Psyllid ID: psy1016

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE
ccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHcccHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEcccccccccEEEEEcccccHHHHHHHHHHHHccccHHHHc
ccHHHHHHHHHHHcccEEEEcEcccccEcccEEEEcccccccccccEEccEEEcccccEccccccccccccccHHHHHHHHHHHHHHHHHHHcHcHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHccccccEEEEEEccccccccccccccccccHHHcccccccccccccccccccccEEEEEHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHHcccEEccccccccccHHHHHHHHHccccccccccccccEcccccHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccccHHHHccHHcccEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcHHHHHHHHcHHHcccEEcccccccccHHHHHccccccccccccccHHHcccccccHHHccccccEEEcccccccEEEEEEcccccHHHHHHHHHHHcccccHHHcc
mgvpaffrwlsrkypsvIVHCvedkpqevngqkipfdsskpnpngmefdnlyldmngiihpcthpedkpapkdeDEMMVAIFECIDRLFRIVRPRKLLYMAIdgvaprakmnqQRSRRFRASKETAEKIAEVARIREKLLadgcilppekekgshfdsncitpgtpFMARLSACLHYYIHdrlnndpgwkGIKVILsdanvpgegeHKIMDYIRkqraqpdhdpntqhclcgaDADLIMLGlathepnftiireefkpnqarpcdvcgqmghemkecvgldaepnpesvitfgseVEFIFVRLSVLREYLEKelampnlpfpysferALDDWVFMCFFvgndflphlpsleirEGAVDRLVNLYKKTVYKTQEQLRQeengggggrgvkrsfddvdesseeeesndevRLWEDgfkdryyeskfdvpkddiAFRLMVGHEYVLGLCWVLKYYYQgcrswkwyfpfhyapfasdfiniaevdtnfetgtqpvnnnRILKFILYHFDNKMFFWNKSLINIAEvdtnfetgtqpvnnRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRmltypgfltdsgdVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAqstkapsfipggqfapqdspiidfypedfkidlngKKFAWQGvallpfvdEERLHKALApyyeklsveese
mgvpaffrwlsrkypSVIVHCVEdkpqevngqkipfdsskpnpnGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAidgvaprakmnqqrsrrfrasketaEKIAEVARIREKLLADGCILppekekgshfdsnCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVyktqeqlrqeengggggrgvkRSFDdvdesseeeesndevrlwedgfkdryYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFetgtqpvnNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPgfltdsgdvkLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAaqstkapsfipgGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALApyyeklsveese
MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENgggggrgVKRsfddvdesseeeesndeVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNihllillvlrswlvslhVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETmfkmrnkmkkrrerqmkmAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE
***PAFFRWLSRKYPSVIVHCVE************************FDNLYLDMNGIIHPC**************MMVAIFECIDRLFRIVRPRKLLYMAIDGVA***********************AEVARIREKLLADGCILP*******HFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYI************TQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYK**************************************RLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMME**************************************************SPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYE********
MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR***********************************SHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQ*******************VITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDV*****AFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKR*****************IPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLS*****
MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPR*****************AEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENGGGGGRGVKRSF****************RLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMR********************PSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYE********
*GVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPE*EKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVG*************GSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLS*****
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MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYEKLSVEESE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query718 2.2.26 [Sep-21-2011]
Q9VM71 908 5'-3' exoribonuclease 2 h yes N/A 0.522 0.412 0.807 0.0
Q9DBR1 951 5'-3' exoribonuclease 2 O yes N/A 0.515 0.389 0.76 1e-169
Q9H0D6 950 5'-3' exoribonuclease 2 O yes N/A 0.515 0.389 0.754 1e-168
Q5R4L5 950 5'-3' exoribonuclease 2 O yes N/A 0.515 0.389 0.754 1e-167
Q5ZIP4 949 5'-3' exoribonuclease 2 O yes N/A 0.515 0.389 0.746 1e-166
Q9U299 975 5'-3' exoribonuclease 2 h yes N/A 0.519 0.382 0.683 1e-160
Q60SG7 976 5'-3' exoribonuclease 2 h N/A N/A 0.526 0.387 0.693 1e-160
Q9FQ04 947 5'-3' exoribonuclease 4 O yes N/A 0.667 0.505 0.505 1e-141
Q8TFZ1 1058 5'-3' exoribonuclease 2 O yes N/A 0.511 0.346 0.580 1e-126
Q2UCP5 1035 5'-3' exoribonuclease 2 O yes N/A 0.501 0.347 0.557 1e-125
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2 Back     alignment and function desciption
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/380 (80%), Positives = 332/380 (87%), Gaps = 5/380 (1%)

Query: 1   MGVPAFFRWLSRKYPSVIVHCVEDKPQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
           MGVPAFFRWLSRKYPSVI+ C E+K  + + G+ I  D + PNPNG+EFDNLYLDMNGII
Sbjct: 1   MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60

Query: 60  HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
           HPCTHPEDKPAPK+EDEMMVAIFECIDRLF IVRPRKLLYMAIDGVAPRAKMNQQRSRRF
Sbjct: 61  HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 120

Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
           RA+KET EK  E+ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM RLS CLHY++
Sbjct: 121 RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV 180

Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
           HDR NN+P WKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQH LCGADADLIM
Sbjct: 181 HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM 240

Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDA----EPNPESVITFGSE 295
           LGLATHEPNFTIIREEF PN+ RPCD+C   GHEM +CVGL A      N +  +  G+E
Sbjct: 241 LGLATHEPNFTIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAE 300

Query: 296 VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
           V+FIFVRLSVLREYL++ L MPNLPF YSFERALDDWVFMCFFVGNDFLPHLPSLEIREG
Sbjct: 301 VKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 360

