC--CcCeEEEEe
Confidence            3456677766655  2      679999999999999999999999999 665432211        22  344588999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      . ++.||..+++.|+..          || +|++|+||+.+|...
T Consensus       532 ~-~g~rs~~a~~~l~~~----------G~-~v~~l~gG~~~w~~~  564 (565)
T 3ntd_A          532 Q-VGLRGNVAYRQLVNN----------GY-RARNLIGGYRTYKFA  564 (565)
T ss_dssp             S-SSHHHHHHHHHHHHT----------TC-CEEEETTHHHHHHHT
T ss_pred             C-CchHHHHHHHHHHHc----------CC-CEEEEcChHHHHHhC
Confidence            8 899999999999999          99 999999999999863

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.57  E-value=3.2e-15  Score=139.69  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=77.6

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhh-----------ccCCcCCceeCCCch-------hhhH--------H
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-----------KGGHIQGALNIYTRE-------HLVK--------E   86 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-----------~~gHIpGAvnip~~~-------~l~~--------~   86 (258)
                      ..|+++++.+++..      ++.+|||||++.||           ..||||||+|+|. .       ++..        .
T Consensus       272 ~~i~~~e~~~~l~~------~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~-~~~~~~~~~~~~~~~~~~~~~  344 (423)
T 2wlr_A          272 LMLDMEQARGLLHR------QDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHMEDFHNPDGTMRSAD  344 (423)
T ss_dssp             GEECHHHHHTTTTC------SSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCC-CSSTTCCGGGBCTTSSBCCHH
T ss_pred             heecHHHHHHHhcC------CCceEEecCchhheeeeccCCCCCCcCCCCCCcccccc-ccccccHHHHcCCCCcCCCHH
Confidence            35899999998875      67899999999999           8999999999987 3       1110        0


Q ss_pred             HHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          87 FIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      .+...+. ....  ++...||+||. +|.||..++..|+.+          ||++|++|+||+.+|..
T Consensus       345 ~l~~~~~-~~~~--~~~~~ivvyC~-sG~rs~~aa~~L~~~----------G~~~v~~~~GG~~~W~~  398 (423)
T 2wlr_A          345 DITAMWK-AWNI--KPEQQVSFYCG-TGWRASETFMYARAM----------GWKNVSVYDGGWYEWSS  398 (423)
T ss_dssp             HHHHHHH-TTTC--CTTSEEEEECS-SSHHHHHHHHHHHHT----------TCSSEEEESSHHHHHTT
T ss_pred             HHHHHHH-HcCC--CCCCcEEEECC-cHHHHHHHHHHHHHc----------CCCCcceeCccHHHHhc
Confidence            1111110 0112  34455899999 999999999999999          99999999999999976

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.53  E-value=3.7e-15  Score=135.11  Aligned_cols=111  Identities=16%  Similarity=0.275  Sum_probs=80.8

Q ss_pred             CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecC---------chhh-ccCCcCCceeCCCchhhhH------------
Q psy1013          28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRY---------PYEY-KGGHIQGALNIYTREHLVK------------   85 (258)
Q Consensus        28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~---------~~Ey-~~gHIpGAvnip~~~~l~~------------   85 (258)
                      .++-++.||+++|.++|..+   ...+++||||+-         ..|| +.||||||+++++ +.+..            
T Consensus        23 sm~~~~LIsp~~l~~ll~~~---~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dl-d~~~d~~~~~ph~LP~~   98 (327)
T 3utn_X           23 SMPLFDLISPKAFVKLVASE---KVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDI-DAISDKKSPYPHMFPTK   98 (327)
T ss_dssp             -CCSCEEECHHHHHHHHHHC---SSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCT-TTSSCTTSSSTTCCCCH
T ss_pred             cCccccccCHHHHHHHHhCC---CCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeCh-HHhcCCCCCCCCCCcCH
Confidence            34555689999999999863   124699999972         3366 7899999999988 54311            


Q ss_pred             HHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013          86 EFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      +.+...+. .+.+  ++...||+|++.++..+++++|+|+.+          ||++|+||+|| .+|.++.
T Consensus        99 ~~f~~~l~-~lGI--~~d~~VVvYD~~~~~~AaR~wW~Lr~~----------Gh~~V~vLdGg-~aW~~~g  155 (327)
T 3utn_X           99 KVFDDAMS-NLGV--QKDDILVVYDRVGNFSSPRCAWTLGVM----------GHPKVYLLNNF-NQYREFK  155 (327)
T ss_dssp             HHHHHHHH-HTTC--CTTCEEEEECSSSSSSHHHHHHHHHHT----------TCSEEEEESCH-HHHHHTT
T ss_pred             HHHHHHHH-HcCC--CCCCEEEEEeCCCCcHHHHHHHHHHHc----------CCCceeecccH-HHHHHhC
Confidence            11111111 2223  455668999997778899999999999          99999999988 8999864

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.51  E-value=1.2e-15  Score=144.37  Aligned_cols=80  Identities=25%  Similarity=0.439  Sum_probs=0.0

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN  132 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n  132 (258)
                      ++++|||||++.||..||||||+|+|+ .++...+..        ++  +...||+||. +|.||..+++.|+..     
T Consensus       386 ~~~~liDvR~~~e~~~ghIpgA~~ip~-~~l~~~~~~--------l~--~~~~iv~~C~-~G~rs~~a~~~L~~~-----  448 (466)
T 3r2u_A          386 NESHILDVRNDNEWNNGHLSQAVHVPH-GKLLETDLP--------FN--KNDVIYVHCQ-SGIRSSIAIGILEHK-----  448 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEeCCHHHHhcCcCCCCEECCH-HHHHHHHhh--------CC--CCCeEEEECC-CChHHHHHHHHHHHc-----
Confidence            578999999999999999999999999 665443221        22  3345889999 899999999999999     


Q ss_pred             cCCCCCCCCeEEecchHHHHHH
Q psy1013         133 AYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       133 ~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                           ||++|++|+||+.+|.+
T Consensus       449 -----G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          449 -----GYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             ----------------------
T ss_pred             -----CCCCEEEecChHHHHhh
Confidence                 99999999999999975

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.48  E-value=4.7e-14  Score=129.98  Aligned_cols=89  Identities=20%  Similarity=0.304  Sum_probs=66.2

Q ss_pred             CCeEEEEecCchhhc-----------cCCcCCceeCCCchhhh--H---------HHHhhHHHhhc--cccC-CCceEEE
Q psy1013          53 DKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLV--K---------EFIESKVHAQS--NATC-DKRRVLI  107 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~--~---------~~~~~~~~~~~--~~~~-~~~~~vV  107 (258)
                      ++.+|||+|++.||.           .||||||+|||+ .++.  .         ..+...+. ..  ...+ .....||
T Consensus       173 ~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~-~~l~~~~~~~~~~~~~~~l~~~~~-~~~~gi~~~~~d~~iv  250 (373)
T 1okg_A          173 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPY-TSHLVTRGDGKVLRSEEEIRHNIM-TVVQGAGDAADLSSFV  250 (373)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCG-GGGEECCSSSCEECCHHHHHHHHH-TTCC-----CCCTTSE
T ss_pred             cCceEEeCCCHHHccccccccccCCcCccCCCcEEecH-HHhhccCCCCCccCCHHHHHHHHH-hhhcCCCcccCCCCEE
Confidence            568999999999999           999999999999 5553  1         00111111 11  1123 0023478


Q ss_pred             EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013         108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      +||+ +|.||..++..|+.+          ||++|++|+||+.+|..
T Consensus       251 vyC~-sG~rs~~a~~~L~~~----------G~~~v~~~~GG~~~W~~  286 (373)
T 1okg_A          251 FSCG-SGVTACINIALVHHL----------GLGHPYLYCGSWSEYSG  286 (373)
T ss_dssp             EECS-SSSTHHHHHHHHHHT----------TSCCCEECSSHHHHHHH
T ss_pred             EECC-chHHHHHHHHHHHHc----------CCCCeeEeCChHHHHhc
Confidence            9999 899999999999988          99999999999999986

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.44  E-value=7.1e-14  Score=132.07  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=77.7

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.||++||.+++.+      +  +|||||++.||..||||||+|+|. +......+...     .   ++...||+|
T Consensus       270 ~~~~~is~~~l~~~l~~------~--~iiD~R~~~~y~~ghIpGA~~i~~-~~~~~~~~~~l-----~---~~~~~vvvy  332 (474)
T 3tp9_A          270 PERVDLPPERVRAWREG------G--VVLDVRPADAFAKRHLAGSLNIPW-NKSFVTWAGWL-----L---PADRPIHLL  332 (474)
T ss_dssp             CEECCCCGGGHHHHHHT------S--EEEECSCHHHHHHSEETTCEECCS-STTHHHHHHHH-----C---CSSSCEEEE
T ss_pred             CCCceeCHHHHHHHhCC------C--EEEECCChHHHhccCCCCeEEECc-chHHHHHHHhc-----C---CCCCeEEEE
Confidence            45678999999999985      3  999999999999999999999999 54444444321     1   233458899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      |. ++. +.+++|.|+.+          ||++|+++.+|+.+|....
T Consensus       333 ~~-~~~-~~~~~~~L~~~----------G~~~v~~~l~G~~~W~~~g  367 (474)
T 3tp9_A          333 AA-DAI-APDVIRALRSI----------GIDDVVDWTDPAAVDRAAP  367 (474)
T ss_dssp             CC-TTT-HHHHHHHHHHT----------TCCCEEEEECGGGGTTCCG
T ss_pred             EC-CCc-HHHHHHHHHHc----------CCcceEEecCcHHHHHhcc
Confidence            98 444 77799999999          9999998666999998743