Query: 356 AVDRLVNLYKKTVYKTQEQL 375
           AVDRLV LYKK VYKT+  L
Sbjct: 361 AVDRLVELYKKCVYKTRGYL 380
Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1 Back     alignment and function description
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1 Back     alignment and function description
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2 PE=3 SV=2 Back     alignment and function description
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2 Back     alignment and function description
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1 Back     alignment and function description
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3 SV=4 Back     alignment and function description
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rat1 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query718
189239340 867 PREDICTED: similar to CG10354 CG10354-PA 0.679 0.562 0.690 0.0
198471914 916 GA10268 [Drosophila pseudoobscura pseudo 0.685 0.537 0.659 0.0
321474178 827 hypothetical protein DAPPUDRAFT_194028 [ 0.682 0.592 0.621 0.0
328697664 958 PREDICTED: 5'-3' exoribonuclease 2 homol 0.516 0.387 0.836 0.0
268533146 901 C. briggsae CBR-XRN-2 protein [Caenorhab 0.685 0.546 0.608 0.0
357615796699 hypothetical protein KGM_03375 [Danaus p 0.518 0.532 0.847 0.0
383854346 944 PREDICTED: 5'-3' exoribonuclease 2 homol 0.513 0.390 0.833 0.0
380025877 948 PREDICTED: 5'-3' exoribonuclease 2 homol 0.513 0.389 0.827 0.0
328788352 948 PREDICTED: 5'-3' exoribonuclease 2 homol 0.513 0.389 0.825 0.0
340714666 946 PREDICTED: 5'-3' exoribonuclease 2 homol 0.515 0.391 0.819 0.0
>gi|189239340|ref|XP_973739.2| PREDICTED: similar to CG10354 CG10354-PA [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/533 (69%), Positives = 422/533 (79%), Gaps = 45/533 (8%)

Query: 1   MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
           MGVPAFFRWLSRKYPSVIVHC+E K  +VNG ++P +S++PNPNG+EFDNLYLDMNGIIH
Sbjct: 1   MGVPAFFRWLSRKYPSVIVHCIEQKAVDVNGVRVPTNSAEPNPNGVEFDNLYLDMNGIIH 60

Query: 61  PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
           PCTHPED+PAP++EDEMMVAIFECIDR+F IVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61  PCTHPEDRPAPRNEDEMMVAIFECIDRIFNIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120

Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
           A+KET EKI E+ RIR +LL  G  LP EK K  HFDSNCITPGTPFMARLS CLHYYIH
Sbjct: 121 AAKETVEKINEIKRIRAELLLRGAKLPDEKPKEEHFDSNCITPGTPFMARLSNCLHYYIH 180

Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
           +RLNNDPGW+GIKVILSDANVPGEGEHKIMD+IR+QRAQPDHDPNTQHCLCGADADLIML
Sbjct: 181 ERLNNDPGWQGIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHCLCGADADLIML 240

Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIF 300
           GLATHEPNFTIIREEFKPN+ RPCD+CGQ+GHEMK+C+G  A    ++   F +E ++IF
Sbjct: 241 GLATHEPNFTIIREEFKPNKPRPCDICGQLGHEMKDCIGGAASAESDTQKVF-AETDYIF 299

Query: 301 VRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRL 360
           VRL+VL+EYLE+EL MPNLPF Y FER LDDWVFMCFFVGNDFLPHLPSLEIREGA+DRL
Sbjct: 300 VRLNVLKEYLERELQMPNLPFKYEFERVLDDWVFMCFFVGNDFLPHLPSLEIREGAIDRL 359

Query: 361 VNLYKKTVYKTQEQL----------------------------RQEE------------- 379
           + LYK  VYKT   L                            RQ++             
Sbjct: 360 IRLYKDCVYKTGGWLTNSGDVNLERVQLIMSELGKAEDEIFKTRQQKELQFKAREKSMLT 419

Query: 380 --NGGGGGRGVKRSFDDVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMV 437
             +     RG KR   + D+ S++++++DEVRLWEDGFKDRYYESKFDV  D++ FR  V
Sbjct: 420 PVDSQSSNRGQKRHH-EDDDESDDDQAHDEVRLWEDGFKDRYYESKFDVNSDNLDFRNNV 478

Query: 438 GHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPFASDFINIAEVDTNFETGTQP 490
              YV GLCWVL+YYYQGC SWKWY+P+HYAPFASDF++IA + T FE  + P
Sbjct: 479 ALHYVRGLCWVLRYYYQGCASWKWYYPYHYAPFASDFVHIAGLSTEFEEDSDP 531

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|198471914|ref|XP_001355769.2| GA10268 [Drosophila pseudoobscura pseudoobscura] gi|198139522|gb|EAL32828.2| GA10268 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|321474178|gb|EFX85144.1| hypothetical protein DAPPUDRAFT_194028 [Daphnia pulex] Back     alignment and taxonomy information
>gi|328697664|ref|XP_003240404.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|268533146|ref|XP_002631701.1| C. briggsae CBR-XRN-2 protein [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|357615796|gb|EHJ69836.1| hypothetical protein KGM_03375 [Danaus plexippus] Back     alignment and taxonomy information
>gi|383854346|ref|XP_003702682.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|380025877|ref|XP_003696690.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Apis florea] Back     alignment and taxonomy information
>gi|328788352|ref|XP_392371.3| PREDICTED: 5'-3' exoribonuclease 2 homolog [Apis mellifera] Back     alignment and taxonomy information
>gi|340714666|ref|XP_003395847.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query718
FB|FBgn0031868 908 Rat1 [Drosophila melanogaster 0.522 0.412 0.810 1.8e-227
MGI|MGI:894687 951 Xrn2 "5'-3' exoribonuclease 2" 0.515 0.389 0.76 1.8e-208
RGD|1310218 951 Xrn2 "5'-3' exoribonuclease 2" 0.515 0.389 0.76 2.3e-208
UNIPROTKB|F1SAU5 950 XRN2 "Uncharacterized protein" 0.515 0.389 0.762 2.3e-208
UNIPROTKB|E2RMS9 950 XRN2 "Uncharacterized protein" 0.515 0.389 0.757 7.7e-208
UNIPROTKB|F1MKX7 951 XRN2 "Uncharacterized protein" 0.515 0.389 0.757 3.3e-207
UNIPROTKB|Q9H0D6 950 XRN2 "5'-3' exoribonuclease 2" 0.515 0.389 0.754 5.4e-207
ZFIN|ZDB-GENE-040426-2874 952 xrn2 "5'-3' exoribonuclease 2" 0.515 0.388 0.752 6.8e-207
UNIPROTKB|Q5R4L5 950 XRN2 "5'-3' exoribonuclease 2" 0.515 0.389 0.754 2.9e-206
UNIPROTKB|Q5ZIP4 949 XRN2 "5'-3' exoribonuclease 2" 0.515 0.389 0.746 2.3e-204
FB|FBgn0031868 Rat1 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1638 (581.7 bits), Expect = 1.8e-227, Sum P(3) = 1.8e-227
 Identities = 308/380 (81%), Positives = 333/380 (87%)

Query:     1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
             MGVPAFFRWLSRKYPSVI+ C E+K  + + G+ I  D + PNPNG+EFDNLYLDMNGII
Sbjct:     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60

Query:    60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
             HPCTHPEDKPAPK+EDEMMVAIFECIDRLF IVRPRKLLYMAIDGVAPRAKMNQQRSRRF
Sbjct:    61 HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 120

Query:   120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
             RA+KET EK  E+ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM RLS CLHY++
Sbjct:   121 RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV 180

Query:   180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
             HDR NN+P WKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQH LCGADADLIM
Sbjct:   181 HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM 240

Query:   240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAE-P---NPESVITFGSE 295
             LGLATHEPNFTIIREEF PN+ RPCD+C   GHEM +CVGL A  P   N +  +  G+E
Sbjct:   241 LGLATHEPNFTIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAE 300

Query:   296 VEFIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 355
             V+FIFVRLSVLREYL++ L MPNLPF YSFERALDDWVFMCFFVGNDFLPHLPSLEIREG
Sbjct:   301 VKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG 360

Query:   356 AVDRLVNLYKKTVYKTQEQL 375
             AVDRLV LYKK VYKT+  L
Sbjct:   361 AVDRLVELYKKCVYKTRGYL 380
GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS
GO:0008409 "5'-3' exonuclease activity" evidence=ISS
GO:0005730 "nucleolus" evidence=ISS
GO:0022008 "neurogenesis" evidence=IMP
MGI|MGI:894687 Xrn2 "5'-3' exoribonuclease 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310218 Xrn2 "5'-3' exoribonuclease 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAU5 XRN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMS9 XRN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MKX7 XRN2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0D6 XRN2 "5'-3' exoribonuclease 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2874 xrn2 "5'-3' exoribonuclease 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R4L5 XRN2 "5'-3' exoribonuclease 2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIP4 XRN2 "5'-3' exoribonuclease 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R4L5XRN2_PONAB3, ., 1, ., 1, 3, ., -0.75460.51530.3894yesN/A
Q8TFZ1XRN2_ASPFU3, ., 1, ., 1, 3, ., -0.58090.51110.3468yesN/A
Q6CKX0XRN2_KLULA3, ., 1, ., 1, 3, ., -0.51570.50.3618yesN/A
Q5BFH3XRN2_EMENI3, ., 1, ., 1, 3, ., -0.57330.51250.3565yesN/A
Q9FQ04XRN4_ARATH3, ., 1, ., 1, 3, ., -0.50570.66710.5058yesN/A
Q9DBR1XRN2_MOUSE3, ., 1, ., 1, 3, ., -0.760.51530.3890yesN/A
P0CL88XRN2_CRYNJ3, ., 1, ., 1, 3, ., -0.53860.50830.3238yesN/A
Q5ZIP4XRN2_CHICK3, ., 1, ., 1, 3, ., -0.74660.51530.3898yesN/A
Q74ZA0XRN2_ASHGO3, ., 1, ., 1, 3, ., -0.54590.49720.3777yesN/A
Q6FKN6XRN2_CANGA3, ., 1, ., 1, 3, ., -0.52540.49300.3477yesN/A
Q9H0D6XRN2_HUMAN3, ., 1, ., 1, 3, ., -0.75460.51530.3894yesN/A
Q2UCP5XRN2_ASPOR3, ., 1, ., 1, 3, ., -0.55750.50130.3478yesN/A
P40848XRN2_SCHPO3, ., 1, ., 1, 3, ., -0.55640.49860.3612yesN/A
Q6BNU7XRN2_DEBHA3, ., 1, ., 1, 3, ., -0.52510.49580.3549yesN/A
Q9VM71XRN2_DROME3, ., 1, ., 1, 3, ., -0.80780.52220.4129yesN/A
Q02792XRN2_YEAST3, ., 1, ., 1, 3, ., -0.53240.48880.3489yesN/A
Q4HWE2XRN2_GIBZE3, ., 1, ., 1, 3, ., -0.54640.51250.3755yesN/A
Q9U299XRN2_CAEEL3, ., 1, ., 1, 3, ., -0.68310.51940.3825yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query718
pfam03159237 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus 1e-157
COG5049 953 COG5049, XRN1, 5'-3' exonuclease [DNA replication, 1e-150
COG5049 953 COG5049, XRN1, 5'-3' exonuclease [DNA replication, 1e-24
COG5049 953 COG5049, XRN1, 5'-3' exonuclease [DNA replication, 4e-18
>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus Back     alignment and domain information 
 Score =  453 bits (1168), Expect = e-157
 Identities = 171/256 (66%), Positives = 194/256 (75%), Gaps = 19/256 (7%)

Query: 1   MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
           MGVP FFRWLS +YP +I   +E +  +                  EFDNLYLDMNGIIH
Sbjct: 1   MGVPKFFRWLSERYPKIIQPIIEHQIPD------------------EFDNLYLDMNGIIH 42

Query: 61  PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
           PC+HPEDKP P+ EDEM VAIFE IDRLF IVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 43  PCSHPEDKPFPETEDEMFVAIFEYIDRLFNIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 102

Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
           A+K+  EK AE    RE+L  +G  LP + EK   FDSNCITPGTPFMARL+  L YYI 
Sbjct: 103 AAKDAKEKEAEAEENREELETEGIKLPEKVEK-EKFDSNCITPGTPFMARLAKALRYYIK 161

Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
            +LN DP W+ + VILSDA VPGEGEHKIMD+IR QRAQPD+DPNT+HCL G DADLIML
Sbjct: 162 KKLNTDPEWQNLTVILSDAEVPGEGEHKIMDFIRSQRAQPDYDPNTRHCLYGLDADLIML 221

Query: 241 GLATHEPNFTIIREEF 256
           GLATHEP+F+++REE 
Sbjct: 222 GLATHEPHFSVLREEV 237

This family aligns residues towards the N-terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, the aligned region may be necessary for 5' to 3' exonuclease function. The family also contains several Xrn1 and Xrn2 proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p function in the degradation and processing of several classes of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme catalyzing cytoplasmic mRNA degradation in multiple decay pathways, whereas Xrn2p/Rat1p functions in the processing of rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus. Length = 237
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] Back     alignment and domain information
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] Back     alignment and domain information
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 718
KOG2044|consensus 931 100.0
COG5049 953 XRN1 5'-3' exonuclease [DNA replication, recombina 100.0
KOG2045|consensus 1493 100.0
PF03159237 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: 100.0
cd00128316 XPG Xeroderma pigmentosum G N- and I-regions (XPGN 98.78
PTZ00217393 flap endonuclease-1; Provisional 98.29
PRK03980292 flap endonuclease-1; Provisional 97.49
TIGR03674338 fen_arch flap structure-specific endonuclease. End 97.47
smart00475259 53EXOc 5'-3' exonuclease. 96.1
smart0048599 XPGN Xeroderma pigmentosum G N-region. domain in n 95.94
PF00752101 XPG_N: XPG N-terminal domain; InterPro: IPR006085 95.91
cd00008240 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas 95.18
PRK14976281 5'-3' exonuclease; Provisional 94.18
KOG2044|consensus 931 92.99
PF0086794 XPG_I: XPG I-region; InterPro: IPR006086 This entr 92.66
KOG2519|consensus449 90.85
KOG2518|consensus556 84.87
PRK05755 880 DNA polymerase I; Provisional 82.66
>KOG2044|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-218  Score=1804.87  Aligned_cols=571  Identities=65%  Similarity=1.135  Sum_probs=533.3