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.44  E-value=3.7e-13  Score=121.95  Aligned_cols=111  Identities=17%  Similarity=0.324  Sum_probs=77.7

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhHH----------HHhhHH
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVKE----------FIESKV   92 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~~----------~~~~~~   92 (258)
                      .++.+++.+.++++.  ..++++|||+|++.+|.           .||||||+|+|+ .++...          .+...+
T Consensus       185 v~~~~~v~~~v~~~~--~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~-~~~ld~~~~~~~~~~e~l~~~l  261 (327)
T 3utn_X          185 IVDYEEMFQLVKSGE--LAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPY-GSLLDPETKTYPEAGEAIHATL  261 (327)
T ss_dssp             EECHHHHHHHHHTTC--HHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCG-GGGSCTTTCCCCCTTHHHHHHH
T ss_pred             eecHHHHhhhhhccc--ccccceeeccCccceecccccCccccccCCCCCCCcccCh-hhccCCCCCCCCCcHHHHHHHH
Confidence            478889988887630  01358999999999996           499999999999 554311          011111


Q ss_pred             Hhh---ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh-ccc
Q psy1013          93 HAQ---SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ-HQD  158 (258)
Q Consensus        93 ~~~---~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~-~~~  158 (258)
                      .+.   ....-+....||+||+ ||.++...+-.|..+          ||++|.+++|++.+|... .|+
T Consensus       262 ~~~~~~~~~gid~~k~vI~yCg-sGvtA~~~~laL~~l----------G~~~v~lYdGSWsEW~~r~~pe  320 (327)
T 3utn_X          262 EKALKDFHCTLDPSKPTICSCG-TGVSGVIIKTALELA----------GVPNVRLYDGSWTEWVLKSGPE  320 (327)
T ss_dssp             HHHHHHTTCCCCTTSCEEEECS-SSHHHHHHHHHHHHT----------TCCSEEEESSHHHHHHHHHCGG
T ss_pred             HHHHHHhhcCCCCCCCEEEECC-hHHHHHHHHHHHHHc----------CCCCceeCCCcHHHhccccCCc
Confidence            110   0111123344889999 999999988888877          999999999999999763 444

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.06  E-value=1.2e-10  Score=110.08  Aligned_cols=80  Identities=19%  Similarity=0.131  Sum_probs=58.4

Q ss_pred             CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013          53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN  132 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n  132 (258)
                      ++++|||+|++.+|..||||||+|+|. +.....+..      ....  +...||+||. . .++.+++|.|+.+     
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~-~~~~~~~~~------~~~~--~~~~vvly~~-~-~~a~~a~~~L~~~-----  358 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPY-DKNFINQIG------WYLN--YDQEINLIGD-Y-HLVSKATHTLQLI-----  358 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCS-STTHHHHHT------TTCC--TTSCEEEESC-H-HHHHHHHHHHHTT-----
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCc-cHHHHHHHH------hccC--CCCeEEEEEC-C-chHHHHHHHhhhh-----
Confidence            568999999999999999999999999 543343332      1122  3344788998 3 4789999999999     


Q ss_pred             cCCCCCCCCeEE-ecchHHHHH
Q psy1013         133 AYPTLDYPEMYL-LNGGYKQFY  153 (258)
Q Consensus       133 ~yp~lGy~~V~i-L~GG~~~w~  153 (258)
                           ||++|++ |+||...|.
T Consensus       359 -----G~~~v~~~l~g~~~~~~  375 (466)
T 3r2u_A          359 -----GYDDIAGYQLPQSKIQT  375 (466)
T ss_dssp             -----TCCCEEEEECCC-----
T ss_pred             -----hcccccccccCcccccH
Confidence                 9999997 777655544

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=96.84  E-value=0.00071  Score=53.97  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchh------------hccC-CcCCceeCCCchhh--hHHHHhhHHHhhccc
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYE------------YKGG-HIQGALNIYTREHL--VKEFIESKVHAQSNA   98 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~E------------y~~g-HIpGAvnip~~~~l--~~~~~~~~~~~~~~~   98 (258)
                      .++++++..+.+.      +--.|||+|++.|            +..+ +|.|.+|+|. ...  .........  ....
T Consensus        29 ~~~~~d~~~L~~~------Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv-~~~~~~~~~~~~~~--~~l~   99 (156)
T 2f46_A           29 QLTKADAEQIAQL------GIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPV-TARDIQKHDVETFR--QLIG   99 (156)
T ss_dssp             CCCGGGHHHHHHH------TCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCC-CTTTCCHHHHHHHH--HHHH
T ss_pred             CCCHHHHHHHHHC------CCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECcc-CCCCCCHHHHHHHH--HHHH
Confidence            3677888777665      3457999997766            2334 5999999998 321  111111000  0111


Q ss_pred             cCCCceEEEEecCCCCCcHHHHHHH
Q psy1013          99 TCDKRRVLIFHCEYSAERGPTLSRY  123 (258)
Q Consensus        99 ~~~~~~~vV~yc~~s~~rs~~~a~~  123 (258)
                      ..++  .|++||. +|.|+..++..
T Consensus       100 ~~~~--pVlvHC~-sG~Rs~~l~al  121 (156)
T 2f46_A          100 QAEY--PVLAYCR-TGTRCSLLWGF  121 (156)
T ss_dssp             TSCS--SEEEECS-SSHHHHHHHHH
T ss_pred             hCCC--CEEEECC-CCCCHHHHHHH
Confidence            1233  4789999 77788755444

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=90.48  E-value=0.05  Score=44.13  Aligned_cols=63  Identities=17%  Similarity=0.134  Sum_probs=39.8

Q ss_pred             ccccccccccCCCC-CCCCccCHHHHHHHHhcccCC--CCCC----eEEEEecCchhhccCCcCCceeCCCchhh
Q psy1013          16 SKQFILPLVPDGKH-HDLKNISPDTLARLIRGEFND--VVDK----YLIIDCRYPYEYKGGHIQGALNIYTREHL   83 (258)
Q Consensus        16 s~~~~lp~~~~~~~-~~~~~Is~~~L~~~l~~~~~~--~~~~----~~IIDvR~~~Ey~~gHIpGAvnip~~~~l   83 (258)
                      .....+|.++=|.. ..+..+|...+...+..-...  ..+.    .++||||++.||.    |||+|+|. ..+
T Consensus        76 DeVai~PpVsGG~~~~~~~~~~~~~~~~~i~ei~~~~~~~~~~~~~~~liDvRe~~E~~----pgA~~ipr-g~l  145 (168)
T 1v8c_A           76 ATLDLFPPVAGGGFERTFGAFPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLK----VGSLSIPQ-LRV  145 (168)
T ss_dssp             CEEEEECSCCSEEEEEEEETCCHHHHHHHHHHTTCEEEETTEEEETTEEEEEEEEEEEE----ETTEEEEE-EEE
T ss_pred             CEEEEECccccccchhhhhhCCHHHhhhhhhhcCHHHhhCCCccCceEEEECCChhhcC----CCCEEcCh-hHH
Confidence            34555666633332 224567777777666542211  0122    4899999999999    99999997 443

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=88.71  E-value=0.14  Score=42.98  Aligned_cols=36  Identities=53%  Similarity=1.099  Sum_probs=30.1

Q ss_pred             cccccccccccCCCCCCCCceeeechhhHHHHhhhc
Q psy1013         175 RYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ  210 (258)
Q Consensus       175 k~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~  210 (258)
                      +++++..+..+.||.+-|++|++|+|||..|+++|+
T Consensus       143 ~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~  178 (216)
T 3op3_A          143 RCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYM  178 (216)
T ss_dssp             HHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCG
T ss_pred             HHHHHcCcccccccccCCCcEEEECCcHHHHHHhCc
Confidence            455566666778999999999999999999988776

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=86.89  E-value=0.26  Score=38.28  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             CCCceeeechhhHHHHhhhccCC--CCCcccCCCccc
Q psy1013         191 DYPEMYLLNGGYKQFYAQHQDLC--EGGYLPMADPGY  225 (258)
Q Consensus       191 ~ype~~~ld~g~~~~~~~~~~~c--~~~y~~m~~~~~  225 (258)
                      -+.++++|+||+..+.++|+++|  +..|.||....+
T Consensus       110 G~~~v~~L~GG~~~W~~~~~~~~~~~~~~~p~~~~~~  146 (153)
T 2vsw_A          110 SFNSVHLLAGGFAEFSRCFPGLCEGKSTLVPTCISQP  146 (153)
T ss_dssp             HCSCEEEETTHHHHHHHHCGGGEEC------------
T ss_pred             CCCcEEEEeChHHHHHHhChhhhcCCCCcCCCCCCCc
Confidence            46789999999999999999999  556777765444

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=84.21  E-value=0.48  Score=37.17  Aligned_cols=27  Identities=22%  Similarity=0.301  Sum_probs=23.7

Q ss_pred             ceeeechhhHHHHhhhccCC--CCCcccC
Q psy1013         194 EMYLLNGGYKQFYAQHQDLC--EGGYLPM  220 (258)
Q Consensus       194 e~~~ld~g~~~~~~~~~~~c--~~~y~~m  220 (258)
                      ++++|+|||+.|.+.|+..|  +..+.||
T Consensus       127 ~V~~L~GG~~aW~~~~p~~~~~~~~~~p~  155 (157)
T 1whb_A          127 EPLVLEGGYENWLLCYPQYTTNAKVSGPS  155 (157)
T ss_dssp             CCEEESSCHHHHHHHCGGGBSCCCCCCCC
T ss_pred             CeEEEcchHHHHHHHChhhhCCCCCCCCC
Confidence            48999999999999999999  6666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	2e-52
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	3e-48
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	1e-21
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	1e-19
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	1e-08
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-05
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	1e-04
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	1e-04
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	2e-04
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	6e-04
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	0.002
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	0.004

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 2e-52
 Identities = 76/164 (46%), Positives = 111/164 (67%), Gaps = 6/164 (3%)

Query: 11  LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
           LIGDFSK ++   V  GKH DLK ISP+ +A ++ G+F +++ +++IIDCRYPYEY+GGH
Sbjct: 2   LIGDFSKGYLFHTV-AGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGH 60

Query: 71  IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
           I+GA+N++  E +    ++  +      T  KR +++FHCE+S+ERGP + RY+R  DR 
Sbjct: 61  IKGAVNLHMEEEVEDFLLKKPI----VPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRL 116

Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
            N YP L YPE+Y+L GGYK+F+ + Q  CE   Y PM    +K
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFK 160

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 3e-48
 Identities = 85/170 (50%), Positives = 116/170 (68%), Gaps = 5/170 (2%)

Query: 10  NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
            LIGD+SK F+L  V DGKH DLK ISP+T+  L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 1   ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 59

Query: 70  HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
           HI+ A+N+          ++S +   S    DKR +LIFHCE+S+ERGP + R++R  DR
Sbjct: 60  HIKTAVNLPLERDAESFLLKSPIAPCS---LDKRVILIFHCEFSSERGPRMCRFIRERDR 116

Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLR 178
           A N YP+L YPEMY+L GGYK+F+ QH + CE   Y PM    +K     
Sbjct: 117 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKT 166

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 1e-21
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYT---REHLVKEFIESK 91
           I+   L  ++  +   ++    I+D R   +Y+   I  +L++        +   +IE+ 
Sbjct: 3   ITAKELYTMMTDKNISLI----IMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH 58

Query: 92  VHAQSN---ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA--YPTLDYPEMYLLN 146
           +   S            ++    +S+ +   +   LRS   A       T+   E  +L 
Sbjct: 59  LPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLE 118

Query: 147 GGYKQFYAQHQDLCE 161
           GGY+ +   +     
Sbjct: 119 GGYENWLLCYPQYTT 133

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 1e-19
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 12/138 (8%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF------I 88
            +   L   +      +    L++DCR    Y+  HI+ A+N+     +++        +
Sbjct: 18  KTVAWLNEQLELGNERL----LLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 89  ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL--DYPEMYLLN 146
            +      +     RR          E     +     E         L  +    + L 
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133

Query: 147 GGYKQFYAQHQDLCEGGY 164
           GG+ +F A+    CE   
Sbjct: 134 GGFSKFQAEFSLHCETNL 151

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 17/118 (14%)

Query: 33  KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKV 92
            ++S      L+          +  +D R P E+  GH  GA+N+           ++  
Sbjct: 8   SSVSVTVAHDLLL-------AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTD 60

Query: 93  HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
             +  ++   +   I     S  R    +  L              +  +  + GGY 
Sbjct: 61  FLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLH----------AGFTGVKDIVGGYS 108

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 32  LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
            + I+     + ++ +      + +++D R P  +  GH   A ++              
Sbjct: 4   FECINVADAHQKLQEK------EAVLVDIRDPQSFAMGHAVQAFHLTNDT---------- 47

Query: 92  VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
                    D    ++  C Y        ++YL              Y  +Y ++GG++ 
Sbjct: 48  -LGAFMRDNDFDTPVMVMC-YHGNSSKGAAQYLLQ----------QGYDVVYSIDGGFEA 95

Query: 152 FYAQH 156
           +  Q 
Sbjct: 96  WQRQF 100

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 20/138 (14%)

Query: 29  HHDLKN-ISPDTLARLIRGEFNDVVDKYLIIDCRY--------PYEYKGGHIQGALNIYT 79
            H  K  + P  +A  +     +      I+DCRY          +Y   H++ A+    
Sbjct: 3   KHPGKVFLDPSEVADHL----AEYR----IVDCRYSLKIKDHGSIQYAKEHVKSAIRADV 54

Query: 80  REHLVKEFIESKV--HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL 137
             +L K    S         A      +                       R      +L
Sbjct: 55  DTNLSKLVPTSTARHPLPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSL 114

Query: 138 DYPEMYLLNGGYKQFYAQ 155
              + Y++NGG++   A 
Sbjct: 115 GA-DAYVINGGFQACKAA 131

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREH 82
             +++ + +  L+     D   + +I+D R   EY+   I G +++   E 
Sbjct: 22 HTPSLAAEEVQALL-----DARAEAVILDARRFDEYQTMSIPGGISVPGAEL 68

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
           ++ +    LA+              ++D R P EY+ GH+ G+ +
Sbjct: 21 GVERLDLAGLAQWQDEHDRTTY----LLDVRTPEEYEAGHLPGSRS 62

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 23/128 (17%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPY-EYKGGHIQGALNIYTREHLVKE------F 87
           +S D +   +     D   K  +++       Y  GHI GA  I  +             
Sbjct: 9   VSTDWVQEHL----ED--PKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFIS 62

Query: 88  IESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNG 147
            E                ++ +            +       A   +    + ++ L+NG
Sbjct: 63  EEEFAKLMERLGISNDTTVVLYG----------DKNNWWAAYAFWFFKYNGHKDVRLMNG 112

Query: 148 GYKQFYAQ 155
           G +++  +
Sbjct: 113 GRQKWVEE 120

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 8/121 (6%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
           I P  L   +         + +++D      Y  GHI GA  +  +   + +     +  
Sbjct: 11  IEPADLQARLSAP------ELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQP 64

Query: 95  QSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154
                              A              R       +     + LNGG   + A
Sbjct: 65  PREQLESLFG--ELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLA 122

Query: 155 Q 155
           +
Sbjct: 123 E 123

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 10/125 (8%)

Query: 35  ISPDTLARLIRGEFNDVVDKYLIIDCRYPY--------EYKGGHIQGALNIYTREHLVKE 86
           +S   LA  +R     V     ++D  +          EY   H+ GA      E   K 
Sbjct: 10  VSTKWLAESVRA--GKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKA 67

Query: 87  FIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLN 146
                +        D    L    +                 R    +    +  + +LN
Sbjct: 68  SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127

Query: 147 GGYKQ 151
           GG++ 
Sbjct: 128 GGFRN 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.89
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.87
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.87
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.86
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.86
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.84
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.83
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.82
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.82
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.82
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.81
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.81
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.8
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.8
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.72
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.71
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.66
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.65
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	94.96
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	93.74

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-41  Score=278.51  Aligned_cols=174  Identities=52%  Similarity=1.051  Sum_probs=151.2

Q ss_pred             ccccccccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh
Q psy1013          10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE   89 (258)
Q Consensus        10 ~l~gd~s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~   89 (258)
                      .||||++..+.||++ ++.+.++++||+++|.++|++.+.+..++++|||||++.||+.|||+||+|+|. ..+..+++.
T Consensus         1 ~~~~d~~~~~~lp~~-~~~~~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~-~~~~~~~~~   78 (174)
T d1ymka1           1 ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL-ERDAESFLL   78 (174)
T ss_dssp             CBCTTSSSBCCSCCB-CCSSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCS-HHHHHHHHH
T ss_pred             CccccccccccCccc-ccccCCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCc-hHHHHHHHH
Confidence            489999999999999 899999999999999999987654444689999999999999999999999999 555544332


Q ss_pred             hHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCC
Q psy1013          90 SKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMAD  169 (258)
Q Consensus        90 ~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~  169 (258)
                      ...  ......++...||+||++++.|++.+|..|+..++..|.++.+||++||+|+|||++|.+++|++|+        
T Consensus        79 ~~~--~~~~~~~~~~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~yP~lCe--------  148 (174)
T d1ymka1          79 KSP--IAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCE--------  148 (174)
T ss_dssp             TTT--CCC----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEE--------
T ss_pred             Hhh--hhhhhhccCceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHhCchhcc--------
Confidence            110  1112235667799999999999999999999999999999999999999999999999999999998        