Q ss_pred             CcchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCCCCCCCCCCHHHHHHH
Q psy1016           1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVA   80 (718)
Q Consensus         1 MGVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~~~~~~teee~f~~   80 (718)
                      ||||+|||||++|||+++++|+|+++.+++|..||+|.|+|||||+||||||||||||||||+||+++|+|.||+|||..
T Consensus         1 MGVPaffRWLs~kyp~~I~~viEe~p~~~~g~~ip~D~s~pNPNg~E~DNLYLDMNGIIHPC~HPEdkPaP~tedEm~~a   80 (931)
T KOG2044|consen    1 MGVPAFFRWLSRKYPKTISPVIEEEPVDVDGVKIPVDYSKPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPETEDEMFVA   80 (931)
T ss_pred             CCchHHHHHHHHhcchhhhhhhhcCcccCCCcccccccCCCCCCcccccceeeecCcccccCCCCCCCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCcccc
Q psy1016          81 IFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNC  160 (718)
Q Consensus        81 If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~fDSN~  160 (718)
                      ||+||||||.+||||||||||||||||||||||||+||||||||++++.+++++++++++++|..+|++ .+.+.|||||
T Consensus        81 vFeyiDrlf~mvRPRkLLymAIDGVAPRAKMNQQRsRRFRaaKeaae~~~e~e~~ree~~~~G~~lpp~-~~~e~fDSNc  159 (931)
T KOG2044|consen   81 VFEYIDRLFSMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKEAAEKEAEIERLREEFEAEGKFLPPK-VKKETFDSNC  159 (931)
T ss_pred             HHHHHHHHHHhccchheeEEeecccCchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCcCCch-hhccccccCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999887 5678999999


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHHHH
Q psy1016         161 ITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML  240 (718)
Q Consensus       161 ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLImL  240 (718)
                      |||||+||++|+.+|+|||+.||++||+|++++||+|||+||||||||||+|||+||++|+|||||+|||||+|||||||
T Consensus       160 ITPGTpFM~~La~aLrYyI~~rLn~DPgWkNikvIlSDAnVPGEGEHKIM~yIR~QR~~P~~dPNT~HclyGlDADLImL  239 (931)
T KOG2044|consen  160 ITPGTPFMDRLAKALRYYIHDRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRSQRAQPGYDPNTHHCLYGLDADLIML  239 (931)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhhcCCccccceEEEEecCCCCCcchhHHHHHHHHccCCCCCCCCceeeeecCCccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCC--ccccCCCCccEEEEEehhHHHHHHHHhCCCC
Q psy1016         241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPE--SVITFGSEVEFIFVRLSVLREYLEKELAMPN  318 (718)
Q Consensus       241 ~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~--~~~~~~~~~~f~ll~IsiLREyL~~E~~~~~  318 (718)
                      ||||||+||+||||+|.|+++++|.+|||.||+.++|.|+.+.....  .+.. ..+++|+||||++|||||..||.+|+
T Consensus       240 gLATHE~hF~IlRE~~~P~~~~~C~~cgq~gh~~~dc~g~~~~~~~~~~~~~~-~~ek~fifl~I~vLREYLe~El~~p~  318 (931)
T KOG2044|consen  240 GLATHEPHFSILREEFFPNKPRRCFLCGQTGHEAKDCEGKPRLGETNELADVP-GVEKPFIFLNISVLREYLERELRMPN  318 (931)
T ss_pred             eccccCCceEEeeeeecCCCcccchhhcccCCcHhhcCCcCCcccccccccCc-ccccceEEEEHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999986522111  1122 46789999999999999999999999


Q ss_pred             CCCCCCccchhhHHhhhhcccccccCCCCCCccccchhHHHHHHHHHHHhhhcCCcccccccC------------CCC--
Q psy1016         319 LPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENG------------GGG--  384 (718)
Q Consensus       319 l~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Yk~~l~~~~gYLt~~ek~------------g~~--  384 (718)
                      +||++|+||+||||||||||||||||||||||+|++||||.|+++||+.+++++||||..++.            |..  
T Consensus       319 lPf~fd~ER~iDDwVF~CFFvGNDFLPHlPsLeIRegAId~L~~iyk~~~~~~kgYLT~~g~vNL~rve~~~~avg~~Ed  398 (931)
T KOG2044|consen  319 LPFTFDLERAIDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLMEIYKKSFPKMKGYLTDSGKVNLDRVEMFMQAVGSVED  398 (931)
T ss_pred             CCccccHHhhhcceEEEEeeecCccCCCCCchhhhhcHHHHHHHHHHHHHHhhcceeccCCcccHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999965320            000  


Q ss_pred             ------------CC-----------CC-----------CC-----------------CC-----------C---------
Q psy1016         385 ------------GR-----------GV-----------KR-----------------SF-----------D---------  393 (718)
Q Consensus       385 ------------~~-----------~~-----------kr-----------------~~-----------~---------  393 (718)
                                  ++           ..           ++                 ++           +         
T Consensus       399 ~IFkkR~r~~e~frrrk~~rk~~~~~~~~sg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  478 (931)
T KOG2044|consen  399 DIFKKRQRREERFRRRKAARKRQDRNAQDSGTNFSLAGSRELEASEPAQKALKVSLEKNESAANVERDNTEDLKTKLKHG  478 (931)
T ss_pred             hHHHHhHhHHHHHHHhhhhhhhhhhhcccccccccccccccccccchhhhhhhhccccccchhhhcccchhhcccccccc
Confidence                        00           00           00                 00           0         


Q ss_pred             ---CCCCCCccccchhhhhhhhhhhHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhHHHhhhhcCCCCCcccccCCCCCcc
Q psy1016         394 ---DVDESSEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCRSWKWYFPFHYAPF  470 (718)
Q Consensus       394 ---~~~~~~~~~~~~d~v~l~e~~~k~rYY~~Kf~~~~~d~e~~~~i~~~YleGL~WVL~YYy~GcpSW~WyYPYHYAPf  470 (718)
                         ..+++..+++.+|+|+|||.|||+|||++||++++.+++++++||.+|+|||||||+|||+||+||+||||||||||
T Consensus       479 ~~~k~~~~~~~~~~~D~VkL~e~G~keRYY~~KF~v~~~eeq~R~~vv~~YveGLcWVl~YYyqGc~SW~WyYPYHYAPf  558 (931)
T KOG2044|consen  479 QRRKSEDSESEEENTDKVKLYEPGWKERYYEEKFDVTPDEEQIRKDVVLKYVEGLCWVLRYYYQGCASWNWYYPYHYAPF  558 (931)
T ss_pred             ccccCccccCCCCCCcceeecCCchhhhhhhhhcCCCCHHHHHHHHHHHHHhcchhhhhhhhhccccccccccccccchh
Confidence               00122344566788999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccccccCCCCCCCcHHHHHhhhhcccccchhcccccccccccccccccCCccccccchhhhhcchhHHHHH
Q psy1016         471 ASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRILKFYVSDNIHLLIL  550 (718)
Q Consensus       471 aSDl~~i~~~~i~Fe~g~kPf~PfeQLl~Il~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (718)
                      ||||+++..++|+|++|+ ||+|||||                                                     
T Consensus       559 AsDf~~l~~ldikFe~g~-PFkP~eQL-----------------------------------------------------  584 (931)
T KOG2044|consen  559 ASDFKGLSDLDIKFELGK-PFKPLEQL-----------------------------------------------------  584 (931)
T ss_pred             hhhhhcccccccccccCC-CCCcHHHH-----------------------------------------------------
Confidence            999999999999999995 99999999                                                     


Q ss_pred             HHHHhhhhccceeeeeeeeeceeeecccccccccccccCCCCcCCccchhHHHHHHHHhhcccchHHHHHhhhhhHHHHH
Q psy1016         551 LVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDEIFKKRQQTETMFK  630 (718)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~m~vlp~~s~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (718)
                                            |+|||+||+++         ||                               +.|  
T Consensus       585 ----------------------mgVlPAAS~~~---------LP-------------------------------e~~--  600 (931)
T KOG2044|consen  585 ----------------------MGVLPAASSHA---------LP-------------------------------EEW--  600 (931)
T ss_pred             ----------------------hhhcchhhcCC---------Cc-------------------------------HHH--
Confidence                                  99999999999         99                               999  


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCCCCCccccCCCCccccCCCCcccceeEEeccCCChhHHHHHHhhhhc
Q psy1016         631 MRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEERLHKALAPYYE  710 (718)
Q Consensus       631 ~~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spi~dfyP~~f~~D~ngk~~~w~~v~llPfid~~~l~~~~~~~~~  710 (718)
                       |+||                          |||+|||+||||+||+||||||||+||||||||||||.|||+|++.++.
T Consensus       601 -r~LM--------------------------sdpdSpIiDFYPedF~iDmNGKk~aWQGIalLPFiDe~rLl~a~~~~y~  653 (931)
T KOG2044|consen  601 -RKLM--------------------------SDPDSPIIDFYPEDFEIDMNGKKYAWQGIALLPFIDERRLLSAVAKVYP  653 (931)
T ss_pred             -Hhhh--------------------------cCCCCcccccccccceeeccCceeeccccccccccchhhHHHHHHhhcc
Confidence             9999                          9999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhhC
Q psy1016         711 KLSVEESE  718 (718)
Q Consensus       711 ~l~~~e~~  718 (718)
                      .||+||++
T Consensus       654 ~Lt~EE~~  661 (931)
T KOG2044|consen  654 TLTDEEKR  661 (931)
T ss_pred             ccCHHHHh
Confidence            99999974

>COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] Back     alignment and domain information
>KOG2045|consensus Back     alignment and domain information
>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions Back     alignment and domain information
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases Back     alignment and domain information
>PTZ00217 flap endonuclease-1; Provisional Back     alignment and domain information
>PRK03980 flap endonuclease-1; Provisional Back     alignment and domain information
>TIGR03674 fen_arch flap structure-specific endonuclease Back     alignment and domain information
>smart00475 53EXOc 5'-3' exonuclease Back     alignment and domain information
>smart00485 XPGN Xeroderma pigmentosum G N-region Back     alignment and domain information
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer Back     alignment and domain information
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes Back     alignment and domain information
>PRK14976 5'-3' exonuclease; Provisional Back     alignment and domain information
>KOG2044|consensus Back     alignment and domain information
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment Back     alignment and domain information
>KOG2519|consensus Back     alignment and domain information
>KOG2518|consensus Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query718
3fqd_A 899 Crystal Structure Of The S. Pombe Rat1-Rai1 Complex 1e-106
3fqd_A899 Crystal Structure Of The S. Pombe Rat1-Rai1 Complex 3e-23
3fqd_A 899 Crystal Structure Of The S. Pombe Rat1-Rai1 Complex 9e-15
3pie_A 1155 Crystal Structure Of The 5'->3' Exoribonuclease Xrn 3e-81
3pie_A 1155 Crystal Structure Of The 5'->3' Exoribonuclease Xrn 2e-12
3pie_A 1155 Crystal Structure Of The 5'->3' Exoribonuclease Xrn 3e-09
2y35_A 1140 Crystal Structure Of Xrn1-Substrate Complex Length 6e-76
2y35_A 1140 Crystal Structure Of Xrn1-Substrate Complex Length 3e-14
2y35_A 1140 Crystal Structure Of Xrn1-Substrate Complex Length 9e-10
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex Length = 899 Back     alignment and structure 
Iteration: 1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/371 (53%), Positives = 258/371 (69%), Gaps = 14/371 (3%)
Query: 2   GVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIH 60
           GVPA FR LSRK+  VI   +E   +++ +G +I  D S PNPNG+E DNLYLD NGI+H
Sbjct: 5   GVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDXNGIVH 64
Query: 61  PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
           PC+HPED+PAP+ EDE  VA+FE  DR+   VRPR+LL++AIDGVAPRAK NQQRSRRFR
Sbjct: 65  PCSHPEDRPAPETEDEXXVAVFEYTDRILAXVRPRQLLFIAIDGVAPRAKXNQQRSRRFR 124
Query: 121 ASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYIH 180
           +S+E A K  E+    E+    G  +     K   +DSNCITPGTPF   L+  L YYI 
Sbjct: 125 SSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFXDTLAKSLRYYII 184
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIML 240
           ++LN+DP W+ ++ ILSDA+VPGEGEHKI ++IR QR +P++DPNT H + G DADLI L
Sbjct: 185 NKLNSDPCWRNVRFILSDASVPGEGEHKIXEFIRSQRVKPEYDPNTHHVVYGLDADLIXL 244
Query: 241 GLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMK---ECVGLDAEPNPESVITFGSEVE 297
           GLATHEP+F ++RE          DV  Q G   K   E +G+    +         +  
Sbjct: 245 GLATHEPHFRVLRE----------DVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKP 294
Query: 298 FIFVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAV 357
           FI++ +S+LREYLE EL +PNLPFP+  ERA+DDWVF  FFVGNDFLPHLPSL+IR+GAV
Sbjct: 295 FIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAV 354
Query: 358 DRLVNLYKKTV 368
           +RL  +++ ++
Sbjct: 355 ERLTEIWRASL 365
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex Length = 899 Back     alignment and structure
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex Length = 899 Back     alignment and structure
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q Mutant Length = 1155 Back     alignment and structure
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q Mutant Length = 1155 Back     alignment and structure
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q Mutant Length = 1155 Back     alignment and structure
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex Length = 1140 Back     alignment and structure
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex Length = 1140 Back     alignment and structure
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex Length = 1140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query718
3fqd_A 899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 1e-117
3fqd_A899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 3e-22
3fqd_A 899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 6e-14
3fqd_A 899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 3e-08
2y35_A 1140 LD22664P; hydrolase-DNA complex, RNA degradation, 1e-106
2y35_A 1140 LD22664P; hydrolase-DNA complex, RNA degradation, 9e-14
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 5e-95
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 6e-21
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 1e-14
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 Back     alignment and structure
 Score =  372 bits (956), Expect = e-117
 Identities = 204/373 (54%), Positives = 266/373 (71%), Gaps = 8/373 (2%)