Q ss_pred             CCCcccccccccccccCCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccHHHHHHHHhhcccc
Q psy1013         170 PGYKSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTW  239 (258)
Q Consensus       170 ~~~~ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~~~~~~~~~~~~~~  239 (258)
                                                                  |++|+||.|+.|.++|+.||.|+|||
T Consensus       149 --------------------------------------------~~~y~~m~~~~~~~~~~~~~~~~~~~  174 (174)
T d1ymka1         149 --------------------------------------------PQDYRPMNHEAFKDELKTFRLKTRSW  174 (174)
T ss_dssp             --------------------------------------------SSCCCCTTCGGGHHHHHHHHTTSSCC
T ss_pred             --------------------------------------------cCCcccCCCHHHHHHHHHHHhccCCC
Confidence                                                        99999999999999999999999999

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-39  Score=261.93  Aligned_cols=146  Identities=51%  Similarity=1.051  Sum_probs=126.5

Q ss_pred             cccccccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhh
Q psy1013          11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES   90 (258)
Q Consensus        11 l~gd~s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~   90 (258)
                      |||||++++.+|++ ++.++++++||+++|.++|++.+.+..++++|||||++.||+.|||+||+|+|. .+...+.+..
T Consensus         2 ~~~~~~~~~~~~~v-~~~~~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~-~~~~~~~l~~   79 (161)
T d1c25a_           2 LIGDFSKGYLFHTV-AGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHM-EEEVEDFLLK   79 (161)
T ss_dssp             BCTTSSSBCSSCCB-CCSCTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCS-HHHHHHHTTT
T ss_pred             ccccccccccCCcc-CcCCCCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCc-HHHHHHHHhh
Confidence            89999999999999 999999999999999999998665555789999999999999999999999998 4433332221


Q ss_pred             HHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013          91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      .   .......+..+||+||..++.||+.+++.|+..++..+.|+.+||++|++|+|||.+|.+++|++|+
T Consensus        80 ~---~~~~~~~~~~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc~  147 (161)
T d1c25a_          80 K---PIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCE  147 (161)
T ss_dssp             S---CCCCCTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEE
T ss_pred             h---hhhhhhccCCeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCccC
Confidence            1   1222335667799999989999999999999999999999999999999999999999999999999

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.6e-23  Score=159.00  Aligned_cols=105  Identities=15%  Similarity=0.313  Sum_probs=88.6

Q ss_pred             CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013          29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF  108 (258)
Q Consensus        29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~  108 (258)
                      ++.++.||++++.+++++      ++++|||||++.||..||||||+|+|. +++...+..        ..  +...||+
T Consensus         1 m~~~~~Is~~e~~~~l~~------~~~~liDvR~~~e~~~ghI~gA~~ip~-~~l~~~~~~--------~~--~~~~ivv   63 (108)
T d1gmxa_           1 MDQFECINVADAHQKLQE------KEAVLVDIRDPQSFAMGHAVQAFHLTN-DTLGAFMRD--------ND--FDTPVMV   63 (108)
T ss_dssp             CCSCEEECHHHHHHHHHT------TCCEEEECSCHHHHHHCEETTCEECCH-HHHHHHHHH--------SC--TTSCEEE
T ss_pred             CCCCCEeCHHHHHHHHHC------CCeEEEECCCHHHHHhcCCCCcccccc-hhHHHHhhh--------cc--ccCcccc
Confidence            356789999999999987      689999999999999999999999999 665433221        23  3344889


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      ||. ++.|+..++..|+..          ||++|++|+||+.+|.+.+|..+.
T Consensus        64 ~c~-~g~rs~~~a~~L~~~----------G~~~v~~l~GG~~~W~~~~p~e~~  105 (108)
T d1gmxa_          64 MCY-HGNSSKGAAQYLLQQ----------GYDVVYSIDGGFEAWQRQFPAEVA  105 (108)
T ss_dssp             ECS-SSSHHHHHHHHHHHH----------TCSSEEEETTHHHHHHHHCGGGEE
T ss_pred             cCC-CChHHHHHHHHHHHc----------CCCCEEEEcChHHHHHHcCCCccC
Confidence            998 889999999999999          999999999999999888776554

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1.6e-22  Score=151.13  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=81.6

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCC
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYS  113 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s  113 (258)
                      .+|.++|+++|.++     ++++|||||++.||+.||||||+|+|. ..+...+..        ...++...||+||. +
T Consensus         3 v~S~~~l~~~l~~~-----~~~~liDvR~~~e~~~ghIpgAi~~~~-~~~~~~~~~--------~~~~~~~~vv~~~~-~   67 (101)
T d1yt8a2           3 VRTFHDIRAALLAR-----RELALLDVREEDPFAQAHPLFAANLPL-SRLELEIHA--------RVPRRDTPITVYDD-G   67 (101)
T ss_dssp             EECHHHHHHHHHHT-----CCBEEEECSCHHHHTTSBCTTCEECCG-GGHHHHHHH--------HSCCTTSCEEEECS-S
T ss_pred             cCcHHHHHHHHHCC-----CCeEEEECCCHHHHHhccCCCcccccc-cchhhhhhh--------cccccCceeeeccc-h
Confidence            47899999988765     789999999999999999999999999 655443322        12334456889998 8


Q ss_pred             CCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         114 AERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       114 ~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      +.++..+++.|++.          ||++|++|+||+.+|.++
T Consensus        68 g~~s~~~~~~l~~~----------G~~nV~~l~GG~~~W~~a   99 (101)
T d1yt8a2          68 EGLAPVAAQRLHDL----------GYSDVALLDGGLSGWRNA   99 (101)
T ss_dssp             SSHHHHHHHHHHHT----------TCSSEEEETTHHHHHHHT
T ss_pred             hhhHHHHHHHHHHc----------CCCcEEEeCChHHHHHHC
Confidence            89999999999999          999999999999999874

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.2e-23  Score=160.03  Aligned_cols=123  Identities=17%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHH-------HhhccccCCCceEE
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKV-------HAQSNATCDKRRVL  106 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~-------~~~~~~~~~~~~~v  106 (258)
                      +||++||.++|++.    .++++|||||++.||+.||||||+|||. +.+........+       .........+...|
T Consensus         2 ~Is~~eL~~~l~~~----~~~~liiDvR~~~ey~~~hI~gAinip~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i   76 (135)
T d2gwfa1           2 AITAKELYTMMTDK----NISLIIMDARRMQDYQDSCILHSLSVPE-EAISPGVTASWIEAHLPDDSKDTWKKRGNVEYV   76 (135)
T ss_dssp             EECHHHHHHHHHST----TSCEEEEECSCHHHHHHSCBTTCEECCG-GGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEE
T ss_pred             eECHHHHHHHHhcC----CCCEEEEEecCCccccCCccCCeEEeCH-HHcccccchhhhhhhhhHHHHHHHhccCCCCeE
Confidence            69999999999863    2579999999999999999999999998 554321111100       01111122455678


Q ss_pred             EEecCCCCCcHHHHHHHHHHhHHhcc--cCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013         107 IFHCEYSAERGPTLSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       107 V~yc~~s~~rs~~~a~~L~~~~r~~n--~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      |+||+.+..+++.++..++.+.+.+.  .+...|+.+|++|+|||++|.+.||++|.
T Consensus        77 V~yd~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~yp~~c~  133 (135)
T d2gwfa1          77 VLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYTT  133 (135)
T ss_dssp             EEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHHCGGGBS
T ss_pred             EEEeCCCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHhChhhcc
Confidence            99999888777777766666655555  34677899999999999999999999997

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.2e-21  Score=154.51  Aligned_cols=100  Identities=20%  Similarity=0.299  Sum_probs=84.9

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      ..+.||+++|.++++.+     ++++|||||++.||+.||||||+|+|. ..+...+..        +..++...||+||
T Consensus        22 ~~~~Is~~el~~~l~~~-----~~~~liDvR~~~e~~~ghIpGAi~ip~-~~l~~~~~~--------l~~~~~~~iV~~C   87 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDAR-----AEAVILDARRFDEYQTMSIPGGISVPG-AELVLRVAE--------LAPDPRTRVIVNC   87 (136)
T ss_dssp             CCCEECHHHHHHHHHTT-----CSEEEEECSCHHHHHHSBCTTCEECCG-GGHHHHHHH--------HCCSTTSEEEEEC
T ss_pred             CCCccCHHHHHHHHhcC-----CCcEEEEcCChhhccceecCCchhhhh-hHHHHHhhc--------ccccccceEEEEc
Confidence            45689999999999765     789999999999999999999999999 666544322        2334556789999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCC-eEEecchHHHHHHh
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPE-MYLLNGGYKQFYAQ  155 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~-V~iL~GG~~~w~~~  155 (258)
                      . ++.|+..++..|+..          ||.+ |++|+||+.+|...
T Consensus        88 ~-~g~rs~~aa~~L~~~----------G~~~~V~~L~GG~~~W~~~  122 (136)
T d1yt8a1          88 A-GRTRSIIGTQSLLNA----------GIPNPVAALRNGTIGWTLA  122 (136)
T ss_dssp             S-SSHHHHHHHHHHHHT----------TCSSCEEEETTHHHHHHHT
T ss_pred             C-CCCchHHHHHHHHHc----------CCCceEEEeCCcHHHHHHC
Confidence            8 888999999999999          9986 99999999999985