Query: 1   MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGII 59
           MGVPA FR LSRK+  VI   +E   +++ +G +I  D S PNPNG+E DNLYLDMNGI+
Sbjct: 4   MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 63

Query: 60  HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
           HPC+HPED+PAP+ EDEMMVA+FE  DR+  +VRPR+LL++AIDGVAPRAKMNQQRSRRF
Sbjct: 64  HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 123

Query: 120 RASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMARLSACLHYYI 179
           R+S+E A K  E+    E+    G  +     K   +DSNCITPGTPFM  L+  L YYI
Sbjct: 124 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 183

Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM 239
            ++LN+DP W+ ++ ILSDA+VPGEGEHKIM++IR QR +P++DPNT H + G DADLIM
Sbjct: 184 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 243

Query: 240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFI 299
           LGLATHEP+F ++RE+    Q       G      +E +G+    +         +  FI
Sbjct: 244 LGLATHEPHFRVLREDVFFQQ-------GSTKKTKEERLGIKRLDDVSETNKVPVKKPFI 296

Query: 300 FVRLSVLREYLEKELAMPNLPFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR 359
           ++ +S+LREYLE EL +PNLPFP+  ERA+DDWVF  FFVGNDFLPHLPSL+IR+GAV+R
Sbjct: 297 WLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVER 356

Query: 360 LVNLYKKTVYKTQ 372
           L  +++ ++    
Sbjct: 357 LTEIWRASLPHMG 369
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 Back     alignment and structure
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 Back     alignment and structure
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 Back     alignment and structure
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Length = 1140 Back     alignment and structure
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Length = 1140 Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query718
3fqd_A 899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 100.0
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 100.0
2y35_A 1140 LD22664P; hydrolase-DNA complex, RNA degradation, 100.0
1b43_A340 Protein (FEN-1); nuclease, DNA repair, DNA replica 98.48
1rxw_A336 Flap structure-specific endonuclease; helical clam 98.31
1a76_A326 Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea 98.27
3qe9_Y352 Exonuclease 1; exonuclease, hydrolase-DNA complex; 98.1
3ory_A363 Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco 97.87
1ul1_X379 Flap endonuclease-1; protein complex, DNA-binding 97.72
3q8k_A341 Flap endonuclease 1; helix-3 turn-helix, hydrophob 97.68
2izo_A346 FEN1, flap structure-specific endonuclease; hydrol 97.54
1exn_A290 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent 96.36
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.6e-194  Score=1663.09  Aligned_cols=566  Identities=53%  Similarity=0.943  Sum_probs=497.5

Q ss_pred             CcchhHHHHHHHhCCCceecccccCCccc-CCccccCCCCCCCCCCcccceEEEecccccccccCCCCCCCCCCHHHHHH
Q psy1016           1 MGVPAFFRWLSRKYPSVIVHCVEDKPQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMV   79 (718)
Q Consensus         1 MGVP~FfrWL~~rYP~iv~~~~e~~~~~~-~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~~~~~~~teee~f~   79 (718)
                      ||||+|||||++|||+|+++|+|+.++.+ +|.++|+|.+.|||||.+|||||||||||||+|+|+++.+.+.||++||.
T Consensus         4 MGVP~ffRWLs~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~~~~te~e~~~   83 (899)
T 3fqd_A            4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMV   83 (899)
T ss_dssp             CCHHHHHHHHHHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSCCCCSHHHHHH
T ss_pred             cchHHHHHHHHHHCCccchhhcccccccccCCccccccccCCCCCCcccceEEEecchhhhhhcCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999998887 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCccc
Q psy1016          80 AIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSN  159 (718)
Q Consensus        80 ~If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~fDSN  159 (718)
                      +||+|||+||++|||||+||||||||||||||||||+||||+|++++++.+..+++++++.++|...+.+...+..||||
T Consensus        84 ~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN  163 (899)
T 3fqd_A           84 AVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSN  163 (899)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHSCCCCCGG
T ss_pred             HHHHHHHHHHHHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCccccccccCCCcC
Confidence            99999999999999999999999999999999999999999999998877777778888888884333333356799999