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1.4e-22  Score=158.91  Aligned_cols=118  Identities=23%  Similarity=0.346  Sum_probs=92.1

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      ..++.||+++|.+++++      ++++|||||++.||+.||||||+|+|. ..+...+ ...     .....+...+|||
T Consensus         5 ~~v~~I~~~el~~~~~~------~~v~iIDvR~~~e~~~ghIpgAinip~-~~~~~~~-~~~-----~~~~~~~~~iv~~   71 (132)
T d1t3ka_           5 RSISYITSTQLLPLHRR------PNIAIIDVRDEERNYDGHIAGSLHYAS-GSFDDKI-SHL-----VQNVKDKDTLVFH   71 (132)
T ss_dssp             SSSEEECTTTTTTCCCC------TTEEEEEESCSHHHHSSCCCSSEEECC-SSSSTTH-HHH-----HHTCCSCCEEEES
T ss_pred             cCCCEECHHHHHHHHhC------CCeEEEEccCHHHHHhccCcccceeee-ecccccc-ccc-----ccccccccceEEE
Confidence            34789999999999987      689999999999999999999999999 5553322 211     1112344568899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccC
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG  162 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~  162 (258)
                      |..+..++..++..|.....  +....+||++|++|+||+.+|.+.+...|.+
T Consensus        72 c~~~~~~~~~aa~~l~~~~~--~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~  122 (132)
T d1t3ka_          72 SALSQVRGPTCARRLVNYLD--EKKEDTGIKNIMILERGFNGWEASGKPVCRC  122 (132)
T ss_dssp             SSCCSSSHHHHHHHHHHHHH--HSSSCCCSSEEEEESSTTHHHHHHSCSSCCC
T ss_pred             eccccccchHHHHHHHHHHH--HHHHhcCCCEEEEeCChHHHHHHcCCCcccC
Confidence            99888899999887766522  2345669999999999999999998877773

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.1e-21  Score=152.88  Aligned_cols=121  Identities=25%  Similarity=0.305  Sum_probs=86.7

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecC----------chhhccCCcCCceeCCCchhhhH------------HHHhhH
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRY----------PYEYKGGHIQGALNIYTREHLVK------------EFIESK   91 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~----------~~Ey~~gHIpGAvnip~~~~l~~------------~~~~~~   91 (258)
                      .||++||.+.|++      ++++|||||.          ..+|..||||||+|++. ..+..            ..+...
T Consensus         4 lVs~~wL~~~L~~------~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~-~~~~~~~~~~~~~~p~~~~~~~~   76 (147)
T d1urha1           4 FVGADWLAEHIDD------PEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDI-EALSDHTSPLPHMLPRPETFAVA   76 (147)
T ss_dssp             EECHHHHHTTTTC------TTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCG-GGGSCSSSSSSSCCCCHHHHHHH
T ss_pred             cCcHHHHHHHhCC------CCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeeh-hhhccccccccccCCCHHHHHHH
Confidence            5899999999987      7899999993          35799999999999987 43311            111111


Q ss_pred             HHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCC
Q psy1013          92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPG  171 (258)
Q Consensus        92 ~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~  171 (258)
                      + ..+.+  ++...||+||..++..+.+++|.|+.+          ||++|++|+||+.+|.++.-.... |........
T Consensus        77 l-~~~Gi--~~~~~vVvY~~~~~~~A~r~~~~L~~~----------G~~~V~vLdGG~~~W~~~g~pv~~-~~~~~~~~~  142 (147)
T d1urha1          77 M-RELGV--NQDKHLIVYDEGNLFSAPRAWWMLRTF----------GVEKVSILGGGLAGWQRDDLLLEE-GAVELPEGE  142 (147)
T ss_dssp             H-HHTTC--CTTSEEEEECSSSCSSHHHHHHHHHHT----------TCSCEEEETTHHHHHHHTTCCCBB-SCCCCCCCC
T ss_pred             H-HHhCc--CCCCeEEEEeCCCcccchhHHHHHHhh----------cccceEEeCChHHHHHHcCCCccC-CCCCCCCCc
Confidence            1 12223  445568899986778899999999999          999999999999999886333222 233334445


Q ss_pred             Cccc
Q psy1013         172 YKSR  175 (258)
Q Consensus       172 ~~ak  175 (258)
                      |+++
T Consensus       143 f~a~  146 (147)
T d1urha1         143 FNAA  146 (147)
T ss_dssp             CCCC
T ss_pred             ceec
Confidence            5544

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=8.4e-21  Score=147.99  Aligned_cols=103  Identities=18%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH------------HHhhHHHhhccccCC
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE------------FIESKVHAQSNATCD  101 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~------------~~~~~~~~~~~~~~~  101 (258)
                      .||++||.++|++      ++++|||||++.||..||||||+|+|+ ..+...            ......   ......
T Consensus        10 lIs~~el~~~l~~------~~~viiDvR~~~ey~~gHIpgA~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   79 (135)
T d1e0ca1          10 VIEPADLQARLSA------PELILVDLTSAARYAEGHIPGARFVDP-KRTQLGQPPAPGLQPPREQLESLF---GELGHR   79 (135)
T ss_dssp             EECHHHHHTTTTC------TTEEEEECSCHHHHHHCBSTTCEECCG-GGGSCCCTTCTTSCCCHHHHHHHH---HHHTCC
T ss_pred             EeeHHHHHHHhcC------CCeEEEECCCHHHHhcccCccccccch-hhhhhcccccchhhcchhhhhhhh---cccccc
Confidence            3899999999987      789999999999999999999999998 443110            111000   011123


Q ss_pred             CceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         102 KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       102 ~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      ....+|+||..++.++.++++.|+.+          ||++|++|+||+.+|.++.
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~~~l~~~----------G~~~V~~l~GG~~~W~~~g  124 (135)
T d1e0ca1          80 PEAVYVVYDDEGGGWAGRFIWLLDVI----------GQQRYHYLNGGLTAWLAED  124 (135)
T ss_dssp             TTCEEEEECSSSSHHHHHHHHHHHHT----------TCCCEEEETTHHHHHHHTT
T ss_pred             ccccccccccccCccchhhHHHHHhc----------cCCCEEEecChHHHHHHCC
Confidence            34456677776888899999999999          9999999999999999853

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.82  E-value=2.1e-20  Score=147.50  Aligned_cols=101  Identities=21%  Similarity=0.380  Sum_probs=83.5

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCC---cCCceeCCCchhhhHHHHhhHHHhhccccCCCceEE
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH---IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVL  106 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gH---IpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~v  106 (258)
                      .++..||++++.++|.++     ++++|||||++.||+.+|   |+||+|+|. ..+...+..      ...  ++...|
T Consensus        20 ~~~~~Isp~e~~~ll~~~-----~~~~lIDvR~~~E~~~~hip~i~~a~~ip~-~~l~~~~~~------~~~--~~~~~i   85 (137)
T d1qxna_          20 ADMVMLSPKDAYKLLQEN-----PDITLIDVRDPDELKAMGKPDVKNYKHMSR-GKLEPLLAK------SGL--DPEKPV   85 (137)
T ss_dssp             HSSEEECHHHHHHHHHHC-----TTSEEEECCCHHHHHHTCEECCSSEEECCT-TTSHHHHHH------HCC--CTTSCE
T ss_pred             ccCCEEcHHHHHHHHHcC-----cCEEEEECCcHHHHHHhccccccccccCCc-ccccccccc------ccc--Ccccce
Confidence            467899999999999764     789999999999999999   567899998 655433221      112  334458


Q ss_pred             EEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         107 IFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       107 V~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      |+||. +|.||..++..|+..          ||++|++|+||+.+|...
T Consensus        86 vvyC~-~G~rs~~aa~~L~~~----------G~~nV~~l~GG~~~W~~~  123 (137)
T d1qxna_          86 VVFCK-TAARAALAGKTLREY----------GFKTIYNSEGGMDKWLEE  123 (137)
T ss_dssp             EEECC-SSSCHHHHHHHHHHH----------TCSCEEEESSCHHHHHHT
T ss_pred             eeeec-ccchHHHHHHHHHHc----------CCCcEEEecCHHHHHHHc
Confidence            89999 889999999999999          999999999999999984

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=4.1e-21  Score=150.26  Aligned_cols=101  Identities=18%  Similarity=0.290  Sum_probs=83.0

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC  110 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc  110 (258)
                      .++.|+++++.+++.++    ..+++|||||++.||..||||||+|+|. .++......        ...++...||+||
T Consensus        21 ~~~~I~~~e~~~~l~~~----~~~~~liDvR~~~e~~~ghipgai~~p~-~~~~~~~~~--------~~~~~~~~ivl~C   87 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEH----DRTTYLLDVRTPEEYEAGHLPGSRSTPG-GQLVQETDH--------VASVRGARLVLVD   87 (130)
T ss_dssp             TCEEECHHHHHHHHHCT----TSCEEEEECSCHHHHHHCBCTTCEECCH-HHHHHSHHH--------HCCSBTCEEEEEC
T ss_pred             CCcccCHHHHHHHHHcc----CCCEEEEECCCcHHHhcCccCCcccccc-ccccccccc--------ccCCccceEEeec
Confidence            46789999999999853    1468999999999999999999999999 555432211        1223445588999


Q ss_pred             CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013         111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus       111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                      . +|.||..++..|+.+          || +|++|+||+.+|..+.
T Consensus        88 ~-~G~rS~~aa~~L~~~----------G~-~v~~l~GG~~aw~~~~  121 (130)
T d1yt8a4          88 D-DGVRANMSASWLAQM----------GW-QVAVLDGLSEADFSER  121 (130)
T ss_dssp             S-SSSHHHHHHHHHHHT----------TC-EEEEECSCCGGGCCBC
T ss_pred             C-CCccHHHHHHHHHHc----------CC-CeEEEcCchHHHHHhc
Confidence            8 899999999999999          99 7999999999998753

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=3.1e-20  Score=149.60  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=83.0

Q ss_pred             CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013          30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH  109 (258)
Q Consensus        30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y  109 (258)
                      +..+.||+++|.+++++      ++.+|||||++.||..||||||+|+|. ..+......        ..++  ..||+|
T Consensus         2 P~~~~Is~~el~~~l~~------~~~~ivDvR~~~e~~~ghIpga~~~~~-~~~~~~~~~--------~~~~--~~vv~~   64 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGE------PGTRVLDFTASANYAKRHIPGAAWVLR-SQLKQALER--------LGTA--ERYVLT   64 (157)
T ss_dssp             CCCCEECHHHHHHHTTS------TTEEEEECSCHHHHHHCBCTTCEECCG-GGHHHHHHH--------HCCC--SEEEEE
T ss_pred             CCCCEECHHHHHHHHhC------CCeEEEEeCCHHHHhhcccccceeccc-ccccccccc--------cccC--cceeec
Confidence            35678999999999986      679999999999999999999999999 555433221        2223  347899


Q ss_pred             cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      |. ++.+|..+++.|+..          ||.+|++|+||+.+|.+.
T Consensus        65 c~-~g~rs~~~a~~l~~~----------G~~~v~~L~GG~~~W~~a   99 (157)
T d1yt8a3          65 CG-SSLLARFAVAEVQAL----------SGKPVFLLDGGTSAWVAA   99 (157)
T ss_dssp             CS-SSHHHHHHHHHHHHH----------HCSCEEEETTHHHHHHHT
T ss_pred             cC-CcchHHHHHHHHhcc----------cCceEEEecCCHHHHhhC
Confidence            99 889999999999999          999999999999999985

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=1.3e-20  Score=149.86  Aligned_cols=121  Identities=14%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecC-chhhccCCcCCceeCCCchhhh----------HHHHhhHHHhhccccCCC
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRY-PYEYKGGHIQGALNIYTREHLV----------KEFIESKVHAQSNATCDK  102 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~-~~Ey~~gHIpGAvnip~~~~l~----------~~~~~~~~~~~~~~~~~~  102 (258)
                      .||++||.++|++      ++++|||||. +.+|..||||||+|+++ ....          .+.+...+. .+.+  ++
T Consensus         8 lVs~~~l~~~l~~------~~v~iiDvr~~~~~y~~gHIPgAi~~~~-~~~~~~~~~~~l~~~~~l~~~~~-~~Gi--~~   77 (143)
T d1uara1           8 LVSTDWVQEHLED------PKVRVLEVDEDILLYDTGHIPGAQKIDW-QRDFWDPVVRDFISEEEFAKLME-RLGI--SN   77 (143)
T ss_dssp             EECHHHHHTTTTC------TTEEEEEECSSTTHHHHCBCTTCEEECH-HHHHBCSSSSSBCCHHHHHHHHH-HTTC--CT
T ss_pred             cCcHHHHHHHhCC------CCeEEEECCCCHHHHhcCCCCCcccccc-cccccccccccchhhHHHHHHhh-hhcc--CC
Confidence            6999999999987      7899999995 67899999999999987 3221          111111111 1122  44


Q ss_pred             ceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCccc
Q psy1013         103 RRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSR  175 (258)
Q Consensus       103 ~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak  175 (258)
                      ...||+||..++..+.++++.|+.+          ||++|++|+||+.+|..+...... +...+...+|.++
T Consensus        78 ~~~iVvy~~~~~~~a~~~~~~l~~~----------G~~~V~vldGG~~~W~~~g~p~~~-~~~~~~~~~~~~~  139 (143)
T d1uara1          78 DTTVVLYGDKNNWWAAYAFWFFKYN----------GHKDVRLMNGGRQKWVEEGRPLTT-EVPSYPPGRYEVP  139 (143)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHHHHT----------TCSCEEEETTHHHHHHHHTCCCBC-CCCCCCCCCCCCC
T ss_pred             CceEEEecCCCcccchhHHHHHHHh----------CCceEEEEcCcHHHHHHCCCCccC-CCCCCCCcccccc
Confidence            5568999985555788899999999          999999999999999987433333 1333344455544

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.81  E-value=5.2e-20  Score=145.12  Aligned_cols=103  Identities=23%  Similarity=0.368  Sum_probs=80.5

Q ss_pred             CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc--------cCCcCCceeCCCchhhhHH--------HHhhHHHh
Q psy1013          31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK--------GGHIQGALNIYTREHLVKE--------FIESKVHA   94 (258)
Q Consensus        31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~--------~gHIpGAvnip~~~~l~~~--------~~~~~~~~   94 (258)
                      .-..+|.++|.+.+.+      ++++|||+|++.||.        .||||||+|+|+ ..+...        .+...+ .
T Consensus        10 ~~~~~s~d~l~~~l~~------~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~-~~~~~~~~~~~~~~~l~~~~-~   81 (136)
T d1e0ca2          10 DEPTASRDYLLGRLGA------ADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW-TAAMDPSRALRIRTDIAGRL-E   81 (136)
T ss_dssp             STTBCCHHHHHHHTTC------TTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCG-GGGEEGGGTTEECTTHHHHH-H
T ss_pred             CCceEcHHHHHHhhCC------CCeEEEECcChHHhcccccccccCCcchhHhhhhh-hhhhccccccchhHHHhhhh-h
Confidence            4457999999999987      789999999999996        689999999998 444211        011111 1


Q ss_pred             hccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          95 QSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        95 ~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      ...+  ++...||+||+ ++.+|..+++.|+.+          ||++|++|+||+.+|.+
T Consensus        82 ~~gi--~~~~~vV~yC~-~G~~a~~~~~~l~~~----------G~~~v~~ydGg~~eW~~  128 (136)
T d1e0ca2          82 ELGI--TPDKEIVTHCQ-THHRSGLTYLIAKAL----------GYPRVKGYAGSWGEWGN  128 (136)
T ss_dssp             HTTC--CTTSEEEEECS-SSSHHHHHHHHHHHT----------TCSCEEECSSHHHHHTT
T ss_pred             hccc--CCCCceEEeCC-ChHHHHHHHHHHHHc----------CCCCcEEecCCHHHHhc
Confidence            1122  34456899999 899999999999999          99999999999999954

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-20  Score=150.83  Aligned_cols=117  Identities=18%  Similarity=0.278  Sum_probs=78.5

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHH----------hhHHHhhccccCCC
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI----------ESKVHAQSNATCDK  102 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~----------~~~~~~~~~~~~~~  102 (258)
                      ..||++||.++|+.+    .++++|||||++.||+.||||||+|++.+..+..+..          .............+
T Consensus        16 ~~~s~e~L~~~l~~~----~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (154)
T d1hzma_          16 ISKTVAWLNEQLELG----NERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCG   91 (154)
T ss_dssp             SBSCCCCHHHHHHHC----SSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTT
T ss_pred             CccCHHHHHHHHhcC----CCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcHHHHHHHhhcCC
Confidence            459999999999753    1679999999999999999999999998433322110          00000000111233


Q ss_pred             ceEEEEecCCCCC------cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013         103 RRVLIFHCEYSAE------RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE  161 (258)
Q Consensus       103 ~~~vV~yc~~s~~------rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~  161 (258)
                      ...||+||+.+..      .+..+.+.++.+..        .+.+|++|+|||++|..+||++||
T Consensus        92 ~~~VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~v~iL~GG~~~w~~~yp~lcE  148 (154)
T d1hzma_          92 TDTVVLYDESSSDWNENTGGESLLGLLLKKLKD--------EGCRAFYLEGGFSKFQAEFSLHCE  148 (154)
T ss_dssp             SSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHH--------TTCCCEECCCCHHHHHHHHCSBCC
T ss_pred             CCeEEEEcCCCchhhhhHHHHHHHHHHHHHHHh--------cCCeEEEEeCcHHHHHHHChHHhc
Confidence            4468999985321      13344445444422        345899999999999999999999