Q ss_pred             cccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCChhHHH
Q psy1016         160 CITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADADLIM  239 (718)
Q Consensus       160 ~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDADLIm  239 (718)
                      ||||||+||.+|+.+|++||++||++||.|++++||||||+||||||||||+|||++|++|+||||++|||||+||||||
T Consensus       164 ~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLIm  243 (899)
T 3fqd_A          164 CITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM  243 (899)
T ss_dssp             GSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEeccccCCCCCCCCcccccCCcccccccCCCCCCCCCccccCCCCccEEEEEehhHHHHHHHHhCCCCC
Q psy1016         240 LGLATHEPNFTIIREEFKPNQARPCDVCGQMGHEMKECVGLDAEPNPESVITFGSEVEFIFVRLSVLREYLEKELAMPNL  319 (718)
Q Consensus       240 L~LatHe~~f~ILRE~~~~~~~~~~~~c~q~g~~~~~c~~~~~~~~~~~~~~~~~~~~f~ll~IsiLREyL~~E~~~~~l  319 (718)
                      |||+||||||+||||++.++.       +|.||...+|.+..+.............++|+||||++|||||..||..+++
T Consensus       244 L~LatHep~f~ILRE~v~~~~-------~q~~~~~~~~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~  316 (899)
T 3fqd_A          244 LGLATHEPHFRVLREDVFFQQ-------GSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNL  316 (899)
T ss_dssp             HHHHTTCSSEEEEEECCC----------------CTTTTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTC
T ss_pred             HhhhccCCceEEEeeecccCc-------CccccchhhhccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCC
Confidence            999999999999999987654       5678888899886543111111122346789999999999999999999999


Q ss_pred             CCCCCccchhhHHhhhhcccccccCCCCCCccccchhHHHHHHHHHHHhhhcCCcccccccC------------------
Q psy1016         320 PFPYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKTVYKTQEQLRQEENG------------------  381 (718)
Q Consensus       320 ~f~~d~ERiIDDFVfLcflvGNDFLPhlPsl~I~egaid~Li~~Yk~~l~~~~gYLt~~ek~------------------  381 (718)
                      +|+||+||+||||||||||||||||||||+|+|++|||+.|+++||+++++++||||+.++.                  
T Consensus       317 ~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I~egaid~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~L~~~E~~  396 (899)
T 3fqd_A          317 PFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDD  396 (899)
T ss_dssp             SSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCGGGTHHHHHHHHHHHHHHHHSSCSEETTEECHHHHHHHHHHHHTTHHH
T ss_pred             CCCchhhhhhhhhhhhhHhhCcccCCCCCccCcCCChHHHHHHHHHHHHHHcCCeeecCCEEcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999854220                  


Q ss_pred             --------------CCCC-------C-C------------------------------CC----C---------------
Q psy1016         382 --------------GGGG-------R-G------------------------------VK----R---------------  390 (718)
Q Consensus       382 --------------g~~~-------~-~------------------------------~k----r---------------  390 (718)
                                    +.+.       + .                              .+    +               
T Consensus       397 iF~~r~~~e~~~~~~~krr~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (899)
T 3fqd_A          397 IFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLS  476 (899)
T ss_dssp             HHHHHHHHHTTTC-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccccccccccCcccccccccc
Confidence                          0000       0 0                              00    0               


Q ss_pred             --------------------------C---------CCC-----------------C--CC---C---------------
Q psy1016         391 --------------------------S---------FDD-----------------V--DE---S---------------  398 (718)
Q Consensus       391 --------------------------~---------~~~-----------------~--~~---~---------------  398 (718)
                                                .         ...                 .  ++   .               
T Consensus       477 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~n~~~a~~lk~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  556 (899)
T 3fqd_A          477 EKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTP  556 (899)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccchhhhhhhhhhcchhhhhhhhhhhhhhcccchhHHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence                                      0         000                 0  00   0               


Q ss_pred             ---------------------CccccchhhhhhhhhhhHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhHHHhhhhcCCCC
Q psy1016         399 ---------------------SEEEESNDEVRLWEDGFKDRYYESKFDVPKDDIAFRLMVGHEYVLGLCWVLKYYYQGCR  457 (718)
Q Consensus       399 ---------------------~~~~~~~d~v~l~e~~~k~rYY~~Kf~~~~~d~e~~~~i~~~YleGL~WVL~YYy~Gcp  457 (718)
                                           .++.+..|.+++|+++||+|||++|||++.++.+++++||++|||||||||+|||+|||
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l~e~g~K~rYY~~KF~~~~~d~e~~~~v~~~YvEGL~WVL~YYYqGc~  636 (899)
T 3fqd_A          557 VVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCP  636 (899)
T ss_dssp             ----------------------------CCSCTTSTTHHHHHHHHTSCCCTTCTHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             chhhhhccccccccccccccccccccchhhhhhcccchHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                                 00011335688999999999999999999888899999999999999999999999999


Q ss_pred             CcccccCCCCCcchhhhhhhccccccccCCCCCCCcHHHHHhhhhcccccchhcccccccccccccccccCCccccccch
Q psy1016         458 SWKWYFPFHYAPFASDFINIAEVDTNFETGTQPVNNNRILKFILYHFDNKMFFWNKSLINIAEVDTNFETGTQPVNNRIL  537 (718)
Q Consensus       458 SW~WyYPYHYAPfaSDl~~i~~~~i~Fe~g~kPf~PfeQLl~Il~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (718)
                      ||+||||||||||||||+++.+++++|++|. ||+|||||                                        
T Consensus       637 SW~WyYPYHYAPfaSD~~~~~~~~i~Fe~G~-PF~PfEQL----------------------------------------  675 (899)
T 3fqd_A          637 SWTWYYPYHYAPFAADFKDLASIDVKFELNQ-PFKPYEQL----------------------------------------  675 (899)
T ss_dssp             CSSCCCCCSSCCCGGGCCSCTTCCCCCCCCC-CCCHHHHH----------------------------------------
T ss_pred             CCcccCcccccchHHHHhhcccCceecCCCC-CCChHHHH----------------------------------------
Confidence            9999999999999999999999999999996 99999999                                        


Q ss_pred             hhhhcchhHHHHHHHHHhhhhccceeeeeeeeeceeeecccccccccccccCCCCcCCccchhHHHHHHHHhhcccchHH
Q psy1016         538 KFYVSDNIHLLILLVLRSWLVSLHVFTITYMIVSTMTLAGKASKLFSRMLTYPGFLTDSGDVKLERVQLIMQDLGMMEDE  617 (718)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~vlp~~s~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~  617 (718)
                                                         |||||++|+++         ||                       
T Consensus       676 -----------------------------------MaVLPaaS~~~---------LP-----------------------  688 (899)
T 3fqd_A          676 -----------------------------------LGVLPAASKNN---------LP-----------------------  688 (899)
T ss_dssp             -----------------------------------HHHCCGGGGGG---------SC-----------------------
T ss_pred             -----------------------------------HhhcCHhhhCc---------cc-----------------------
Confidence                                               99999999999         99                       