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=2e-20  Score=144.03  Aligned_cols=99  Identities=21%  Similarity=0.340  Sum_probs=77.9

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhh-------HHHHhhHHHhhccccCCCceE
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLV-------KEFIESKVHAQSNATCDKRRV  105 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~-------~~~~~~~~~~~~~~~~~~~~~  105 (258)
                      ..|+++++.++++.       +.+|||||++.||..||||||+|+|+ ..+.       ..++...     ....++...
T Consensus         8 ~~i~~~~a~~l~~~-------g~~liDvR~~~e~~~ghi~ga~~ip~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~   74 (119)
T d1tq1a_           8 SSVSVTVAHDLLLA-------GHRYLDVRTPEEFSQGHACGAINVPY-MNRGASGMSKNTDFLEQV-----SSHFGQSDN   74 (119)
T ss_dssp             EEEEHHHHHHHHHH-------TCCEEEESCHHHHHHCCBTTBEECCS-CCCSTTTCCCTTTHHHHH-----TTTCCTTSS
T ss_pred             CccCHHHHHHHHHC-------cCEEEECCCHHHHHcCCCCCccchhh-cccccccccccHHHHHHH-----HHhcCCCcE
Confidence            46899999999986       35789999999999999999999997 3321       1122111     111133445


Q ss_pred             EEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013         106 LIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus       106 vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                      ||+||. +|.||..++..|...          ||++|++|+||+.+|.+.
T Consensus        75 iv~~C~-~G~rs~~a~~~L~~~----------G~~nv~~l~GG~~~W~~~  113 (119)
T d1tq1a_          75 IIVGCQ-SGGRSIKATTDLLHA----------GFTGVKDIVGGYSAWAKN  113 (119)
T ss_dssp             EEEEES-SCSHHHHHHHHHHHH----------HCCSEEEEECCHHHHHHH
T ss_pred             EEEEcC-CcCcHHHHHHHHHhc----------ccCCeEEecChHHHHHHC
Confidence            889998 899999999999999          999999999999999875

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=3.2e-19  Score=142.62  Aligned_cols=108  Identities=18%  Similarity=0.184  Sum_probs=78.5

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecC--------chhhccCCcCCceeCCCchhhhH------------HHHhhHH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRY--------PYEYKGGHIQGALNIYTREHLVK------------EFIESKV   92 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~--------~~Ey~~gHIpGAvnip~~~~l~~------------~~~~~~~   92 (258)
                      ..||++||.++|++..  ..++++|||||.        ..+|..||||||+|+++ +.+..            ..+...+
T Consensus         8 ~lVs~~wL~~~L~~~~--~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~-~~~~~~~~~~~~~~~~~~~~~~~l   84 (149)
T d1rhsa1           8 ALVSTKWLAESVRAGK--VGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDI-EECRDKASPYEVMLPSEAGFADYV   84 (149)
T ss_dssp             SEECHHHHHHHHHTTC--CBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCT-TTSSCTTSSSSSCCCCHHHHHHHH
T ss_pred             CccCHHHHHHHHhccC--CCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccH-HhhcccccchhhhhhhhHHHHHHH
Confidence            4589999999998531  115899999993        46899999999999997 44311            1111111


Q ss_pred             HhhccccCCCceEEEEecCC--CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013          93 HAQSNATCDKRRVLIFHCEY--SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH  156 (258)
Q Consensus        93 ~~~~~~~~~~~~~vV~yc~~--s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~  156 (258)
                       ..+.+  +....||+||..  ++..+.+++|.|+.+          ||++|++|+||+.+|.++.
T Consensus        85 -~~~Gi--~~~~~vVvy~~~~~~~~~a~r~~w~L~~~----------G~~~V~vLdGG~~~W~~~G  137 (149)
T d1rhsa1          85 -GSLGI--SNDTHVVVYDGDDLGSFYAPRVWWMFRVF----------GHRTVSVLNGGFRNWLKEG  137 (149)
T ss_dssp             -HHTTC--CTTCEEEEECCCSSSCSSHHHHHHHHHHT----------TCCCEEEETTHHHHHHHTT
T ss_pred             -hhhhc--cCCceeEEeeccCCcchhhhHHHHHHHHc----------CCCceEEeCCcHHHHHHCc
Confidence             11222  344557888753  356789999999999          9999999999999999863

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=3.1e-18  Score=136.12  Aligned_cols=102  Identities=14%  Similarity=0.287  Sum_probs=80.1

Q ss_pred             CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc------------cCCcCCceeCCCchhhh--------HHHHhhHH
Q psy1013          33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK------------GGHIQGALNIYTREHLV--------KEFIESKV   92 (258)
Q Consensus        33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~------------~gHIpGAvnip~~~~l~--------~~~~~~~~   92 (258)
                      ..+|.+++.+.+++      ++++|||+|++.||.            .||||||+|+|+ ..+.        .+.+....
T Consensus        11 ~i~~~~ev~~~l~~------~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~-~~~~~~~~~~~~~~~l~~~~   83 (144)
T d1rhsa2          11 LLKTYEQVLENLES------KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPF-MNFLTEDGFEKSPEELRAMF   83 (144)
T ss_dssp             GEECHHHHHHHHHH------CCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCG-GGGBCTTSCBCCHHHHHHHH
T ss_pred             HeecHHHHHHHhcC------CCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcch-hhhhhhhcccCCHHHHHHHH
Confidence            46899999999988      789999999999995            699999999998 5442        11111111


Q ss_pred             HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013          93 HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ  155 (258)
Q Consensus        93 ~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~  155 (258)
                       ....+..+  ..||+||+ +|.||..+++.|+.+          ||++|.+++||+.+|...
T Consensus        84 -~~~gi~~~--~~iI~yC~-sG~~A~~~~~~l~~l----------G~~~v~~YdGsw~eW~~~  132 (144)
T d1rhsa2          84 -EAKKVDLT--KPLIATCR-KGVTACHIALAAYLC----------GKPDVAIYDGSWFEWFHR  132 (144)
T ss_dssp             -HHTTCCTT--SCEEEECS-SSSTHHHHHHHHHHT----------TCCCCEEESSHHHHHHHH
T ss_pred             -HHcCCCCC--CCEEEEec-ccchHHHHHHHHHHc----------CCCCCEEeCCCHHHHhhc
Confidence             11223333  34899998 899999999999888          999999999999999875

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.72  E-value=8.4e-18  Score=135.21  Aligned_cols=107  Identities=20%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEec--------CchhhccCCcCCceeCCCchhhhH--------------
Q psy1013          28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCR--------YPYEYKGGHIQGALNIYTREHLVK--------------   85 (258)
Q Consensus        28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR--------~~~Ey~~gHIpGAvnip~~~~l~~--------------   85 (258)
                      ++..-..||++||.+++.        +++|||||        ...+|..||||||+++++ +....              
T Consensus         3 ~~p~~~lvs~~~L~~~l~--------d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~-~~~l~~~~~~~~~~~~lP~   73 (156)
T d1okga1           3 KHPGKVFLDPSEVADHLA--------EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADV-DTNLSKLVPTSTARHPLPP   73 (156)
T ss_dssp             SSTTCCEECHHHHTTCGG--------GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCT-TTTSCCCCTTCCCSSCCCC
T ss_pred             CCCCCcEeCHHHHHHhcC--------CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCH-HHhcccccCCCCCccccCC
Confidence            344445799999998775        38999999        367899999999999986 32111              


Q ss_pred             -HHHhhHHHhhccccCCCceEEEEecCCCC-CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013          86 -EFIESKVHAQSNATCDKRRVLIFHCEYSA-ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ  157 (258)
Q Consensus        86 -~~~~~~~~~~~~~~~~~~~~vV~yc~~s~-~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~  157 (258)
                       ..+...+ ..+.+  +....||+||+..+ ..+++++|.|+.+          |+ +|++|+||+.+|.++..
T Consensus        74 ~~~~~~~l-~~lGI--~~~~~VVvYd~~~g~~~A~R~~w~L~~~----------G~-~v~iLdGG~~aW~~~G~  133 (156)
T d1okga1          74 CAEFIDWC-MANGM--AGELPVLCYDDECGAMGGCRLWWMLNSL----------GA-DAYVINGGFQACKAAGL  133 (156)
T ss_dssp             HHHHHHHH-HHTTC--SSSSCEEEECSSTTTTTHHHHHHHHHHH----------TC-CEEEETTTTHHHHTTTC
T ss_pred             HHHHHHHH-Hhccc--cCCceEEEEeCCCCchHHHHHHHHHHHc----------CC-eeEEeCCCHHHHHHCCC
Confidence             1111111 12223  34455889986444 5789999999999          98 79999999999998643

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.5e-18  Score=131.59  Aligned_cols=98  Identities=21%  Similarity=0.346  Sum_probs=75.0

Q ss_pred             ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhH-------HHHhhHHHhh
Q psy1013          34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVK-------EFIESKVHAQ   95 (258)
Q Consensus        34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~-------~~~~~~~~~~   95 (258)
                      .++.+++...++.      ++.+|||+|++.+|.           .||||||+|+|+ ..+..       ..+...+ ..
T Consensus         5 ~~~~~ev~~~~~~------~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~-~~~~~~~~~~~~~~~~~~~-~~   76 (120)
T d1urha2           5 VVKVTDVLLASHE------NTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPW-TELVREGELKTTDELDAIF-FG   76 (120)
T ss_dssp             BCCHHHHHHHHHH------TCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCG-GGGBSSSSBCCHHHHHHHH-HT
T ss_pred             HccHHHHHHHhhC------CCcEEEeCCCHHHcCcccCCcccccccccccccchhch-hhcccccccCCHHHhhhhh-hh
Confidence            4688999988887      789999999999996           699999999998 44311       1111111 11


Q ss_pred             ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHH
Q psy1013          96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQF  152 (258)
Q Consensus        96 ~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w  152 (258)
                      ...  ++...||+||+ +|.||..+++.|+.+          ||++|++|+||+.+|
T Consensus        77 ~g~--~~~~~ii~yC~-sG~~A~~~~~~L~~l----------G~~~v~~y~Gs~~eW  120 (120)
T d1urha2          77 RGV--SYDKPIIVSCG-SGVTAAVVLLALATL----------DVPNVKLYDGAWSEW  120 (120)
T ss_dssp             TTC--CSSSCEEEECC-SSSTHHHHHHHHHHT----------TCSSCEEECCSCCC-
T ss_pred             ccc--CccCceEEEcc-chhHHHHHHHHHHHc----------CCCCceEcCCChhhC
Confidence            122  34445889999 899999999999988          999999999999988

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.66  E-value=5.1e-17  Score=128.16  Aligned_cols=90  Identities=19%  Similarity=0.293  Sum_probs=65.4

Q ss_pred             CCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhH-----------HHHhhHHHhhccc--cCCCceEEEE
Q psy1013          53 DKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVK-----------EFIESKVHAQSNA--TCDKRRVLIF  108 (258)
Q Consensus        53 ~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~-----------~~~~~~~~~~~~~--~~~~~~~vV~  108 (258)
                      ++++|||+|++.||.           .||||||+|+|+ ..+..           ..+.......+..  .......||+
T Consensus        11 p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~   89 (139)
T d1okga2          11 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPY-TSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF   89 (139)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCG-GGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             CCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccc-hhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEE
Confidence            689999999999997           799999999998 43210           0111111111000  1122334789


Q ss_pred             ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013         109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus       109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      ||+ +|.+|..+++.|+.+          ||++|++++||+.+|.+
T Consensus        90 yC~-sG~~Aa~~~~~L~~~----------G~~~v~vydGsw~eW~~  124 (139)
T d1okga2          90 SCG-SGVTACINIALVHHL----------GLGHPYLYCGSWSEYSG  124 (139)
T ss_dssp             ECS-SSSTHHHHHHHHHHT----------TSCCCEECSSHHHHHHH
T ss_pred             ECC-CcHHHHHHHHHHHHh----------CCCCccCCCCCHHHHhC
Confidence            999 899999999999888          99999999999999966

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.2e-16  Score=126.27  Aligned_cols=101  Identities=26%  Similarity=0.330  Sum_probs=71.1

Q ss_pred             CHHHHHHHHhcccCCCCCCeEEEEecCchhhc----------------cCCcCCceeCCCchhhhH--------HHHhhH
Q psy1013          36 SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK----------------GGHIQGALNIYTREHLVK--------EFIESK   91 (258)
Q Consensus        36 s~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~----------------~gHIpGAvnip~~~~l~~--------~~~~~~   91 (258)
                      ..+++.+.+..-.   .++.+|||+|++.||.                .||||||+|+|+ .++..        ..+...
T Consensus         5 ~~~~v~~~~~~~~---~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~-~~~~~~~~~~~~~~~~~~~   80 (141)
T d1uara2           5 YRDDVLEHIIKVK---EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPW-AKAVNPDGTFKSAEELRAL   80 (141)
T ss_dssp             CHHHHHHHHHHHH---TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCG-GGGBCTTSCBCCHHHHHHH
T ss_pred             cHHHHHHHHHHhh---CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCcccccc-ccccccccccccHHHHHHH
Confidence            3455555543210   0578999999999996                699999999998 55421        111111


Q ss_pred             HHhhccccCCCceEEEEecCCCCCcHHHHHHHHHH-hHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013          92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRS-EDRAHNAYPTLDYPEMYLLNGGYKQFYA  154 (258)
Q Consensus        92 ~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~-~~r~~n~yp~lGy~~V~iL~GG~~~w~~  154 (258)
                      . ....+  ++...||+||+ +|.++..+++.|+. +          ||++|++|+||+.+|.+
T Consensus        81 ~-~~~gi--~~d~~vV~yC~-~G~~As~~~~~l~~~~----------G~~~v~~ydGs~~eW~~  130 (141)
T d1uara2          81 Y-EPLGI--TKDKDIVVYCR-IAERSSHSWFVLKYLL----------GYPHVKNYDGSWTEWGN  130 (141)
T ss_dssp             H-GGGTC--CTTSEEEEECS-SHHHHHHHHHHHHTTS----------CCSCEEEESSHHHHHTT
T ss_pred             H-HHhCC--CCCCeEEEEec-CcchHHHHHHHHHHHc----------CCCCeeEeCCcHHHHhc
Confidence            1 11222  34455899999 88899888888886 6          99999999999999965

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00051  Score=54.21  Aligned_cols=38  Identities=58%  Similarity=1.201  Sum_probs=32.2

Q ss_pred             ccccccccccccCCCCCCCCceeeechhhHHHHhhhcc
Q psy1013         174 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQD  211 (258)
Q Consensus       174 ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~  211 (258)
                      ++++++.++..+.++.+.+++||+|+|||+.|+++||+
T Consensus       108 a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~yP~  145 (174)
T d1ymka1         108 CRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPN  145 (174)
T ss_dssp             HHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGG
T ss_pred             HHHHHHHHHHhhhccccCCceEEEecCcHHHHHHhCch
Confidence            35556667777899999999999999999999998874

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0016  Score=50.58  Aligned_cols=53  Identities=47%  Similarity=1.018  Sum_probs=47.0

Q ss_pred             cccccccccccCCCCCCCCceeeechhhHHHHhhhccCC-CCCcccCCCcccHH
Q psy1013         175 RYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC-EGGYLPMADPGYKS  227 (258)
Q Consensus       175 k~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c-~~~y~~m~~~~~~~  227 (258)
                      +.+++.++..+.++.+.+++||+|+|||+.|+++|+++| |++|+||.|++|++
T Consensus       108 ~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc~p~~y~~m~~~~~~~  161 (161)
T d1c25a_         108 RYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKE  161 (161)
T ss_dssp             HHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEESSCCCCCCCCCCCC
T ss_pred             HHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCccCCCCcccCCchhccC
Confidence            445566666778999999999999999999999999999 99999999999863

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0041  Score=47.16  Aligned_cols=21  Identities=29%  Similarity=0.660  Sum_probs=20.1

Q ss_pred             CceeeechhhHHHHhhhccCC
Q psy1013         193 PEMYLLNGGYKQFYAQHQDLC  213 (258)
Q Consensus       193 pe~~~ld~g~~~~~~~~~~~c  213 (258)
                      +++++|||||+.|.++||++|
T Consensus       127 ~~v~iL~GG~~~w~~~yp~lc  147 (154)
T d1hzma_         127 CRAFYLEGGFSKFQAEFSLHC  147 (154)
T ss_dssp             CCCEECCCCHHHHHHHHCSBC
T ss_pred             CeEEEEeCcHHHHHHHChHHh
Confidence            579999999999999999999

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.017  Score=42.37  Aligned_cols=29  Identities=21%  Similarity=0.275  Sum_probs=24.8

Q ss_pred             CCCCCCCCceeeechhhHHHHhhhccCCC
Q psy1013         186 AYPTLDYPEMYLLNGGYKQFYAQHQDLCE  214 (258)
Q Consensus       186 ~~p~l~ype~~~ld~g~~~~~~~~~~~c~  214 (258)
                      ........++++|+|||++|.++||++|-
T Consensus       105 ~~~~~~~~~v~iL~GG~~~w~~~yp~~c~  133 (135)
T d2gwfa1         105 ESKTVLRNEPLVLEGGYENWLLCYPQYTT  133 (135)
T ss_dssp             CCSSCCSSCCEEETTHHHHHHHHCGGGBS
T ss_pred             cccccCCCcEEEEechHHHHHHhChhhcc
Confidence            34456678999999999999999999993