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCCCCCccccCCCCccccCCCCcccceeEEeccCCC
Q psy1016         618 IFKKRQQTETMFKMRNKMKKRRERQMKMAAQSTKAPSFIPGGQFAPQDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVD  697 (718)
Q Consensus       618 ~~~~~~~~~~~~~~~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spi~dfyP~~f~~D~ngk~~~w~~v~llPfid  697 (718)
                              ++|   |+||                          ++|+|||+||||++|+|||||||++|||||||||||
T Consensus       689 --------~~y---~~LM--------------------------tdp~SpIiDFYP~dFeiDmNGKk~~WqgVvlLPFID  731 (899)
T 3fqd_A          689 --------EKL---QTLM--------------------------TDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFID  731 (899)
T ss_dssp             --------HHH---HHHH--------------------------HCTTCTTGGGCCSCCCEECSSSSCTTSSEECCCCCC
T ss_pred             --------HHH---HHHh--------------------------cCCCCcchhhCcccccccCCCCccccceEEecCccC
Confidence                    999   9999                          999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhhcCCChhhhC
Q psy1016         698 EERLHKALAPYYEKLSVEESE  718 (718)
Q Consensus       698 ~~~l~~~~~~~~~~l~~~e~~  718 (718)
                      |+|||+||+++++.||+||++
T Consensus       732 E~RLL~A~~~~~~~LT~eEk~  752 (899)
T 3fqd_A          732 ENRLLNAVSKIYPQLTEEESK  752 (899)
T ss_dssp             HHHHHHHHHTTGGGSCHHHHH
T ss_pred             HHHHHHHHHHhhccCCHHHHH
Confidence            999999999999999999973
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Back     alignment and structure
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Back     alignment and structure
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Back     alignment and structure
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Back     alignment and structure
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Back     alignment and structure
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* Back     alignment and structure
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Back     alignment and structure
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Back     alignment and structure
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Back     alignment and structure
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Back     alignment and structure
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query718
d1ul1x2216 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 97.67
d1rxwa2217 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 96.86
d1b43a2219 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 96.26
d1a77a2207 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 95.49
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.4e-05  Score=75.51  Aligned_cols=179  Identities=16%  Similarity=0.214  Sum_probs=90.7

Q ss_pred             cchhHHHHHHHhCCCceecccccCCcccCCccccCCCCCCCCCCcccceEEEecccccccccCCC---CCCCCCC---HH
Q psy1016           2 GVPAFFRWLSRKYPSVIVHCVEDKPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPE---DKPAPKD---ED   75 (718)
Q Consensus         2 GVP~FfrWL~~rYP~iv~~~~e~~~~~~~g~~ip~d~s~pnpn~~efDnLYLDMNgIIH~c~h~~---~~~~~~t---ee   75 (718)
                      ||.++..+|.+.-|.+++..-   -.+..|.                 -+=||.+..+|.+....   ..+....   ..
T Consensus         1 GIkgL~~~l~~~~~~~i~~~~---l~~l~gk-----------------~vaIDas~~l~~~l~~~~~~~~~l~~~~~~~~   60 (216)
T d1ul1x2           1 GIQGLAKLIADVAPSAIREND---IKSYFGR-----------------KVAIDASMSIYQFLIAVRQGGDVLQNEEGETT   60 (216)
T ss_dssp             CCTTHHHHHHTTCTTSCCEEC---GGGGTTC-----------------CEEEEHHHHHHHHHSCC-------------CC
T ss_pred             CcchHHHHHHHhCcCceEEec---HHHcCCC-----------------EEEEEeHHHHHHHHHHhccccchhhccCCCCc
Confidence            999999999999988765321   1122332                 46799999998754321   1110001   11


Q ss_pred             HHHHHHHHHHHHHHhhhccceeEEEEecCCCcchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCC
Q psy1016          76 EMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSH  155 (718)
Q Consensus        76 e~f~~If~yId~L~~~VrPrKllyiAIDGVAPrAKMnQQRsRRFrsa~e~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~  155 (718)
                      .-+..++..+..|.   +=.=..++.+||-+|-.|..+...||-+.. ++.++...   .    .+.+..     .....
T Consensus        61 ~~l~~~~~~~~~l~---~~~I~pifVFDG~~~~~K~~~~~~R~~~r~-~~~~~~~~---~----~~~~~~-----~~~~~  124 (216)
T d1ul1x2          61 SHLMGMFYRTIRMM---ENGIKPVYVFDGKPPQLKSGELAKRSERRA-EAEKQLQQ---A----QAAGAE-----QEVEK  124 (216)
T ss_dssp             HHHHHHHHHHHHHH---HTTCCEEEEECCSCCSCCCCCCCCC--------------------------------------
T ss_pred             HHHHHHHHHHHHHH---HcCCeEEEEEcCCCCccccchhhhhhhhHH-HhhhhHHh---h----hhcchH-----HHHHH
Confidence            22333333333332   223335788999999888766555543321 11110000   0    001100     01123


Q ss_pred             CccccccCCcHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEcCCCCCCchhhHHHHHHHHhhcCCCCCCCCcEEEEcCCh
Q psy1016         156 FDSNCITPGTPFMARLSACLHYYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHCLCGADA  235 (718)
Q Consensus       156 fDSN~ITPGT~FM~kL~~~L~~yI~~kl~~dp~W~~l~VIlSds~VPGEGEHKImdfIR~~r~~p~ydpNt~HcIYGlDA  235 (718)
                      +....++..+.....+.+.|+.     +       ++.+|.    .|||||.-+..+.++         +.-..|+|.|+
T Consensus       125 ~~~~~~~i~~~~~~~~~~ll~~-----~-------gv~~i~----Ap~EAdaq~A~L~~~---------g~vd~v~S~Ds  179 (216)
T d1ul1x2         125 FTKRLVKVTKQHNDECKHLLSL-----M-------GIPYLD----APSEAEASCAALVKA---------GKVYAAATEDM  179 (216)
T ss_dssp             ----CCCCCCSCHHHHHHHHHH-----H-------TCCEEE----CSSCHHHHHHHHHHH---------TSSSEEECSCT
T ss_pred             hhccCeeccHHHHHHHHHHHHh-----c-------CeeeEe----ccchHHHHHHHHHhc---------CceEEEEcccc
Confidence            3444455545555555554443     1       455665    399999887766554         23458899999


Q ss_pred             hHHHHh
Q psy1016         236 DLIMLG  241 (718)
Q Consensus       236 DLImL~  241 (718)
                      |+++.|
T Consensus       180 D~l~fG  185 (216)
T d1ul1x2         180 DCLTFG  185 (216)
T ss_dssp             HHHHTT
T ss_pred             ceeccC
Confidence            999998
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure